BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11461
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 236 bits (602), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 132/281 (46%), Positives = 172/281 (61%), Gaps = 42/281 (14%)
Query: 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
S +ELK++GNR F R+Y EA CY RAI +NP++ Y+TNRALCYLK++Q DCR
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 73 KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKK 132
+ALEL+ VKA FFLGQ E+ YDEA+ +LQRAY L++EQ LN+GDDI LRIAKK
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122
Query: 133 KRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDA-VQEAVMRIEA 191
KRW EE+RI QE EL +YL RLI + E+EL +R+ E DG Q+A IEA
Sbjct: 123 KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQAC--IEA 180
Query: 192 RRDRSMAELNDLFVAIDERRRK-------------------------------------- 213
+ D+ MA++++LF +DE+R+K
Sbjct: 181 KHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQ 240
Query: 214 -VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
VGHF+PVTR L+ +QLIPN AMKEV+D F+ EN W +Y
Sbjct: 241 RVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVEDY 281
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/130 (58%), Positives = 95/130 (73%)
Query: 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
S +ELK++GNR F R+Y EA CY RAI +NP++ Y+TNRALCYLK++Q DCR
Sbjct: 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 67
Query: 73 KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKK 132
+ALEL+ VKA FFLGQ E+ YDEA+ +LQRAY L++EQ LN+GDDI LRIAKK
Sbjct: 68 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127
Query: 133 KRWAETEEKR 142
KRW EE+R
Sbjct: 128 KRWNSIEERR 137
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 98/178 (55%), Gaps = 44/178 (24%)
Query: 115 QNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAET 174
Q LN+GDDI LRIAKKKRW EEKRI+QE EL YL++LI + E+EL + ++
Sbjct: 7 QRLNFGDDIPSALRIAKKKRWNSIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDD 66
Query: 175 KRLDGDAVQEAVMRIEARRDRSMAELNDLFVAIDERRRK--------------------- 213
+ GD + +++++ D+ + ++++LF +DE+R+K
Sbjct: 67 SQNGGD-----ISKMKSKHDKYLMDMDELFSQVDEKRKKREIPDYLCGKISFELMREPCI 121
Query: 214 ------------------VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
VGHFDPVTR L+ DQLIPN AMKEV+D F+QEN W +Y
Sbjct: 122 TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWVEDY 179
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%)
Query: 17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76
LK EGN + +E A++ Y +AI NP YF NRA Y KL Y DC +A+
Sbjct: 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74
Query: 77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
++P+ KA +G AL +N + EAV + ++A +L
Sbjct: 75 IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 65.1 bits (157), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 36/47 (76%)
Query: 207 IDERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
I+E ++VGHF+PVTR L+ +QLIPN AMKEV+D F+ EN W +Y
Sbjct: 32 IEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVEDY 78
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 65.1 bits (157), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/41 (68%), Positives = 34/41 (82%)
Query: 207 IDERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQEN 247
I+E ++VGHFDPVTR L+ DQLIPN AMKEV+D F+QEN
Sbjct: 40 IEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQEN 80
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%)
Query: 17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76
+K++GN F Y +A+ YT AI +NP ++NRA CY KL ++ DC + ++
Sbjct: 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ 78
Query: 77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
LEP+ +K AL + Y +A+ Q+A DL
Sbjct: 79 LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
SDK LK EGN ++Y +AI+ YT+A+ P P Y +NRA Y Q+ +D
Sbjct: 11 SDK-LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAE 69
Query: 73 KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKK 132
A ++P KA LG A ++ Y K + AY+ E N G D
Sbjct: 70 LATVVDPKYSKAWSRLGLARFDMADY----KGAKEAYEKGIEAEGNGGSDA--------M 117
Query: 133 KRWAETEEKRI 143
KR ET +++I
Sbjct: 118 KRGLETTKRKI 128
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
GN Y+ Y+EAI Y +A+ +P + N Y K Y + +KALEL+P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
+A + LG A ++ YDEA+++ Q+A +L
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 51 FTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYD 110
+ N Y K Y + +KALEL+P+ +A + LG A ++ YDEA+++ Q+A +
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 111 L 111
L
Sbjct: 72 L 72
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
GN Y+ Y+EAI Y +A+ +P + N Y K Y + +KALEL+P+
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
Query: 81 LVKAQFFLGQA 91
+A+ LG A
Sbjct: 110 NAEAKQNLGNA 120
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
GN Y+ Y+EAI Y +A+ +P + N Y K Y + +KALEL+P
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
+A + LG A ++ YDEA+++ Q+A +L
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
GN Y+ Y+EAI Y +A+ +P + N Y K Y + +KALEL+P
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
+A + LG A ++ YDEA+++ Q+A +L
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 51 FTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYD 110
+ N Y K Y + +KALEL+P +A + LG A ++ YDEA+++ Q+A +
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 111 L 111
L
Sbjct: 64 L 64
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP 79
GN Y+ Y+EAI Y +A+ +P + N Y K Y + +KALEL+P
Sbjct: 76 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
ELK + N YF + YE AI Y++AI NP Y+ NR+L YL+ + Y + +D +A+
Sbjct: 23 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAI 82
Query: 76 ELEPSLVKAQF 86
EL+ +K +
Sbjct: 83 ELDKKYIKGYY 93
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
ELK + N YF + YE AI Y++AI NP Y+ NR+L YL+ + Y + D +A+
Sbjct: 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 74
Query: 76 ELEPSLVKAQF 86
EL+ +K +
Sbjct: 75 ELDKKYIKGYY 85
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
+ELK + N YF + YE AI Y++AI NP Y+ NR+L YL+ + Y + D +A
Sbjct: 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 66
Query: 75 LELEPSLVKAQF 86
+EL+ +K +
Sbjct: 67 IELDKKYIKGYY 78
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAI----------------IKNPVIPSYFTNRA 55
L ++LK+ GN +F + +E AI YT+ + PV S N
Sbjct: 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG 280
Query: 56 LCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
C LK+ + D C +ALE++PS KA + Q + YD+A+ L++A +++ E
Sbjct: 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
GN Y+ Y+EAI Y +A+ P + N Y K Y + +KALEL P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
+A + LG A ++ YDEA+++ Q+A +L
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 51 FTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYD 110
+ N Y K Y + +KALEL P+ +A + LG A ++ YDEA+++ Q+A +
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 111 L 111
L
Sbjct: 72 L 72
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
GN Y+ Y+EAI Y +A+ P + N Y K Y + +KALEL P+
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 109
Query: 81 LVKAQFFLGQA 91
+A+ LG A
Sbjct: 110 NAEAKQNLGNA 120
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS----YFTNRALCYLKLKQ 63
T S ++L+ EGN F Y A+ YT+A+ + P NRA C+LKL+
Sbjct: 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLED 80
Query: 64 YVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
Y + KA+E + VKA + QAL ++ D+AV LQR L
Sbjct: 81 YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
S + K+ GN Y+ Y++AI Y +A+ +P S + N Y K Y + +
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 73 KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
KALEL+P+ KA + G A ++ Y +A++ Q+A +L
Sbjct: 68 KALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALEL 106
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
GN Y+ Y++AI Y +A+ +P + R Y K Y +D +KALEL+P+
Sbjct: 50 GNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Query: 81 LVKAQFFLGQA 91
KA+ LG A
Sbjct: 110 NAKAKQNLGNA 120
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%)
Query: 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDD 70
++ +E + EG YF + A+ YT I + P ++NRA KL + D
Sbjct: 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 60
Query: 71 CRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
C KA+E +P+ V+A A + Y A++ L A
Sbjct: 61 CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 98
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
E + EG YF + A+ YT I + P ++NRA KL + DC KA+
Sbjct: 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI 200
Query: 76 ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
E +P+ V+A A + Y A++ L A
Sbjct: 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 15/130 (11%)
Query: 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCD 69
+++DKE K EGN+++ RQ++EAI Y +A + I +Y NRA + +Y
Sbjct: 2 GSMADKE-KAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAIS 59
Query: 70 DCRKALE------LEPSLVKAQFF-LGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDD 122
A+E + ++ F +G A H++ + +++ Q++ R D
Sbjct: 60 TLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA------D 113
Query: 123 IACQLRIAKK 132
I +LR A+K
Sbjct: 114 ILTKLRNAEK 123
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
+E K++GN YF Y A+ Y A+ ++P ++NRA C KL ++ DDC
Sbjct: 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTC 73
Query: 75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYD 110
+ L+ +K L + + +A QRAY+
Sbjct: 74 IRLDSKFIKGYIRKAACLVAMREWSKA----QRAYE 105
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
+LK+ GN +F + + EAI Y AI +P P +++N + CY+ + KAL
Sbjct: 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKAL 86
Query: 76 ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112
E++P KA A + ++ +A+ +DLS
Sbjct: 87 EIKPDHSKALLRRASANESLGNFTDAM------FDLS 117
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 4 SHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ 63
S+ F L+DKE E ++F +A+ NP P + +R Y L+
Sbjct: 278 SYIFLALTLADKENSQEFFKFF------------QKAVDLNPEYPPTYYHRGQMYFILQD 325
Query: 64 YVHCCDDCRKALELEP 79
Y + +D +KA L P
Sbjct: 326 YKNAKEDFQKAQSLNP 341
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
+LK+ GN +F + + EAI Y AI +P P +++N + CY+ + KAL
Sbjct: 23 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKAL 82
Query: 76 ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112
E++P KA A + ++ +A+ +DLS
Sbjct: 83 EIKPDHSKALLRRASANESLGNFTDAM------FDLS 113
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 4 SHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ 63
S+ F L+DKE E ++F +A+ NP P + +R Y L+
Sbjct: 274 SYIFLALTLADKENSQEFFKFF------------QKAVDLNPEYPPTYYHRGQMYFILQD 321
Query: 64 YVHCCDDCRKALELEP 79
Y + +D +KA L P
Sbjct: 322 YKNAKEDFQKAQSLNP 337
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
ELK++GN+ + ++A+ CY+ AI +P ++NR+ Y K Y +D K +
Sbjct: 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65
Query: 76 ELEPSLVKAQFFLGQALHEINHYDEA 101
+L+P K AL +N ++EA
Sbjct: 66 DLKPDWGKGYSRKAAALEFLNRFEEA 91
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 18 KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
K++GN F Y EA++CY + I P P ++N+A+ +KL +Y C++ L
Sbjct: 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 9 TNNLSDKEL--KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVH 66
+N ++D + KD GN + + +E+A Y +AI +P +++ N+A Y + K++
Sbjct: 1 SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60
Query: 67 CCDDCRKALELEPS-------LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117
C C KA+E+ + KA G A + N AV+ R+ R+ L
Sbjct: 61 CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPEL 118
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Query: 18 KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77
D GN L + EEA CY +AI P ++N + + KA+ L
Sbjct: 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198
Query: 78 EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIAC 125
+P+ + A LG L E +D AV RA LS + +G ++AC
Sbjct: 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG-NLAC 245
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 24 YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK 83
+F R+ + + + T AI +NP++ ++N Y + Q + R AL L+P +
Sbjct: 43 HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID 102
Query: 84 AQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIAC 125
L AL + AV+ A L Y D+ C
Sbjct: 103 GYINLAAALVAAGDMEGAVQAYVSA--------LQYNPDLYC 136
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
GN R ++ A+ Y RA+ +P N A Y + D R+A+EL+P
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269
Query: 81 LVKAQFFLGQALHEINHYDEA 101
A L AL E EA
Sbjct: 270 FPDAYCNLANALKEKGSVAEA 290
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 17 LKDEGNRYFGLRQYEEAINCYTRAI-IKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
LKD+GN++F ++Y++AI Y A+ +K P +++N + CY+ + + KAL
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKED--PVFYSNLSACYVSVGDLKKVVEMSTKAL 66
Query: 76 ELEPSLVK 83
EL+P K
Sbjct: 67 ELKPDYSK 74
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 51 FTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYD 110
+ N Y K Y + +KALEL+P+ +A + LG A ++ YDEA+++ Q+A +
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 111 L 111
L
Sbjct: 72 L 72
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
GN Y+ Y+EAI Y +A+ +P + N Y K Y + +KALEL+P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 81 LVKAQFFLGQA 91
+A+ LG A
Sbjct: 76 NAEAKQNLGNA 86
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 17 LKDEGNRYFGLRQYEEAINCYTRAI---------------IKNPVIPSYFTNRALCYLKL 61
+K++G YF +Y +A+ Y + + + + F N A+CYLKL
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 62 KQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112
++Y + C KAL L+ + K + G+A +N ++ A ++ +++
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 51 FTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYD 110
+ N Y K Y + +KALEL+P +A + LG A ++ YDEA+++ Q+A +
Sbjct: 6 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Query: 111 L 111
L
Sbjct: 66 L 66
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP 79
GN Y+ Y+EAI Y +A+ +P + N Y K Y + +KALEL+P
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 17 LKDEGNRYFGLRQYEEAINCYTRAI---------------IKNPVIPSYFTNRALCYLKL 61
+K++G YF +Y +A+ Y + + + + F N A+CYLKL
Sbjct: 271 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 62 KQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112
++Y + C KAL L+ + K + G+A +N ++ A ++ +++
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 21/150 (14%)
Query: 17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNR----------------ALCYLK 60
+K+ G YF +Y++A+ Y + I+ S F+N A+C+LK
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKK-IVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK 208
Query: 61 LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
L+ + + C KALEL+ + K F G+A +N ++ A Q+ L
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 268
Query: 121 DDIACQLRI----AKKKRWAETEEKRIAQE 146
CQ RI A++K+ +R+A+E
Sbjct: 269 QLAVCQQRIRRQLAREKKLYANMFERLAEE 298
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%)
Query: 29 QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88
+Y++A++C+T A+ P + Q R+ALEL+P +++++ L
Sbjct: 232 EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 291
Query: 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWA 136
G + + + EAV+H A ++ R+ G+ A I R A
Sbjct: 292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 339
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%)
Query: 29 QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88
+Y++A++C+T A+ P + Q R+ALEL+P +++++ L
Sbjct: 183 EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 242
Query: 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWA 136
G + + + EAV+H A ++ R+ G+ A I R A
Sbjct: 243 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 290
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%)
Query: 29 QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88
+Y++A++C+T A+ P + Q R+ALEL+P +++++ L
Sbjct: 192 EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 251
Query: 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWA 136
G + + + EAV+H A ++ R+ G+ A I R A
Sbjct: 252 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 299
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%)
Query: 29 QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88
+Y++A++C+T A+ P + Q R+ALEL+P +++++ L
Sbjct: 192 EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 251
Query: 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWA 136
G + + + EAV+H A ++ R+ G+ A I R A
Sbjct: 252 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 299
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%)
Query: 29 QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88
+Y++A++C+T A+ P + Q R+ALEL+P +++++ L
Sbjct: 169 EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 228
Query: 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWA 136
G + + + EAV+H A ++ R+ G+ A I R A
Sbjct: 229 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 276
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 16/113 (14%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAI----------------IKNPVIPSYFTNRALCYL 59
++K+EGN +F + EAI Y A+ K + S N A CY
Sbjct: 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN 99
Query: 60 KLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112
K K Y D K L+++ + VKA + LG A +EA ++L +A L+
Sbjct: 100 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 17/129 (13%)
Query: 17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNR----------------ALCYLK 60
+K+ G YF +Y++A+ Y + I+ S F+N A+C+LK
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKK-IVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK 208
Query: 61 LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
L+ + + C KALEL+ + K G+A +N ++ A Q+ L
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 268
Query: 121 DDIACQLRI 129
CQ RI
Sbjct: 269 QLAVCQQRI 277
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDC 71
L +KEL GN + + ++ A+ Y +A +P +Y TN+A Y + Y C + C
Sbjct: 5 LKEKEL---GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 72 RKALEL 77
KA+E+
Sbjct: 62 EKAIEV 67
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDC 71
L +KEL GN + + ++ A+ Y +A +P +Y TN+A Y + Y C + C
Sbjct: 5 LKEKEL---GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 72 RKALEL 77
KA+E+
Sbjct: 62 EKAIEV 67
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G+ F + + + AI+ RAI N V + L Y + ++ + K + ++P
Sbjct: 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG 139
Query: 81 LVKAQFFLGQALHEINHYDEAVKHL 105
++A +G A DEAVK+
Sbjct: 140 FIRAYQSIGLAYEGKGLRDEAVKYF 164
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
GN ++ + A+ CYTRAI NP +N A + R AL+L+P
Sbjct: 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143
Query: 81 LVKAQFFLGQALHEI---NHYDEAVKHL 105
A L L + YDE +K L
Sbjct: 144 FPDAYCNLAHCLQIVCDWTDYDERMKKL 171
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 42/112 (37%), Gaps = 25/112 (22%)
Query: 18 KDEGNRYFGLRQYEEAINCYTRAI---------------------IKNPVIPSYFTNRAL 56
K +GN F + EEA+ Y AI +KNP N A
Sbjct: 183 KMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPC----HLNIAA 238
Query: 57 CYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
C +KLK+Y C L E KA F G+A E+ D A ++A
Sbjct: 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKA 290
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein,
T-Mod(Vmy), In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein,
T-Mod(Vmy), In Complex With Meevf Peptide
Length = 128
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDC 71
L +KEL GN + + ++ A+ Y +A +P +Y N+A Y + Y C + C
Sbjct: 5 LKEKEL---GNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELC 61
Query: 72 RKALEL 77
KA+E+
Sbjct: 62 EKAIEV 67
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 38/86 (44%)
Query: 29 QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88
++ AI+ + A+ P S + + + +ALE++P +++++ L
Sbjct: 228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNL 287
Query: 89 GQALHEINHYDEAVKHLQRAYDLSRE 114
G + + Y EAV + A L R+
Sbjct: 288 GISCINLGAYREAVSNFLTALSLQRK 313
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDC 71
L + L G+ G+ +E A+ T + I S N Y L Y +
Sbjct: 14 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGN---AYFYLHDYAKALEYH 70
Query: 72 RKALELEPSL------VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGD 121
L L ++ KA LG L + ++DEA+ QR D+SRE N G+
Sbjct: 71 HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 126
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 43 KNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAV 102
+NP Y+ L Y Y D KA++L+P K G+AL+ + Y+EAV
Sbjct: 4 QNP--EEYYLEGVLQY-DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
>pdb|4G1T|A Chain A, Crystal Structure Of Interferon-Stimulated Gene 54
pdb|4G1T|B Chain B, Crystal Structure Of Interferon-Stimulated Gene 54
Length = 472
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 26 GLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYV---HCCDDCRKALELEPSLV 82
G Q E A C+ +A+ K P P + + A+ +L + + D R+A+ L P
Sbjct: 150 GGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209
Query: 83 KAQFFLGQALHEI 95
+ L LH++
Sbjct: 210 YLKVLLALKLHKM 222
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDC 71
L + L G+ G+ +E A+ T + I S N Y L Y +
Sbjct: 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGN---AYFYLHDYAKALEYH 66
Query: 72 RKALELEPSL------VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGD 121
L L ++ KA LG L + ++DEA+ QR D+SRE N G+
Sbjct: 67 HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDC 71
L + L G+ G+ +E A+ T + I S N Y L Y +
Sbjct: 12 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGN---AYFYLHDYAKALEYH 68
Query: 72 RKALELEPSL------VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGD 121
L L ++ KA LG L + ++DEA+ QR D+SRE N G+
Sbjct: 69 HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 124
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 41/91 (45%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G Y +++Y+ A+ + NPV + + L ++ D + AL L P+
Sbjct: 83 GLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
K + + ++ ++EA+ H ++A +L
Sbjct: 143 EGKVHRAIAYSYEQMGSHEEALPHFKKANEL 173
>pdb|3ULQ|A Chain A, Crystal Structure Of The Anti-Activator Rapf Complexed
With The Response Regulator Coma Dna Binding Domain
Length = 383
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 28 RQYEEAINCYTRA-----IIKNPVIPS-YFTNRALCYLKLKQYVHCCDDCRKALELEPS- 80
R+Y AI + +A +K+ + + +F + Y +KQ D R+A E+
Sbjct: 117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH 176
Query: 81 ------LVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112
L++ ++ Y++A+ H Q+AY ++
Sbjct: 177 EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA 214
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 18/108 (16%)
Query: 17 LKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSY----------FTNRALCY 58
L+ +GN F + Y+EAI+ Y A+ + P P + + N + CY
Sbjct: 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCY 73
Query: 59 LKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQ 106
L + + + L+ E + KA F +A DEA + L+
Sbjct: 74 LNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/91 (19%), Positives = 41/91 (45%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G Y +++Y+ A+ + NP+ + + L ++ D + AL L P+
Sbjct: 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPN 142
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
K + + ++ ++EA+ H ++A +L
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173
>pdb|3HJC|A Chain A, Crystal Structure Of The Carboxy-Terminal Domain Of Hsp90
From Leishmania Major, Lmjf33.0312
Length = 444
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 174 TKRLDGDAVQEAVMRIEARRDRSMA---------ELNDLFVAIDERRRKVG 215
T A E +MR +A RD SMA ELN I E RR+VG
Sbjct: 327 TSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVG 377
>pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin
Conjugation Factor E4a
Length = 98
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 218 DPVTRVKLSADQLIPNFAMKEVVDNFLQE 246
DP R L+ DQ+ PN +KE + +L E
Sbjct: 60 DPFNRSPLTMDQIRPNTELKEKIQRWLAE 88
>pdb|3Q4I|A Chain A, Crystal Structure Of Cdp-Chase In Complex With Gd3+
pdb|3Q4I|B Chain B, Crystal Structure Of Cdp-Chase In Complex With Gd3+
Length = 205
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 13/134 (9%)
Query: 51 FTNRALCYLKLKQYVHCCDDCRKALE-------LEPSLVKAQFFLGQALHEINHYDEAVK 103
F N L ++K K D + AL P+ V A+ + +E++H+
Sbjct: 76 FQNEKLLFVKEKS------DGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAI 129
Query: 104 HLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEK 163
+ + S Y I C++ +KK ETEE E EL TED K
Sbjct: 130 FDKEKHQPSPSATHVYKIFIGCEIIGGEKKTSIETEEVEFFGENELPNLSIARNTEDQIK 189
Query: 164 ELGSIRRDAETKRL 177
E+ + +D + ++L
Sbjct: 190 EMFAYMKDPQKEKL 203
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/91 (19%), Positives = 41/91 (45%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G Y +++Y+ A+ + NP+ + + L ++ D + AL L P+
Sbjct: 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
K + + ++ ++EA+ H ++A +L
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/91 (19%), Positives = 41/91 (45%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G Y +++Y+ A+ + NP+ + + L ++ D + AL L P+
Sbjct: 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
K + + ++ ++EA+ H ++A +L
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,312,222
Number of Sequences: 62578
Number of extensions: 288628
Number of successful extensions: 943
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 797
Number of HSP's gapped (non-prelim): 148
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)