RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11460
         (927 letters)



>d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus
           thermophilus [TaxId: 274]}
          Length = 208

 Score = 29.0 bits (64), Expect = 2.2
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 4/75 (5%)

Query: 607 PDDEIFSPGESQPENKCYCPGQTKCPPKGLQNISPCQFANLLQSNLSNSLNLPNLFVVSR 666
            + ++         N             GL            +     + NLP +  ++ 
Sbjct: 119 REGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTGNELVRRAARNLPWVVTLAP 178

Query: 667 Y----YDILKRDRVV 677
                YDI++ +R+V
Sbjct: 179 EGLNVYDIVRTERLV 193


>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428
           {Clostridium perfringens [TaxId: 1502]}
          Length = 426

 Score = 28.6 bits (64), Expect = 3.9
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 8/61 (13%)

Query: 336 KLRRGSSFIVNGQHRLMIIRDSYSLLGNHNAPVFLSFPHFYKADPELLDAVEGLTPNQEK 395
           ++  G +F++ G    M +RDS              +  F K  PEL     GL   Q K
Sbjct: 44  EVSEGDAFVITGDIPAMWLRDS--------TSQVEHYLPFVKEYPELKAIFTGLINRQVK 95

Query: 396 H 396
            
Sbjct: 96  C 96


>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 238

 Score = 28.1 bits (62), Expect = 4.6
 Identities = 9/68 (13%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 64  GTISEVQTIYTGHGGMENFGYMDKLNGLDHLPYWDEAPCNAIKASEGSFFPPRDLTKSDL 123
               + + +  G        Y+++          +E   + ++A   +    +DLT  ++
Sbjct: 148 ANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNV 207

Query: 124 -VHVYDKD 130
            + +  KD
Sbjct: 208 SIGIVGKD 215



 Score = 28.1 bits (62), Expect = 4.6
 Identities = 9/68 (13%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 516 GTISEVQTIYTGHGGMENFGYMDKLNGLDHLPYWDEAPCNAIKASEGSFFPPRDLTKSDL 575
               + + +  G        Y+++          +E   + ++A   +    +DLT  ++
Sbjct: 148 ANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNV 207

Query: 576 -VHVYDKD 582
            + +  KD
Sbjct: 208 SIGIVGKD 215


>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781
           {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 443

 Score = 28.2 bits (63), Expect = 5.0
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 8/58 (13%)

Query: 339 RGSSFIVNGQHRLMIIRDSYSLLGNHNAPVFLSFPHFYKADPELLDAVEGLTPNQEKH 396
           +  +F+  G    M +RDS + +          +      DPEL   + G+   Q K 
Sbjct: 55  KEDTFVYTGDIHAMWLRDSGAQV--------WPYVQLANKDPELKKMLAGVINRQFKC 104


>d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 170

 Score = 27.7 bits (61), Expect = 5.1
 Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 17/105 (16%)

Query: 356 DSYSLLGNHNAPVFLSFPHFYKADPELLDAVEGLTPNQEKHETFFKIQPKLGVPL----- 410
            +YS         F+      K +      +     +   H    KI       L     
Sbjct: 6   TNYSERHTELPGHFIGLNTVDKLEE---SPLRDFVKSHGGHTVISKI-------LIANNG 55

Query: 411 EAAVRVQLNLAVEESNIHVVRGFRSITFPIMWVEETLTSQANALK 455
            AAV+     +V +         R++ F  M   E L + A  ++
Sbjct: 56  IAAVKEI--RSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIR 98


>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 26.7 bits (58), Expect = 8.8
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 824 IIRREKNFTSFPDDSASPYRLFKRFTVPLSSTDVATTTLNGFVFVVTMTPDN---TLEMT 880
           I+RR   F  F D  A P+  F+     +S     T            TP+      ++ 
Sbjct: 2   IVRRSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLP 61

Query: 881 VKVKPDV 887
              K +V
Sbjct: 62  GVKKEEV 68


>d2gycc1 c.22.1.1 (C:1-198) Ribosomal protein L4 {Escherichia coli
           [TaxId: 562]}
          Length = 198

 Score = 27.0 bits (59), Expect = 9.5
 Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 4/25 (16%)

Query: 657 NLPNLFVVSRY----YDILKRDRVV 677
           NL  + V          ++  D+VV
Sbjct: 163 NLHKVDVRDATGIDPVSLIAFDKVV 187


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,619,514
Number of extensions: 180602
Number of successful extensions: 338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 11
Length of query: 927
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 833
Effective length of database: 1,116,976
Effective search space: 930441008
Effective search space used: 930441008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)