Query psy11460
Match_columns 927
No_of_seqs 340 out of 975
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 19:01:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lr2_A Immunoglobulin G-bindin 7.9 1E+02 0.0034 26.9 0.5 26 757-782 25-52 (88)
2 2knc_A Integrin alpha-IIB; tra 7.5 3.6E+02 0.012 21.9 3.6 24 303-326 17-40 (54)
3 2l8s_A Integrin alpha-1; trans 7.5 3.6E+02 0.012 22.0 3.5 25 302-326 13-37 (54)
4 2k1a_A Integrin alpha-IIB; sin 6.5 5.1E+02 0.018 19.9 3.8 24 303-326 15-38 (42)
5 2kxr_A Tight junction protein 6.3 1.4E+02 0.0048 27.9 0.7 27 178-212 69-95 (118)
6 2k1k_A Ephrin type-A receptor 6.2 5.1E+02 0.018 19.4 3.6 17 305-321 20-36 (38)
7 2ko4_B General control protein 5.0 1.7E+02 0.0057 21.5 0.2 9 752-760 17-25 (34)
8 2kxs_A Tight junction protein 4.4 2.1E+02 0.0071 27.8 0.5 27 178-212 83-109 (146)
9 1dee_G Immunoglobulin G bindin 4.3 1.7E+02 0.0059 23.7 -0.1 12 758-769 9-20 (54)
10 1zda_A Mini protein A domain, 4.0 2.3E+02 0.0079 21.4 0.4 12 757-768 13-24 (38)
No 1
>2lr2_A Immunoglobulin G-binding protein A; Z domain, lanthanide binding TAG, de novo protein; NMR {Artificial gene}
Probab=7.88 E-value=1e+02 Score=26.90 Aligned_cols=26 Identities=42% Similarity=0.669 Sum_probs=19.6
Q ss_pred hhhhhcCCCceEEeee--hhhhhccccc
Q psy11460 757 SLFEILNLPNLFVVSR--YYDILKRDRV 782 (927)
Q Consensus 757 ~~~~~~~~~~~~~~~~--~~~~~~~~~~ 782 (927)
..+|||+||||----| |+..||.|..
T Consensus 25 AfyEIl~lPNLneeQrnafiqSLkDDp~ 52 (88)
T 2lr2_A 25 AFYEILHLPNLNEEQRNAFIQSLKDDSY 52 (88)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHhccCcc
Confidence 3579999999965443 7888888753
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=7.52 E-value=3.6e+02 Score=21.88 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccccc
Q psy11460 303 GFIIFGSLVLIVVFVRAYKSLVFT 326 (927)
Q Consensus 303 ~li~lGlilliv~~~~~yk~~~~~ 326 (927)
+.++.|++++++.++..||-.-|.
T Consensus 17 ~svl~GLllL~li~~~LwK~GFFk 40 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMWKVGFFK 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCccc
Confidence 445567777777777778777665
No 3
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=7.45 E-value=3.6e+02 Score=21.95 Aligned_cols=25 Identities=20% Similarity=0.273 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccc
Q psy11460 302 YGFIIFGSLVLIVVFVRAYKSLVFT 326 (927)
Q Consensus 302 ~~li~lGlilliv~~~~~yk~~~~~ 326 (927)
.+.++.|++++++.++..||-.-|.
T Consensus 13 i~svl~GLLLL~Lii~~LwK~GFFK 37 (54)
T 2l8s_A 13 LLSAFAGLLLLMLLILALWKIGFFK 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccc
Confidence 3455667777777777778776655
No 4
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=6.45 E-value=5.1e+02 Score=19.91 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccccc
Q psy11460 303 GFIIFGSLVLIVVFVRAYKSLVFT 326 (927)
Q Consensus 303 ~li~lGlilliv~~~~~yk~~~~~ 326 (927)
+.++.|++++++.++..||-.-|.
T Consensus 15 ~s~l~GLllL~li~~~LwK~GFFk 38 (42)
T 2k1a_A 15 VGVLGGLLLLTILVLAMWKVGFFK 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCccc
Confidence 445567777777777777766543
No 5
>2kxr_A Tight junction protein ZO-1; beta-barrel, protein binding; NMR {Homo sapiens}
Probab=6.31 E-value=1.4e+02 Score=27.95 Aligned_cols=27 Identities=33% Similarity=0.560 Sum_probs=19.5
Q ss_pred CCCCCceeeCCCCCCCCceeecccccccCChhhhh
Q psy11460 178 KCPPKGLQNISPCQFDAPVFLSFPHFYKADPELLD 212 (927)
Q Consensus 178 ~C~p~GlldlS~C~~GaPi~~S~PHFy~aDp~l~~ 212 (927)
.|-|.|+. +.-|+++++||+ |.+.+.+
T Consensus 69 ~cGP~G~~------F~~PViL~iPHc--a~~~W~~ 95 (118)
T 2kxr_A 69 AAGPHGLK------FLKPVELRLPHC--DPKTWQN 95 (118)
T ss_dssp ECSSSCCE------EEEEEEEEECCC--CTTSSCS
T ss_pred EECCCCCc------CcCCEEEEcCCC--Cccchhh
Confidence 47788875 567999999999 4455543
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=6.23 E-value=5.1e+02 Score=19.37 Aligned_cols=17 Identities=18% Similarity=0.489 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy11460 305 IIFGSLVLIVVFVRAYK 321 (927)
Q Consensus 305 i~lGlilliv~~~~~yk 321 (927)
.++|+++++..++..++
T Consensus 20 ~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 20 LLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHee
Confidence 34455544444444443
No 7
>2ko4_B General control protein GCN4; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_B
Probab=5.00 E-value=1.7e+02 Score=21.54 Aligned_cols=9 Identities=56% Similarity=0.988 Sum_probs=7.2
Q ss_pred CCcchhhhh
Q psy11460 752 GKEFVSLFE 760 (927)
Q Consensus 752 ~~~~~~~~~ 760 (927)
-++|+|||.
T Consensus 17 ~~~WtSLFD 25 (34)
T 2ko4_B 17 SKEWTSLFD 25 (34)
T ss_dssp SGGGTTTTS
T ss_pred cchhhhhcc
Confidence 678999885
No 8
>2kxs_A Tight junction protein ZO-1, linker, peptide of M enriched ZO-associated protein; beta-barrel, protein binding; NMR {Homo sapiens}
Probab=4.36 E-value=2.1e+02 Score=27.84 Aligned_cols=27 Identities=37% Similarity=0.683 Sum_probs=19.9
Q ss_pred CCCCCceeeCCCCCCCCceeecccccccCChhhhh
Q psy11460 178 KCPPKGLQNISPCQFDAPVFLSFPHFYKADPELLD 212 (927)
Q Consensus 178 ~C~p~GlldlS~C~~GaPi~~S~PHFy~aDp~l~~ 212 (927)
.|-|.|+. +.-|+++++||+ |.+.+.+
T Consensus 83 ~CGP~G~~------F~kPViL~iPHc--A~~~W~~ 109 (146)
T 2kxs_A 83 MCGPHGLK------FLKPVELRLPHC--DPKTWQN 109 (146)
T ss_dssp EESSSSEE------EEEEEEEEECCC--CGGGGSC
T ss_pred EECCCCCc------CcCCEEEEcCcC--CCcCCEE
Confidence 47788875 567999999998 4555543
No 9
>1dee_G Immunoglobulin G binding protein A; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=4.31 E-value=1.7e+02 Score=23.71 Aligned_cols=12 Identities=58% Similarity=0.991 Sum_probs=9.6
Q ss_pred hhhhcCCCceEE
Q psy11460 758 LFEILNLPNLFV 769 (927)
Q Consensus 758 ~~~~~~~~~~~~ 769 (927)
.+||||+|||--
T Consensus 9 FYeil~lp~lte 20 (54)
T 1dee_G 9 FYEILNMPNLNE 20 (54)
T ss_dssp HHHHHHCSSSCH
T ss_pred HHHHHcCCCcch
Confidence 579999999853
No 10
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=4.04 E-value=2.3e+02 Score=21.41 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=9.4
Q ss_pred hhhhhcCCCceE
Q psy11460 757 SLFEILNLPNLF 768 (927)
Q Consensus 757 ~~~~~~~~~~~~ 768 (927)
..+|||++|||-
T Consensus 13 aFYevLh~~nLt 24 (38)
T 1zda_A 13 RFYEALHDPNLN 24 (38)
T ss_dssp HHHHHHSCSSSC
T ss_pred HHHHHHcCCCCC
Confidence 457899999874
Done!