RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11460
(927 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 76.4 bits (187), Expect = 3e-14
Identities = 90/657 (13%), Positives = 187/657 (28%), Gaps = 194/657 (29%)
Query: 195 PVFLSFPHFYKAD---PELLDAVEGLTPNQEKHETFFKIQPKLGVPLEAAVRVQLNLAVE 251
VF F + ++ D + + +E + +R+ L +
Sbjct: 23 SVFE--DAF-VDNFDCKDVQDMPKSILSKEEIDHII-----MSKDAVSGTLRLFWTLLSK 74
Query: 252 ESNIHVVRGFRSITFPIMWVEEGIGDLPPNIHRWIYLATSFAPNIAPILEYGFIIFGSLV 311
+ + V+ F VEE L N ++++ P +
Sbjct: 75 QEEM--VQKF---------VEEV---LRIN-YKFLMSPIKTEQR-QPSMMT--------- 109
Query: 312 LIVVFVRAYKSL-----VFTQENLERGRE---------KLRRGSSFIVNGQHRLM----- 352
+++ L VF + N+ R + +LR + +++G +
Sbjct: 110 --RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG----VLGSGK 163
Query: 353 ------IIRDSYSLLGNHNAPVF-LSFPHFYKADPELLDAVEGLTPNQEKHETFFKIQPK 405
+ Y + + +F L+ + + +L+ ++ L ++I P
Sbjct: 164 TWVALDVCLS-YKVQCKMDFKIFWLNLKN-CNSPETVLEMLQKL---------LYQIDPN 212
Query: 406 LGVPLEAAVRVQLNLAVEESNIHVVRGFRSITFP----IM---WVEETLTSQANAL---- 454
+ + ++L + + R +S + ++ + NA
Sbjct: 213 WTSRSDHSSNIKLRI--HSIQAELRRLLKSKPYENCLLVLLNVQNAKAW----NAFNLSC 266
Query: 455 KPLMKT---GVSLALRMTSMKPFVSITAEELVFGYDDTLTSLANRFFPKGKRPPRKMGLF 511
K L+ T V+ L + +S+ + D+ + L + + PR
Sbjct: 267 KILLTTRFKQVTDFLSAATTTH-ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR----- 320
Query: 512 LGRNGTISEVQTIYTGHGGMENFGYMDKLNGLDHLPYWDEAPCNAI-KASEGSF--FPPR 568
EV T + + +GL W C+ + E S P
Sbjct: 321 --------EVLTTNPRRLSI--IAESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 569 DLTK--SDLVHVYDKD-------LCRIWP-------------LRYRRDVEKDGLKAGYYT 606
+ K L V+ L IW L VEK ++
Sbjct: 370 EYRKMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 607 PD--DEIFSPGESQPE-----------NKCYCPGQTKCPPKGLQNISPCQFA-NLLQSNL 652
P E+ E++ K + P L +L
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD--DLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 653 SNSLNL-PNLFVVSRYYDILKRDRVVPSSWLDKGL---DASWKTHSHEGDNLGHLR---Q 705
+ L +F+ D +L++ + +W + L L+
Sbjct: 487 PERMTLFRMVFL-----DF---------RFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 706 HQIDETP-------NIMNAFPTLIGSVFLVSPF----QAALLCSYNYIGLSFLESAR 751
+ D P I++ F I + S + + AL+ I F E+ +
Sbjct: 533 YICDNDPKYERLVNAILD-FLPKIEENLICSKYTDLLRIALMAEDEAI---FEEAHK 585
Score = 55.2 bits (132), Expect = 1e-07
Identities = 78/663 (11%), Positives = 167/663 (25%), Gaps = 194/663 (29%)
Query: 117 DLTKSDLVHVYDKDLCRIWPLRYRRDVEKDGLKAGYYTPDDEIFSPGESQPENKCY---- 172
D++ V++ + + +D+ K L D I +
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI---DHII--MSKDAVSGTLRLFW 69
Query: 173 --CPGQTKCPPKGLQNISPCQFDAPVFLSFPHFYKADPELLDA--VEGLTPNQEKHETFF 228
Q + K ++ + + + +S + P ++ +E ++ F
Sbjct: 70 TLLSKQEEMVQKFVEEV--LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF- 126
Query: 229 KIQPKLGVPLEAAVRVQLNLAVEE----SNIHVVRGFRSITFPIMWVEEGIG-------- 276
K V +L A+ E N+ ++ G + G G
Sbjct: 127 ---AKYNVSRLQPYL-KLRQALLELRPAKNV-LIDG--------V---LGSGKTWVALDV 170
Query: 277 --------DLPPNIHRWIYLATSFAPNIAPILEYGFIIFGSLVLIVVFVRAYKSLVFTQE 328
+ I W+ L +P +LE L+ + S
Sbjct: 171 CLSYKVQCKMDFKIF-WLNLKNCNSPET--VLEM------LQKLLYQIDPNWTSRSDHSS 221
Query: 329 N----LERGREKLRRGSSFIVNGQHR--LMIIRDSYS-------------LLGNHNAPVF 369
N + + +LRR + + + L+++ + + LL V
Sbjct: 222 NIKLRIHSIQAELRR---LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 370 LSFPHFYKADPELLDAVEGLTPNQEKHETFFKIQPKLGVPLEAAVRVQLNLAVEESNIH- 428
L LTP++ K K L + +L E +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVK-SLLLKY---LDCRPQ-------DLPREVLTTNP 327
Query: 429 -----VVRGFRSITFPIMWVEETLTSQANALKPLMKTGVSLALRMTSMKP-------F-- 474
+ R W + + L ++++ ++ L + F
Sbjct: 328 RRLSIIAESIRD--GLATW-DNWKHVNCDKLTTIIESSLN-VLEPAEYRKMFDRLSVFPP 383
Query: 475 -VSITAE--ELVFGYDDT------LTSLANRFFPKGKRPPRK---MGLFLGRNGTISEVQ 522
I L++ + L + + ++L +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 523 TIYTGHGGMENFGYMDKLNGLDHLPYWDEAPCNAIKASEGSFFP--PRDLTKSDLVHVYD 580
+ H + +D N D P + F+ L +
Sbjct: 444 AL---HRSI-----VDHYNIPKTFDSDDLIP----PYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 581 KDLCRIWPLRYR---RDVEKDGLKAG-----------------YYTPDDEI--------- 611
L R+ L +R + + D Y +D
Sbjct: 492 --LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 612 -FSPGESQPENKCYCPGQTKCPPKGLQNISPCQFANLLQSNLSNSLNLPNLFVVSRYYDI 670
F P + E C ++ +LL+ L + + +
Sbjct: 550 DFLP---KIEENLIC----------------SKYTDLLRIALMA----EDEAIFEEAHKQ 586
Query: 671 LKR 673
++R
Sbjct: 587 VQR 589
Score = 45.6 bits (107), Expect = 8e-05
Identities = 49/336 (14%), Positives = 96/336 (28%), Gaps = 90/336 (26%)
Query: 560 SEGSFFPPRDLTKSDLVHVYDKDLCRIWPLRYRRDVEKDGLK-AG--------------Y 604
++ F ++++ + L LR ++V DG+ +G
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLE---LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 605 YTPDDEIF--SPGESQPENKCYCPGQTKCPPKGLQNISPCQFANLLQSNLSNSLNLP-NL 661
D +IF + C P + LQ + Q S +S N+ +
Sbjct: 178 CKMDFKIFWLNLK------NCNSPETV---LEMLQKLLY-QIDPNWTSRSDHSSNIKLRI 227
Query: 662 FVVSRYYDILKRDRVVPSSWLDKGLDASWKTHSHEGDNLGHLRQHQIDETPNIMNAF--- 718
+ L + + + L L NAF
Sbjct: 228 HSIQAELRRLLKSKPYENCLLV--LLNVQ--------------------NAKAWNAFNLS 265
Query: 719 -PTLI----GSVFLVSPFQAALLCSYNYIGLSFLESARGKEFVSLF-EILN-----LP-- 765
L+ V S ++ ++ E SL + L+ LP
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD----EVKSLLLKYLDCRPQDLPRE 321
Query: 766 ----NLFVVSRYYDILKRDRVLPSSWLDKGLDASWKTHVTYYDDSQTTPDVDRNITPLQR 821
N +S I + R ++W +WK + + + T ++ ++ L+
Sbjct: 322 VLTTNPRRLSI---IAESIRDGLATW------DNWK----HVNCDKLTTIIESSLNVLEP 368
Query: 822 VRIIRREKNFTSFPDDSASPYRLFKRFTVPLSSTDV 857
+ + FP + P L + +DV
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Score = 44.8 bits (105), Expect = 1e-04
Identities = 51/336 (15%), Positives = 91/336 (27%), Gaps = 104/336 (30%)
Query: 12 LSREDMQKVNIEFHDNGTVTFQHYKILE-FVPELSVAPNNTRFILPNIPLLRNGTISEVQ 70
LS ++++ H ++ + L P + LP EV
Sbjct: 281 LSAATTTHISLDHHSMT---LTPDEVKSLLLKYLDCRPQD----LP----------REVL 323
Query: 71 TIYTGHGGMENFGYMDKLNGLDHLPYWDEAPCNAI-KASEGSF--FPPRDLTK--SDLVH 125
T + + +GL W C+ + E S P + K L
Sbjct: 324 TTNPRRLSI--IAESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS- 379
Query: 126 VYDKD-------LCRIWP-------------LRYRRDVEKDGLKAGYYTPDDEIFSPGES 165
V+ L IW L VEK ++ P I+ +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS--IYLELKV 437
Query: 166 QPENK---------CYCPGQTKCPPKGLQNISPCQFDAPVF--LSFPHFYKADPELLDAV 214
+ EN+ Y +T ++ P D + + H +
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDS----DDLIPPYLDQYFYSHIGH-HLKNIEHP----- 487
Query: 215 EGLTPNQEKHETF------FK-IQPKL---GVPLEAAVRVQLNLAVEESNIHVVRGFRSI 264
E+ F F+ ++ K+ A+ + LN + ++ ++
Sbjct: 488 -------ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI-LNT------LQQLKFYKPY 533
Query: 265 TFPIMWVEEGIGDLPPNIHRWIYLATSFAPNIAPIL 300
I D P R + F P I L
Sbjct: 534 ----------ICDNDPKYERLVNAILDFLPKIEENL 559
Score = 40.2 bits (93), Expect = 0.004
Identities = 56/413 (13%), Positives = 104/413 (25%), Gaps = 125/413 (30%)
Query: 569 DLTKSDLVHVYDKDLCRIWPLRYRRDVEKDGLKAG-----YYTPDDE-----IFSPGESQ 618
D++ V++ + + +D+ K L + D +F S+
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 619 PEN-----------KCY----CPGQTKCPPKGLQNISPCQFANLLQSNLSNSLNLPNLFV 663
E Y P +T+ P + N +F
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQ-------RQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 664 ---VSRYYDI------LKRDRVVPS-----------SWLDKGLDASWKTHSHEGD----- 698
VSR L R + +W+ + S+K
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 699 NLGHLRQHQIDETPNIMNAFPTLIGSVFLVSPFQAALLCSYNYIGLSFLESARGKEFVSL 758
NL + + ++ I + S N + S + +
Sbjct: 188 NLK--NCNSPETVLEMLQKLLYQIDPNWTSRSDH-----SSNIK--LRIHSIQAE----- 233
Query: 759 FEILNLPNLFVVSRY---YDILKRDRVLPSSWLDKGLDASWKTHVTYYDDSQTTPDVDRN 815
L L Y +L V ++ + S K +T T +
Sbjct: 234 -----LRRLLKSKPYENCLLVL--LNVQ-NAKAWNAFNLSCKILLTTRFKQVTD-FLSAA 284
Query: 816 ITPLQRVRIIRREKNFTSFPDDSASPYRLFKRFTVPLSSTDVATTTLNGFVFVVTM---- 871
T + + T PD+ S L ++ + D+ L +++
Sbjct: 285 TT--THISLDHHSMTLT--PDEVKS---LLLKY-LDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 872 ------TPDN-----------TLEMTVKV-KPDV------------PHILIPT 894
T DN +E ++ V +P P IPT
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 7e-10
Identities = 77/529 (14%), Positives = 140/529 (26%), Gaps = 204/529 (38%)
Query: 153 YTPDDEIFSPGE-------------SQPENKCYC-------------------------- 173
+ DDE +P E + +
Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 174 -PGQTKCPPKGLQNISPCQFDAPVFLSFPHFYKADPELLDAVE-------------GLTP 219
+ + + A + P K++ L AV G T
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 220 N-----QEKHETFFKIQPKLGVPLEAAVRVQLNLA--VEESNIHVVRGFRSITFPIM-WV 271
+ ++ ++T+ +G ++ + L ++ +G I+ W+
Sbjct: 168 DYFEELRDLYQTY---HVLVGDLIKFSAETLSELIRTTLDAEKVFTQG-----LNILEWL 219
Query: 272 EEGIGDLPPNIHRWIYLATSFAPNIAPILEYGFIIFGSLVLIVV-----FVRAYKSLVFT 326
E + P YL + PI S LI V +V K L FT
Sbjct: 220 ENP-SNTPDK----DYLLS------IPI---------SCPLIGVIQLAHYVVTAKLLGFT 259
Query: 327 QENLERGREKLRRGSSFIVNGQHRLMIIRDSYSLLGNHNAPVFL----SFPHFYKADPEL 382
L R L +G++ G ++ V + S+ F+ + +
Sbjct: 260 PGEL---RSYL-KGATGHSQG-----LV-----------TAVAIAETDSWESFFVS---V 296
Query: 383 LDAVE-----GLTPNQEKHETFFKIQPKLGVPLEAAVRVQLNLAVEE---SNIHVVRGFR 434
A+ G+ +E + P +P ++ +L E S + +
Sbjct: 297 RKAITVLFFIGV----RCYEAY----PNTSLPPSI---LEDSLENNEGVPSPMLSISNLT 345
Query: 435 SITFPIMWVEETLTSQANALKPLMKTGVSLALRMTSMKPFVSITAEELVFGYDDTLTSLA 494
V++ + + N+ P K V ++L K V V G +L L
Sbjct: 346 QEQ-----VQDYVN-KTNSHLPAGKQ-VEISLV-NGAKNLV-------VSGPPQSLYGLN 390
Query: 495 NRF-------------FPKGKRPPRKMGLFLGRNGTISEVQTIYTGHGGMENFGYMDKLN 541
P +R + FL ++ F
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFL----PVASP------------F------- 427
Query: 542 GLDHLPYWDEAPCNAIK--ASEGSFFPPRDLTKSDLVHVYD----KDLC 584
H A K F +D+ + VYD DL
Sbjct: 428 ---HSHLLVPASDLINKDLVKNNVSFNAKDIQ----IPVYDTFDGSDLR 469
Score = 55.1 bits (132), Expect = 1e-07
Identities = 99/620 (15%), Positives = 177/620 (28%), Gaps = 232/620 (37%)
Query: 397 ETFFKIQPKLGVPLEAAVRVQLNLAVEE---SNIHVVRGFRSITFPIMWVEETLTSQANA 453
E F KI P+ P E A ++ + +V F + + VE S+
Sbjct: 35 EQFNKILPE---PTE-------GFAADDEPTTPAELVGKF--LGYVSSLVEP---SKVGQ 79
Query: 454 LKPLMKTGV--------------SLALRMTSMKPFVSITAEELVFGYDDTLTSLANRFFP 499
++ + +LA ++ + +EL+ Y +A R F
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR-IMAKRPFD 138
Query: 500 KGKRPPRKMGLFLGRNGTISEVQTIYTGHGGMENFGYMDKLNGLDHLPYWDEAPCNAIKA 559
K LF + GG G N D Y++E
Sbjct: 139 KKSNSA----LF---RAVGEGNAQLVAIFGG---QG-----NTDD---YFEEL------- 173
Query: 560 SEGSFFPPRDLTKS------DLVHVYDKDLCRIWPLRYRRDVEK---DG------LKAGY 604
RDL ++ DL+ + L + +R D EK G L+
Sbjct: 174 --------RDLYQTYHVLVGDLIKFSAETLSEL--IRTTLDAEKVFTQGLNILEWLENPS 223
Query: 605 YTPDDEIFSPGESQPENKCYCPGQTKCPPKGL-Q-----------NISPCQFANLLQSNL 652
TPD + P CP G+ Q +P + + L+
Sbjct: 224 NTPDKDYL----------LSIP--ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 653 SNSLNLPNLFVVSRYYDILKRDRVVPSSW------LDKGLDAS-WKTHSHEGDNLGHLRQ 705
+S L ++ SW + K + + +G +R
Sbjct: 272 GHSQGLVTAVAIA-----------ETDSWESFFVSVRKAITVLFF---------IG-VRC 310
Query: 706 HQIDETPNIMNAFPTLIGSVFLV-----------SPFQAALLCSYNYIGLS--FLES--- 749
++ A+P ++ SP L S L+ ++
Sbjct: 311 YE---------AYPNTSLPPSILEDSLENNEGVPSP---MLSIS----NLTQEQVQDYVN 354
Query: 750 -------ARGKEFVSLFEILNLPNLFVVSRYYDILKRDRVLPSSWLDKGLDASWKTHVTY 802
A + +SL N VVS P S L GL
Sbjct: 355 KTNSHLPAGKQVEISLV---NGAKNLVVSGP----------PQS-L-YGL-------NLT 392
Query: 803 YDDSQTTPDVDRNITPL-QR-VRIIRREKNFTSFPDDSA---SPYRLFKRFTVPLSSTDV 857
++ +D++ P +R ++ R F ++ S L L + D+
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNR------FLPVASPFHSHL-LVP--ASDLINKDL 443
Query: 858 ATTTLNGFVFVVTMTPDNTLEMTV----------KVKPDVPHILIPTLLYLRVKLSSASG 907
N F +++ V + + ++ ++ L VK + +
Sbjct: 444 VK---NNVSF-----NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 908 SSAS-IGYGILFQQGRDSDI 926
A+ I + F G S +
Sbjct: 496 FKATHI---LDFGPGGASGL 512
Score = 48.9 bits (116), Expect = 9e-06
Identities = 64/329 (19%), Positives = 97/329 (29%), Gaps = 123/329 (37%)
Query: 23 EFHDNG----TVTFQH-YKILEFVPELSVAPNNTRFILPNI-----PLL--RNGTISEVQ 70
F + TV F + E P S+ P+ L N P+L N T +VQ
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 71 TIYTGHGGMENFGYMDKLNGLDHLPYWDE-------APCNAIKASEGSFFPPRDLTKSDL 123
Y++K N HLP + N + + G PP+ L
Sbjct: 351 D------------YVNKTNS--HLPAGKQVEISLVNGAKNLVVS--G---PPQSLYG--- 388
Query: 124 VHVYDKDLCRIWPLRYRRDVEKDGLKAGYYTPDDEIFSPGESQPENKCYCPGQTKCP--- 180
L L R+ KA G Q ++ P
Sbjct: 389 -------LN----LTLRK------AKA----------PSGLDQ----------SRIPFSE 411
Query: 181 --PKGLQNISPCQFDAPVFLSFPHFYKADPELLDAVEGLTPNQEKHETFFKIQPKLGVPL 238
K N +F PV F H L+ A + + + K+ F + +P+
Sbjct: 412 RKLKF-SN----RFL-PVASPF-H----SHLLVPASDLINKDLVKNNVSFN-AKDIQIPV 459
Query: 239 EAAVRVQLNLAVEESNIHVVRGFRSIT-FPIMWVE-----------------EGIGDLPP 280
+L V +I R I P+ W G+G L
Sbjct: 460 YD-TFDGSDLRVLSGSI-SERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL-- 515
Query: 281 NIHR-----WIYLATSFAPNIAPILEYGF 304
HR + + + +I P +YGF
Sbjct: 516 -THRNKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 48.9 bits (116), Expect = 9e-06
Identities = 104/677 (15%), Positives = 177/677 (26%), Gaps = 259/677 (38%)
Query: 225 ETFFKIQPKLGVPLEAAVRVQLNLAVEE---SNIHVVRGFRSITFPIMWVEEG-IGDLPP 280
E F KI P+ P E A ++ + +V F + + VE +G
Sbjct: 35 EQFNKILPE---PTE-------GFAADDEPTTPAELVGKF--LGYVSSLVEPSKVGQFDQ 82
Query: 281 -----------------NIHRWIYLATSFAPNIAPILEYGFIIFGSLVLIVVFVRAY-KS 322
+IH + A + + +LV ++ Y +
Sbjct: 83 VLNLCLTEFENCYLEGNDIH-------ALAAKLLQEND------TTLVKTKELIKNYITA 129
Query: 323 LVFTQENLERGRE-KLRRGSSFIVNGQHRLMIIRDSYSLL---GNHNAPVFLSFPHFYKA 378
+ + ++ L R G +L ++ GN +
Sbjct: 130 RIMAKRPFDKKSNSALFRAVG---EGNAQL------VAIFGGQGNTDDYF---------- 170
Query: 379 DPELLDAVEGLTPNQEKHETFFKIQPKLGVPLEAAVRVQLNLA--VEESNIHVVRGFRSI 436
EL ++ ++T+ +G ++ + L ++ +G
Sbjct: 171 -EEL----------RDLYQTY---HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL--- 213
Query: 437 TFPIM-WVEETLTSQANALKP----LMKTGVSLALRMTSMKPFVSITAEELVFGYDDTLT 491
I+ W+E + P L+ +S P + +
Sbjct: 214 --NILEWLENP------SNTPDKDYLLSIPISC--------PLI-------------GVI 244
Query: 492 SLAN-RFFPK--GKRPPRKMGLFLGR-NGTISEVQTIYTGHGGMENFGYMDKLNGLDHLP 547
LA+ K G P G G Q + T +
Sbjct: 245 QLAHYVVTAKLLGFTP----GELRSYLKGATGHSQGLVTAVA-------------IAETD 287
Query: 548 YWDEAPCNAIKASEGSF---------FPPRDLTKSDLVHVYDKDLCRIWPLRYRRDVEKD 598
W+ + KA F +P L S L +D
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL---------------------ED 326
Query: 599 GLKAGYYTPDDEIFSP-----GESQPENKCYCPGQTKCPPKGLQ-NISPCQFANLLQSNL 652
L+ P SP +Q + + Y P G Q IS L
Sbjct: 327 SLENNEGVP-----SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS-----------L 370
Query: 653 SNSLNLPNLFVVSRYYDILKRDRVVPSSWLDKGLDASWKTHSHEGDNLGHLRQHQI---D 709
N VVS P S L GL+ + L Q +I +
Sbjct: 371 VNG---AKNLVVSGP----------PQS-L-YGLN----LTLRKAKAPSGLDQSRIPFSE 411
Query: 710 ETPNIMNAF-PTLIGSVFLVSPFQAALLCSYNYIGLSFLESARGKEFVSLFEILNLP--- 765
N F P V SPF + LL + + + + + +P
Sbjct: 412 RKLKFSNRFLP-----VA--SPFHSHLLVPASDL---INKDLVKNNVSFNAKDIQIPVYD 461
Query: 766 -----NL-----FVVSRYYDILKRDRVLPSSWLDKGLDASWKTHVTYYDDSQTTPDVDRN 815
+L + R D + R V W + TH+ + P
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVK---W-ETTTQFK-ATHILDFG-----PGGASG 511
Query: 816 ITPL-QR------VRII 825
+ L R VR+I
Sbjct: 512 LGVLTHRNKDGTGVRVI 528
Score = 40.8 bits (95), Expect = 0.003
Identities = 85/518 (16%), Positives = 136/518 (26%), Gaps = 210/518 (40%)
Query: 59 PLLRNGTISEVQTIYTGHGGMENFGYMDKLNGLDHLPYWDEAPCNAIKASEGSFFPPRDL 118
L R Q + GG G N D Y++E RDL
Sbjct: 144 ALFRAVGEGNAQ-LVAIFGG---QG-----NTDD---YFEEL---------------RDL 176
Query: 119 TKS------DLVHVYDKDLCRIWPLRYRRDVEK---DG------LKAGYYTPDDEIFSPG 163
++ DL+ + L + +R D EK G L+ TPD +
Sbjct: 177 YQTYHVLVGDLIKFSAETLSEL--IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL--- 231
Query: 164 ESQPENKCYCPGQTKCPPKGLQNISPCQFDAPVFLSFPHFYKADP-ELLDAVEGLTPNQE 222
P CP G+ Q ++ P EL ++G T + +
Sbjct: 232 -------LSIP--ISCPLIGV-----IQLAH--YVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 223 KHETFFKIQPKLGVPLEAAVRVQLNLAVEESNIHVVRGFRSITFPIMWVEEGIGDLPPNI 282
G+ + A +A +S
Sbjct: 276 ------------GL-VTAVA-----IAETDS----------------------------- 288
Query: 283 HRWIYLATSFAPNIAPILEYGFII-------FGSLVLIVVFVRAYK-------------- 321
W SF ++ + F I + + L +
Sbjct: 289 --W----ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 322 --SLVFTQENLERGREKLRRGSS-FI--VNGQHRLMII----RDSYSL------------ 360
+ Q+ + + L G I VNG + +++ + Y L
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNG-AKNLVVSGPPQSLYGLNLTLRKAKAPSG 401
Query: 361 LGNHNAP----------VFL--SFP-HFYKADPELLDAVEGLTPNQEKHETFFKIQPKLG 407
L P FL + P H L+ A + + + K+ F +
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFH----SHLLVPASDLINKDLVKNNVSFN-AKDIQ 456
Query: 408 VPLEAAVRVQLNLAVEESNIHVVRGFRSIT-FPIMWVEETLTSQAN-----------ALK 455
+P+ +L V +I R I P+ W E T +A L
Sbjct: 457 IPVY-DTFDGSDLRVLSGSI-SERIVDCIIRLPVKW-ETTTQFKATHILDFGPGGASGLG 513
Query: 456 PLMK-----TGVSLALRMTSMKPFVSITAEELVFGYDD 488
L TGV + I A L DD
Sbjct: 514 VLTHRNKDGTGVRV------------IVAGTLDINPDD 539
Score = 31.2 bits (70), Expect = 2.4
Identities = 40/262 (15%), Positives = 77/262 (29%), Gaps = 128/262 (48%)
Query: 204 YKADPELLDAVEGLTPNQEKHETFFKIQPKLGVPLEAAVRVQLNLAVEESNIHVVRGFRS 263
++++ LL T QP L +E++ ++
Sbjct: 1719 FRSEKGLLS----ATQFT---------QPAL-------------TLMEKAAFEDLK---- 1748
Query: 264 ITFPIMWVEEGIGDLPPNI----HRWIYLATSFAPNIAPIL-EY-------GFIIFGSLV 311
+G+ +P + H S L EY + SLV
Sbjct: 1749 --------SKGL--IPADATFAGH-------S--------LGEYAALASLADVMSIESLV 1783
Query: 312 LIVVFVR--AYKSLV-----------------------FTQENLERGREKLRRGSSFIVN 346
+V F R + V F+QE L+ E++ + + ++V
Sbjct: 1784 EVV-FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV- 1841
Query: 347 GQHRLMIIRDSYSLLGNHNAP---VFLSFPHFYKADPELLDAVEGLTPNQEKHETFFKIQ 403
+ I+ N+N + D LD V + F K+Q
Sbjct: 1842 -E----IV--------NYNVENQQYVAA------GDLRALDTVTNVL-------NFIKLQ 1875
Query: 404 P-KLGVPLEAAVRVQLNLAVEE 424
+ + L+ ++ ++ VE
Sbjct: 1876 KIDI-IELQKSLSLE---EVEG 1893
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.16
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 85 MDKLNG-LD-HLPYWDEAPCNAIKAS 108
+ KL L + D AP AIKA+
Sbjct: 22 LKKLQASLKLYAD--DSAPALAIKAT 45
Score = 33.4 bits (75), Expect = 0.16
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 537 MDKLNG-LD-HLPYWDEAPCNAIKAS 560
+ KL L + D AP AIKA+
Sbjct: 22 LKKLQASLKLYAD--DSAPALAIKAT 45
>2yij_A Phospholipase A1-iigamma; hydrolase; 2.00A {Arabidopsis thaliana}
Length = 419
Score = 32.8 bits (74), Expect = 0.61
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 663 VVSRYYDILKRDRVVPSSW-------LDKGLDASWKTHSHEGDNLGHL 703
+V++ D LK + +VP W + + D SW+ HE D+ L
Sbjct: 370 LVNKSVDGLKDECMVPGKWRVLKNKGMAQQDDGSWELVDHEIDDNEDL 417
>3qt9_A Putative uncharacterized protein CPE0426; alpha-alpha six fold,
glycoside hydrolase, mannosidase, HYDR; HET: YDR; 2.05A
{Clostridium perfringens} PDB: 3qt3_A* 2nvp_A
Length = 427
Score = 31.1 bits (70), Expect = 1.8
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 336 KLRRGSSFIVNGQHRLMIIRDSYSLLGNHNAPVFLSFPHFYKADPELLDAVEGLTPNQEK 395
++ G +F++ G M +RDS S + + F K PEL GL Q K
Sbjct: 45 EVSEGDAFVITGDIPAMWLRDSTSQV--------EHYLPFVKEYPELKAIFTGLINRQVK 96
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 29.0 bits (65), Expect = 9.4
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 12/78 (15%)
Query: 147 GLKAGYYTPDDEIFSPGESQP---ENKCYCPGQTKCPPKGLQNISPCQF--------DAP 195
G Y D P +P E+ G P + ++
Sbjct: 320 GAPWMDYVLGDAFALPPALEPFYSEHVLRLQG-AFQPSDTSRVVAEPPSRTQCGLPEQGV 378
Query: 196 VFLSFPHFYKADPELLDA 213
V F + YK +P+ +
Sbjct: 379 VLCCFNNSYKLNPQSMAR 396
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.425
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,642,182
Number of extensions: 917056
Number of successful extensions: 1691
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1679
Number of HSP's successfully gapped: 20
Length of query: 927
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 825
Effective length of database: 3,853,851
Effective search space: 3179427075
Effective search space used: 3179427075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.0 bits)