RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11460
(927 letters)
>gnl|CDD|216316 pfam01130, CD36, CD36 family. The CD36 family is thought to be a
novel class of scavenger receptors. There is also
evidence suggesting a possible role in signal
transduction. CD36 is involved in cell adhesion.
Length = 460
Score = 281 bits (722), Expect = 1e-85
Identities = 123/386 (31%), Positives = 183/386 (47%), Gaps = 73/386 (18%)
Query: 7 ELGPLLSREDMQKVNIEFHDNG-TVTFQHYKILEFVPELSVAPN-NTRFILPNIPLL--- 61
E+GP + RE +KVN+ F+DNG TV+++ + F PELSV + +PNIP+L
Sbjct: 77 EVGPYVYREYREKVNVTFNDNGTTVSYKQRRTYVFDPELSVGGPEDDVITVPNIPMLGAA 136
Query: 62 --------------------------RNGTISEV-------------QTIYTGHGGMENF 82
T+ E+ + + + F
Sbjct: 137 ATAKSMSPLLRLLINAALKSLGEKPFVTRTVGELLFGYEDPLLSLAKKPPFNPDLPFDKF 196
Query: 83 GYMDKLNGLD--------------------------HLPYWDEAPCNAIKASEGSFFPPR 116
G NG HL +W CN I ++GS FPP
Sbjct: 197 GLFYGRNGTYDGVFTVNTGVDDISKLGQIDSWNGETHLGWWPTDECNMINGTDGSLFPP- 255
Query: 117 DLTKSDLVHVYDKDLCRIWPLRYRRDVEKDGLKAGYYTPDDEIFSPGESQPENKCYCPGQ 176
LTK D ++V+ DLCR PL Y+ V +G+ Y ++F G + PEN+C+C
Sbjct: 256 FLTKKDTLYVFSPDLCRSIPLVYQETVTYNGIPGYRYVGPPDVFDNGTNNPENECFCVKN 315
Query: 177 TKCPPKGLQNISPCQFDAPVFLSFPHFYKADPELLDAVEGLTPNQEKHETFFKIQPKLGV 236
C P GL ++S C + AP+FLSFPHFY ADP LL+AVEGL PN+EKHETF I+P G
Sbjct: 316 QDCLPSGLLDVSKCYYGAPIFLSFPHFYGADPSLLEAVEGLNPNKEKHETFIDIEPTTGT 375
Query: 237 PLEAAVRVQLNLAVEE-SNIHVVRGFRSITFPIMWVEEGIGDLPPNIHRWIYLATSFAPN 295
PL+AA R+Q+N+ VE+ I +++ F ++ P+ W EEG L + + P
Sbjct: 376 PLQAAKRLQINILVEKVKGISILKNFPNVILPLFWFEEGA-VLDDELASLLKKQLVILPR 434
Query: 296 IAPILEYGFIIFGSLVLIVVFVRAYK 321
I L + + G ++L++ + ++
Sbjct: 435 IQSYLGWVLLALGLILLLIAIILYFR 460
Score = 190 bits (484), Expect = 2e-52
Identities = 77/199 (38%), Positives = 109/199 (54%), Gaps = 1/199 (0%)
Query: 446 TLTSQANALKPLMKTGVSLALRMTSMKPFVSITAEELVFGYDDTLTSLANRFFPKGKRPP 505
+ A ++ PL++ ++ AL+ KPFV+ T EL+FGY+D L SLA + P
Sbjct: 134 GAAATAKSMSPLLRLLINAALKSLGEKPFVTRTVGELLFGYEDPLLSLAKKPPFNPDLPF 193
Query: 506 RKMGLFLGRNGTISEVQTIYTGHGGMENFGYMDKLNGLDHLPYWDEAPCNAIKASEGSFF 565
K GLF GRNGT V T+ TG + G +D NG HL +W CN I ++GS F
Sbjct: 194 DKFGLFYGRNGTYDGVFTVNTGVDDISKLGQIDSWNGETHLGWWPTDECNMINGTDGSLF 253
Query: 566 PPRDLTKSDLVHVYDKDLCRIWPLRYRRDVEKDGLKAGYYTPDDEIFSPGESQPENKCYC 625
PP LTK D ++V+ DLCR PL Y+ V +G+ Y ++F G + PEN+C+C
Sbjct: 254 PP-FLTKKDTLYVFSPDLCRSIPLVYQETVTYNGIPGYRYVGPPDVFDNGTNNPENECFC 312
Query: 626 PGQTKCPPKGLQNISPCQF 644
C P GL ++S C +
Sbjct: 313 VKNQDCLPSGLLDVSKCYY 331
Score = 120 bits (304), Expect = 8e-29
Identities = 46/85 (54%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Query: 365 NAPVFLSFPHFYKADPELLDAVEGLTPNQEKHETFFKIQPKLGVPLEAAVRVQLNLAVEE 424
AP+FLSFPHFY ADP LL+AVEGL PN+EKHETF I+P G PL+AA R+Q+N+ VE+
Sbjct: 332 GAPIFLSFPHFYGADPSLLEAVEGLNPNKEKHETFIDIEPTTGTPLQAAKRLQINILVEK 391
Query: 425 -SNIHVVRGFRSITFPIMWVEETLT 448
I +++ F ++ P+ W EE
Sbjct: 392 VKGISILKNFPNVILPLFWFEEGAV 416
>gnl|CDD|217064 pfam02487, CLN3, CLN3 protein. This is a family of proteins from
the CLN3 gene. A missense mutation of glutamic acid (E)
to lysine (K) at position 295 in the human protein has
been implicated in Juvenile neuronal ceroid
lipofuscinosis (Batten disease).
Length = 409
Score = 34.8 bits (80), Expect = 0.19
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 733 AALLCSYNYIGLSFLESARGKEFVSLFEILNLPNLFVVSRYYDILKRDRVL------PSS 786
A L+ +++Y L+ + A +L +L +P LF S ++ + + V PS+
Sbjct: 150 AGLIGAFSYAFLT--QIAGLSPKHTLLVMLFIPALFAFSYFFLLTSPETVYTSPTLQPST 207
Query: 787 WLDKGLDASWKTHVTYYDDSQTTPDVDRNITPLQRVRIIRR 827
W ++ T D+SQ+ P R + PL+R++ I
Sbjct: 208 WAVPKQYDPFEVAETRGDNSQSVP--SRRLGPLERLKRILP 246
>gnl|CDD|225543 COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and
HTH domains) [General function prediction only].
Length = 287
Score = 31.1 bits (71), Expect = 2.3
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 82 FGYMDKLNGLDHLPYWDEAPCNAIKA----SEGSF 112
Y++ G +P+ D++ IKA S+G F
Sbjct: 231 LTYLESNGG--FMPFNDKSSPEDIKATFGISKGQF 263
Score = 31.1 bits (71), Expect = 2.3
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 534 FGYMDKLNGLDHLPYWDEAPCNAIKA----SEGSF 564
Y++ G +P+ D++ IKA S+G F
Sbjct: 231 LTYLESNGG--FMPFNDKSSPEDIKATFGISKGQF 263
>gnl|CDD|118103 pfam09567, RE_MamI, MamI restriction endonuclease. This family
includes the MamI (recognises and cleaves GATNN^NNATC)
restriction endonuclease.
Length = 350
Score = 30.6 bits (68), Expect = 3.8
Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 26/140 (18%)
Query: 760 EILNLPNLF--VVSRYYDILKRDRVLPSSW-LDKGLDASWKTHVTYYDDSQTTPDVDRNI 816
E+L +P F ++ ++D+ + +W +D D + + + +
Sbjct: 145 EVLGVPKHFYLLLDDFHDLRDPAPIRARAWCIDALEDGDARCLFDTFKNIKLAS------ 198
Query: 817 TPLQRVRIIRREKNFTSFPDDSASPYRLFKRFTVPLS-STDVATTTLNGFVFVVTMTPDN 875
+R F +P ++L PL DV TL F + D
Sbjct: 199 ---------KRGAPFNLWP------FQLKFELHPPLGYDDDVVVNTLGNLDFQNFILFDA 243
Query: 876 TLEMTVKVKPDVP-HILIPT 894
+++ ++ H+ +PT
Sbjct: 244 RIQLADFDGHEIAEHVPLPT 263
>gnl|CDD|235428 PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine
aminotransferase; Provisional.
Length = 360
Score = 30.1 bits (69), Expect = 5.6
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 14/50 (28%)
Query: 732 QAALLCSYNYIGLSFLE-SARGKEFVSLF--------EILNLPN----LF 768
Q LL +N G+S +E S R KEF ++ E+LN+P+ LF
Sbjct: 23 QQELLD-WNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLF 71
>gnl|CDD|212104 cd10792, GH57N_AmyC_like, N-terminal catalytic domain of
alpha-amylase ( AmyC ) and similar proteins.
Alpha-amylases (alpha-1,4-glucan-4-glucanohydrolases, EC
3.2.1.1) play essential roles in alpha-glucan metabolism
by catalyzing the hydrolysis of polysaccharides such as
amylose starch, and beta-limit dextrin. This subfamily
is represented by a novel alpha-amylase (AmyC) encoded
by hyperthermophilic organism Thermotoga maritime ORF
tm1438, and its prokaryotic homologs. AmyC functions as
a homotetramer and shows thermostable amylolytic
activity. It is strongly inhibited by acarbose. AmyC is
composed of a N-terminal catalytic domain, containing a
distorted TIM-barrel structure with a characteristic
(beta/alpha)7 fold motif, and two additional less
conserved domains. There are other two canonical
alpha-amylases encoded from T. maritime that lack the
sequence similarity to AmyC, and belong to a different
superfamily.
Length = 412
Score = 30.2 bits (69), Expect = 5.8
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 20/94 (21%)
Query: 704 RQHQIDETPNIMNAFPTLIGSVFLVSPFQAALLCSYNYIGLSFLESARGKEFVSLFEILN 763
R+ Q+++ +M+ P L+ V+P+ A L + + G FLE+ +F
Sbjct: 326 REKQLEKLAALMD-RPPLV-----VAPYDAELFGHWWFEGPDFLEA--------VFRKAA 371
Query: 764 LPNLFVVSRYYDILKRDRVL------PSSWLDKG 791
+ + LK L SSW + G
Sbjct: 372 EDQDIELITPSEYLKEHPDLQVAEPSFSSWGEGG 405
>gnl|CDD|236778 PRK10859, PRK10859, membrane-bound lytic transglycosylase F;
Provisional.
Length = 482
Score = 30.2 bits (69), Expect = 6.2
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 13/52 (25%)
Query: 487 DDTLTSLANRFFPKGKRPPRKMGLFLGRNGTISEVQTIYTGHGGMENFGYMD 538
DD+L + FF + K +GT++ ++ Y GH F Y+D
Sbjct: 237 DDSLYAALLDFFNQIK-----------EDGTLARLEEKYFGHVD--RFDYVD 275
>gnl|CDD|215309 PLN02571, PLN02571, triacylglycerol lipase.
Length = 413
Score = 29.9 bits (67), Expect = 7.2
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 663 VVSRYYDILKRDRVVPSSWL---DKGL----DASWKTHSHEGDNL 700
+V++ D LK + +VP SW +KG+ D SWK HE D+
Sbjct: 366 LVNKSVDGLKDEYLVPGSWRVQKNKGMVQQADGSWKLMDHEEDDN 410
>gnl|CDD|182875 PRK10973, PRK10973, glycerol-3-phosphate transporter membrane
protein; Provisional.
Length = 281
Score = 29.7 bits (67), Expect = 7.7
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 14/48 (29%)
Query: 831 FTSFPD--------DSASPYRLFKRFTVPLSSTDVATTTLNGFVFVVT 870
F + PD D ASP R F +PLS T++A +FV+T
Sbjct: 166 FMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAA------LFVIT 207
>gnl|CDD|197547 smart00156, PP2Ac, Protein phosphatase 2A homologues, catalytic
domain. Large family of serine/threonine phosphatases,
that includes PP1, PP2A and PP2B (calcineurin) family
members.
Length = 271
Score = 29.1 bits (66), Expect = 9.0
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 10/49 (20%)
Query: 470 SMKPFVSITAEELVFG-----YDDTLTSLANRFFPKGKRPPRKMGLFLG 513
V ++A V G +DD L R F K +PP +FLG
Sbjct: 19 QEPNLVEVSAPVTVCGDIHGQFDDLL-----RLFDKNGQPPETNYVFLG 62
>gnl|CDD|227462 COG5133, COG5133, Uncharacterized conserved protein [Function
unknown].
Length = 181
Score = 28.8 bits (64), Expect = 9.7
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 851 PLSSTDVATTTLNGFVFVVTMTPDNTLEMTVKVKPDVPHILIPTL--LYLRVKLS 903
PL+ ++ +L + P+ + V + P +PH + TL L +RV+L
Sbjct: 72 PLTLEQLSVVSLEDISVPDGIAPNVIRCVKVVITPTIPHCSMATLIGLCIRVRLE 126
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.425
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 48,630,082
Number of extensions: 4906565
Number of successful extensions: 3714
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3704
Number of HSP's successfully gapped: 21
Length of query: 927
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 821
Effective length of database: 6,236,078
Effective search space: 5119820038
Effective search space used: 5119820038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.3 bits)