Query psy11460
Match_columns 927
No_of_seqs 340 out of 975
Neff 5.7
Searched_HMMs 13730
Date Fri Aug 16 19:02:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11460.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11460hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fc2c_ a.8.1.1 (C:) Immunoglo 11.9 25 0.0019 25.3 0.3 23 758-780 9-33 (44)
2 d1lp1a_ a.8.1.1 (A:) Immunoglo 8.3 42 0.0031 25.0 0.4 23 758-780 10-34 (55)
3 d2e74e1 f.23.24.1 (E:1-32) Pet 6.8 3.2E+02 0.023 17.6 4.2 13 312-324 18-30 (32)
4 d1vcca_ d.121.1.1 (A:) Vaccini 6.4 87 0.0064 25.0 1.4 43 828-870 14-62 (77)
5 d1deeg_ a.8.1.1 (G:) Immunoglo 6.2 51 0.0037 24.3 -0.1 23 758-780 6-30 (51)
6 d1ha9a_ g.3.2.1 (A:) Trypsin i 5.8 74 0.0054 21.3 0.5 21 906-926 1-21 (34)
7 d1d0gr3 g.24.1.1 (R:102-128) D 5.3 1.3E+02 0.0096 19.0 1.4 14 629-643 4-17 (27)
8 d1bdsa_ g.9.1.1 (A:) BDs-I def 2.8 2.5E+02 0.018 19.2 1.3 31 170-202 3-43 (43)
9 d1q90l_ f.23.24.1 (L:) PetL su 2.7 7.1E+02 0.052 15.9 3.5 19 299-317 4-22 (32)
10 d1gff2_ b.121.5.1 (2:) Microvi 2.6 3.5E+02 0.025 24.5 2.5 30 846-875 37-66 (177)
No 1
>d1fc2c_ a.8.1.1 (C:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=11.91 E-value=25 Score=25.31 Aligned_cols=23 Identities=48% Similarity=0.759 Sum_probs=15.4
Q ss_pred hhhhcCCCceEEeee--hhhhhccc
Q psy11460 758 LFEILNLPNLFVVSR--YYDILKRD 780 (927)
Q Consensus 758 ~~~~~~~~~~~~~~~--~~~~~~~~ 780 (927)
..||++||||--.-| |..-||.|
T Consensus 9 f~Eil~lPNLne~Qrn~fI~SLkDD 33 (44)
T d1fc2c_ 9 FYEILHLPNLNEEQRNGFIQSLKDD 33 (44)
T ss_dssp HHHHHTCSSSCTHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCCHHHHHHHHHHhccC
Confidence 579999999965443 44455555
No 2
>d1lp1a_ a.8.1.1 (A:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=8.31 E-value=42 Score=25.03 Aligned_cols=23 Identities=35% Similarity=0.288 Sum_probs=15.9
Q ss_pred hhhhcCCCceEEeee--hhhhhccc
Q psy11460 758 LFEILNLPNLFVVSR--YYDILKRD 780 (927)
Q Consensus 758 ~~~~~~~~~~~~~~~--~~~~~~~~ 780 (927)
..||++||||--.-| |..-||.|
T Consensus 10 f~ei~~lPNLn~~Qrn~fIqSLkDD 34 (55)
T d1lp1a_ 10 GREIVTLPNLNDPQKKAFIFSLWDD 34 (55)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCCHHHHHHHHHHhccC
Confidence 579999999965443 45556655
No 3
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.82 E-value=3.2e+02 Score=17.61 Aligned_cols=13 Identities=31% Similarity=0.289 Sum_probs=6.2
Q ss_pred HHHHHHHhhhccc
Q psy11460 312 LIVVFVRAYKSLV 324 (927)
Q Consensus 312 liv~~~~~yk~~~ 324 (927)
++++.+.+.|+..
T Consensus 18 iavgiifaiksik 30 (32)
T d2e74e1 18 IAVGIIFAIKSIK 30 (32)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHhhheeeEEEEe
Confidence 3444455555543
No 4
>d1vcca_ d.121.1.1 (A:) Vaccinia DNA topoisomerase I, 9 kDa N-terminal fragment {Vaccinia virus, strain WR [TaxId: 10245]}
Probab=6.40 E-value=87 Score=25.02 Aligned_cols=43 Identities=26% Similarity=0.485 Sum_probs=34.4
Q ss_pred ccCCCCCCCCCCCccccceeeeeccccccceee------eeccEEEEEE
Q psy11460 828 EKNFTSFPDDSASPYRLFKRFTVPLSSTDVATT------TLNGFVFVVT 870 (927)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 870 (927)
.|++|..-.++..-|.+.|+..+|---|||..- .+||.+||-.
T Consensus 14 Dk~~t~~v~~~NptYeIl~~~kiP~hL~dV~vyeQt~Eea~~~LIfvG~ 62 (77)
T d1vcca_ 14 DNNFLNPVSDDNPAYEVLQHVKIPTHLTDVVVYEQTWEEALTRLIFVGS 62 (77)
T ss_dssp STTSCSBCCTTCTHHHHHHHCCCCTTCEEEEEECCCHHHHTTSEEEEEE
T ss_pred ccccceeCcccCchHHHHHhccCCcccceEEEeeeeHHHhhCceEEEee
Confidence 456666666777779999999999999999753 5789999864
No 5
>d1deeg_ a.8.1.1 (G:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=6.22 E-value=51 Score=24.35 Aligned_cols=23 Identities=48% Similarity=0.808 Sum_probs=15.8
Q ss_pred hhhhcCCCceEEeee--hhhhhccc
Q psy11460 758 LFEILNLPNLFVVSR--YYDILKRD 780 (927)
Q Consensus 758 ~~~~~~~~~~~~~~~--~~~~~~~~ 780 (927)
..|||+||||--.-| |..-||.|
T Consensus 6 fyeil~lpnl~eeQrn~fI~sLkdd 30 (51)
T d1deeg_ 6 FYEILNMPNLNEAQRNGFIQSLKDD 30 (51)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhhC
Confidence 579999999865443 55556655
No 6
>d1ha9a_ g.3.2.1 (A:) Trypsin inhibitor {Spiny bitter cucumber (Momordica cochinchinensis), MCOTI-II [TaxId: 3674]}
Probab=5.83 E-value=74 Score=21.30 Aligned_cols=21 Identities=43% Similarity=0.434 Sum_probs=17.9
Q ss_pred CCCcceeeeeeeeecccCCCC
Q psy11460 906 SGSSASIGYGILFQQGRDSDI 926 (927)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~ 926 (927)
|||+..+---||-|--||||-
T Consensus 1 sgs~~gvcpkilkkcrrdsdc 21 (34)
T d1ha9a_ 1 SGSDGGVCPKILKKCRRDSDC 21 (34)
T ss_dssp CCBTTBCCCCCCCBCSSGGGS
T ss_pred CCcccccCHHHHHHhccccCC
Confidence 678888888899999999983
No 7
>d1d0gr3 g.24.1.1 (R:102-128) Death receptor-5 (dr5) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.25 E-value=1.3e+02 Score=19.04 Aligned_cols=14 Identities=36% Similarity=1.099 Sum_probs=11.6
Q ss_pred CCCCccceeeccccC
Q psy11460 629 TKCPPKGLQNISPCQ 643 (927)
Q Consensus 629 ~~Clp~GlldlS~C~ 643 (927)
++| |.|++.++.|.
T Consensus 4 tgc-prg~vkv~dct 17 (27)
T d1d0gr3 4 TGC-PRGMVKVGDCT 17 (27)
T ss_dssp SSC-CTTCEEEECCB
T ss_pred cCC-CCcceEeccCc
Confidence 357 69999999996
No 8
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=2.79 E-value=2.5e+02 Score=19.19 Aligned_cols=31 Identities=35% Similarity=0.949 Sum_probs=18.0
Q ss_pred CCCCCCC----------CCCCCCceeeCCCCCCCCceeecccc
Q psy11460 170 KCYCPGQ----------TKCPPKGLQNISPCQFDAPVFLSFPH 202 (927)
Q Consensus 170 ~CfC~~~----------~~C~p~GlldlS~C~~GaPi~~S~PH 202 (927)
.|||... +.| |-|---.|.|+ .-|-+--.||
T Consensus 3 pcfcsgkpgrgdlwilrgtc-pggygytsncy-kwpniccyph 43 (43)
T d1bdsa_ 3 PCFCSGKPGRGDLWILRGTC-PGGYGYTSNCY-KWPNICCYPH 43 (43)
T ss_dssp CCCCSSCCSCCEEECSCSSC-CTTTCCCCEEE-ETTEEEECCC
T ss_pred cccccCCCCCCcEEEEeccc-CCCcccccccc-cCCcccccCC
Confidence 5898652 235 34444455664 5677777776
No 9
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.72 E-value=7.1e+02 Score=15.94 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11460 299 ILEYGFIIFGSLVLIVVFV 317 (927)
Q Consensus 299 ~l~~~li~lGlilliv~~~ 317 (927)
+..|+.+.+|.+.+.++++
T Consensus 4 i~syvglligal~~tlgiy 22 (32)
T d1q90l_ 4 ITSYVGLLIGALVFTLGIY 22 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4456666666655555543
No 10
>d1gff2_ b.121.5.1 (2:) Microvirus capsid proteins {Bacteriophage G4 [TaxId: 10843]}
Probab=2.63 E-value=3.5e+02 Score=24.55 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=25.4
Q ss_pred eeeeeccccccceeeeeccEEEEEEeCCCC
Q psy11460 846 KRFTVPLSSTDVATTTLNGFVFVVTMTPDN 875 (927)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (927)
-|=|+-+-++-.|.++-.||.||+-|.+.|
T Consensus 37 ~rst~~~~~~~~aat~~~Gf~~v~~~d~t~ 66 (177)
T d1gff2_ 37 SRSTILINATTTAVTTHSGLCHVVRIDETN 66 (177)
T ss_dssp SEEEECCEEEECCEESSCEEEEEEECCCCC
T ss_pred ceeEEEEEeeeeeeecCCceEEEEEecCCC
Confidence 577777888888888999999999998654
Done!