Query psy11460
Match_columns 927
No_of_seqs 340 out of 975
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 19:01:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01130 CD36: CD36 family; I 100.0 5.1E-77 1.1E-81 690.0 32.0 317 2-320 72-466 (467)
2 KOG3776|consensus 100.0 4.5E-76 9.7E-81 676.1 30.6 321 2-324 83-474 (507)
3 PF01130 CD36: CD36 family; I 100.0 2.2E-70 4.7E-75 634.7 26.7 332 354-709 37-389 (467)
4 KOG3776|consensus 100.0 1.2E-68 2.5E-73 615.0 28.8 328 356-708 50-392 (507)
5 PF11271 DUF3068: Protein of u 97.2 0.0017 3.8E-08 72.4 10.2 156 112-317 141-300 (301)
6 PF11271 DUF3068: Protein of u 73.4 2.8 6.1E-05 47.0 3.3 43 564-608 141-183 (301)
7 KOG4682|consensus 28.3 7.6 0.00016 45.0 -3.1 62 741-802 275-336 (488)
8 KOG3381|consensus 16.3 1.5E+02 0.0033 30.3 3.5 28 877-904 78-107 (161)
9 PF05283 MGC-24: Multi-glycosy 14.7 1.5E+02 0.0033 31.3 3.2 25 298-322 162-186 (186)
10 PF15345 TMEM51: Transmembrane 13.6 1.2E+02 0.0025 33.2 2.0 24 301-324 6-29 (233)
No 1
>PF01130 CD36: CD36 family; InterPro: IPR002159 CD36 is a transmembrane, highly glycosylated, 88kDa glycoprotein expressed by monocytes, macrophages, platelets, microvascular endothelial cells and adipose tissues. Platelet glycoprotein IV (GP IV)(GPIIIb) (CD36 antigen) is also called GPIV, OKM5-antigen or PASIV. CD36 recognises oxidized low density lipoprotein, long chain fatty acids, anionic phospholipids, collagen types I, IV and V, thrombospondin (TSP) and Plasmodium falciparum infected erythrocytes. The recognition of apoptotic neutrophils is in co-operation with TSP and avb3. Other ligands may still be unknown. CD36 is a scavenger receptor for oxidized LDL and shed photoreceptor outer segments and in recognition and phagocytosis of apoptotic cells and is the cell adhesion molecule in platelet adhesion and aggregation, platelet-monocyte and platelet-tumor cell interaction []. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0007155 cell adhesion, 0016020 membrane
Probab=100.00 E-value=5.1e-77 Score=690.00 Aligned_cols=317 Identities=43% Similarity=0.830 Sum_probs=305.8
Q ss_pred CCCcEEecceEEEEEeeeeceEEccCC-eEEEEeeeeEEEccCCCCC-CCCCeEEcCCccee------------------
Q psy11460 2 QKVNIELGPLLSREDMQKVNIEFHDNG-TVTFQHYKILEFVPELSVA-PNNTRFILPNIPLL------------------ 61 (927)
Q Consensus 2 ~~~~~EiGPYvYrE~~~K~ni~f~~n~-TVsY~~~~~~~F~pe~S~~-~~~d~I~~pNip~l------------------ 61 (927)
+|+|+|+|||+|+|+++|+||+||+|+ ||+|+++|+|+|+||+|++ +++|.||+||+|++
T Consensus 72 kP~~~EvGPY~y~e~~~k~nv~~~~~~~tvsY~~~~~~~F~~~~S~~~~~~d~it~~N~~~l~~~~~~~~~~~~~~~~~~ 151 (467)
T PF01130_consen 72 KPNVQEVGPYVYREYREKVNVTFNDNGSTVSYRQKRTFFFDPELSCGCSEDDTITTPNIPLLGAASLVRNMSPFVKSLIN 151 (467)
T ss_pred CceEEEeCCEEEEeeeeeeeeEEcCCCcEEEEEeeeeEEeccccCCCCCccceEEeccHHHhhhhhhhccccHHHHHHHH
Confidence 689999999999999999999999988 9999999999999999997 89999999999886
Q ss_pred ------------------------------------------------------ccccccccEEEEcCCCCcccccceEe
Q psy11460 62 ------------------------------------------------------RNGTISEVQTIYTGHGGMENFGYMDK 87 (927)
Q Consensus 62 ------------------------------------------------------~NgT~dg~~tI~TG~~di~~~G~I~~ 87 (927)
+|+|.+|.|+|+||++|++++|+|.+
T Consensus 152 ~~l~~~~~~~fv~~tv~e~Lf~GY~dpll~~~~~~~~~~~~~~~~~~~fg~~~~~N~t~~~~~~v~TG~~d~~~~g~i~~ 231 (467)
T PF01130_consen 152 LLLNSLGEKLFVTRTVRELLFDGYEDPLLSLAKKLLDFLRPDLIPFDKFGLFYGRNGTYDGVYTVNTGKDDISKVGQIDS 231 (467)
T ss_pred HhhhccCCcceEeccHHHhhhccCchHHHHHHhhhhhhcCCccCCCCccccccccCCCCceeEEEECCCCChhhhceeeE
Confidence 58899999999999999999999999
Q ss_pred eCCccCCCCcCCCCCCceeCCCCCCCCCCCCCCCceEEEEeccceeEEEEEEeeeeeeCCeeEEEEecCCCCCCCCCCCC
Q psy11460 88 LNGLDHLPYWDEAPCNAIKASEGSFFPPRDLTKSDLVHVYDKDLCRIWPLRYRRDVEKDGLKAGYYTPDDEIFSPGESQP 167 (927)
Q Consensus 88 wnG~~~l~~W~~~~Cn~InGTDG~~fpP~~l~~~d~L~iF~~DlCRsl~l~y~~~~~~~GI~~~RY~~~~~~fd~~~~np 167 (927)
|||++++++|.+++||+|+||||++|||+ ++++++|++|++|+||+++++|+++++++||+++||++++++|++++.+|
T Consensus 232 ~ng~~~l~~w~~~~cn~i~GtdG~~fpP~-l~~~~~l~~f~~dlCRs~~l~y~~~~~~~Gi~~~rf~~~~~~f~~~~~~~ 310 (467)
T PF01130_consen 232 WNGSTSLTYWNGEECNMINGTDGSFFPPF-LTKDDTLYVFSSDLCRSLPLEYEEEVTVKGIPAYRFVLPPNVFDNGSNNP 310 (467)
T ss_pred ECCcccCCCcCCccccceeCCccCccCCC-CCCCceEEEEehhcceeEEEEEecceecCCeEEEEEEEChhHhcCcCcCc
Confidence 99999999999999999999999999996 89999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC---CCCCCceeeCCCCCCCCceeecccccccCChhhhhcccccCCCcccCcceEeeeccCCccceeeeEe
Q psy11460 168 ENKCYCPGQT---KCPPKGLQNISPCQFDAPVFLSFPHFYKADPELLDAVEGLTPNQEKHETFFKIQPKLGVPLEAAVRV 244 (927)
Q Consensus 168 ~n~CfC~~~~---~C~p~GlldlS~C~~GaPi~~S~PHFy~aDp~l~~~V~GL~Pd~ekH~t~idiEP~TGvpL~a~~Rl 244 (927)
+|+|||.+.. .|+|+|++|+|+|++|+|+++|+||||+|||+++++|+||+||+|+|++|+++||+||+||++++|+
T Consensus 311 ~n~c~C~~~~~~~~c~p~G~~~ls~C~~g~Pi~~S~PHF~~adp~~~~~v~Gl~Pd~~~H~~~~~iEP~tG~~l~~~~rl 390 (467)
T PF01130_consen 311 ENKCFCPKNSDECNCLPSGLLNLSPCQFGAPIFVSFPHFYNADPSLLEAVEGLNPDPEKHETYIDIEPTTGIPLQAAKRL 390 (467)
T ss_pred cccccCCCCCcccccCCcceEechhhcCCCCccccCcccccCChhhhhcCCCCCCCcccceeEEEeecccCeeeeeeEee
Confidence 9999998753 3999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecC-CccccccCCcceEEeeEEEeeccCCCChhHHHHHHHHhhcccchHhHHHHHHHHHHHHHHHHHHHHhh
Q psy11460 245 QLNLAVEE-SNIHVVRGFRSITFPIMWVEEGIGDLPPNIHRWIYLATSFAPNIAPILEYGFIIFGSLVLIVVFVRAY 320 (927)
Q Consensus 245 QiNl~v~~-~~i~~~~~~~~~ilPlfW~ee~~~~l~~~i~~~l~~~~~i~p~i~~~l~~~li~lGlilliv~~~~~y 320 (927)
|+|+.|++ +.+..+++++++++|+||+++++ ++++++++.++..+..++.++.++.|+++++|+++++++++.++
T Consensus 391 Q~N~~v~~~~~~~~~~~~~~~~~Pl~W~~~~~-~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~l~~~i~~~~ 466 (467)
T PF01130_consen 391 QINLLVRPTDGISIYKNLPNVIFPLFWFEEGA-ELPDELADMLKKQLFILPKIQFILQIILIALGIILLLLSIVLFI 466 (467)
T ss_pred eeeEEecCccccccccCCCcEEEeeEEeeeee-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 99999999 99999999999999999999998 79999999998889999999999999999999999999887654
No 2
>KOG3776|consensus
Probab=100.00 E-value=4.5e-76 Score=676.15 Aligned_cols=321 Identities=43% Similarity=0.789 Sum_probs=306.1
Q ss_pred CCCcEEecceEEEEEeeeeceEEccCCeEEEEe-eeeEEEccCCCCCCC-CCeEEcCCccee------------------
Q psy11460 2 QKVNIELGPLLSREDMQKVNIEFHDNGTVTFQH-YKILEFVPELSVAPN-NTRFILPNIPLL------------------ 61 (927)
Q Consensus 2 ~~~~~EiGPYvYrE~~~K~ni~f~~n~TVsY~~-~~~~~F~pe~S~~~~-~d~I~~pNip~l------------------ 61 (927)
+|+|+|+|||||+|.++|+|++|++|+|++|.+ +|+|+|+|++|++++ +|.|++||+|++
T Consensus 83 kp~v~EvGPyvy~E~~~K~~~~f~~n~tv~f~~~~k~~~F~p~~S~~~~~~d~I~~pN~~~~~a~~~~~~~~~~~~~~~~ 162 (507)
T KOG3776|consen 83 KPNVQEVGPYVYREIEQKVNIDFNENNTVSFYQNRKTYVFNPEESVGDCKDDKITVPNIPALGAATSVKREQFLRLAISI 162 (507)
T ss_pred CCceEeeCCeEEEEEecccceeeccCCcEEEEeeccEEEechhhcCCCcCcCeEEecCchhhhhhhhhhhhHHHHHHHHH
Confidence 689999999999999999999999999987777 999999999999877 799999998843
Q ss_pred -------------------------------------------------ccccccccEEEEcCCCCcccccceEeeCCcc
Q psy11460 62 -------------------------------------------------RNGTISEVQTIYTGHGGMENFGYMDKLNGLD 92 (927)
Q Consensus 62 -------------------------------------------------~NgT~dg~~tI~TG~~di~~~G~I~~wnG~~ 92 (927)
+|||.||.|+|+||++|++++|+|++|||.+
T Consensus 163 ~~~~~~~~~f~~~tV~e~Lf~GYeDpll~l~~~~~~~~~~~~r~G~~~~~Ngt~d~~y~V~tG~dd~~k~g~I~~wng~~ 242 (507)
T KOG3776|consen 163 ALTILGEKPFVTVTVGELLFDGYEDPLLSLINRFVPIKPPSPRFGLFYGYNGTSDGVYTVNTGKDDISKFGQIDTWNGLT 242 (507)
T ss_pred HHHHhCCCcceEeeHHHHHHhhcccHHHHHHhhcCCcCCcccceeeecccCCCccccEEEecCCCCHHHCeeeeEECCcc
Confidence 8999999999999999999999999999999
Q ss_pred CCCCcCCCCCCceeCCCCCCCCCCCCCCCceEEEEeccceeEEEEEEeeeeeeCCeeEEEEecCCCCCCCCCCCCCCCCC
Q psy11460 93 HLPYWDEAPCNAIKASEGSFFPPRDLTKSDLVHVYDKDLCRIWPLRYRRDVEKDGLKAGYYTPDDEIFSPGESQPENKCY 172 (927)
Q Consensus 93 ~l~~W~~~~Cn~InGTDG~~fpP~~l~~~d~L~iF~~DlCRsl~l~y~~~~~~~GI~~~RY~~~~~~fd~~~~np~n~Cf 172 (927)
+++||.+++|++|+||||++|||+ +++++++++|.+|+||+++++|+++++++||++|||+++.+.||++..+|++.||
T Consensus 243 ~l~~W~~~~c~~I~Gtdgs~FpP~-l~k~d~l~if~~~~CRsi~l~y~~~~~~~Gi~~~rf~~p~~~~d~~~~~~~~~Cy 321 (507)
T KOG3776|consen 243 HLPWWETDECNMINGTDGSLFPPF-LQKEDELYIFSSDLCRSIPLTYSETVTVNGIPAYRFVVPEDSFDNTLDNPDGFCY 321 (507)
T ss_pred cCCccCccccccccCCCcccCCCc-cCCCCeeEEEchhhhcceEeEeeeEEEECCccceeeccchhhcCCCCCCCCcccc
Confidence 999999999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-CCCCCCceeeCCCCCCCCceeecccccccCChhhhhcccccCCCcccCcceEeeeccCCccceeeeEeEEEEEec
Q psy11460 173 CPGQ-TKCPPKGLQNISPCQFDAPVFLSFPHFYKADPELLDAVEGLTPNQEKHETFFKIQPKLGVPLEAAVRVQLNLAVE 251 (927)
Q Consensus 173 C~~~-~~C~p~GlldlS~C~~GaPi~~S~PHFy~aDp~l~~~V~GL~Pd~ekH~t~idiEP~TGvpL~a~~RlQiNl~v~ 251 (927)
|.+. .+|+|+|++|+|+|++|+|+++|+||||+|||+|+++|+||+|++|+|++|++|||.||+||++++|+|+|+.|.
T Consensus 322 ~~~~~~~Clp~G~~niS~C~~~~pv~~S~PHFy~adp~~~~~v~Gl~P~~e~He~~~dieP~tG~plq~~~RlQiNl~v~ 401 (507)
T KOG3776|consen 322 CTEKKPNCLPSGVLNISQCQGGAPVYLSFPHFYLADPVLVEAVEGLNPNKEKHETYFDIEPKTGTPLQAAKRLQINLPVE 401 (507)
T ss_pred CccccCCCCccCceeehhhcCCCcceecCchhccCCHhHHhcCCCCCCChhhCceEEEeccCCCCeeEEeEEEEEEEEec
Confidence 9753 359999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CccccccCCcceEEeeEEEeeccCCCChhHHHHHHHHhhcccchHhHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy11460 252 E-SNIHVVRGFRSITFPIMWVEEGIGDLPPNIHRWIYLATSFAPNIAPILEYGFIIFGSLVLIVVFVRAYKSLV 324 (927)
Q Consensus 252 ~-~~i~~~~~~~~~ilPlfW~ee~~~~l~~~i~~~l~~~~~i~p~i~~~l~~~li~lGlilliv~~~~~yk~~~ 324 (927)
+ +++..+++++++++|+||+||++. +++++.+++++++...+.++..+.++++++|++++++.++..+++..
T Consensus 402 ~~~~~~~~~~~~~~i~Pl~W~~e~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~ 474 (507)
T KOG3776|consen 402 PVKGIRSMSNLPNVIIPLFWLEEGVG-LSDETLNLIKLGLVLKPNIVLYLLYLLLLLGVVLLALIVFCVIRSLV 474 (507)
T ss_pred ccCCccccccccceEeeEEEEeeccC-ccHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhheeEecccc
Confidence 9 999999999999999999999985 99999999999988889999999999999999999888887776544
No 3
>PF01130 CD36: CD36 family; InterPro: IPR002159 CD36 is a transmembrane, highly glycosylated, 88kDa glycoprotein expressed by monocytes, macrophages, platelets, microvascular endothelial cells and adipose tissues. Platelet glycoprotein IV (GP IV)(GPIIIb) (CD36 antigen) is also called GPIV, OKM5-antigen or PASIV. CD36 recognises oxidized low density lipoprotein, long chain fatty acids, anionic phospholipids, collagen types I, IV and V, thrombospondin (TSP) and Plasmodium falciparum infected erythrocytes. The recognition of apoptotic neutrophils is in co-operation with TSP and avb3. Other ligands may still be unknown. CD36 is a scavenger receptor for oxidized LDL and shed photoreceptor outer segments and in recognition and phagocytosis of apoptotic cells and is the cell adhesion molecule in platelet adhesion and aggregation, platelet-monocyte and platelet-tumor cell interaction []. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0007155 cell adhesion, 0016020 membrane
Probab=100.00 E-value=2.2e-70 Score=634.70 Aligned_cols=332 Identities=32% Similarity=0.561 Sum_probs=302.6
Q ss_pred ccccccccccCCcceEEEEeeeccCChHhHhhhcCCCCcccC--cccEEEEeeecCccccCCe-EEEEE------Eeeec
Q psy11460 354 IRDSYSLLGNHNAPVFLSFPHFYKADPELLDAVEGLTPNQEK--HETFFKIQPKLGVPLEAAV-RVQLN------LAVEE 424 (927)
Q Consensus 354 ~s~~y~~W~~pp~PiylsfY~FNvTNPeev~~veG~kPn~ee--pytY~e~epk~gi~~~~~~-tvq~n------f~~~~ 424 (927)
++.+|+.|.++|+|+++++|+||+|||+|+++ .|.||+++| ||+|+|.+.|.++.|+++. +|+|+ |.++.
T Consensus 37 ~s~~~~~W~~~p~p~~~~~y~fNvTNp~ev~~-~g~kP~~~EvGPY~y~e~~~k~nv~~~~~~~tvsY~~~~~~~F~~~~ 115 (467)
T PF01130_consen 37 GSDSYDNWKKPPVPIYFKFYFFNVTNPEEVLN-GGAKPNVQEVGPYVYREYREKVNVTFNDNGSTVSYRQKRTFFFDPEL 115 (467)
T ss_pred CChhHhhhhcCCCccEEEEEEEeccCHHHHhC-cCCCceEEEeCCEEEEeeeeeeeeEEcCCCcEEEEEeeeeEEecccc
Confidence 34799999999999999999999999999985 399999888 9999999999999998665 88764 44556
Q ss_pred cCc-ceeccceecccchHHHHHHHhhhhhcchhhHHHHHHHHHhhcCCCceEeeeeceeec-cCCchHHHhhhh----cC
Q psy11460 425 SNI-HVVRGFRSITFPIMWVEETLTSQANALKPLMKTGVSLALRMTSMKPFVSITAEELVF-GYDDTLTSLANR----FF 498 (927)
Q Consensus 425 s~~-~~~d~I~tvniPll~i~~tltSl~~~~~~~vk~~i~~~l~~~~~~pFvt~TV~elLf-GY~DpLL~~~~~----~~ 498 (927)
|++ +.+|.|+++|+|++.+...+. .+.++++.+++.+++..++++|+++||+|+|| ||+||+++.+++ +.
T Consensus 116 S~~~~~~d~it~~N~~~l~~~~~~~----~~~~~~~~~~~~~l~~~~~~~fv~~tv~e~Lf~GY~dpll~~~~~~~~~~~ 191 (467)
T PF01130_consen 116 SCGCSEDDTITTPNIPLLGAASLVR----NMSPFVKSLINLLLNSLGEKLFVTRTVRELLFDGYEDPLLSLAKKLLDFLR 191 (467)
T ss_pred CCCCCccceEEeccHHHhhhhhhhc----cccHHHHHHHHHhhhccCCcceEeccHHHhhhccCchHHHHHHhhhhhhcC
Confidence 777 678999999999887776543 46789999999999999999999999999999 999999999998 55
Q ss_pred CCCCCCCCccceecccCCcccccEEEEcCCCCCcceeeEEeeCCCCCCCCcCCCCCCceeCCCCCCCCCCCCCCCceEEE
Q psy11460 499 PKGKRPPRKMGLFLGRNGTISEVQTIYTGHGGMENFGYMDKLNGLDHLPYWDEAPCNAIKASEGSFFPPRDLTKSDLVHV 578 (927)
Q Consensus 499 P~~~~p~~kfGlf~~~N~T~dg~~tV~TG~~d~~~~G~I~~wnG~t~L~~W~~~~Cn~I~GTDG~~FpP~~l~k~d~L~i 578 (927)
|.. .+.++||||.++|+|.+|.|+|+||++|++++|+|.+|||++++++|.+++||+|+||||++|||+ +++++.|++
T Consensus 192 ~~~-~~~~~fg~~~~~N~t~~~~~~v~TG~~d~~~~g~i~~~ng~~~l~~w~~~~cn~i~GtdG~~fpP~-l~~~~~l~~ 269 (467)
T PF01130_consen 192 PDL-IPFDKFGLFYGRNGTYDGVYTVNTGKDDISKVGQIDSWNGSTSLTYWNGEECNMINGTDGSFFPPF-LTKDDTLYV 269 (467)
T ss_pred Ccc-CCCCccccccccCCCCceeEEEECCCCChhhhceeeEECCcccCCCcCCccccceeCCccCccCCC-CCCCceEEE
Confidence 553 368999999999999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred eccccceeeEEEEeeeEEEcCeEeEEEecCCCCCCCCCCCCCCCcCCCCCCC---CCccceeeccccCCCccccccccce
Q psy11460 579 YDKDLCRIWPLRYRRDVEKDGLKAGYYTPDDEIFSPGESQPENKCYCPGQTK---CPPKGLQNISPCQFANLLQSNLSNS 655 (927)
Q Consensus 579 F~~dlCRsl~L~y~~e~~~~GI~~yRY~~~~~~fdn~~~~p~N~cfC~~~~~---Clp~GlldlS~C~~G~~~~s~fp~f 655 (927)
|++|+|||++++|+++++++||+++||++++++|++++.+|+|+|||.+... |+|+|++|+|+|++|+ |++
T Consensus 270 f~~dlCRs~~l~y~~~~~~~Gi~~~rf~~~~~~f~~~~~~~~n~c~C~~~~~~~~c~p~G~~~ls~C~~g~------Pi~ 343 (467)
T PF01130_consen 270 FSSDLCRSLPLEYEEEVTVKGIPAYRFVLPPNVFDNGSNNPENKCFCPKNSDECNCLPSGLLNLSPCQFGA------PIF 343 (467)
T ss_pred EehhcceeEEEEEecceecCCeEEEEEEEChhHhcCcCcCccccccCCCCCcccccCCcceEechhhcCCC------Ccc
Confidence 9999999999999999999999999999999999999999999999987643 9999999999999894 569
Q ss_pred eccCccccccccccccccCCCCCCcccccCCCCCccccCcccc---ccccccccccc
Q psy11460 656 LNLPNLFVVSRYYDILKRDRVVPSSWLDKGLDASWKTHSHEGD---NLGHLRQHQID 709 (927)
Q Consensus 656 vS~PhFy~~d~~y~~~~~~~~~~~~~~v~gl~p~~~~h~~~~d---~~~~~~~~~~~ 709 (927)
+|+||||+||++|.+ .|.||+|+.++|++.+| .||..+|+.+.
T Consensus 344 ~S~PHF~~adp~~~~-----------~v~Gl~Pd~~~H~~~~~iEP~tG~~l~~~~r 389 (467)
T PF01130_consen 344 VSFPHFYNADPSLLE-----------AVEGLNPDPEKHETYIDIEPTTGIPLQAAKR 389 (467)
T ss_pred ccCcccccCChhhhh-----------cCCCCCCCcccceeEEEeecccCeeeeeeEe
Confidence 999999999999855 99999999999999999 48888887644
No 4
>KOG3776|consensus
Probab=100.00 E-value=1.2e-68 Score=614.97 Aligned_cols=328 Identities=31% Similarity=0.573 Sum_probs=298.8
Q ss_pred ccccccccCCcceEEEEeeeccCChHhHhhhcCCCCcccC--cccEEEEeeecCccccCCeEEE-------EEEeeeccC
Q psy11460 356 DSYSLLGNHNAPVFLSFPHFYKADPELLDAVEGLTPNQEK--HETFFKIQPKLGVPLEAAVRVQ-------LNLAVEESN 426 (927)
Q Consensus 356 ~~y~~W~~pp~PiylsfY~FNvTNPeev~~veG~kPn~ee--pytY~e~epk~gi~~~~~~tvq-------~nf~~~~s~ 426 (927)
.+++.|.+||+|+++++|+||||||+|++. .|.||+++| ||+|+|.+.|.++.++++.++. +.|.++.|+
T Consensus 50 ~~~~~W~~pp~~~~~~~yiFNvTNpde~~~-~~~kp~v~EvGPyvy~E~~~K~~~~f~~n~tv~f~~~~k~~~F~p~~S~ 128 (507)
T KOG3776|consen 50 DAFESWLNPPYPIYLNFYIFNVTNPDEFLS-GGAKPNVQEVGPYVYREIEQKVNIDFNENNTVSFYQNRKTYVFNPEESV 128 (507)
T ss_pred hhhhhhhcCCCccEEEEEEEecCCHHHhhC-cCCCCceEeeCCeEEEEEecccceeeccCCcEEEEeeccEEEechhhcC
Confidence 889999999999999999999999999985 389999888 9999999999999777665543 236667788
Q ss_pred cce-eccceecccchHHHHHHHhhhhhcchhhHHHHHHHHHhhcCCCceEeeeeceeec-cCCchHHHhhhhcCCCCCCC
Q psy11460 427 IHV-VRGFRSITFPIMWVEETLTSQANALKPLMKTGVSLALRMTSMKPFVSITAEELVF-GYDDTLTSLANRFFPKGKRP 504 (927)
Q Consensus 427 ~~~-~d~I~tvniPll~i~~tltSl~~~~~~~vk~~i~~~l~~~~~~pFvt~TV~elLf-GY~DpLL~~~~~~~P~~~~p 504 (927)
+.+ .|.|+.+|+|++.++..+. ... +++.++++++..+++++|+++||+|+|| ||+|||+++++++.| ..++
T Consensus 129 ~~~~~d~I~~pN~~~~~a~~~~~----~~~-~~~~~~~~~~~~~~~~~f~~~tV~e~Lf~GYeDpll~l~~~~~~-~~~~ 202 (507)
T KOG3776|consen 129 GDCKDDKITVPNIPALGAATSVK----REQ-FLRLAISIALTILGEKPFVTVTVGELLFDGYEDPLLSLINRFVP-IKPP 202 (507)
T ss_pred CCcCcCeEEecCchhhhhhhhhh----hhH-HHHHHHHHHHHHhCCCcceEeeHHHHHHhhcccHHHHHHhhcCC-cCCc
Confidence 877 6888999999876654433 333 8899999999999999999999999999 999999999999777 4457
Q ss_pred CCccceecccCCcccccEEEEcCCCCCcceeeEEeeCCCCCCCCcCCCCCCceeCCCCCCCCCCCCCCCceEEEeccccc
Q psy11460 505 PRKMGLFLGRNGTISEVQTIYTGHGGMENFGYMDKLNGLDHLPYWDEAPCNAIKASEGSFFPPRDLTKSDLVHVYDKDLC 584 (927)
Q Consensus 505 ~~kfGlf~~~N~T~dg~~tV~TG~~d~~~~G~I~~wnG~t~L~~W~~~~Cn~I~GTDG~~FpP~~l~k~d~L~iF~~dlC 584 (927)
.++||+|+.+|||.||.|+|+||++|++++|+|.+|||.++++||.+++|++|+||||++|||+ ++++|++++|.+|+|
T Consensus 203 ~~r~G~~~~~Ngt~d~~y~V~tG~dd~~k~g~I~~wng~~~l~~W~~~~c~~I~Gtdgs~FpP~-l~k~d~l~if~~~~C 281 (507)
T KOG3776|consen 203 SPRFGLFYGYNGTSDGVYTVNTGKDDISKFGQIDTWNGLTHLPWWETDECNMINGTDGSLFPPF-LQKEDELYIFSSDLC 281 (507)
T ss_pred ccceeeecccCCCccccEEEecCCCCHHHCeeeeEECCcccCCccCccccccccCCCcccCCCc-cCCCCeeEEEchhhh
Confidence 8999999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred eeeEEEEeeeEEEcCeEeEEEecCCCCCCCCCCCCCCCcCCCCC-CCCCccceeeccccCCCccccccccceeccCcccc
Q psy11460 585 RIWPLRYRRDVEKDGLKAGYYTPDDEIFSPGESQPENKCYCPGQ-TKCPPKGLQNISPCQFANLLQSNLSNSLNLPNLFV 663 (927)
Q Consensus 585 Rsl~L~y~~e~~~~GI~~yRY~~~~~~fdn~~~~p~N~cfC~~~-~~Clp~GlldlS~C~~G~~~~s~fp~fvS~PhFy~ 663 (927)
|+++++|+++++++||++|||+++.+.||++..+|++.|||.+. .+|+|+|++|+|+|++|+| +++|+||||+
T Consensus 282 Rsi~l~y~~~~~~~Gi~~~rf~~p~~~~d~~~~~~~~~Cy~~~~~~~Clp~G~~niS~C~~~~p------v~~S~PHFy~ 355 (507)
T KOG3776|consen 282 RSIPLTYSETVTVNGIPAYRFVVPEDSFDNTLDNPDGFCYCTEKKPNCLPSGVLNISQCQGGAP------VYLSFPHFYL 355 (507)
T ss_pred cceEeEeeeEEEECCccceeeccchhhcCCCCCCCCccccCccccCCCCccCceeehhhcCCCc------ceecCchhcc
Confidence 99999999999999999999999999999999999999999753 4599999999999999965 5899999999
Q ss_pred ccccccccccCCCCCCcccccCCCCCccccCcccc---cccccccccc
Q psy11460 664 VSRYYDILKRDRVVPSSWLDKGLDASWKTHSHEGD---NLGHLRQHQI 708 (927)
Q Consensus 664 ~d~~y~~~~~~~~~~~~~~v~gl~p~~~~h~~~~d---~~~~~~~~~~ 708 (927)
||+.|.+ .|+||+|+.|+|+..+| .+|..+|+++
T Consensus 356 adp~~~~-----------~v~Gl~P~~e~He~~~dieP~tG~plq~~~ 392 (507)
T KOG3776|consen 356 ADPVLVE-----------AVEGLNPNKEKHETYFDIEPKTGTPLQAAK 392 (507)
T ss_pred CCHhHHh-----------cCCCCCCChhhCceEEEeccCCCCeeEEeE
Confidence 9998854 99999999999999999 6999999874
No 5
>PF11271 DUF3068: Protein of unknown function (DUF3068); InterPro: IPR021424 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=97.18 E-value=0.0017 Score=72.42 Aligned_cols=156 Identities=15% Similarity=0.162 Sum_probs=86.9
Q ss_pred CCCCCCCCCCceEEEEeccceeEEEEEEeeeeeeCCeeEEEEec--CCCCCCCCCCCCCCCCCCCCCCCCCCCceeeCCC
Q psy11460 112 FFPPRDLTKSDLVHVYDKDLCRIWPLRYRRDVEKDGLKAGYYTP--DDEIFSPGESQPENKCYCPGQTKCPPKGLQNISP 189 (927)
Q Consensus 112 ~fpP~~l~~~d~L~iF~~DlCRsl~l~y~~~~~~~GI~~~RY~~--~~~~fd~~~~np~n~CfC~~~~~C~p~GlldlS~ 189 (927)
.||++ .+.....+|.+.+-++.+++|.++.+++|+++|||+- ++..... .+.+ ..-++.-+
T Consensus 141 kFPf~--tek~~Y~~fD~~~r~a~p~~f~ge~~v~G~~vY~F~q~i~~t~l~~---~~~~-------~~~~~~~~----- 203 (301)
T PF11271_consen 141 KFPFD--TEKRSYPYFDPTTRTAVPADFVGEEEVDGREVYRFEQEIPPTDLAS---DEDS-------TRTLPASL----- 203 (301)
T ss_pred ECCCC--CCCCCcccCCcccCcccceEeccceEECCEEEEEEEEEeCCcccCc---cccc-------cccccccc-----
Confidence 37764 4456699999999999999999999999999999984 2222220 0000 00000000
Q ss_pred CCCCCceeecccccccCChhhhhcccccCCCcccCcc--eEeeeccCCccceeeeEeEEEEEecCCccccccCCcceEEe
Q psy11460 190 CQFDAPVFLSFPHFYKADPELLDAVEGLTPNQEKHET--FFKIQPKLGVPLEAAVRVQLNLAVEESNIHVVRGFRSITFP 267 (927)
Q Consensus 190 C~~GaPi~~S~PHFy~aDp~l~~~V~GL~Pd~ekH~t--~idiEP~TGvpL~a~~RlQiNl~v~~~~i~~~~~~~~~ilP 267 (927)
.+.++-+ . --|.. -+.|||.||+++++...++.-+...... .+.-.-.-
T Consensus 204 --~~~~v~~--~--------------------~~y~~~r~lwVeP~TG~iV~~~e~~~~~~~~~~~~-----~~~~l~~~ 254 (301)
T PF11271_consen 204 --PGGSVTM--D--------------------RYYSATRTLWVEPVTGVIVDVEEDQHDYYADDDGE-----RRTVLDAD 254 (301)
T ss_pred --CCCccEE--E--------------------EEEeeeEEEEEcCCCCcEEeeEEEEEEEEecCCCc-----eEEEEEEE
Confidence 0111111 0 01111 6889999999999876554433222221 11222233
Q ss_pred eEEEeeccCCCChhHHHHHHHHhhcccchHhHHHHHHHHHHHHHHHHHHH
Q psy11460 268 IMWVEEGIGDLPPNIHRWIYLATSFAPNIAPILEYGFIIFGSLVLIVVFV 317 (927)
Q Consensus 268 lfW~ee~~~~l~~~i~~~l~~~~~i~p~i~~~l~~~li~lGlilliv~~~ 317 (927)
+-|-+++++.+-++.+. ....+..+..++.|++.++|+++++++++
T Consensus 255 ~~~~e~t~~~~~~~A~~----~~~~l~~~~~~~P~~~~vlG~vll~~g~~ 300 (301)
T PF11271_consen 255 FRYDEETVAALVDQAKD----VRSQLRLWGRWVPIVLGVLGVVLLLVGLV 300 (301)
T ss_pred EecCHHHHHHHHHHHhh----ccceeeeeeeeHHHHHHHHHHHHHHHHhh
Confidence 33444433222222222 22222234567889999999999988875
No 6
>PF11271 DUF3068: Protein of unknown function (DUF3068); InterPro: IPR021424 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=73.42 E-value=2.8 Score=47.03 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=36.6
Q ss_pred CCCCCCCCCCceEEEeccccceeeEEEEeeeEEEcCeEeEEEecC
Q psy11460 564 FFPPRDLTKSDLVHVYDKDLCRIWPLRYRRDVEKDGLKAGYYTPD 608 (927)
Q Consensus 564 ~FpP~~l~k~d~L~iF~~dlCRsl~L~y~~e~~~~GI~~yRY~~~ 608 (927)
.||+. .+...-.+|-+.+-++.+++|.++.+++|+++|||+-.
T Consensus 141 kFPf~--tek~~Y~~fD~~~r~a~p~~f~ge~~v~G~~vY~F~q~ 183 (301)
T PF11271_consen 141 KFPFD--TEKRSYPYFDPTTRTAVPADFVGEEEVDGREVYRFEQE 183 (301)
T ss_pred ECCCC--CCCCCcccCCcccCcccceEeccceEECCEEEEEEEEE
Confidence 35553 44556889999999999999999999999999999963
No 7
>KOG4682|consensus
Probab=28.31 E-value=7.6 Score=44.97 Aligned_cols=62 Identities=29% Similarity=0.588 Sum_probs=50.3
Q ss_pred eecceeeecccCCcchhhhhhcCCCceEEeeehhhhhccccccCccccccccCccceeeEEE
Q psy11460 741 YIGLSFLESARGKEFVSLFEILNLPNLFVVSRYYDILKRDRVLPSSWLDKGLDASWKTHVTY 802 (927)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (927)
.-+..|++-.-|+.++++|.-|.|--+.--+.=..|++.|...|++|||.-..+.|-.-..-
T Consensus 275 ~e~~~fl~t~~g~~y~~vF~~LRlq~it~~~~dlkii~~dniiP~ewld~vt~nhw~ALl~~ 336 (488)
T KOG4682|consen 275 FEGMAFLETEIGRPYVSVFRHLRLQYITSDLADLKIIEQDNIIPSEWLDSVTKNHWFALLRA 336 (488)
T ss_pred hhhchhhccccCCchHHHHHHHHHHHHHhccchhhhhhhcCcCcHHHHHHHHHHHHHHHHhc
Confidence 34667899999999999999998876655555667899999999999999888888654433
No 8
>KOG3381|consensus
Probab=16.30 E-value=1.5e+02 Score=30.31 Aligned_cols=28 Identities=32% Similarity=0.578 Sum_probs=22.7
Q ss_pred eEEEEEeCCCCCceeheeee--eEEEeecc
Q psy11460 877 LEMTVKVKPDVPHILIPTLL--YLRVKLSS 904 (927)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 904 (927)
-.+.|+.+|-+||--++||+ -+||||..
T Consensus 78 s~V~i~ftPTipHCSmaTlIGLcIrVkl~R 107 (161)
T KOG3381|consen 78 SYVRITFTPTIPHCSMATLIGLCIRVKLLR 107 (161)
T ss_pred eEEEEEeccCCCcchHHhhhhheeeeeeee
Confidence 35678889999999999984 56888864
No 9
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=14.69 E-value=1.5e+02 Score=31.33 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11460 298 PILEYGFIIFGSLVLIVVFVRAYKS 322 (927)
Q Consensus 298 ~~l~~~li~lGlilliv~~~~~yk~ 322 (927)
.+++-+.+++|++.+++.+++.||.
T Consensus 162 SFiGGIVL~LGv~aI~ff~~KF~ks 186 (186)
T PF05283_consen 162 SFIGGIVLTLGVLAIIFFLYKFCKS 186 (186)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhccC
Confidence 4445677788988888888888874
No 10
>PF15345 TMEM51: Transmembrane protein 51
Probab=13.65 E-value=1.2e+02 Score=33.17 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q psy11460 301 EYGFIIFGSLVLIVVFVRAYKSLV 324 (927)
Q Consensus 301 ~~~li~lGlilliv~~~~~yk~~~ 324 (927)
.|.|.++|+.|++++++++.++.+
T Consensus 6 hYAL~AiG~Gml~LGiiM~vW~~V 29 (233)
T PF15345_consen 6 HYALTAIGVGMLALGIIMIVWNLV 29 (233)
T ss_pred hHHHHHHhHhHHHHhhHheeeeec
Confidence 578888888888888887555444
Done!