RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11458
(159 letters)
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor
11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 46.3 bits (109), Expect = 2e-07
Identities = 36/83 (43%), Positives = 50/83 (60%)
Query: 46 CNEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLT 105
E + + + FDG A E Q+ AA FCS Q IALE ++ ++RK+SR F+
Sbjct: 86 LREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQ 145
Query: 106 EAELNPLCRRLQLKDIIPTGMLR 128
EAE +P CRRLQL+D+I + M R
Sbjct: 146 EAESHPQCRRLQLRDLIISEMQR 168
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor
12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Length = 234
Score = 46.0 bits (108), Expect = 3e-07
Identities = 39/71 (54%), Positives = 49/71 (69%)
Query: 58 QMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQ 117
+ + +F G E + AAATFCS Q ALE ++ R++KDSR F+ +AE NPLCRRLQ
Sbjct: 101 EDLLTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQ 160
Query: 118 LKDIIPTGMLR 128
LKDIIPT M R
Sbjct: 161 LKDIIPTQMQR 171
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId:
10090]}
Length = 208
Score = 32.4 bits (73), Expect = 0.014
Identities = 11/57 (19%), Positives = 20/57 (35%)
Query: 72 FQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
+CS+ + A + L + + L E R L+D++ M R
Sbjct: 109 RFLVYGRYCSQVESASKHLDQVATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQR 165
>d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA
polymerase Taq {Thermus aquaticus [TaxId: 271]}
Length = 116
Score = 27.1 bits (59), Expect = 0.58
Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 1/78 (1%)
Query: 43 WKICNEYCEYQNQEYQMNMEYFDGAAGEA-FQRAAATFCSRQQIALESLRERRRKDSRLN 101
W + ++ E + A + + ++ + R RL
Sbjct: 38 WGSLEALLKNLDRLKPAIREKILAHMDDLKLSWDLAKVRTDLPLEVDFAKRREPDRERLR 97
Query: 102 AFLTEAELNPLCRRLQLK 119
AFL E L L
Sbjct: 98 AFLERLEFGSLLHEFGLL 115
>d1hcca_ g.18.1.1 (A:) Factor H, 15th and 16th modules {Human
(Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 24.9 bits (54), Expect = 1.3
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 3 PPPVVNGGRRSYSESDYTYIDIVS 26
PP ++ G ++ Y Y + V+
Sbjct: 7 SPPEISHGVVAHMSDSYQYGEEVT 30
>d1ly2a1 g.18.1.1 (A:0-66) Complement receptor 2, cr2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 67
Score = 25.0 bits (54), Expect = 1.6
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 3 PPPVVNGGRRSYSESDYTYIDIVS 26
PP + GR SY + ++
Sbjct: 6 SPPPILNGRISYYSTPIAVGTVIR 29
>d1quba1 g.18.1.1 (A:1-62) beta2-glycoprotein I {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 24.7 bits (53), Expect = 1.9
Identities = 3/50 (6%), Positives = 8/50 (16%), Gaps = 12/50 (24%)
Query: 3 PPPVVNGGRRSYSESDYTYIDIV------------SQNDIYAGNDCRWSP 40
P + ++ Y + + W
Sbjct: 6 KPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPI 55
>d1g40a3 g.18.1.1 (A:127-184) Complement control protein {Vaccinia
virus [TaxId: 10245]}
Length = 58
Score = 24.5 bits (53), Expect = 2.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 3 PPPVVNGGRRSYSESDYTYIDIVS 26
PP ++ GR + E YT +V+
Sbjct: 5 SPPSISNGRHNGYEDFYTDGSVVT 28
>d1gkga2 g.18.1.1 (A:1023-1092) Complement receptor 1, cr1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 24.7 bits (53), Expect = 2.1
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 3 PPPVVNGGRRSYSESDYTYIDIVS 26
PP + NG S + ++ Y +V+
Sbjct: 6 PPTIANGDFISTNRENFHYGSVVT 29
>d1h03p2 g.18.1.1 (P:67-129) Complement decay-accelerating factor
(Daf, CD55) {Human (Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 24.2 bits (52), Expect = 2.6
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 3 PPPVVNGGRRSYSESDYTYIDIVS 26
PP ++ G Y Y V+
Sbjct: 5 APPQIDNGIIQGERDHYGYRQSVT 28
>d2ok5a3 g.18.1.1 (A:77-137) Complement factor B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 61
Score = 24.1 bits (52), Expect = 3.4
Identities = 5/24 (20%), Positives = 6/24 (25%)
Query: 3 PPPVVNGGRRSYSESDYTYIDIVS 26
P G Y D +S
Sbjct: 4 RPHDFENGEYWPRSPYYNVSDEIS 27
>d2d3qa1 d.58.4.14 (A:4-442) Decolorizing peroxidase DyP {Geotrichum
candidum [TaxId: 27317]}
Length = 439
Score = 25.1 bits (54), Expect = 4.3
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 55 QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRER---RRKD 97
+ +Q + F+ A + QQ E L R R K
Sbjct: 218 RHFQQKVPEFNAYTLANAIPANSAGNLTQQEGAEFLGARMFGRWKS 263
>d3chbd_ b.40.2.1 (D:) Cholera toxin {Vibrio cholerae [TaxId: 666]}
Length = 103
Score = 24.3 bits (52), Expect = 4.3
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 45 ICNEYCEYQNQEYQMNMEYFDGAAGEAFQR--------AAATF----CSRQQIALESLRE 92
+C EY + Q + +N + F A +R ATF Q I +
Sbjct: 8 LCAEY--HNTQIHTLNDKIFSYTESLAGKREMAIITFKNGATFQVEVPGSQHIDSQKKAI 65
Query: 93 RRRKDSRLNAFLTEAELNPLC 113
R KD+ A+LTEA++ LC
Sbjct: 66 ERMKDTLRIAYLTEAKVEKLC 86
>d1g40a4 g.18.1.1 (A:185-243) Complement control protein {Vaccinia
virus [TaxId: 10245]}
Length = 59
Score = 23.8 bits (51), Expect = 4.4
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 3 PPPVVNGGRRSYSESDYTYIDIVS 26
P + NG S + Y+Y D V
Sbjct: 5 HPTISNGYLSSGFKRSYSYNDNVD 28
>d2o39c1 g.18.1.1 (C:1-62) CD46 (membrane cofactor protein, MCP)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 23.5 bits (50), Expect = 4.6
Identities = 7/62 (11%), Positives = 13/62 (20%), Gaps = 17/62 (27%)
Query: 3 PPPVVNGGRRSYSESDYTYIDIVS-------------QNDIYAGNDCRWSPGYWKICNEY 49
PP + Y + V + W P + ++
Sbjct: 4 PPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLP----VSDDA 59
Query: 50 CE 51
C
Sbjct: 60 CY 61
>d1gpza2 g.18.1.1 (A:290-357) Complement C1R protease domains
{Human (Homo sapiens) [TaxId: 9606]}
Length = 68
Score = 23.6 bits (50), Expect = 5.2
Identities = 3/25 (12%), Positives = 6/25 (24%)
Query: 2 TPPPVVNGGRRSYSESDYTYIDIVS 26
P + + Y + D
Sbjct: 5 QPKTLDEFTIIQNLQPQYQFRDYFI 29
>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease,
catalytic domain {Klebsiella aerogenes [TaxId: 28451]}
Length = 385
Score = 24.7 bits (54), Expect = 6.4
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 15/61 (24%)
Query: 66 GAAGEAFQRAAATFCS---------------RQQIALESLRERRRKDSRLNAFLTEAELN 110
GA G A TF S ++ R ++ D N+ ++
Sbjct: 296 GALGSARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVD 355
Query: 111 P 111
Sbjct: 356 A 356
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 448
Score = 24.6 bits (53), Expect = 7.1
Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 41 GYWKICNEYCEYQNQE--YQMNMEYFDGAAGEAFQRAAATFCSRQQ 84
G W +C Y + E M Y DG A RA SRQ
Sbjct: 295 GSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQM 340
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.425
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 629,211
Number of extensions: 27636
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 26
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.2 bits)