Query psy11461
Match_columns 253
No_of_seqs 307 out of 2126
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 19:02:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4642|consensus 100.0 1.3E-41 2.9E-46 264.9 19.5 243 7-253 3-284 (284)
2 KOG0553|consensus 99.9 1E-20 2.2E-25 153.4 13.4 106 10-115 77-182 (304)
3 KOG0548|consensus 99.8 2.1E-17 4.5E-22 142.8 15.9 144 10-158 354-501 (539)
4 PRK15359 type III secretion sy 99.7 5.6E-16 1.2E-20 117.0 15.5 104 14-117 24-127 (144)
5 KOG0550|consensus 99.7 1.9E-16 4E-21 133.2 13.0 182 10-213 245-433 (486)
6 PRK15363 pathogenicity island 99.7 4.3E-15 9.4E-20 111.3 14.8 104 11-114 32-135 (157)
7 KOG0543|consensus 99.7 3.1E-15 6.6E-20 126.3 15.5 117 12-133 206-337 (397)
8 KOG4234|consensus 99.7 1E-14 2.2E-19 112.1 15.9 104 12-115 93-201 (271)
9 KOG1126|consensus 99.6 1.3E-15 2.8E-20 134.7 11.9 114 4-117 411-524 (638)
10 PLN03088 SGT1, suppressor of 99.6 7.3E-15 1.6E-19 126.9 16.2 102 15-116 3-104 (356)
11 TIGR02552 LcrH_SycD type III s 99.6 1.4E-14 3.1E-19 107.9 15.1 110 6-115 9-118 (135)
12 KOG4626|consensus 99.6 3.5E-15 7.6E-20 131.2 13.3 148 9-156 247-394 (966)
13 PRK10370 formate-dependent nit 99.6 2.4E-14 5.3E-19 113.7 16.1 109 8-116 67-178 (198)
14 KOG4648|consensus 99.6 3.9E-15 8.5E-20 122.9 10.5 103 13-115 96-198 (536)
15 KOG4626|consensus 99.6 4.3E-15 9.4E-20 130.6 11.0 145 9-153 281-425 (966)
16 KOG0547|consensus 99.6 2.1E-14 4.6E-19 123.2 14.0 96 12-107 113-208 (606)
17 PRK11189 lipoprotein NlpI; Pro 99.6 4.2E-14 9.1E-19 119.4 14.2 106 11-116 61-166 (296)
18 KOG0548|consensus 99.5 7.1E-14 1.5E-18 121.2 10.3 104 14-117 2-105 (539)
19 TIGR00990 3a0801s09 mitochondr 99.5 3.9E-13 8.4E-18 124.5 16.0 134 10-143 327-460 (615)
20 COG3063 PilF Tfp pilus assembl 99.5 8.3E-13 1.8E-17 103.8 14.4 144 12-156 33-179 (250)
21 TIGR00990 3a0801s09 mitochondr 99.5 7.4E-13 1.6E-17 122.7 16.2 113 9-121 360-472 (615)
22 PRK12370 invasion protein regu 99.5 1.4E-11 3E-16 112.7 22.7 111 8-118 289-408 (553)
23 PF13414 TPR_11: TPR repeat; P 99.5 2.9E-13 6.3E-18 88.9 8.0 67 13-79 2-69 (69)
24 KOG0551|consensus 99.4 5E-12 1.1E-16 104.1 15.2 104 12-115 79-186 (390)
25 PRK12370 invasion protein regu 99.4 5.2E-12 1.1E-16 115.5 17.0 110 8-117 332-442 (553)
26 TIGR02795 tol_pal_ybgF tol-pal 99.4 5.5E-12 1.2E-16 91.3 13.5 102 14-115 2-109 (119)
27 cd00189 TPR Tetratricopeptide 99.4 4.1E-12 8.9E-17 86.8 12.1 99 16-114 2-100 (100)
28 KOG1125|consensus 99.4 7.3E-13 1.6E-17 115.8 9.6 117 12-128 428-549 (579)
29 KOG0624|consensus 99.4 7.6E-12 1.7E-16 103.7 14.5 107 9-115 33-139 (504)
30 PRK09782 bacteriophage N4 rece 99.4 1.2E-11 2.7E-16 118.5 17.9 102 14-115 609-710 (987)
31 PF13414 TPR_11: TPR repeat; P 99.4 1.8E-12 3.8E-17 85.1 8.4 67 47-113 2-69 (69)
32 COG3063 PilF Tfp pilus assembl 99.4 3.2E-11 7E-16 94.9 16.4 131 7-137 62-194 (250)
33 PRK02603 photosystem I assembl 99.4 1.1E-11 2.3E-16 96.5 13.9 108 8-115 29-153 (172)
34 KOG0545|consensus 99.4 1.7E-11 3.7E-16 97.2 14.6 104 13-116 177-298 (329)
35 PRK15179 Vi polysaccharide bio 99.4 2.1E-11 4.5E-16 113.0 17.0 132 10-141 82-213 (694)
36 TIGR02521 type_IV_pilW type IV 99.4 4.8E-11 1E-15 95.7 16.9 104 9-112 26-129 (234)
37 PRK15331 chaperone protein Sic 99.4 1.2E-11 2.5E-16 93.3 12.0 106 5-110 28-133 (165)
38 PRK15174 Vi polysaccharide exp 99.4 4.2E-11 9.1E-16 111.5 18.4 108 9-116 241-352 (656)
39 KOG0547|consensus 99.4 2.1E-11 4.5E-16 105.1 14.6 146 13-158 325-473 (606)
40 PRK11189 lipoprotein NlpI; Pro 99.4 5.2E-11 1.1E-15 100.6 16.5 103 8-111 92-194 (296)
41 PRK09782 bacteriophage N4 rece 99.3 2.2E-11 4.8E-16 116.8 15.3 137 11-148 573-709 (987)
42 TIGR02521 type_IV_pilW type IV 99.3 1.6E-10 3.4E-15 92.6 18.2 108 9-116 60-169 (234)
43 KOG1126|consensus 99.3 4.6E-12 9.9E-17 112.5 9.7 129 5-133 446-574 (638)
44 PRK15359 type III secretion sy 99.3 1.2E-11 2.6E-16 93.3 10.7 89 8-96 52-140 (144)
45 PF12895 Apc3: Anaphase-promot 99.3 4.1E-12 8.8E-17 86.8 7.4 81 27-108 2-84 (84)
46 PRK10370 formate-dependent nit 99.3 3.3E-11 7.2E-16 95.8 13.3 110 27-136 52-164 (198)
47 KOG1155|consensus 99.3 3.4E-11 7.4E-16 103.2 13.3 108 10-117 326-433 (559)
48 COG4235 Cytochrome c biogenesi 99.3 9.4E-11 2E-15 96.1 15.1 108 8-115 150-260 (287)
49 TIGR03302 OM_YfiO outer membra 99.3 2.6E-10 5.6E-15 93.0 17.8 109 8-116 27-149 (235)
50 KOG1155|consensus 99.3 1.2E-10 2.7E-15 99.8 15.9 107 9-115 359-465 (559)
51 CHL00033 ycf3 photosystem I as 99.3 1E-10 2.2E-15 90.6 13.4 105 11-115 32-153 (168)
52 KOG0376|consensus 99.3 7.5E-12 1.6E-16 107.9 7.3 103 13-115 3-105 (476)
53 PRK15174 Vi polysaccharide exp 99.3 2.2E-10 4.8E-15 106.7 16.8 109 9-117 279-387 (656)
54 PF13429 TPR_15: Tetratricopep 99.3 3.3E-11 7.2E-16 100.9 9.6 107 11-117 143-249 (280)
55 COG5010 TadD Flp pilus assembl 99.2 1.9E-10 4.2E-15 92.2 13.2 109 7-115 93-201 (257)
56 PF13432 TPR_16: Tetratricopep 99.2 3.3E-11 7.2E-16 78.1 7.3 62 54-115 3-64 (65)
57 PLN02789 farnesyltranstransfer 99.2 3.2E-10 6.8E-15 96.4 14.2 117 7-123 64-183 (320)
58 PF13432 TPR_16: Tetratricopep 99.2 6.4E-11 1.4E-15 76.7 7.6 65 18-82 1-65 (65)
59 KOG0624|consensus 99.2 6.1E-10 1.3E-14 92.5 15.0 181 25-222 280-468 (504)
60 TIGR02552 LcrH_SycD type III s 99.2 2.1E-10 4.6E-15 85.3 11.3 87 35-121 4-90 (135)
61 TIGR03302 OM_YfiO outer membra 99.2 4.8E-10 1E-14 91.4 13.9 109 7-115 63-199 (235)
62 PRK10803 tol-pal system protei 99.2 6.7E-10 1.5E-14 91.8 14.6 103 13-115 141-250 (263)
63 PRK15179 Vi polysaccharide bio 99.2 7.1E-10 1.5E-14 102.9 16.2 108 8-115 114-221 (694)
64 TIGR02917 PEP_TPR_lipo putativ 99.2 5.7E-10 1.2E-14 106.3 15.6 116 9-124 120-235 (899)
65 TIGR02917 PEP_TPR_lipo putativ 99.2 8E-10 1.7E-14 105.3 16.0 132 15-147 737-868 (899)
66 KOG4555|consensus 99.2 2.9E-09 6.2E-14 76.8 14.2 102 14-115 43-148 (175)
67 PRK11788 tetratricopeptide rep 99.2 1.9E-09 4.1E-14 94.3 16.0 106 10-115 137-247 (389)
68 KOG2076|consensus 99.1 6.8E-09 1.5E-13 95.3 19.5 126 11-136 136-261 (895)
69 PRK10049 pgaA outer membrane p 99.1 1.6E-09 3.5E-14 102.8 15.9 110 9-119 44-153 (765)
70 PRK11788 tetratricopeptide rep 99.1 5.4E-09 1.2E-13 91.4 17.0 102 15-116 108-214 (389)
71 KOG4162|consensus 99.1 8.3E-10 1.8E-14 99.8 11.9 107 10-116 680-788 (799)
72 PRK11447 cellulose synthase su 99.1 2.8E-09 6E-14 105.4 16.6 95 21-115 276-384 (1157)
73 PLN02789 farnesyltranstransfer 99.1 4.5E-09 9.8E-14 89.4 15.3 115 15-129 38-155 (320)
74 PF14559 TPR_19: Tetratricopep 99.1 5.7E-10 1.2E-14 72.8 7.3 67 24-90 1-67 (68)
75 KOG1173|consensus 99.1 1.6E-09 3.4E-14 95.0 11.9 109 7-115 407-522 (611)
76 PF13371 TPR_9: Tetratricopept 99.1 1.1E-09 2.3E-14 72.5 8.6 69 21-89 2-70 (73)
77 PRK11447 cellulose synthase su 99.1 3.9E-09 8.5E-14 104.4 16.1 107 10-116 599-705 (1157)
78 KOG1125|consensus 99.1 5.7E-09 1.2E-13 91.8 14.4 88 47-134 429-516 (579)
79 COG5010 TadD Flp pilus assembl 99.0 8.3E-09 1.8E-13 82.9 13.6 131 9-140 62-192 (257)
80 PRK10049 pgaA outer membrane p 99.0 4.6E-09 9.9E-14 99.7 14.2 104 13-116 358-461 (765)
81 KOG0553|consensus 99.0 1.8E-09 4E-14 88.2 9.4 92 8-99 109-200 (304)
82 PRK14574 hmsH outer membrane p 99.0 1.7E-08 3.8E-13 95.4 17.3 141 8-148 28-168 (822)
83 PLN03088 SGT1, suppressor of 99.0 4.3E-09 9.3E-14 91.1 12.3 89 8-96 30-118 (356)
84 PF09976 TPR_21: Tetratricopep 99.0 7.4E-09 1.6E-13 78.2 11.8 98 11-109 45-145 (145)
85 PRK10866 outer membrane biogen 99.0 3.5E-08 7.5E-13 80.9 16.6 117 12-130 30-170 (243)
86 PF13512 TPR_18: Tetratricopep 99.0 1.6E-08 3.4E-13 74.9 12.9 105 11-115 7-132 (142)
87 PF12688 TPR_5: Tetratrico pep 99.0 1.6E-08 3.5E-13 73.4 12.8 96 15-110 2-103 (120)
88 PF13429 TPR_15: Tetratricopep 99.0 1E-08 2.2E-13 85.9 13.6 121 13-133 109-231 (280)
89 PF13525 YfiO: Outer membrane 99.0 4.3E-08 9.3E-13 78.3 16.4 114 12-127 3-133 (203)
90 KOG0550|consensus 99.0 2.8E-08 6E-13 84.5 15.7 111 9-119 198-324 (486)
91 COG4783 Putative Zn-dependent 99.0 1.1E-07 2.3E-12 82.6 19.3 107 11-117 303-409 (484)
92 PRK15363 pathogenicity island 99.0 1.2E-08 2.6E-13 76.8 11.2 94 41-134 27-121 (157)
93 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 1.1E-08 2.5E-13 88.7 12.4 73 6-78 67-142 (453)
94 PRK14574 hmsH outer membrane p 98.9 3E-07 6.5E-12 87.2 22.5 110 9-119 97-206 (822)
95 COG4783 Putative Zn-dependent 98.9 6.8E-08 1.5E-12 83.8 16.4 107 8-114 334-440 (484)
96 cd05804 StaR_like StaR_like; a 98.9 2.2E-08 4.7E-13 86.5 13.4 107 7-113 107-217 (355)
97 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 6.3E-09 1.4E-13 90.3 9.7 69 43-111 70-141 (453)
98 KOG1308|consensus 98.9 5.1E-10 1.1E-14 92.9 2.8 102 13-114 113-214 (377)
99 COG1729 Uncharacterized protei 98.9 4.2E-08 9.2E-13 79.7 13.0 102 14-115 141-248 (262)
100 PRK11906 transcriptional regul 98.9 3.8E-08 8.2E-13 85.6 13.1 110 6-115 287-405 (458)
101 KOG2076|consensus 98.9 1.7E-07 3.6E-12 86.4 17.8 107 8-114 167-273 (895)
102 KOG1156|consensus 98.9 1E-06 2.2E-11 78.8 21.8 104 15-118 8-111 (700)
103 KOG3060|consensus 98.9 6.3E-07 1.4E-11 71.9 18.1 110 11-120 83-192 (289)
104 PF13371 TPR_9: Tetratricopept 98.9 1E-08 2.2E-13 67.8 6.7 61 55-115 2-62 (73)
105 PRK14720 transcript cleavage f 98.8 4.4E-07 9.6E-12 85.7 19.7 112 6-119 23-153 (906)
106 PRK02603 photosystem I assembl 98.8 9.2E-08 2E-12 74.3 12.8 75 45-119 32-109 (172)
107 CHL00033 ycf3 photosystem I as 98.8 1.7E-07 3.6E-12 72.5 14.1 97 21-117 6-107 (168)
108 KOG1840|consensus 98.8 4.4E-07 9.6E-12 81.1 18.4 108 7-114 192-315 (508)
109 PF13424 TPR_12: Tetratricopep 98.8 7.7E-09 1.7E-13 69.3 5.6 65 48-112 5-76 (78)
110 KOG1156|consensus 98.8 3.8E-07 8.3E-12 81.5 17.5 122 9-130 36-157 (700)
111 KOG1840|consensus 98.8 2.2E-07 4.7E-12 83.1 16.1 105 9-113 236-356 (508)
112 PF13424 TPR_12: Tetratricopep 98.8 7.4E-09 1.6E-13 69.4 5.0 69 10-78 1-76 (78)
113 KOG3060|consensus 98.8 6.5E-07 1.4E-11 71.9 16.5 110 7-116 113-225 (289)
114 KOG2003|consensus 98.8 1.4E-08 3.1E-13 87.3 7.5 112 9-120 485-596 (840)
115 KOG1173|consensus 98.8 6.1E-08 1.3E-12 85.3 11.1 114 5-118 303-416 (611)
116 PF06552 TOM20_plant: Plant sp 98.8 4E-07 8.7E-12 69.6 13.5 86 30-115 7-113 (186)
117 KOG2002|consensus 98.8 1.8E-07 3.9E-12 86.9 13.8 113 6-118 262-378 (1018)
118 KOG1127|consensus 98.7 7.7E-07 1.7E-11 83.0 17.3 109 10-118 488-632 (1238)
119 KOG1174|consensus 98.7 6.6E-07 1.4E-11 76.4 15.5 115 9-123 227-341 (564)
120 KOG2002|consensus 98.7 5E-07 1.1E-11 84.0 15.8 111 7-117 639-751 (1018)
121 cd00189 TPR Tetratricopeptide 98.7 2.5E-07 5.4E-12 62.5 10.9 67 50-116 2-68 (100)
122 PF14559 TPR_19: Tetratricopep 98.7 3.8E-08 8.3E-13 64.0 6.0 58 58-115 1-58 (68)
123 PRK10153 DNA-binding transcrip 98.7 4.8E-07 1E-11 81.8 14.9 138 9-147 334-484 (517)
124 PRK11906 transcriptional regul 98.7 5E-07 1.1E-11 78.7 14.2 133 16-148 257-404 (458)
125 KOG1128|consensus 98.7 1.5E-07 3.3E-12 85.0 11.4 105 14-118 485-589 (777)
126 PF04564 U-box: U-box domain; 98.7 1.1E-08 2.4E-13 67.7 3.1 40 210-249 34-73 (73)
127 COG4785 NlpI Lipoprotein NlpI, 98.7 9.9E-07 2.1E-11 69.4 14.2 109 9-117 60-168 (297)
128 KOG0543|consensus 98.7 2.4E-07 5.3E-12 78.9 11.5 100 15-114 258-358 (397)
129 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 3E-07 6.5E-12 80.0 12.3 95 15-109 201-295 (395)
130 PRK10153 DNA-binding transcrip 98.7 4.3E-07 9.3E-12 82.1 12.8 108 8-116 370-487 (517)
131 COG2956 Predicted N-acetylgluc 98.6 3.2E-06 7E-11 70.1 16.3 103 12-114 105-246 (389)
132 TIGR02795 tol_pal_ybgF tol-pal 98.6 5.2E-07 1.1E-11 64.9 10.3 78 8-85 33-113 (119)
133 COG4235 Cytochrome c biogenesi 98.6 1.2E-06 2.5E-11 72.3 12.9 106 29-134 137-245 (287)
134 COG2956 Predicted N-acetylgluc 98.6 2.4E-06 5.3E-11 70.9 14.4 106 10-115 176-282 (389)
135 KOG2003|consensus 98.6 3.2E-06 7E-11 73.1 15.6 102 14-115 558-659 (840)
136 cd05804 StaR_like StaR_like; a 98.6 1.4E-06 3E-11 75.2 13.5 104 12-115 41-181 (355)
137 KOG1129|consensus 98.6 1.2E-07 2.6E-12 78.7 5.8 103 9-111 285-387 (478)
138 PF12895 Apc3: Anaphase-promot 98.6 1.2E-07 2.6E-12 64.5 4.9 61 13-74 24-84 (84)
139 PRK14720 transcript cleavage f 98.5 2E-06 4.3E-11 81.4 13.8 103 9-114 60-181 (906)
140 KOG1128|consensus 98.5 1.4E-06 3E-11 79.0 11.9 107 9-115 514-620 (777)
141 PF13525 YfiO: Outer membrane 98.5 7.3E-06 1.6E-10 65.4 14.5 109 7-115 35-174 (203)
142 KOG1174|consensus 98.5 2.7E-06 5.9E-11 72.7 12.4 77 7-83 327-403 (564)
143 PF09976 TPR_21: Tetratricopep 98.5 9.1E-06 2E-10 61.2 14.0 95 13-107 10-110 (145)
144 TIGR00540 hemY_coli hemY prote 98.5 9.2E-06 2E-10 71.8 16.1 95 17-111 121-216 (409)
145 KOG4162|consensus 98.5 4.3E-06 9.4E-11 76.2 13.5 107 15-121 651-759 (799)
146 COG4105 ComL DNA uptake lipopr 98.5 7.5E-05 1.6E-09 60.5 19.1 117 11-129 31-161 (254)
147 TIGR00540 hemY_coli hemY prote 98.4 1.7E-05 3.7E-10 70.1 16.9 117 13-129 83-200 (409)
148 KOG1129|consensus 98.4 1.2E-06 2.5E-11 72.9 8.7 96 19-115 228-323 (478)
149 PF12569 NARP1: NMDA receptor- 98.4 3.3E-05 7.2E-10 69.8 18.1 99 14-112 194-292 (517)
150 PRK10747 putative protoheme IX 98.4 1.5E-05 3.2E-10 70.3 15.5 92 21-112 125-217 (398)
151 PF12569 NARP1: NMDA receptor- 98.4 6.3E-05 1.4E-09 68.0 19.6 47 12-58 36-82 (517)
152 PRK10803 tol-pal system protei 98.4 3.3E-06 7.1E-11 69.9 10.4 78 7-84 173-253 (263)
153 PF13428 TPR_14: Tetratricopep 98.4 9.3E-07 2E-11 52.3 5.1 42 49-90 2-43 (44)
154 KOG1310|consensus 98.4 1.6E-06 3.4E-11 76.2 8.0 107 9-115 369-478 (758)
155 PF13431 TPR_17: Tetratricopep 98.3 5.2E-07 1.1E-11 50.2 3.1 32 71-102 2-33 (34)
156 KOG0495|consensus 98.3 6.2E-05 1.3E-09 68.0 17.4 119 16-134 653-771 (913)
157 KOG1127|consensus 98.3 1.2E-05 2.6E-10 75.3 13.5 99 15-113 563-661 (1238)
158 PRK10747 putative protoheme IX 98.3 4.6E-05 9.9E-10 67.2 16.8 116 13-129 83-200 (398)
159 PF13431 TPR_17: Tetratricopep 98.3 6.7E-07 1.4E-11 49.7 3.1 33 36-68 1-33 (34)
160 PRK10866 outer membrane biogen 98.3 3.5E-05 7.6E-10 63.2 14.6 109 7-115 62-208 (243)
161 PRK15331 chaperone protein Sic 98.3 3.7E-05 8E-10 58.3 12.4 92 44-135 33-124 (165)
162 KOG2376|consensus 98.3 9.4E-05 2E-09 66.0 16.7 119 17-138 82-234 (652)
163 PF00515 TPR_1: Tetratricopept 98.3 2.3E-06 5E-11 47.4 4.5 31 50-80 3-33 (34)
164 PF13428 TPR_14: Tetratricopep 98.2 3.1E-06 6.7E-11 50.0 5.1 42 15-56 2-43 (44)
165 COG4700 Uncharacterized protei 98.2 0.00029 6.3E-09 54.5 17.0 102 14-115 89-193 (251)
166 PF04733 Coatomer_E: Coatomer 98.2 2.1E-05 4.6E-10 66.2 11.6 119 13-131 130-250 (290)
167 PF04733 Coatomer_E: Coatomer 98.2 8.6E-06 1.9E-10 68.5 9.2 100 16-115 167-269 (290)
168 KOG4234|consensus 98.2 1.6E-05 3.5E-10 61.9 9.3 74 11-84 131-204 (271)
169 PF00515 TPR_1: Tetratricopept 98.2 4.9E-06 1.1E-10 46.1 4.6 34 82-115 1-34 (34)
170 KOG4648|consensus 98.2 9.3E-06 2E-10 68.1 8.0 72 51-122 100-171 (536)
171 PF06552 TOM20_plant: Plant sp 98.1 3.1E-05 6.7E-10 59.4 9.6 76 9-84 20-116 (186)
172 PF13512 TPR_18: Tetratricopep 98.1 3.2E-05 6.9E-10 57.4 9.4 79 6-84 39-135 (142)
173 COG1729 Uncharacterized protei 98.1 2.5E-05 5.5E-10 63.7 9.7 82 5-86 169-253 (262)
174 PF14938 SNAP: Soluble NSF att 98.1 5.6E-05 1.2E-09 63.5 11.9 105 12-116 112-230 (282)
175 PF07719 TPR_2: Tetratricopept 98.1 9.5E-06 2.1E-10 44.8 4.9 23 55-77 8-30 (34)
176 PF03704 BTAD: Bacterial trans 98.1 0.0002 4.3E-09 53.8 13.3 96 16-111 8-125 (146)
177 PF07719 TPR_2: Tetratricopept 98.1 1.3E-05 2.9E-10 44.2 5.0 34 14-47 1-34 (34)
178 PF12688 TPR_5: Tetratrico pep 98.1 0.00038 8.2E-09 50.6 13.8 67 49-115 2-71 (120)
179 KOG0495|consensus 98.0 0.0006 1.3E-08 61.9 17.3 122 10-131 681-802 (913)
180 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.0002 4.3E-09 62.6 13.4 105 21-128 176-280 (395)
181 KOG3785|consensus 97.9 5.8E-05 1.3E-09 63.7 8.8 103 13-115 56-184 (557)
182 COG3071 HemY Uncharacterized e 97.9 0.0075 1.6E-07 51.8 20.6 107 13-119 83-190 (400)
183 KOG1130|consensus 97.9 2.8E-05 6.1E-10 66.7 5.7 103 13-115 194-308 (639)
184 COG4785 NlpI Lipoprotein NlpI, 97.8 0.00079 1.7E-08 53.4 12.8 108 6-114 91-199 (297)
185 KOG4555|consensus 97.8 0.00075 1.6E-08 49.2 11.4 65 51-115 46-110 (175)
186 PF12968 DUF3856: Domain of Un 97.8 0.00062 1.3E-08 48.6 10.6 94 20-113 15-131 (144)
187 PF14938 SNAP: Soluble NSF att 97.8 0.0006 1.3E-08 57.2 12.1 103 12-115 33-148 (282)
188 KOG1130|consensus 97.8 0.00014 3.1E-09 62.6 8.2 103 13-115 234-348 (639)
189 KOG2796|consensus 97.7 0.0013 2.8E-08 53.7 13.2 107 9-115 207-319 (366)
190 KOG2053|consensus 97.7 0.0016 3.4E-08 61.0 15.4 132 22-154 17-148 (932)
191 KOG4642|consensus 97.7 0.0001 2.2E-09 59.0 6.2 66 53-118 15-80 (284)
192 KOG2396|consensus 97.7 0.0061 1.3E-07 53.9 17.3 91 33-123 90-181 (568)
193 PF13181 TPR_8: Tetratricopept 97.6 0.00013 2.9E-09 40.1 4.1 30 84-113 3-32 (34)
194 PF13181 TPR_8: Tetratricopept 97.6 0.00018 3.9E-09 39.6 4.5 33 49-81 2-34 (34)
195 KOG1915|consensus 97.6 0.042 9.2E-07 48.6 20.6 103 13-115 72-174 (677)
196 COG0457 NrfG FOG: TPR repeat [ 97.6 0.0055 1.2E-07 47.5 14.6 100 14-113 59-161 (291)
197 KOG2376|consensus 97.5 0.0044 9.6E-08 55.7 14.7 97 15-114 13-142 (652)
198 PF15015 NYD-SP12_N: Spermatog 97.5 0.0012 2.5E-08 57.1 10.7 129 16-149 178-324 (569)
199 COG3071 HemY Uncharacterized e 97.5 0.0014 3E-08 56.1 11.1 101 13-116 262-362 (400)
200 KOG4340|consensus 97.5 0.0018 4E-08 53.7 11.3 105 11-115 41-177 (459)
201 PF04781 DUF627: Protein of un 97.5 0.0021 4.5E-08 45.5 10.0 92 20-111 2-107 (111)
202 KOG2796|consensus 97.5 0.0027 5.9E-08 51.8 11.9 131 16-146 179-316 (366)
203 KOG1586|consensus 97.5 0.013 2.9E-07 47.0 15.3 104 9-113 29-145 (288)
204 PF10300 DUF3808: Protein of u 97.5 0.0014 3.1E-08 58.9 11.4 103 10-113 263-378 (468)
205 COG3118 Thioredoxin domain-con 97.5 0.0066 1.4E-07 50.3 14.1 100 16-115 136-269 (304)
206 KOG4340|consensus 97.5 0.0011 2.3E-08 55.1 9.4 86 23-108 19-104 (459)
207 KOG3785|consensus 97.5 0.0079 1.7E-07 51.2 14.4 87 22-108 30-117 (557)
208 COG0457 NrfG FOG: TPR repeat [ 97.4 0.0049 1.1E-07 47.8 12.8 97 18-114 133-234 (291)
209 KOG0546|consensus 97.4 0.00051 1.1E-08 58.0 6.4 116 15-135 223-357 (372)
210 KOG0545|consensus 97.4 0.0043 9.3E-08 50.2 11.3 71 48-118 178-266 (329)
211 smart00504 Ubox Modified RING 97.3 0.00014 3E-09 46.4 2.2 29 215-243 35-63 (63)
212 KOG0376|consensus 97.3 0.00025 5.3E-09 62.1 4.0 87 8-94 32-118 (476)
213 KOG0551|consensus 97.3 0.01 2.2E-07 50.0 13.1 73 8-80 113-185 (390)
214 PLN03081 pentatricopeptide (PP 97.3 0.0022 4.8E-08 60.7 10.6 105 14-120 426-532 (697)
215 PRK10941 hypothetical protein; 97.3 0.0048 1E-07 51.3 11.0 69 49-117 182-250 (269)
216 PF13176 TPR_7: Tetratricopept 97.3 0.00072 1.6E-08 37.8 4.3 31 84-114 1-31 (36)
217 PRK10941 hypothetical protein; 97.2 0.0049 1.1E-07 51.2 10.7 77 15-91 182-258 (269)
218 PF05843 Suf: Suppressor of fo 97.2 0.011 2.4E-07 49.6 13.1 101 15-115 2-103 (280)
219 PF13174 TPR_6: Tetratricopept 97.2 0.00076 1.6E-08 36.6 4.2 27 86-112 4-30 (33)
220 COG4105 ComL DNA uptake lipopr 97.2 0.038 8.2E-07 45.1 15.2 109 7-115 64-200 (254)
221 PF13174 TPR_6: Tetratricopept 97.2 0.00077 1.7E-08 36.5 4.0 33 49-81 1-33 (33)
222 PF09613 HrpB1_HrpK: Bacterial 97.2 0.011 2.4E-07 44.8 11.3 87 12-98 8-94 (160)
223 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.0024 5.2E-08 39.1 6.4 35 51-85 4-38 (53)
224 KOG3824|consensus 97.2 0.0019 4.1E-08 53.8 7.7 79 11-89 113-191 (472)
225 KOG2471|consensus 97.2 0.0015 3.2E-08 57.5 7.4 115 6-120 232-373 (696)
226 COG4700 Uncharacterized protei 97.2 0.047 1E-06 42.5 14.5 100 10-110 120-221 (251)
227 PF03704 BTAD: Bacterial trans 97.1 0.0048 1E-07 46.2 9.1 62 15-76 63-124 (146)
228 COG2976 Uncharacterized protei 97.1 0.01 2.2E-07 46.3 10.7 99 14-114 89-191 (207)
229 KOG3081|consensus 97.1 0.029 6.2E-07 46.0 13.5 117 15-131 109-256 (299)
230 PLN03218 maturation of RBCL 1; 97.1 0.031 6.7E-07 55.2 16.3 94 16-110 581-677 (1060)
231 smart00028 TPR Tetratricopepti 97.1 0.0013 2.8E-08 34.5 4.1 30 50-79 3-32 (34)
232 PLN03081 pentatricopeptide (PP 97.1 0.014 3.1E-07 55.3 13.6 96 13-108 390-488 (697)
233 PLN03218 maturation of RBCL 1; 97.0 0.039 8.5E-07 54.5 16.6 98 14-112 507-609 (1060)
234 KOG3081|consensus 97.0 0.016 3.5E-07 47.4 11.5 100 16-115 171-275 (299)
235 PF13176 TPR_7: Tetratricopept 97.0 0.0014 3.1E-08 36.6 4.0 25 17-41 2-26 (36)
236 PF04184 ST7: ST7 protein; In 97.0 0.013 2.8E-07 51.9 11.8 95 18-114 172-291 (539)
237 KOG2471|consensus 97.0 0.0012 2.6E-08 58.1 5.0 82 14-95 283-382 (696)
238 PF10300 DUF3808: Protein of u 97.0 0.038 8.3E-07 49.8 14.7 89 26-114 245-337 (468)
239 PLN03077 Protein ECB2; Provisi 97.0 0.013 2.8E-07 56.9 12.5 102 16-119 591-694 (857)
240 KOG4814|consensus 96.9 0.016 3.4E-07 52.8 11.4 96 16-111 356-457 (872)
241 PRK04841 transcriptional regul 96.9 0.018 3.8E-07 56.2 12.9 101 14-114 531-644 (903)
242 KOG1070|consensus 96.9 0.089 1.9E-06 52.1 16.8 107 9-115 1453-1597(1710)
243 PF14561 TPR_20: Tetratricopep 96.9 0.021 4.6E-07 39.1 9.5 48 34-81 8-55 (90)
244 KOG4507|consensus 96.8 0.0046 9.9E-08 55.7 7.5 95 22-116 615-710 (886)
245 PRK04841 transcriptional regul 96.8 0.022 4.8E-07 55.5 12.9 101 14-114 452-563 (903)
246 PF14853 Fis1_TPR_C: Fis1 C-te 96.8 0.011 2.3E-07 36.3 6.8 34 83-116 2-35 (53)
247 KOG1586|consensus 96.8 0.22 4.8E-06 40.2 18.0 103 13-115 72-187 (288)
248 PF04184 ST7: ST7 protein; In 96.8 0.029 6.3E-07 49.8 11.7 99 18-116 263-380 (539)
249 smart00028 TPR Tetratricopepti 96.7 0.0024 5.3E-08 33.4 3.4 32 83-114 2-33 (34)
250 PF05843 Suf: Suppressor of fo 96.7 0.056 1.2E-06 45.3 12.8 104 12-115 33-140 (280)
251 KOG3824|consensus 96.7 0.028 6.2E-07 47.0 10.5 71 50-120 118-188 (472)
252 KOG1941|consensus 96.7 0.36 7.8E-06 41.6 17.3 102 14-115 122-239 (518)
253 KOG2053|consensus 96.6 0.057 1.2E-06 51.0 13.3 107 9-116 38-144 (932)
254 KOG1585|consensus 96.6 0.063 1.4E-06 43.6 11.8 104 12-115 29-143 (308)
255 PF10602 RPN7: 26S proteasome 96.6 0.041 8.9E-07 42.8 10.4 101 12-112 34-143 (177)
256 COG3914 Spy Predicted O-linked 96.6 0.058 1.3E-06 48.8 12.4 116 9-125 63-185 (620)
257 PLN03077 Protein ECB2; Provisi 96.5 0.063 1.4E-06 52.2 13.5 102 11-114 551-656 (857)
258 TIGR02561 HrpB1_HrpK type III 96.5 0.054 1.2E-06 40.5 10.0 85 14-98 10-94 (153)
259 KOG1070|consensus 96.5 0.066 1.4E-06 53.0 13.1 114 15-128 1531-1646(1710)
260 KOG2610|consensus 96.5 0.022 4.8E-07 48.2 8.7 98 10-107 133-234 (491)
261 KOG2610|consensus 96.4 0.064 1.4E-06 45.5 10.9 97 20-116 109-209 (491)
262 PF13281 DUF4071: Domain of un 96.3 0.11 2.4E-06 45.1 12.4 86 11-97 176-274 (374)
263 PF09986 DUF2225: Uncharacteri 96.3 0.091 2E-06 42.2 11.0 92 24-115 87-198 (214)
264 PF14561 TPR_20: Tetratricopep 96.2 0.041 9E-07 37.7 7.7 50 67-116 7-56 (90)
265 COG4976 Predicted methyltransf 96.2 0.0094 2E-07 47.7 4.9 61 22-82 3-63 (287)
266 KOG1308|consensus 96.1 0.0031 6.7E-08 53.2 2.1 73 6-78 140-212 (377)
267 COG4976 Predicted methyltransf 96.1 0.013 2.8E-07 47.0 5.2 61 56-116 3-63 (287)
268 KOG4507|consensus 96.0 0.23 5E-06 45.2 13.1 103 15-117 213-318 (886)
269 KOG3364|consensus 95.9 0.32 6.9E-06 35.9 11.3 69 47-115 31-104 (149)
270 KOG1915|consensus 95.9 0.14 3E-06 45.5 11.1 98 13-111 403-500 (677)
271 COG2912 Uncharacterized conser 95.9 0.13 2.8E-06 42.5 10.4 68 49-116 182-249 (269)
272 PF13374 TPR_10: Tetratricopep 95.8 0.022 4.9E-07 32.3 4.3 27 50-76 4-30 (42)
273 KOG4151|consensus 95.7 0.048 1E-06 50.8 8.0 103 13-115 52-160 (748)
274 COG2912 Uncharacterized conser 95.7 0.093 2E-06 43.3 8.9 75 17-91 184-258 (269)
275 PF02259 FAT: FAT domain; Int 95.7 0.23 5E-06 42.6 11.8 107 11-117 143-293 (352)
276 COG5191 Uncharacterized conser 95.6 0.053 1.2E-06 45.5 7.2 86 38-123 97-183 (435)
277 PF04910 Tcf25: Transcriptiona 95.5 0.32 6.8E-06 42.4 11.9 95 41-135 33-157 (360)
278 PF13374 TPR_10: Tetratricopep 95.5 0.042 9.1E-07 31.1 4.5 30 14-43 2-31 (42)
279 PF07079 DUF1347: Protein of u 95.5 0.82 1.8E-05 40.5 14.0 53 55-108 469-521 (549)
280 KOG1941|consensus 95.5 0.1 2.2E-06 44.8 8.4 104 12-115 160-279 (518)
281 COG3118 Thioredoxin domain-con 95.3 0.3 6.4E-06 40.8 10.4 57 51-107 137-193 (304)
282 PF12862 Apc5: Anaphase-promot 95.3 0.12 2.6E-06 35.7 7.1 34 83-116 42-75 (94)
283 KOG2396|consensus 95.2 0.17 3.7E-06 45.1 9.2 75 12-86 103-178 (568)
284 KOG3364|consensus 95.1 0.5 1.1E-05 34.9 9.9 76 13-88 31-111 (149)
285 PF13281 DUF4071: Domain of un 94.9 0.5 1.1E-05 41.1 11.3 105 11-115 138-259 (374)
286 PF12862 Apc5: Anaphase-promot 94.9 0.26 5.6E-06 34.0 7.9 57 23-79 7-72 (94)
287 PF02259 FAT: FAT domain; Int 94.8 2.3 5E-05 36.3 17.1 67 44-110 142-212 (352)
288 COG5191 Uncharacterized conser 94.7 0.07 1.5E-06 44.8 5.3 77 11-87 104-181 (435)
289 PF10579 Rapsyn_N: Rapsyn N-te 94.6 0.64 1.4E-05 30.8 8.5 62 14-75 6-70 (80)
290 PF09613 HrpB1_HrpK: Bacterial 94.3 1.8 3.8E-05 33.0 11.6 111 49-161 11-124 (160)
291 PF10516 SHNi-TPR: SHNi-TPR; 94.2 0.098 2.1E-06 29.5 3.6 27 85-111 4-30 (38)
292 KOG3617|consensus 94.2 0.64 1.4E-05 44.2 10.7 96 15-110 859-995 (1416)
293 KOG1585|consensus 94.1 2.7 5.8E-05 34.4 14.7 97 15-111 72-179 (308)
294 COG3898 Uncharacterized membra 94.1 1.1 2.3E-05 39.1 11.1 102 12-114 186-295 (531)
295 KOG2300|consensus 94.1 1.5 3.3E-05 39.2 12.3 99 11-112 364-475 (629)
296 PF07720 TPR_3: Tetratricopept 94.0 0.24 5.1E-06 27.6 4.9 31 16-46 3-35 (36)
297 PF10373 EST1_DNA_bind: Est1 D 94.0 0.33 7.2E-06 40.2 8.1 62 33-94 1-62 (278)
298 PF08631 SPO22: Meiosis protei 93.9 2.1 4.5E-05 35.8 12.6 80 24-103 3-105 (278)
299 KOG0530|consensus 93.8 3.3 7.2E-05 34.2 13.7 95 25-119 54-150 (318)
300 PF08424 NRDE-2: NRDE-2, neces 93.7 3.7 7.9E-05 35.2 14.1 107 8-114 13-134 (321)
301 PF10516 SHNi-TPR: SHNi-TPR; 93.7 0.18 3.9E-06 28.5 4.0 29 49-77 2-30 (38)
302 COG0790 FOG: TPR repeat, SEL1 93.2 2.9 6.2E-05 34.9 12.5 97 14-112 109-221 (292)
303 COG3629 DnrI DNA-binding trans 93.1 0.75 1.6E-05 38.4 8.6 64 48-111 153-216 (280)
304 PF07721 TPR_4: Tetratricopept 93.1 0.14 3.1E-06 26.0 2.8 22 84-105 3-24 (26)
305 PF07720 TPR_3: Tetratricopept 93.0 0.41 9E-06 26.6 4.8 21 84-104 3-23 (36)
306 KOG0530|consensus 92.9 2.6 5.6E-05 34.9 11.0 107 10-116 73-181 (318)
307 KOG3807|consensus 92.9 5.5 0.00012 34.2 13.3 94 18-113 188-306 (556)
308 PF08424 NRDE-2: NRDE-2, neces 92.8 3.3 7.1E-05 35.5 12.4 85 34-118 5-101 (321)
309 COG3947 Response regulator con 92.6 0.59 1.3E-05 39.1 7.1 60 50-109 281-340 (361)
310 KOG0686|consensus 92.6 0.95 2.1E-05 39.5 8.6 97 14-110 150-257 (466)
311 PF07721 TPR_4: Tetratricopept 92.6 0.18 3.9E-06 25.7 2.7 23 50-72 3-25 (26)
312 PF08631 SPO22: Meiosis protei 92.5 3.5 7.5E-05 34.5 11.9 100 13-112 34-151 (278)
313 PF10579 Rapsyn_N: Rapsyn N-te 92.2 2.1 4.4E-05 28.5 8.0 62 51-112 9-73 (80)
314 KOG2581|consensus 92.1 3.5 7.6E-05 36.2 11.4 102 14-115 169-280 (493)
315 PF09986 DUF2225: Uncharacteri 92.1 2.3 4.9E-05 34.2 9.9 70 12-81 116-198 (214)
316 COG3629 DnrI DNA-binding trans 91.8 1.4 3E-05 36.8 8.5 64 14-77 153-216 (280)
317 PF14863 Alkyl_sulf_dimr: Alky 91.7 1.1 2.3E-05 33.5 7.1 46 17-62 73-118 (141)
318 KOG1550|consensus 91.7 2.6 5.6E-05 39.0 11.1 94 16-113 290-395 (552)
319 KOG1839|consensus 91.7 3.5 7.5E-05 41.2 12.2 106 8-113 967-1088(1236)
320 PF12968 DUF3856: Domain of Un 91.6 1 2.2E-05 32.5 6.4 65 13-77 54-129 (144)
321 COG3898 Uncharacterized membra 91.6 4.4 9.6E-05 35.5 11.4 97 12-110 118-216 (531)
322 KOG3617|consensus 91.6 10 0.00022 36.6 14.4 64 13-76 911-995 (1416)
323 KOG2047|consensus 91.3 13 0.00028 34.9 17.0 100 14-113 387-508 (835)
324 KOG2422|consensus 91.2 9.1 0.0002 35.2 13.4 111 27-137 251-398 (665)
325 KOG2042|consensus 91.2 0.19 4.2E-06 48.3 3.2 34 214-247 904-937 (943)
326 PRK15180 Vi polysaccharide bio 91.0 5.5 0.00012 35.9 11.6 98 18-115 293-424 (831)
327 PRK15180 Vi polysaccharide bio 90.8 0.97 2.1E-05 40.5 6.9 59 17-75 326-384 (831)
328 KOG1550|consensus 90.7 2.8 6E-05 38.8 10.3 99 13-113 243-359 (552)
329 TIGR02561 HrpB1_HrpK type III 90.6 3.4 7.5E-05 31.1 8.7 55 11-65 41-95 (153)
330 PF04781 DUF627: Protein of un 90.5 4.8 0.0001 28.6 9.6 62 54-115 2-77 (111)
331 cd02682 MIT_AAA_Arch MIT: doma 90.4 2.3 4.9E-05 28.0 6.8 31 13-43 5-35 (75)
332 COG0790 FOG: TPR repeat, SEL1 90.0 10 0.00022 31.6 12.8 94 16-114 150-269 (292)
333 KOG0529|consensus 89.9 3 6.4E-05 36.6 9.0 90 28-117 89-184 (421)
334 PF10373 EST1_DNA_bind: Est1 D 89.8 0.87 1.9E-05 37.7 5.7 45 67-111 1-45 (278)
335 COG2976 Uncharacterized protei 89.3 9.3 0.0002 30.2 11.5 59 51-109 92-153 (207)
336 KOG2422|consensus 89.3 6.8 0.00015 36.0 11.0 78 7-84 277-379 (665)
337 KOG2300|consensus 89.1 17 0.00037 32.9 14.4 93 12-104 44-149 (629)
338 KOG1914|consensus 89.1 3 6.5E-05 37.9 8.6 104 7-112 13-117 (656)
339 PF04053 Coatomer_WDAD: Coatom 88.8 4.2 9.1E-05 36.5 9.6 83 13-108 346-428 (443)
340 COG3914 Spy Predicted O-linked 88.6 20 0.00044 33.1 14.0 94 28-121 45-141 (620)
341 KOG2047|consensus 88.3 23 0.00049 33.3 15.7 101 15-115 478-583 (835)
342 KOG4814|consensus 88.2 3.8 8.3E-05 38.1 8.8 68 49-116 355-428 (872)
343 PRK13184 pknD serine/threonine 88.2 11 0.00023 37.3 12.4 97 20-117 481-587 (932)
344 PF10255 Paf67: RNA polymerase 88.1 1.2 2.5E-05 39.4 5.4 60 51-111 125-193 (404)
345 KOG1914|consensus 88.0 11 0.00024 34.4 11.4 74 38-112 10-83 (656)
346 PF11207 DUF2989: Protein of u 87.8 4.3 9.3E-05 32.2 7.9 71 31-102 123-198 (203)
347 PF10255 Paf67: RNA polymerase 87.7 6.2 0.00013 34.9 9.7 95 19-114 127-231 (404)
348 PF11817 Foie-gras_1: Foie gra 87.7 3.4 7.3E-05 33.9 7.7 83 27-109 151-245 (247)
349 PF07079 DUF1347: Protein of u 87.5 21 0.00046 32.1 16.3 97 15-111 7-108 (549)
350 PF15015 NYD-SP12_N: Spermatog 87.3 1.8 3.9E-05 38.1 6.0 61 17-77 231-291 (569)
351 COG4455 ImpE Protein of avirul 87.3 8.3 0.00018 31.2 9.2 58 58-115 11-68 (273)
352 smart00386 HAT HAT (Half-A-TPR 87.0 2 4.4E-05 22.2 4.3 29 28-56 1-29 (33)
353 KOG0529|consensus 86.9 17 0.00036 32.1 11.6 94 25-118 39-147 (421)
354 PF11207 DUF2989: Protein of u 86.9 4.2 9.1E-05 32.2 7.4 35 80-115 139-173 (203)
355 COG4455 ImpE Protein of avirul 86.6 16 0.00034 29.7 11.9 63 21-83 8-70 (273)
356 PF04910 Tcf25: Transcriptiona 86.5 21 0.00046 31.1 17.4 103 8-110 34-167 (360)
357 PF10602 RPN7: 26S proteasome 86.5 7.3 0.00016 30.2 8.6 67 48-114 36-105 (177)
358 KOG1839|consensus 86.1 2.7 5.8E-05 41.9 7.1 100 12-111 930-1044(1236)
359 TIGR03504 FimV_Cterm FimV C-te 86.0 1.7 3.8E-05 25.3 3.7 25 86-110 3-27 (44)
360 KOG0546|consensus 85.8 0.75 1.6E-05 39.4 3.0 78 14-91 275-352 (372)
361 KOG2041|consensus 85.7 4.1 9E-05 38.3 7.7 84 12-107 794-877 (1189)
362 PF11817 Foie-gras_1: Foie gra 85.6 10 0.00022 31.1 9.5 52 83-134 179-231 (247)
363 COG3947 Response regulator con 85.4 4.4 9.5E-05 34.1 7.1 59 16-74 281-339 (361)
364 TIGR03504 FimV_Cterm FimV C-te 85.4 1.7 3.7E-05 25.4 3.5 26 52-77 3-28 (44)
365 cd02682 MIT_AAA_Arch MIT: doma 85.2 8.1 0.00018 25.4 7.0 16 100-115 31-46 (75)
366 PF14863 Alkyl_sulf_dimr: Alky 84.7 4.5 9.7E-05 30.2 6.4 50 49-98 71-120 (141)
367 PF04212 MIT: MIT (microtubule 83.7 2.6 5.7E-05 27.0 4.3 30 14-43 5-34 (69)
368 COG5113 UFD2 Ubiquitin fusion 83.5 1.2 2.5E-05 41.1 3.2 34 214-247 888-921 (929)
369 PF12123 Amidase02_C: N-acetyl 83.4 0.59 1.3E-05 27.4 0.9 28 225-253 18-45 (45)
370 KOG0985|consensus 83.4 16 0.00034 36.3 10.6 58 12-74 1102-1159(1666)
371 PF06416 DUF1076: Protein of u 83.3 0.45 9.7E-06 33.5 0.5 19 214-232 79-97 (113)
372 KOG1310|consensus 82.2 4.5 9.7E-05 36.8 6.3 75 8-82 402-479 (758)
373 PF10952 DUF2753: Protein of u 81.0 9.1 0.0002 27.8 6.4 28 16-43 3-30 (140)
374 PF10345 Cohesin_load: Cohesin 80.7 51 0.0011 31.0 13.8 105 8-113 53-170 (608)
375 KOG0289|consensus 80.3 0.82 1.8E-05 40.0 1.1 31 201-232 20-52 (506)
376 PF10345 Cohesin_load: Cohesin 80.2 29 0.00064 32.5 11.4 95 14-108 301-430 (608)
377 cd02681 MIT_calpain7_1 MIT: do 80.0 11 0.00024 24.9 6.1 17 95-111 19-35 (76)
378 PF12854 PPR_1: PPR repeat 79.9 5.4 0.00012 21.5 4.0 25 48-72 7-31 (34)
379 PF09205 DUF1955: Domain of un 79.1 16 0.00036 27.1 7.3 81 27-112 69-150 (161)
380 cd02681 MIT_calpain7_1 MIT: do 78.6 5.1 0.00011 26.4 4.2 30 14-43 6-35 (76)
381 PHA02537 M terminase endonucle 78.5 9.4 0.0002 31.0 6.6 91 25-115 94-211 (230)
382 cd02680 MIT_calpain7_2 MIT: do 78.5 16 0.00035 24.0 8.1 20 94-113 18-37 (75)
383 PF09670 Cas_Cas02710: CRISPR- 78.3 47 0.001 29.2 12.8 62 15-76 132-197 (379)
384 smart00386 HAT HAT (Half-A-TPR 77.8 6.6 0.00014 20.1 4.0 28 62-89 1-28 (33)
385 cd02677 MIT_SNX15 MIT: domain 77.0 12 0.00027 24.5 5.7 16 96-111 20-35 (75)
386 cd02678 MIT_VPS4 MIT: domain c 76.1 10 0.00023 24.7 5.3 31 13-43 5-35 (75)
387 PF12854 PPR_1: PPR repeat 76.0 8 0.00017 20.8 4.0 27 81-107 6-32 (34)
388 COG4649 Uncharacterized protei 75.2 38 0.00081 26.5 8.8 109 14-123 94-207 (221)
389 smart00745 MIT Microtubule Int 75.2 12 0.00026 24.4 5.4 31 13-43 7-37 (77)
390 PF11846 DUF3366: Domain of un 74.7 15 0.00033 28.6 6.9 50 64-114 127-176 (193)
391 KOG0985|consensus 74.1 40 0.00086 33.7 10.2 90 20-114 1054-1165(1666)
392 cd02683 MIT_1 MIT: domain cont 73.9 23 0.00049 23.4 7.6 32 12-43 4-35 (77)
393 KOG1258|consensus 73.4 79 0.0017 29.4 13.1 105 11-115 294-399 (577)
394 PRK13184 pknD serine/threonine 71.8 63 0.0014 32.1 11.3 102 12-116 510-625 (932)
395 KOG3783|consensus 71.2 58 0.0013 29.9 10.1 66 50-115 451-524 (546)
396 cd02680 MIT_calpain7_2 MIT: do 71.1 7.7 0.00017 25.5 3.6 29 15-43 7-35 (75)
397 PF09797 NatB_MDM20: N-acetylt 71.0 70 0.0015 27.8 11.6 46 28-73 197-242 (365)
398 cd02656 MIT MIT: domain contai 70.9 17 0.00036 23.6 5.3 30 14-43 6-35 (75)
399 cd02684 MIT_2 MIT: domain cont 70.7 27 0.00058 22.9 6.2 18 94-111 18-35 (75)
400 COG4941 Predicted RNA polymera 70.7 27 0.00058 30.2 7.5 86 29-115 311-398 (415)
401 PF11846 DUF3366: Domain of un 70.6 21 0.00045 27.9 6.7 48 31-79 128-175 (193)
402 KOG4563|consensus 70.2 13 0.00028 32.2 5.6 60 12-71 39-106 (400)
403 PF06957 COPI_C: Coatomer (COP 70.2 28 0.00062 31.0 8.0 100 16-115 206-333 (422)
404 PF07219 HemY_N: HemY protein 69.2 26 0.00057 24.6 6.3 44 53-96 64-107 (108)
405 cd02684 MIT_2 MIT: domain cont 68.1 11 0.00024 24.7 3.9 29 14-42 6-34 (75)
406 COG4649 Uncharacterized protei 68.1 56 0.0012 25.6 12.4 94 13-106 57-156 (221)
407 PF10952 DUF2753: Protein of u 68.1 34 0.00074 25.0 6.6 81 51-131 4-103 (140)
408 KOG0276|consensus 67.7 51 0.0011 30.9 9.1 80 25-109 648-748 (794)
409 KOG3783|consensus 66.9 48 0.001 30.4 8.7 73 10-85 263-339 (546)
410 PF01535 PPR: PPR repeat; Int 65.6 11 0.00024 19.0 3.0 20 54-73 6-25 (31)
411 COG2015 Alkyl sulfatase and re 64.3 21 0.00046 32.3 5.9 53 15-67 453-505 (655)
412 KOG2417|consensus 64.3 75 0.0016 27.6 8.9 10 214-223 320-329 (462)
413 PF02064 MAS20: MAS20 protein 64.2 18 0.0004 26.2 4.7 29 19-47 68-96 (121)
414 COG2909 MalT ATP-dependent tra 64.0 1.5E+02 0.0033 29.1 17.6 102 14-115 415-530 (894)
415 COG5107 RNA14 Pre-mRNA 3'-end 63.9 45 0.00097 30.1 7.8 69 8-76 36-104 (660)
416 KOG0890|consensus 63.0 1.5E+02 0.0032 32.5 12.3 105 9-115 1665-1788(2382)
417 PF13226 DUF4034: Domain of un 62.5 72 0.0016 26.8 8.5 66 32-97 61-148 (277)
418 PRK11619 lytic murein transgly 61.7 75 0.0016 30.2 9.5 57 54-110 318-374 (644)
419 cd02677 MIT_SNX15 MIT: domain 61.0 44 0.00096 21.9 6.6 30 14-43 6-35 (75)
420 PF09205 DUF1955: Domain of un 60.8 68 0.0015 23.9 9.5 62 16-77 87-149 (161)
421 cd00280 TRFH Telomeric Repeat 60.7 23 0.0005 27.8 4.9 47 56-103 119-165 (200)
422 PF07219 HemY_N: HemY protein 60.6 56 0.0012 22.9 6.7 27 86-112 63-89 (108)
423 PF13041 PPR_2: PPR repeat fam 60.3 32 0.00069 20.0 6.0 26 17-42 6-31 (50)
424 PF04190 DUF410: Protein of un 59.0 1E+02 0.0022 25.5 11.8 95 13-107 9-115 (260)
425 KOG3616|consensus 59.0 29 0.00063 33.3 6.1 79 17-105 768-847 (1636)
426 KOG2114|consensus 58.8 1.9E+02 0.004 28.4 16.6 88 11-104 365-453 (933)
427 PF01239 PPTA: Protein prenylt 58.5 25 0.00054 18.2 4.6 24 69-92 4-27 (31)
428 PRK15490 Vi polysaccharide bio 58.3 95 0.0021 29.0 9.2 77 28-106 22-98 (578)
429 TIGR00756 PPR pentatricopeptid 58.1 24 0.00051 18.0 3.6 22 53-74 5-26 (35)
430 cd02679 MIT_spastin MIT: domai 58.1 21 0.00045 23.7 3.8 16 61-76 21-36 (79)
431 smart00299 CLH Clathrin heavy 56.5 74 0.0016 23.0 8.9 49 23-72 16-64 (140)
432 KOG3389|consensus 56.0 8.9 0.00019 28.4 1.9 19 234-252 131-149 (178)
433 PF12739 TRAPPC-Trs85: ER-Golg 55.8 1.5E+02 0.0033 26.4 10.8 98 14-111 208-329 (414)
434 KOG2581|consensus 54.6 52 0.0011 29.2 6.6 69 12-80 207-279 (493)
435 PF08238 Sel1: Sel1 repeat; I 54.6 33 0.00071 18.4 4.1 13 98-110 24-36 (39)
436 KOG3807|consensus 54.0 1.5E+02 0.0032 25.8 10.1 53 19-71 280-334 (556)
437 KOG2561|consensus 53.9 1.1E+02 0.0023 27.6 8.4 98 14-111 163-296 (568)
438 PF02064 MAS20: MAS20 protein 53.7 48 0.001 24.0 5.4 30 86-115 67-96 (121)
439 PF13812 PPR_3: Pentatricopept 53.6 30 0.00066 17.7 4.0 24 51-74 4-27 (34)
440 PF05205 COMPASS-Shg1: COMPASS 51.7 4 8.6E-05 28.8 -0.5 42 209-250 5-51 (106)
441 COG2909 MalT ATP-dependent tra 51.5 2.5E+02 0.0054 27.7 15.5 99 11-109 455-566 (894)
442 TIGR02710 CRISPR-associated pr 50.9 1.8E+02 0.0038 25.7 11.9 65 9-73 123-196 (380)
443 PF05053 Menin: Menin; InterP 50.6 1.5E+02 0.0032 27.6 9.0 69 28-111 274-347 (618)
444 KOG4056|consensus 50.0 44 0.00096 24.7 4.7 33 19-51 86-118 (143)
445 PF04053 Coatomer_WDAD: Coatom 49.8 2E+02 0.0043 26.0 14.8 33 79-111 344-376 (443)
446 smart00671 SEL1 Sel1-like repe 49.5 38 0.00083 17.7 4.0 26 17-42 4-33 (36)
447 KOG4014|consensus 48.9 1.3E+02 0.0029 23.8 8.1 99 12-113 32-143 (248)
448 PF04190 DUF410: Protein of un 48.6 1.5E+02 0.0034 24.4 13.4 65 47-111 89-170 (260)
449 PF12583 TPPII_N: Tripeptidyl 48.6 91 0.002 23.0 6.0 34 20-53 82-115 (139)
450 KOG2041|consensus 48.4 71 0.0015 30.6 6.7 26 49-74 797-822 (1189)
451 KOG4151|consensus 48.3 78 0.0017 30.4 7.1 78 9-86 86-165 (748)
452 COG5600 Transcription-associat 47.4 81 0.0017 27.7 6.6 63 52-114 181-252 (413)
453 KOG2758|consensus 47.4 93 0.002 26.8 6.8 64 11-74 126-193 (432)
454 COG4575 ElaB Uncharacterized c 46.8 99 0.0022 21.7 8.0 15 235-249 70-84 (104)
455 PRK15490 Vi polysaccharide bio 45.5 1.6E+02 0.0035 27.6 8.6 64 7-72 35-98 (578)
456 cd02679 MIT_spastin MIT: domai 45.1 44 0.00096 22.2 3.8 34 63-111 4-37 (79)
457 PF09797 NatB_MDM20: N-acetylt 45.1 2.1E+02 0.0045 24.9 9.8 47 61-107 196-242 (365)
458 PF05053 Menin: Menin; InterP 44.6 1.3E+02 0.0028 28.0 7.7 64 12-75 275-345 (618)
459 TIGR00985 3a0801s04tom mitocho 44.4 59 0.0013 24.5 4.8 30 19-48 95-125 (148)
460 KOG0276|consensus 44.3 77 0.0017 29.8 6.3 53 55-112 644-696 (794)
461 KOG0128|consensus 43.9 1.4E+02 0.003 29.1 8.0 93 18-110 83-178 (881)
462 KOG4563|consensus 43.9 55 0.0012 28.5 5.1 55 51-105 44-106 (400)
463 PF12753 Nro1: Nuclear pore co 43.7 58 0.0012 28.8 5.2 47 64-112 334-392 (404)
464 PF12753 Nro1: Nuclear pore co 43.4 41 0.0009 29.6 4.3 13 98-110 334-346 (404)
465 KOG1464|consensus 42.8 89 0.0019 26.3 5.9 53 59-111 38-94 (440)
466 cd02683 MIT_1 MIT: domain cont 41.1 1E+02 0.0022 20.2 8.7 17 94-110 18-34 (77)
467 PF04212 MIT: MIT (microtubule 41.0 91 0.002 19.6 7.9 19 93-111 16-34 (69)
468 cd00280 TRFH Telomeric Repeat 39.9 88 0.0019 24.6 5.2 30 88-118 117-146 (200)
469 PF15469 Sec5: Exocyst complex 38.9 1.8E+02 0.0039 22.4 7.9 19 97-115 154-172 (182)
470 KOG0292|consensus 38.7 4.1E+02 0.0089 26.5 10.4 101 15-115 992-1117(1202)
471 KOG3677|consensus 38.5 55 0.0012 29.2 4.3 87 4-91 263-352 (525)
472 PF04840 Vps16_C: Vps16, C-ter 38.3 2.5E+02 0.0055 24.0 8.4 80 20-107 183-262 (319)
473 smart00250 PLEC Plectin repeat 38.1 14 0.0003 20.6 0.5 14 214-227 11-24 (38)
474 KOG3616|consensus 37.8 4E+02 0.0087 26.1 12.4 94 16-109 663-792 (1636)
475 TIGR00178 monomer_idh isocitra 37.6 2.8E+02 0.0061 26.1 8.7 24 214-243 396-420 (741)
476 COG5091 SGT1 Suppressor of G2 37.5 1.5E+02 0.0033 24.9 6.5 93 23-115 4-112 (368)
477 COG1747 Uncharacterized N-term 36.8 3.5E+02 0.0076 25.2 13.9 63 13-77 98-160 (711)
478 PF13226 DUF4034: Domain of un 36.2 2.6E+02 0.0057 23.5 8.9 96 20-116 6-133 (277)
479 KOG1258|consensus 36.1 3.7E+02 0.008 25.2 14.8 85 31-115 62-147 (577)
480 COG4941 Predicted RNA polymera 36.0 2.6E+02 0.0056 24.4 7.7 44 47-90 364-407 (415)
481 PF09256 BaffR-Tall_bind: BAFF 35.9 12 0.00027 19.7 0.0 9 216-224 9-17 (31)
482 PF11349 DUF3151: Protein of u 35.8 1.7E+02 0.0037 21.3 7.8 76 39-114 27-124 (129)
483 cd00215 PTS_IIA_lac PTS_IIA, P 35.5 79 0.0017 21.9 4.0 27 14-40 15-41 (97)
484 cd02656 MIT MIT: domain contai 35.1 1.2E+02 0.0027 19.4 6.8 16 96-111 20-35 (75)
485 KOG0889|consensus 34.9 4.2E+02 0.0091 30.7 10.6 67 48-114 2812-2886(3550)
486 PF12651 RHH_3: Ribbon-helix-h 34.7 32 0.0007 19.9 1.7 14 234-247 30-43 (44)
487 TIGR00823 EIIA-LAC phosphotran 34.4 83 0.0018 21.9 4.0 27 14-40 17-43 (99)
488 KOG4279|consensus 34.1 4.2E+02 0.0091 26.0 9.4 143 62-244 257-410 (1226)
489 PRK09591 celC cellobiose phosp 33.9 84 0.0018 22.1 4.0 27 14-40 20-46 (104)
490 PF04348 LppC: LppC putative l 33.6 14 0.0003 34.2 0.0 119 11-129 21-147 (536)
491 PF08969 USP8_dimer: USP8 dime 33.4 94 0.002 22.0 4.3 30 14-43 38-67 (115)
492 KOG0739|consensus 32.5 2.6E+02 0.0057 24.1 7.2 63 64-141 7-79 (439)
493 PF14852 Fis1_TPR_N: Fis1 N-te 32.1 72 0.0016 17.4 2.7 13 84-96 3-15 (35)
494 PF02255 PTS_IIA: PTS system, 32.1 93 0.002 21.4 3.9 27 14-40 14-40 (96)
495 KOG1538|consensus 32.1 81 0.0018 29.9 4.5 83 15-108 748-830 (1081)
496 PF02184 HAT: HAT (Half-A-TPR) 31.6 91 0.002 16.8 3.3 15 64-78 3-17 (32)
497 COG4259 Uncharacterized protei 31.1 1.3E+02 0.0027 21.2 4.3 34 82-115 72-105 (121)
498 COG3014 Uncharacterized protei 30.9 3.7E+02 0.008 23.6 8.6 97 18-114 62-245 (449)
499 TIGR00985 3a0801s04tom mitocho 30.7 81 0.0018 23.7 3.7 30 86-115 94-124 (148)
500 KOG3677|consensus 30.1 87 0.0019 28.0 4.2 51 56-110 243-300 (525)
No 1
>KOG4642|consensus
Probab=100.00 E-value=1.3e-41 Score=264.86 Aligned_cols=243 Identities=51% Similarity=0.862 Sum_probs=215.2
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 86 (253)
++.....+..+...|+.+|....|..||.+|.+||.++|..+.+|.|+|.||+++.+|+.+..++++|++++|+.++++|
T Consensus 3 ~~~~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~ 82 (284)
T KOG4642|consen 3 SPEMSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHY 82 (284)
T ss_pred CcccchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHH
Confidence 34455668899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 87 FLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELG 166 (253)
Q Consensus 87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 166 (253)
.+|.+......|++|+..+.+|+.+...++..++.+|...++.++++.|...+.+|+.+..++.+++..+++.+.++.+.
T Consensus 83 flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~El~~yl~slie~~~~~~~s 162 (284)
T KOG4642|consen 83 FLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELELHSYLESLIEGDRERELS 162 (284)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhhHHHHHHHHhccchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877777
Q ss_pred HHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh---------------------------------
Q psy11461 167 SIRRDAETKRLDGDAVQEAVMRIEARRDRSMAELNDLFVAIDERRRK--------------------------------- 213 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~--------------------------------- 213 (253)
....-.+ ++..+.-...-++...+..++++.++|..+++..++
T Consensus 163 ~~~~N~~----sde~~k~~q~~~~~~~d~~~kel~elf~~v~e~rk~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I 238 (284)
T KOG4642|consen 163 EWQENGE----SDEHLKTMQVPIEQDHDHTTKELSELFSKVDEKRKKREVPDYLCGKITLELMREPVITPSGITYDRADI 238 (284)
T ss_pred HHHHcCC----ChHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhHHhhcCCccCccccchhHHHH
Confidence 5554321 112222222334556777778888888777665554
Q ss_pred ------cCCCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhcCcccCC
Q psy11461 214 ------VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253 (253)
Q Consensus 214 ------~g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n~wa~~~ 253 (253)
+|||||+||.||++.+++||++||++|..||.+|+|+++|
T Consensus 239 ~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~~~~ 284 (284)
T KOG4642|consen 239 EEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWADDY 284 (284)
T ss_pred HHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccccccC
Confidence 9999999999999999999999999999999999999986
No 2
>KOG0553|consensus
Probab=99.85 E-value=1e-20 Score=153.36 Aligned_cols=106 Identities=34% Similarity=0.593 Sum_probs=103.7
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
....|..++..|+.+++.++|.+|+..|++||.++|.++.+|+|||.+|.++|.++.|+++|+.||.+||.+.++|.++|
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.+|..+|++.+|++.|++||+++|++
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDN 182 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCc
Confidence 99999999999999999999999998
No 3
>KOG0548|consensus
Probab=99.76 E-value=2.1e-17 Score=142.82 Aligned_cols=144 Identities=30% Similarity=0.493 Sum_probs=123.1
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
+|..+...+..|+.+|..|+|..|+..|++||..+|+++.+|+|||.||.+++.+..|+.+++.+++++|+++++|++.|
T Consensus 354 ~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg 433 (539)
T KOG0548|consen 354 NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKG 433 (539)
T ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 45568888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRW----AETEEKRIAQEIELLTYLNRLIT 158 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~l~~ 158 (253)
.++..+.+|+.|.+.|.++++++|++ .++...+++|..... .....++...+|+++.+|...+.
T Consensus 434 ~al~~mk~ydkAleay~eale~dp~~-----~e~~~~~~rc~~a~~~~~~~ee~~~r~~~dpev~~il~d~~m 501 (539)
T KOG0548|consen 434 AALRAMKEYDKALEAYQEALELDPSN-----AEAIDGYRRCVEAQRGDETPEETKRRAMADPEVQAILQDPAM 501 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchh-----HHHHHHHHHHHHHhhcCCCHHHHHHhhccCHHHHHHHcCHHH
Confidence 99999999999999999999999987 555666666655421 11122455667888777654433
No 4
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.71 E-value=5.6e-16 Score=117.01 Aligned_cols=104 Identities=17% Similarity=0.176 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH 93 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 93 (253)
+..+..+|..++..|+|++|+.+|.+++..+|.++.++.++|.++..+|++++|+..|.+++.++|+++.+++++|.++.
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHhhchhccc
Q psy11461 94 EINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 94 ~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
.+|++++|+..|.++++++|++..
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADAS 127 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChH
Confidence 999999999999999999999854
No 5
>KOG0550|consensus
Probab=99.71 E-value=1.9e-16 Score=133.19 Aligned_cols=182 Identities=21% Similarity=0.379 Sum_probs=139.5
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI----PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ 85 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 85 (253)
.+..-..++..||..|++|.|..|.++|+.+|.++|++ +.+|.|||.+...+|+..+|+.+|..|+.|||..++++
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 45566788999999999999999999999999999974 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhchhc-ccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHH
Q psy11461 86 FFLGQALHEINHYDEAVKHLQRAYDLSREQ-NLNYGDDIACQLRIAKKKRWAETEE-KRIAQEIEL-LTYLNRLITEDAE 162 (253)
Q Consensus 86 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~l~~l~~~~~~ 162 (253)
...|.|+..+++|++|++.|++|+++..+- ...........+++.+++.|..... .+...+.++ .++-...|..++.
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd 404 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPD 404 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCC
Confidence 999999999999999999999999987662 1123344556677777777776653 222222333 2222222222221
Q ss_pred HHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy11461 163 KELGSIRRDAETKRLDGDAVQEAVMRIEARRDRSMAELNDLFVAIDERRRK 213 (253)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 213 (253)
++.. -+.+++..+.++++.|.++++..++
T Consensus 405 ~~ag----------------------sq~eaE~kFkevgeAy~il~d~~kr 433 (486)
T KOG0550|consen 405 KNAG----------------------SQKEAEAKFKEVGEAYTILSDPMKR 433 (486)
T ss_pred cCcc----------------------hhHHHHHHHHHHHHHHHHhcCHHHH
Confidence 1110 1457888999999999988766554
No 6
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.67 E-value=4.3e-15 Score=111.30 Aligned_cols=104 Identities=12% Similarity=0.125 Sum_probs=100.5
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 90 (253)
++.-..++.+|..++..|++++|+..|+-+...+|.++.+|+++|.|+..+|+|.+|+..|.+|+.++|+++.+++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
|++..|+.+.|.+.|+.|+.++.+
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999843
No 7
>KOG0543|consensus
Probab=99.66 E-value=3.1e-15 Score=126.25 Aligned_cols=117 Identities=33% Similarity=0.457 Sum_probs=102.8
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV---------------IPSYFTNRALCYLKLKQYVHCCDDCRKALE 76 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (253)
..+...+..||.+|+.|+|..|...|.+|+..-+. -..++.|+|.||.++++|.+|+..|.++|.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 45677889999999999999999999999877331 124799999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHH
Q psy11461 77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKK 133 (253)
Q Consensus 77 l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~ 133 (253)
++|+|++|+|+.|.++..+|+|+.|+..|++|+++.|+| ..+...+.+++.+
T Consensus 286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-----ka~~~el~~l~~k 337 (397)
T KOG0543|consen 286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-----KAARAELIKLKQK 337 (397)
T ss_pred cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 4455555555544
No 8
>KOG4234|consensus
Probab=99.65 E-value=1e-14 Score=112.15 Aligned_cols=104 Identities=30% Similarity=0.495 Sum_probs=99.1
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP-----SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 86 (253)
..+..++..||.+|..|+|.+|...|+.||...|..+ .+|.|+|.|+++++.|+.|+.+|.+||+++|.+.+|+.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 3567899999999999999999999999999999854 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 87 FLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
++|.+|-.+.+|++|+..|.+.++++|..
T Consensus 173 RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 99999999999999999999999999996
No 9
>KOG1126|consensus
Probab=99.65 E-value=1.3e-15 Score=134.69 Aligned_cols=114 Identities=21% Similarity=0.280 Sum_probs=109.4
Q ss_pred CCCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH
Q psy11461 4 SHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK 83 (253)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (253)
+..+.++|..+..|+.+||+|.-+++++.||++|.+||.++|..+.+|+.+|.=+.....++.|..+|+.||..+|.+..
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn 490 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN 490 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 84 AQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
|||-+|.+|.++++++.|+-.|++|+.++|.+..
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv 524 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV 524 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchh
Confidence 9999999999999999999999999999999843
No 10
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.64 E-value=7.3e-15 Score=126.91 Aligned_cols=102 Identities=29% Similarity=0.463 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE 94 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 94 (253)
..++..|+.++..|+|..|+.+|.+++..+|.++.+|.++|.+|..+|++++|+.++++++.++|++..+++++|.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHhhchhcc
Q psy11461 95 INHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 95 ~~~~~~A~~~~~~al~l~p~~~ 116 (253)
+|++++|+..|+++++++|++.
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~ 104 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDS 104 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999973
No 11
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.64 E-value=1.4e-14 Score=107.88 Aligned_cols=110 Identities=19% Similarity=0.296 Sum_probs=105.4
Q ss_pred CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHH
Q psy11461 6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ 85 (253)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 85 (253)
....+|.++...+.+|..++..|++++|+..|++++..+|.++.++.++|.++..+|++++|+..+.+++.++|.+...+
T Consensus 9 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 88 (135)
T TIGR02552 9 LLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPY 88 (135)
T ss_pred HHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 34567778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 86 FFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 86 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+.+|.++...|++++|+..|+++++++|++
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999987
No 12
>KOG4626|consensus
Probab=99.64 E-value=3.5e-15 Score=131.18 Aligned_cols=148 Identities=22% Similarity=0.187 Sum_probs=105.0
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
-+|..+.+|.++|+.|...+.|+.|+.+|.+|+.+.|.++.++.|+|.+|+.+|..+-|+..|+++++++|+.+.|+.++
T Consensus 247 ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nl 326 (966)
T KOG4626|consen 247 LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNL 326 (966)
T ss_pred CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHH
Confidence 45677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRL 156 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 156 (253)
|.++...|+..+|+.+|.+|+.++|+..+.+...........+-..+.....+...-.|++.+...++
T Consensus 327 anALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNL 394 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNL 394 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhH
Confidence 88888888888888888888888887755444433333333333333333344444445554444433
No 13
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.63 E-value=2.4e-14 Score=113.69 Aligned_cols=109 Identities=19% Similarity=0.233 Sum_probs=103.2
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhhC--HHHHHHHHHHHHhhCCCcHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCY-LKLKQ--YVHCCDDCRKALELEPSLVKA 84 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~al~l~p~~~~a 84 (253)
..+|.++..|..+|..+...|++++|+.+|.+++.++|+++.++.++|.++ ...|+ +++|...++++++++|+++.+
T Consensus 67 ~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~a 146 (198)
T PRK10370 67 RANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTA 146 (198)
T ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhH
Confidence 357889999999999999999999999999999999999999999999985 67787 599999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 85 QFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
++.+|.++...|++++|+..|++++++.|.+.
T Consensus 147 l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 147 LMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999999999864
No 14
>KOG4648|consensus
Probab=99.61 E-value=3.9e-15 Score=122.91 Aligned_cols=103 Identities=38% Similarity=0.566 Sum_probs=99.5
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL 92 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 92 (253)
.+..++..||.||++|+|++||+||+++|..+|.++.++.|||.+|+++.+|..|..+|..|+.++....+||.++|.+-
T Consensus 96 ~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 96 KASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQAR 175 (536)
T ss_pred hhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhhchhc
Q psy11461 93 HEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 93 ~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
..+|+..+|.+.++.+|++.|++
T Consensus 176 ~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHhhHHHHHHhHHHHHhhCccc
Confidence 99999999999999999999996
No 15
>KOG4626|consensus
Probab=99.61 E-value=4.3e-15 Score=130.61 Aligned_cols=145 Identities=17% Similarity=0.129 Sum_probs=103.7
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
..|..+.++.++|.+|+.+|..+-||.+|++||++.|+.+.+|+|+|.++...|+..+|..+|.+|+.+.|+.+.++++|
T Consensus 281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 45666777778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYL 153 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 153 (253)
|.++.++|++++|...|.++++..|+-..++.....-+-++.+...+..-.++.++..|.+...+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~ 425 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL 425 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH
Confidence 88888888888888888888888777655544444444444444444444444555444444333
No 16
>KOG0547|consensus
Probab=99.60 E-value=2.1e-14 Score=123.17 Aligned_cols=96 Identities=38% Similarity=0.637 Sum_probs=92.3
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA 91 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 91 (253)
..+..++..||.+|+.|+|++||++|++||.+.|+.+.+|.||+.||..+|+|++.+++|.+|++++|+.++++++++.+
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA 192 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHH
Q psy11461 92 LHEINHYDEAVKHLQR 107 (253)
Q Consensus 92 ~~~~~~~~~A~~~~~~ 107 (253)
+-.+|++.+|+....-
T Consensus 193 ~E~lg~~~eal~D~tv 208 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTV 208 (606)
T ss_pred HHhhccHHHHHHhhhH
Confidence 9999999999987763
No 17
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.58 E-value=4.2e-14 Score=119.42 Aligned_cols=106 Identities=18% Similarity=0.175 Sum_probs=102.6
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 90 (253)
+..+..++.+|..+...|++.+|+..|++++..+|+++.+|+++|.++..+|++++|+..++++++++|++..+++++|.
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
++...|++++|++.|+++++++|+++
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999874
No 18
>KOG0548|consensus
Probab=99.52 E-value=7.1e-14 Score=121.18 Aligned_cols=104 Identities=28% Similarity=0.437 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH 93 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 93 (253)
+..++..||..|..|+|+.|+.+|+.+|.++|.|..+|.||..||..+|+|.+|+++..+.+.++|..+++|.++|.++.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHhhchhccc
Q psy11461 94 EINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 94 ~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
.+|+|++|+..|.+.|+.+|++..
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~~ 105 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNKQ 105 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchHH
Confidence 999999999999999999999843
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.52 E-value=3.9e-13 Score=124.52 Aligned_cols=134 Identities=17% Similarity=0.084 Sum_probs=110.0
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
.|..+..+..+|..++..|++++|+..|.+++..+|.++..|.++|.++..+|++++|+..+++++.++|+++.+++.+|
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 406 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA 406 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRI 143 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (253)
.++..+|++++|+.+|++++.++|++...+....................++.+
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 460 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK 460 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999999999999875544443333333333333333333333
No 20
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.51 E-value=8.3e-13 Score=103.81 Aligned_cols=144 Identities=19% Similarity=0.162 Sum_probs=123.8
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA 91 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 91 (253)
..+.+...+|..|+..|++..|..-+++|++.+|++..+|..+|..|.++|..+.|.+.|++|++++|++...+.+.|.-
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhhchh---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 92 LHEINHYDEAVKHLQRAYDLSRE---QNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRL 156 (253)
Q Consensus 92 ~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 156 (253)
++.+|++++|...|++|+.- |. ....+.+.....++..+........++.+..+|.....+..+
T Consensus 113 LC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~ 179 (250)
T COG3063 113 LCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLEL 179 (250)
T ss_pred HHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHH
Confidence 99999999999999999963 43 344666677777777777777777777777666654444333
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.50 E-value=7.4e-13 Score=122.67 Aligned_cols=113 Identities=14% Similarity=0.192 Sum_probs=101.2
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
.+|.....+..+|..++..|++++|+..|.+++..+|.++.++.++|.+++.+|++++|+.+|++++.++|++..+++.+
T Consensus 360 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l 439 (615)
T TIGR00990 360 LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439 (615)
T ss_pred cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhcccchHH
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGD 121 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 121 (253)
|.++..+|++++|+..|+++++..|.+...+..
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~ 472 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNFPEAPDVYNY 472 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 999999999999999999999998887554433
No 22
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=1.4e-11 Score=112.70 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=101.6
Q ss_pred CCCcccHHHHHHHHHHHHhc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC
Q psy11461 8 TTNNLSDKELKDEGNRYFGL---------RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE 78 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~---------g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 78 (253)
..+|..+..+..+|.++... +++++|+..+.+++.++|+++.++..+|.++...|++++|+..++++++++
T Consensus 289 ~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 368 (553)
T PRK12370 289 NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS 368 (553)
T ss_pred hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 35677888888888877633 458999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461 79 PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN 118 (253)
Q Consensus 79 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 118 (253)
|+++.+++.+|.++...|++++|+..++++++++|.+...
T Consensus 369 P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 369 PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA 408 (553)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence 9999999999999999999999999999999999997543
No 23
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.47 E-value=2.9e-13 Score=88.89 Aligned_cols=67 Identities=34% Similarity=0.572 Sum_probs=49.8
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHhhCC
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK-QYVHCCDDCRKALELEP 79 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p 79 (253)
++..|..+|..++..|+|++|+.+|++++..+|+++.+++++|.|+..+| ++.+|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46677777777777777777777777777777777777777777777777 57777777777777766
No 24
>KOG0551|consensus
Probab=99.44 E-value=5e-12 Score=104.12 Aligned_cols=104 Identities=31% Similarity=0.515 Sum_probs=96.2
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV----IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
..|.-++..||.||+.++|..|+.+|+++|...-. ++.+|+|||.|.+.+|+|..|+.+|.+|+.++|.+.+++++
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 47889999999999999999999999999988433 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 88 LGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
-|.|++++.++.+|+..+...+.++-+.
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 9999999999999999999888876554
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=5.2e-12 Score=115.50 Aligned_cols=110 Identities=11% Similarity=0.019 Sum_probs=101.8
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
.-+|.++.++..+|..+...|++++|+..|.+++.++|+++.+++++|.++..+|++++|+..+++++.++|.++.+++.
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhc-hhccc
Q psy11461 88 LGQALHEINHYDEAVKHLQRAYDLS-REQNL 117 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al~l~-p~~~~ 117 (253)
++.+++..|++++|+..+++++... |+++.
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~ 442 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPI 442 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccCHH
Confidence 8888888999999999999999876 55443
No 26
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.43 E-value=5.5e-12 Score=91.35 Aligned_cols=102 Identities=18% Similarity=0.216 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc---HHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL---VKAQFF 87 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~ 87 (253)
+..++..|..++..|++++|+..|.+++..+|.+ +.+++.+|.++.+.|+++.|+..++.++..+|++ ..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999876 5789999999999999999999999999999885 678999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 88 LGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+|.++..+|++++|+..+.++++..|++
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 9999999999999999999999999987
No 27
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.43 E-value=4.1e-12 Score=86.81 Aligned_cols=99 Identities=34% Similarity=0.576 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEI 95 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~ 95 (253)
.++.+|..++..|++.+|+..+.+++...|.++.++..+|.++...+++++|+..+.+++.+.|.+..+++.+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhchh
Q psy11461 96 NHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 96 ~~~~~A~~~~~~al~l~p~ 114 (253)
|+++.|...+.++++.+|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988763
No 28
>KOG1125|consensus
Probab=99.42 E-value=7.3e-13 Score=115.83 Aligned_cols=117 Identities=21% Similarity=0.337 Sum_probs=106.5
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA 91 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 91 (253)
.++.....+|..|+-.|+|+.|++||+.|+..+|++..+|..+|.++..-.+..+|+..|++|++|.|..++++|++|.+
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS 507 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS 507 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence 67888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhhchhcccc-----hHHHHHHHHH
Q psy11461 92 LHEINHYDEAVKHLQRAYDLSREQNLN-----YGDDIACQLR 128 (253)
Q Consensus 92 ~~~~~~~~~A~~~~~~al~l~p~~~~~-----~~~~~~~~~~ 128 (253)
+..+|.|.+|+++|..||.+.+.+... -.+.|+..++
T Consensus 508 ~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR 549 (579)
T KOG1125|consen 508 CMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLR 549 (579)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHH
Confidence 999999999999999999998874211 1245666655
No 29
>KOG0624|consensus
Probab=99.41 E-value=7.6e-12 Score=103.65 Aligned_cols=107 Identities=18% Similarity=0.256 Sum_probs=103.7
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
.+|..+...+.+|+.++..|++..|+..|..|+..+|++..+++.||.+|+.+|+...|+.++.+++++.|+...|...+
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
|.+++.+|.+++|+..|+.++..+|++
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999976
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.41 E-value=1.2e-11 Score=118.52 Aligned_cols=102 Identities=10% Similarity=-0.001 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH 93 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 93 (253)
+..+..+|..+.+.|++++|+..|.+++..+|+++.++.++|.++...|++++|+..++++++++|+++.+++++|.++.
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 56677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhCCHHHHHHHHHHHHhhchhc
Q psy11461 94 EINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 94 ~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.+|++++|+..|+++++++|++
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCCC
Confidence 7777777777777777777765
No 31
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.40 E-value=1.8e-12 Score=85.12 Aligned_cols=67 Identities=25% Similarity=0.441 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhch
Q psy11461 47 IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEIN-HYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~-~~~~A~~~~~~al~l~p 113 (253)
++..|.++|.+++..|+|++|+..|.+++.++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999999999999999999999999 79999999999999987
No 32
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.40 E-value=3.2e-11 Score=94.94 Aligned_cols=131 Identities=13% Similarity=0.032 Sum_probs=115.2
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--CCCcHHH
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL--EPSLVKA 84 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p~~~~a 84 (253)
...+|....+|..++..|...|+.+.|-+.|++|++++|.+.++++|.|.-+..+|++++|...|++|+.. -|.-...
T Consensus 62 L~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t 141 (250)
T COG3063 62 LEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDT 141 (250)
T ss_pred HHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchh
Confidence 44678899999999999999999999999999999999999999999999999999999999999999973 2445689
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHH
Q psy11461 85 QFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAE 137 (253)
Q Consensus 85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 137 (253)
+-++|.|..+.|+++.|..+|+++++++|+.+..........+.......+..
T Consensus 142 ~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 142 LENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 99999999999999999999999999999998777666666555554444433
No 33
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.40 E-value=1.1e-11 Score=96.46 Aligned_cols=108 Identities=18% Similarity=0.173 Sum_probs=96.5
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA 84 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (253)
...+..+..++.+|..+...|++++|+.+|.+++...|+. +.++.++|.++..+|++++|+..+.+++.++|.+..+
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA 108 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 3456788899999999999999999999999999887653 5789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC--------------HHHHHHHHHHHHhhchhc
Q psy11461 85 QFFLGQALHEINH--------------YDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 85 ~~~lg~~~~~~~~--------------~~~A~~~~~~al~l~p~~ 115 (253)
+..+|.++..+|+ +.+|++++++++.++|++
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999999887 567777777777777775
No 34
>KOG0545|consensus
Probab=99.39 E-value=1.7e-11 Score=97.23 Aligned_cols=104 Identities=33% Similarity=0.459 Sum_probs=95.4
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPV----------IPSYFTNRALCYLKLKQYVHCCDDCRKA 74 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (253)
....+...||.+|+.|+|.+|+..|..||.. .|. ...++.|.+.|++..|+|-+++..+..+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999865 333 4468999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 75 l~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
+..+|.|.+|+|.+|.++...-+..+|...|.++++++|.-.
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 999999999999999999999999999999999999999853
No 35
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.38 E-value=2.1e-11 Score=112.98 Aligned_cols=132 Identities=9% Similarity=-0.045 Sum_probs=114.2
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
-+..+.+++.+|....+.|.+++|+..+..++...|++..++.++|.++.+++++++|...+++++..+|++..+++.+|
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 35668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEK 141 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (253)
.++.++|++++|+..|++++..+|++...+..........+....+....++
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999998888766555555444444444444433333
No 36
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=4.8e-11 Score=95.67 Aligned_cols=104 Identities=21% Similarity=0.227 Sum_probs=98.4
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
.....+..+..+|..++..|++++|+..+.+++..+|.+..++..+|.++..+|++++|+..+.+++.++|.+..+++.+
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 105 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY 105 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 33456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~ 112 (253)
|.++...|++++|+..+.+++...
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~ 129 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDP 129 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcc
Confidence 999999999999999999999854
No 37
>PRK15331 chaperone protein SicA; Provisional
Probab=99.37 E-value=1.2e-11 Score=93.31 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=100.7
Q ss_pred CCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461 5 HNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA 84 (253)
Q Consensus 5 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (253)
.+..-++..-...+..|..++..|++++|...|+-....+|.++.++..+|.|+..+++|++|+..|..|..++++++..
T Consensus 28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p 107 (165)
T PRK15331 28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP 107 (165)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence 34555667788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy11461 85 QFFLGQALHEINHYDEAVKHLQRAYD 110 (253)
Q Consensus 85 ~~~lg~~~~~~~~~~~A~~~~~~al~ 110 (253)
.++.|.|++.+|+...|..+|..++.
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999999998
No 38
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.37 E-value=4.2e-11 Score=111.50 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=90.9
Q ss_pred CCcccHHHHHHHHHHHHhccCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEE----AINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA 84 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~----A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (253)
..|..+..+..+|..++..|++++ |+..|.+++..+|+++.++.++|.++..+|++++|+..+++++.++|++..+
T Consensus 241 ~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a 320 (656)
T PRK15174 241 RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYV 320 (656)
T ss_pred cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 346667788888888888888875 7888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 85 QFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
+..+|.++...|++++|+..|++++..+|++.
T Consensus 321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 321 RAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 88888888888888888888888888888754
No 39
>KOG0547|consensus
Probab=99.37 E-value=2.1e-11 Score=105.09 Aligned_cols=146 Identities=23% Similarity=0.236 Sum_probs=126.4
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL 92 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 92 (253)
-+.++...|..+|-.|++..|-..+.++|.++|.+..+|..||.+|...++..+...+|.+|..+||+|+..|+.+|+.+
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR 404 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy11461 93 HEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIA---QEIELLTYLNRLIT 158 (253)
Q Consensus 93 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~l~~ 158 (253)
+-++++++|+..|+++++++|++..++.+......+..+-.......++.+. .-||...++-+++.
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLt 473 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILT 473 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Confidence 9999999999999999999999988887777777777655555444444443 45556666655554
No 40
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=5.2e-11 Score=100.62 Aligned_cols=103 Identities=13% Similarity=0.124 Sum_probs=88.1
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
..+|..+.++..+|..+...|++++|+..|.+++.++|++..++.++|.++...|++++|+.++++++.++|+++.....
T Consensus 92 ~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~ 171 (296)
T PRK11189 92 ALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW 171 (296)
T ss_pred HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999998743222
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 88 LGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
+ .+....+++++|+..|.++...
T Consensus 172 ~-~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 172 L-YLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred H-HHHHccCCHHHHHHHHHHHHhh
Confidence 2 2334567788888888665543
No 41
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.35 E-value=2.2e-11 Score=116.80 Aligned_cols=137 Identities=20% Similarity=0.094 Sum_probs=113.9
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 90 (253)
|.....+..++......|++++|+..|.+++..+|+ +.++.++|.++.++|++++|+..+++++.++|+++.++.++|.
T Consensus 573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~ 651 (987)
T PRK09782 573 LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY 651 (987)
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 344445555566666779999999999999999996 8999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIE 148 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (253)
++...|++++|+..|+++++++|+++..+....................++.+...|+
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999998776666666666655555555555555555554
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=1.6e-10 Score=92.64 Aligned_cols=108 Identities=19% Similarity=0.197 Sum_probs=100.2
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC--CCcHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE--PSLVKAQF 86 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--p~~~~a~~ 86 (253)
..|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+.+++... +.....++
T Consensus 60 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 139 (234)
T TIGR02521 60 HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLE 139 (234)
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHH
Confidence 3567788999999999999999999999999999999999999999999999999999999999999854 55678899
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 87 FLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
.+|.++...|++++|...+.+++..+|++.
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 169 (234)
T TIGR02521 140 NAGLCALKAGDFDKAEKYLTRALQIDPQRP 169 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCCh
Confidence 999999999999999999999999998864
No 43
>KOG1126|consensus
Probab=99.35 E-value=4.6e-12 Score=112.47 Aligned_cols=129 Identities=15% Similarity=0.204 Sum_probs=114.7
Q ss_pred CCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461 5 HNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA 84 (253)
Q Consensus 5 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (253)
+..+-+|..+-+|..+|..+.....|+.|..+|++|+..+|.+..+|+.+|.+|.++++++.|.-.|++|+.++|.|...
T Consensus 446 RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi 525 (638)
T KOG1126|consen 446 RAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVI 525 (638)
T ss_pred HhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhH
Confidence 34556788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHH
Q psy11461 85 QFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKK 133 (253)
Q Consensus 85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~ 133 (253)
...+|..+.++|+.++|+..|++|+.++|.++......+.......+..
T Consensus 526 ~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 526 LCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred HhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH
Confidence 9999999999999999999999999999998765544444444443333
No 44
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.34 E-value=1.2e-11 Score=93.34 Aligned_cols=89 Identities=13% Similarity=0.149 Sum_probs=84.0
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
..+|..+..+..+|..+...|++++|+.+|.+++..+|.++.+++++|.|+..+|++++|+..|.+++.++|+++.++..
T Consensus 52 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 52 MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEI 131 (144)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q psy11461 88 LGQALHEIN 96 (253)
Q Consensus 88 lg~~~~~~~ 96 (253)
+|.+...++
T Consensus 132 ~~~~~~~l~ 140 (144)
T PRK15359 132 RQNAQIMVD 140 (144)
T ss_pred HHHHHHHHH
Confidence 998876543
No 45
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.34 E-value=4.1e-12 Score=86.84 Aligned_cols=81 Identities=31% Similarity=0.591 Sum_probs=73.9
Q ss_pred ccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q psy11461 27 LRQYEEAINCYTRAIIKNPV--IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKH 104 (253)
Q Consensus 27 ~g~~~~A~~~y~~ai~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~ 104 (253)
+|+|+.|+..|.+++..+|. +..++.++|.||+++|+|++|+..+++ +..+|.+...++.+|.|+..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999995 467788899999999999999999999 889999999999999999999999999999
Q ss_pred HHHH
Q psy11461 105 LQRA 108 (253)
Q Consensus 105 ~~~a 108 (253)
|.++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 46
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.34 E-value=3.3e-11 Score=95.75 Aligned_cols=110 Identities=15% Similarity=0.069 Sum_probs=95.2
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH-HHhCC--HHHHHH
Q psy11461 27 LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL-HEINH--YDEAVK 103 (253)
Q Consensus 27 ~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~-~~~~~--~~~A~~ 103 (253)
.++.++++..+.+++..+|+++..|..+|.+|...|++++|+..|++++.++|++..++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567789999999999999999999999999999999999999999999999999999999999985 67777 599999
Q ss_pred HHHHHHhhchhcccchHHHHHHHHHHHHHHHHH
Q psy11461 104 HLQRAYDLSREQNLNYGDDIACQLRIAKKKRWA 136 (253)
Q Consensus 104 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~ 136 (253)
.++++++++|++...+...............+.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAI 164 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Confidence 999999999998766655555555444444333
No 47
>KOG1155|consensus
Probab=99.32 E-value=3.4e-11 Score=103.16 Aligned_cols=108 Identities=22% Similarity=0.231 Sum_probs=97.7
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
+.-.+...+-.||.|.-+++.+.|+.+|++|+++||....+|+.+|.-|..+++...|+..|++|++++|.+.+|||.+|
T Consensus 326 dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLG 405 (559)
T KOG1155|consen 326 DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLG 405 (559)
T ss_pred ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhh
Confidence 44455666778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
++|--++.+.=|+-+|++|+++-|+++.
T Consensus 406 QaYeim~Mh~YaLyYfqkA~~~kPnDsR 433 (559)
T KOG1155|consen 406 QAYEIMKMHFYALYYFQKALELKPNDSR 433 (559)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCchH
Confidence 9999999999999999999999998843
No 48
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=9.4e-11 Score=96.09 Aligned_cols=108 Identities=22% Similarity=0.199 Sum_probs=102.8
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHhhCCCcHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK---QYVHCCDDCRKALELEPSLVKA 84 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~~~a 84 (253)
..+|.++..|..+|.+|+..|++..|...|.+|+++.|+++..+..+|.+++.+. ...++...+++++.+||.++.+
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 3678999999999999999999999999999999999999999999999998765 4788999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 85 QFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.+.||..+++.|+|.+|+..++..+...|.+
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999886
No 49
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.31 E-value=2.6e-10 Score=92.98 Aligned_cols=109 Identities=18% Similarity=0.248 Sum_probs=100.9
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH-
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP---SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK- 83 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~- 83 (253)
+..+..+..++.+|..++..|+|+.|+..|.+++..+|.++ .+++.+|.++...|++++|+..++++++.+|+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 45677899999999999999999999999999999999876 57899999999999999999999999999998776
Q ss_pred --HHHHHHHHHHHh--------CCHHHHHHHHHHHHhhchhcc
Q psy11461 84 --AQFFLGQALHEI--------NHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 84 --a~~~lg~~~~~~--------~~~~~A~~~~~~al~l~p~~~ 116 (253)
+++.+|.++... |++++|+..|.+++...|++.
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 149 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE 149 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence 799999999987 889999999999999999974
No 50
>KOG1155|consensus
Probab=99.31 E-value=1.2e-10 Score=99.76 Aligned_cols=107 Identities=25% Similarity=0.272 Sum_probs=102.5
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
-+|....+|..+|..|+..++...|++.|+.|+.++|.+..+|+.+|++|--++.+.=|+-.|++|+.+.|++...|..+
T Consensus 359 LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aL 438 (559)
T KOG1155|consen 359 LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVAL 438 (559)
T ss_pred cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
|.||.++++.++|+++|.+|+..+-.+
T Consensus 439 G~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 439 GECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHHHHhccHHHHHHHHHHHHhccccc
Confidence 999999999999999999999886553
No 51
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.29 E-value=1e-10 Score=90.58 Aligned_cols=105 Identities=18% Similarity=0.104 Sum_probs=90.4
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV---IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
...+..++..|..+...|+|++|+..|.+++.+.|+ .+.++.++|.++..+|++++|+..+.+++.++|.+..++..
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 446788899999999999999999999999988766 34589999999999999999999999999999999999999
Q ss_pred HHHHHH-------HhCCHH-------HHHHHHHHHHhhchhc
Q psy11461 88 LGQALH-------EINHYD-------EAVKHLQRAYDLSREQ 115 (253)
Q Consensus 88 lg~~~~-------~~~~~~-------~A~~~~~~al~l~p~~ 115 (253)
+|.++. .+|+++ +|+..|++++..+|.+
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999998 777776 4555555666666654
No 52
>KOG0376|consensus
Probab=99.28 E-value=7.5e-12 Score=107.87 Aligned_cols=103 Identities=31% Similarity=0.511 Sum_probs=100.2
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL 92 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 92 (253)
.+..+...|+.++.-++|+.|+..|++||.++|+++.++.+|+.++++.+++..|+.++.+|++++|...++|++.|.++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 36678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhhchhc
Q psy11461 93 HEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 93 ~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
..++.+.+|...|++...+.|+.
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPND 105 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCc
Confidence 99999999999999999999997
No 53
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.27 E-value=2.2e-10 Score=106.69 Aligned_cols=109 Identities=15% Similarity=0.083 Sum_probs=103.8
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
..|..+..+..+|..+...|++++|+..|++++..+|.++.++.++|.++...|++++|+..+++++..+|++...+..+
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~ 358 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA 358 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
|.++...|++++|+..|+++++.+|++..
T Consensus 359 a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 99999999999999999999999998754
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.25 E-value=3.3e-11 Score=100.95 Aligned_cols=107 Identities=20% Similarity=0.232 Sum_probs=64.4
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 90 (253)
+.++..|...|..+.+.|++++|+.+|++++..+|+++.+...++.++...|+++++...+.......|.++..+..+|.
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~ 222 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA 222 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666655555666666666666
Q ss_pred HHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
++..+|++++|+..|+++++.+|+++.
T Consensus 223 ~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred Hhccccccccccccccccccccccccc
Confidence 666666666666666666666666543
No 55
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.25 E-value=1.9e-10 Score=92.18 Aligned_cols=109 Identities=18% Similarity=0.143 Sum_probs=99.5
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 86 (253)
...++.+...+..+|...++.|+|..|+..+.++....|++..+|+.+|.+|-+.|++++|...|.+++++.|+.+.+..
T Consensus 93 ~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~n 172 (257)
T COG5010 93 AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN 172 (257)
T ss_pred hccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhh
Confidence 33556677777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 87 FLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
++|..+.-.|+++.|..++..+....+.+
T Consensus 173 Nlgms~~L~gd~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 173 NLGMSLLLRGDLEDAETLLLPAYLSPAAD 201 (257)
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999998776655
No 56
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.25 E-value=3.3e-11 Score=78.06 Aligned_cols=62 Identities=26% Similarity=0.396 Sum_probs=31.7
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 54 RALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 54 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+|..++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44555555555555555555555555555555555555555555555555555555555543
No 57
>PLN02789 farnesyltranstransferase
Probab=99.23 E-value=3.2e-10 Score=96.38 Aligned_cols=117 Identities=14% Similarity=0.054 Sum_probs=105.3
Q ss_pred CCCCcccHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCH--HHHHHHHHHHHhhCCCcHH
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLR-QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQY--VHCCDDCRKALELEPSLVK 83 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g-~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~l~p~~~~ 83 (253)
...+|....+|..+|.++...| ++.+++.++.+++..+|.+..+|.+++.++.+++.. .+++..+.++++++|+|..
T Consensus 64 I~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~ 143 (320)
T PLN02789 64 IRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH 143 (320)
T ss_pred HHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH
Confidence 3457888999999999999998 689999999999999999999999999999998874 7889999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHH
Q psy11461 84 AQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDI 123 (253)
Q Consensus 84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 123 (253)
+|..+|.++..+|++++|++++.++++.+|.+..++....
T Consensus 144 AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~ 183 (320)
T PLN02789 144 AWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRY 183 (320)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHH
Confidence 9999999999999999999999999999999866555443
No 58
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.22 E-value=6.4e-11 Score=76.70 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=60.9
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH
Q psy11461 18 KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV 82 (253)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (253)
+.+|..++..|+|++|+.+|++++..+|.++.++..+|.|+..+|++++|+..++++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999875
No 59
>KOG0624|consensus
Probab=99.22 E-value=6.1e-10 Score=92.52 Aligned_cols=181 Identities=14% Similarity=0.216 Sum_probs=105.5
Q ss_pred HhccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHH
Q psy11461 25 FGLRQYEEAINCYTRAIIKNPVIPS----YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDE 100 (253)
Q Consensus 25 ~~~g~~~~A~~~y~~ai~~~p~~~~----~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~ 100 (253)
...++|.++++.+.+.+..+|..+. .+..+..|+..-+++.+|++-|.+++.++|+++.++.-+|.+|+.-..|+.
T Consensus 280 ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~ 359 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDD 359 (504)
T ss_pred HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHH
Confidence 3334444444444444444444222 233457788888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccch
Q psy11461 101 AVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGD 180 (253)
Q Consensus 101 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 180 (253)
|+..|++|.++++++ ..+...+.++++..-....+.-.+...--+..-++-|.+...+-..+.+++.-..+
T Consensus 360 AI~dye~A~e~n~sn-----~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdE---- 430 (504)
T KOG0624|consen 360 AIHDYEKALELNESN-----TRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDE---- 430 (504)
T ss_pred HHHHHHHHHhcCccc-----HHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCH----
Confidence 999999999999887 23333333333322111100000000000000112223333333444444332111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh----cCCCCCCCC
Q psy11461 181 AVQEAVMRIEARRDRSMAELNDLFVAIDERRRK----VGHFDPVTR 222 (253)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~g~~DP~tr 222 (253)
+..+.+++++.++...-++++++.+. +|. ||+--
T Consensus 431 -------eEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe-DPLD~ 468 (504)
T KOG0624|consen 431 -------EEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE-DPLDP 468 (504)
T ss_pred -------HHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC-CCCCh
Confidence 13567888999988888888766654 553 55543
No 60
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.22 E-value=2.1e-10 Score=85.26 Aligned_cols=87 Identities=11% Similarity=0.048 Sum_probs=81.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 35 NCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 35 ~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
+.|.+++..+|.+......+|.++...|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..+.+++.++|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccchHH
Q psy11461 115 QNLNYGD 121 (253)
Q Consensus 115 ~~~~~~~ 121 (253)
+...+..
T Consensus 84 ~~~~~~~ 90 (135)
T TIGR02552 84 DPRPYFH 90 (135)
T ss_pred ChHHHHH
Confidence 7554433
No 61
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.20 E-value=4.8e-10 Score=91.38 Aligned_cols=109 Identities=15% Similarity=0.218 Sum_probs=96.5
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh--------hCHHHHHHHHHHHH
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS---YFTNRALCYLKL--------KQYVHCCDDCRKAL 75 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~---~~~~~a~~~~~~--------~~~~~A~~~~~~al 75 (253)
.+.++....+++.+|..++..|++++|+..|.+++..+|+++. +++.+|.++... |++++|+..+.+++
T Consensus 63 ~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 142 (235)
T TIGR03302 63 YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELI 142 (235)
T ss_pred CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 3455555678999999999999999999999999999998776 789999999987 89999999999999
Q ss_pred hhCCCcHHHH-----------------HHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 76 ELEPSLVKAQ-----------------FFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 76 ~l~p~~~~a~-----------------~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
..+|++..++ +.+|.+++..|++.+|+..+.+++...|+.
T Consensus 143 ~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (235)
T TIGR03302 143 RRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDT 199 (235)
T ss_pred HHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence 9999986542 467888999999999999999999998875
No 62
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.20 E-value=6.7e-10 Score=91.77 Aligned_cols=103 Identities=11% Similarity=0.018 Sum_probs=95.2
Q ss_pred cHHHHHHHHHHH-HhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC---cHHHH
Q psy11461 13 SDKELKDEGNRY-FGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPS---LVKAQ 85 (253)
Q Consensus 13 ~a~~~~~~g~~~-~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~ 85 (253)
.....+..|..+ +..|+|++|+..|...+..+|++ +.+++.+|.+|+..|++++|+..|.+++...|+ .+.++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 457788888887 66899999999999999999998 579999999999999999999999999998887 46789
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 86 FFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 86 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+.+|.++..+|++++|...|+++++..|++
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 999999999999999999999999999986
No 63
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.20 E-value=7.1e-10 Score=102.93 Aligned_cols=108 Identities=10% Similarity=-0.099 Sum_probs=103.7
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
.-.|+...++..++..+.+.+++++|...+.+++..+|+++.+++.+|.++.++|++++|+..|++++..+|++..++..
T Consensus 114 ~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~ 193 (694)
T PRK15179 114 QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVG 193 (694)
T ss_pred hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 88 LGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+|.++...|+.++|...|++|+......
T Consensus 194 ~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 194 WAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 9999999999999999999999986654
No 64
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.19 E-value=5.7e-10 Score=106.33 Aligned_cols=116 Identities=19% Similarity=0.162 Sum_probs=104.5
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
..+..+..+..+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+.+++..+|.+..+++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 199 (899)
T TIGR02917 120 DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK 199 (899)
T ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHH
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIA 124 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 124 (253)
|.++...|++++|+..|++++..+|.+.......+.
T Consensus 200 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 235 (899)
T TIGR02917 200 GDLLLSLGNIELALAAYRKAIALRPNNPAVLLALAT 235 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 999999999999999999999999987554433333
No 65
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.18 E-value=8e-10 Score=105.33 Aligned_cols=132 Identities=14% Similarity=0.038 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE 94 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 94 (253)
..+..+|..+...|++.+|+..+.+++..+|.++.++.++|.+|..+|++++|+..|++++..+|+++.++..+|.++..
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE 816 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 55677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 95 INHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEI 147 (253)
Q Consensus 95 ~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (253)
.|+ .+|+..+++++.+.|+++..+...........+........++.+...|
T Consensus 817 ~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 817 LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888 7788888888888877755444444444444444445555555554433
No 66
>KOG4555|consensus
Probab=99.16 E-value=2.9e-09 Score=76.85 Aligned_cols=102 Identities=22% Similarity=0.191 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH----HHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV----KAQFFLG 89 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~----~a~~~lg 89 (253)
+..+-..|..+...|+.+.|++.|.+++.+.|..+.+|+|+|.++.-+|+.++|+.++.+|+++..... .++..+|
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 446667888889999999999999999999999999999999999999999999999999999975433 4688999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.+|..+|+.+.|...|..|-+++...
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 99999999999999999999998664
No 67
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.15 E-value=1.9e-09 Score=94.27 Aligned_cols=106 Identities=19% Similarity=0.215 Sum_probs=95.7
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP-----SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA 84 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (253)
.+.....+..++..+...|++++|+..|.+++..+|.+. .++.++|.++...|++++|+..++++++.+|++..+
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 216 (389)
T PRK11788 137 GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRA 216 (389)
T ss_pred CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHH
Confidence 556778899999999999999999999999999888653 367789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 85 QFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
++.+|.++...|++++|+..|.+++..+|.+
T Consensus 217 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 9999999999999999999999999988875
No 68
>KOG2076|consensus
Probab=99.14 E-value=6.8e-09 Score=95.34 Aligned_cols=126 Identities=16% Similarity=0.073 Sum_probs=110.7
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 90 (253)
+.....+...||.+|..|++++|+..+.++|..+|.++.+|..+|.+|-++|+..+|....-.|-.++|.+..-|..++.
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHH
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWA 136 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~ 136 (253)
...++|++..|.-+|.+|++.+|.+..-.........+.+....+.
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am 261 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAM 261 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHH
Confidence 9999999999999999999999998654444444444444444433
No 69
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.14 E-value=1.6e-09 Score=102.81 Aligned_cols=110 Identities=12% Similarity=0.161 Sum_probs=104.3
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
..|..+..+..+|..+...|++.+|+..|.+++..+|.++.++..+|.++...|++++|+..+++++..+|++.. ++.+
T Consensus 44 ~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~l 122 (765)
T PRK10049 44 HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLAL 122 (765)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHH
Confidence 356778889999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNY 119 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 119 (253)
|.++...|++++|+..+++++++.|++....
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~P~~~~~~ 153 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRAPQTQQYP 153 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999999985543
No 70
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.11 E-value=5.4e-09 Score=91.36 Aligned_cols=102 Identities=14% Similarity=0.110 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH-----HHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV-----KAQFFLG 89 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-----~a~~~lg 89 (253)
..+..+|..++..|+++.|+..|.+++..+|.+..++..++.++.+.|++++|+..+.+++..+|.+. ..+..+|
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 44566666666666666666666666666666666666666666666666666666666666655432 2344566
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
.++...|++++|+..|.++++.+|+..
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~~~ 214 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQCV 214 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcCCH
Confidence 666666666666666666666666543
No 71
>KOG4162|consensus
Probab=99.11 E-value=8.3e-10 Score=99.77 Aligned_cols=107 Identities=22% Similarity=0.193 Sum_probs=101.8
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHH--HHHHHHhhCCCcHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCD--DCRKALELEPSLVKAQFF 87 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~--~~~~al~l~p~~~~a~~~ 87 (253)
.+..+..|+..|..+..+|++.+|.++|..|+.++|+++.....+|.++.+.|+..-|.. .+..++++||.|.++||.
T Consensus 680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 456678899999999999999999999999999999999999999999999998888877 999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 88 LGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
+|.++..+|+.++|.++|..|+++.+.++
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 99999999999999999999999998875
No 72
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.10 E-value=2.8e-09 Score=105.42 Aligned_cols=95 Identities=20% Similarity=0.180 Sum_probs=49.8
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH--------------HH
Q psy11461 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA--------------QF 86 (253)
Q Consensus 21 g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a--------------~~ 86 (253)
|..++..|++++|+..|++++..+|.++.++..+|.+|.++|++++|+..|+++++++|++... ..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555543211 11
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 87 FLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.+|.++...|++++|+..|+++++++|++
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~ 384 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTD 384 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 22444445555555555555555555544
No 73
>PLN02789 farnesyltranstransferase
Probab=99.10 E-value=4.5e-09 Score=89.36 Aligned_cols=115 Identities=11% Similarity=0.068 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK-QYVHCCDDCRKALELEPSLVKAQFFLGQALH 93 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 93 (253)
.++-.+-..+...++++.|+..+.++|.++|.+..+|..|+.++..++ .+.+++..+.+++..+|++..+|++++.++.
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 333334444667889999999999999999999999999999999998 6899999999999999999999999999999
Q ss_pred HhCCH--HHHHHHHHHHHhhchhcccchHHHHHHHHHH
Q psy11461 94 EINHY--DEAVKHLQRAYDLSREQNLNYGDDIACQLRI 129 (253)
Q Consensus 94 ~~~~~--~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 129 (253)
.+|.. ++++.++.++++++|.+..++....+.....
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l 155 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL 155 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 99874 7889999999999999877666555444333
No 74
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.08 E-value=5.7e-10 Score=72.79 Aligned_cols=67 Identities=30% Similarity=0.381 Sum_probs=56.4
Q ss_pred HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461 24 YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90 (253)
Q Consensus 24 ~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 90 (253)
++..|+|++|+..|++++..+|+++.++..+|.||.+.|++++|...+.+++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3578889999999999999999999999999999999999999999999999888888777766654
No 75
>KOG1173|consensus
Probab=99.08 E-value=1.6e-09 Score=95.04 Aligned_cols=109 Identities=22% Similarity=0.334 Sum_probs=100.1
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNP-------VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP 79 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 79 (253)
..-.|.++..+..+|...|..+.|.+|+.+|..++..-+ .....+.|+|.++.+++.+.+|+..+++++.+.|
T Consensus 407 ~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 407 LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 345678889999999999999999999999999994422 2456799999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 80 SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 80 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.+..++-.+|.+|..+|+++.|+..|.++|-+.|++
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999997
No 76
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.08 E-value=1.1e-09 Score=72.53 Aligned_cols=69 Identities=30% Similarity=0.499 Sum_probs=57.4
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 21 g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
...++..++|+.|+.++..++..+|.++.++..+|.|+..+|++.+|+.+++++++..|++..+...++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 467788888888888888888888888888888888888888888888888888888888877765544
No 77
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.07 E-value=3.9e-09 Score=104.38 Aligned_cols=107 Identities=11% Similarity=0.018 Sum_probs=94.0
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
.|.++..+..+|..+...|++++|+.+|.+++..+|.++.++.++|.+|...|++++|+..+++++...|+++.++..+|
T Consensus 599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la 678 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVA 678 (1157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 45566778889999999999999999999999999999999999999999999999999999999988899888899999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
.++..+|++++|++.|++++...|+++
T Consensus 679 ~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 679 LAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 999999999999999999988876653
No 78
>KOG1125|consensus
Probab=99.05 E-value=5.7e-09 Score=91.83 Aligned_cols=88 Identities=18% Similarity=0.108 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHH
Q psy11461 47 IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQ 126 (253)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 126 (253)
+++++..||..|...|+|++|+.+|+.||..+|++...|.+||-++..-.+.++|+..|++|+++.|+............
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~ 508 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC 508 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence 33446677777777888888888888888888888888888888888888888899999999998888766555555555
Q ss_pred HHHHHHHH
Q psy11461 127 LRIAKKKR 134 (253)
Q Consensus 127 ~~~~~~~~ 134 (253)
+..+..+.
T Consensus 509 mNlG~ykE 516 (579)
T KOG1125|consen 509 MNLGAYKE 516 (579)
T ss_pred hhhhhHHH
Confidence 55544443
No 79
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.04 E-value=8.3e-09 Score=82.89 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=117.7
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
.+|.+... ...+..++..|+-+.+.....++...+|.+..+....|...+..|+|..|+..++++..+.|++.++|..+
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 45666666 88999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHH
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEE 140 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (253)
|.+|.+.|++++|...|.+++++.|+++....+....++....+........
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll 192 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLL 192 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999998888777777777777766655543
No 80
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.03 E-value=4.6e-09 Score=99.73 Aligned_cols=104 Identities=8% Similarity=-0.115 Sum_probs=100.1
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL 92 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 92 (253)
....+..+|..+...|++++|+..+.+++...|.++.++..+|.++...|++++|+..+++++.++|++..+++.+|.++
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 93 HEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 93 ~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
..+|++++|+..++++++..|+++
T Consensus 438 l~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999983
No 81
>KOG0553|consensus
Probab=99.02 E-value=1.8e-09 Score=88.24 Aligned_cols=92 Identities=23% Similarity=0.303 Sum_probs=85.1
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
.-.|.++..|++++-.|.+.|.|+.|++....||.+||....+|..+|.+|+.+|++.+|+..|++||.++|+|.....+
T Consensus 109 ~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~n 188 (304)
T KOG0553|consen 109 ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSN 188 (304)
T ss_pred hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHH
Confidence 34688899999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHhCCHH
Q psy11461 88 LGQALHEINHYD 99 (253)
Q Consensus 88 lg~~~~~~~~~~ 99 (253)
|..+-..++...
T Consensus 189 L~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 189 LKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHhcCCC
Confidence 887777666554
No 82
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.02 E-value=1.7e-08 Score=95.41 Aligned_cols=141 Identities=7% Similarity=-0.081 Sum_probs=100.9
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
...|..+...+..+...++.|++..|+..|.+++..+|.++.....++.++...|+.++|+..+++++.-.|.+...+..
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~lla 107 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLAS 107 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence 34566788899999999999999999999999999999986444477888888888888888888888333444444555
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 88 LGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIE 148 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (253)
+|.++..+|++++|++.|+++++.+|+++..+...+.......+...+....++.....|.
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence 5778888888888888888888888888655543333333333333333333333333443
No 83
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.02 E-value=4.3e-09 Score=91.13 Aligned_cols=89 Identities=16% Similarity=0.232 Sum_probs=83.6
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
...|..+..+..+|.+++..|++++|+..+.+++.++|.++.+|+++|.+|+.+|+|++|+..|++++.++|++..+...
T Consensus 30 ~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 30 DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q psy11461 88 LGQALHEIN 96 (253)
Q Consensus 88 lg~~~~~~~ 96 (253)
++.|...+.
T Consensus 110 l~~~~~kl~ 118 (356)
T PLN03088 110 IKECDEKIA 118 (356)
T ss_pred HHHHHHHHH
Confidence 998866663
No 84
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.01 E-value=7.4e-09 Score=78.19 Aligned_cols=98 Identities=20% Similarity=0.176 Sum_probs=70.5
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
+-...+.+.+|..++..|+|++|+..|..++...|+. +.+...+|.+++..|++++|+..+.. +.-.+-.+.++..
T Consensus 45 ~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~ 123 (145)
T PF09976_consen 45 PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAEL 123 (145)
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHH
Confidence 3446677778888888888888888888888776544 34667778888888888888888755 2333344566777
Q ss_pred HHHHHHHhCCHHHHHHHHHHHH
Q psy11461 88 LGQALHEINHYDEAVKHLQRAY 109 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al 109 (253)
+|.++...|++++|+..|++|+
T Consensus 124 ~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 124 LGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHhC
Confidence 7888888888888888887764
No 85
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.01 E-value=3.5e-08 Score=80.89 Aligned_cols=117 Identities=12% Similarity=0.114 Sum_probs=97.4
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH---HHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYF---TNRALCYLKLKQYVHCCDDCRKALELEPSLV---KAQ 85 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~ 85 (253)
..+..++..|..++..|+|++|+..|.+++..+|..+.+. ..+|.+|++.+++++|+..+++.++++|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 5788899999999999999999999999999999987654 8999999999999999999999999998864 579
Q ss_pred HHHHHHHHHhC---------------C---HHHHHHHHHHHHhhchhcccchHHHHHHHHHHH
Q psy11461 86 FFLGQALHEIN---------------H---YDEAVKHLQRAYDLSREQNLNYGDDIACQLRIA 130 (253)
Q Consensus 86 ~~lg~~~~~~~---------------~---~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 130 (253)
|.+|.++..++ + ..+|+..|++.++..|++ .+..+....+..+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S--~ya~~A~~rl~~l 170 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS--QYTTDATKRLVFL 170 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC--hhHHHHHHHHHHH
Confidence 99999875554 1 357889999999999987 3344444333333
No 86
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.00 E-value=1.6e-08 Score=74.86 Aligned_cols=105 Identities=19% Similarity=0.215 Sum_probs=95.5
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH---HH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV---KA 84 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a 84 (253)
...+..++..|...++.|+|.+|++.++......|.. ..+...++.+|++.++|++|+..+++-|+++|+++ .+
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3457889999999999999999999999999998864 56899999999999999999999999999999876 57
Q ss_pred HHHHHHHHHHhCC---------------HHHHHHHHHHHHhhchhc
Q psy11461 85 QFFLGQALHEINH---------------YDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 85 ~~~lg~~~~~~~~---------------~~~A~~~~~~al~l~p~~ 115 (253)
+|..|.+++.+.. ...|...|.+.++.-|++
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 9999999999876 788999999999999987
No 87
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.00 E-value=1.6e-08 Score=73.40 Aligned_cols=96 Identities=25% Similarity=0.188 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC---cHHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPS---LVKAQFFL 88 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~l 88 (253)
.++++.|..+-..|+.++|+..|.+++...... ..++..+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 568999999999999999999999999986554 468999999999999999999999999999888 88888999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHh
Q psy11461 89 GQALHEINHYDEAVKHLQRAYD 110 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~ 110 (253)
+.++...|++++|+..+..++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988774
No 88
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.00 E-value=1e-08 Score=85.86 Aligned_cols=121 Identities=24% Similarity=0.274 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKN--PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 90 (253)
++..+......+...|+++.+...+.++.... +.++.+|..+|.++.+.|++++|+.++++|++++|++..+...++.
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~ 188 (280)
T PF13429_consen 109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAW 188 (280)
T ss_dssp ---------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34555566677778888888888888866554 5677788888888888888888888888888888888888888888
Q ss_pred HHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHH
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKK 133 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~ 133 (253)
++...|+++++...+....+..|.++..+.......+......
T Consensus 189 ~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~ 231 (280)
T PF13429_consen 189 LLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYE 231 (280)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HH
T ss_pred HHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccc
Confidence 8888888888777777777777776554443333333333333
No 89
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.00 E-value=4.3e-08 Score=78.29 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=90.7
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH---HHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV---KAQ 85 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~ 85 (253)
..+..++..|..++..|+|.+|+..|++.+...|.+ +.+...+|.++++.|++..|+..+++.+...|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 467889999999999999999999999999998875 46899999999999999999999999999999865 589
Q ss_pred HHHHHHHHHhCC-----------HHHHHHHHHHHHhhchhcccchHHHHHHHH
Q psy11461 86 FFLGQALHEINH-----------YDEAVKHLQRAYDLSREQNLNYGDDIACQL 127 (253)
Q Consensus 86 ~~lg~~~~~~~~-----------~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 127 (253)
+.+|.+++.+.. ..+|+..|+..++..|++ .+..++...+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S--~y~~~A~~~l 133 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS--EYAEEAKKRL 133 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS--TTHHHHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc--hHHHHHHHHH
Confidence 999999877542 458999999999999997 3334443333
No 90
>KOG0550|consensus
Probab=98.99 E-value=2.8e-08 Score=84.51 Aligned_cols=111 Identities=16% Similarity=0.117 Sum_probs=98.9
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS------------YFTNRALCYLKLKQYVHCCDDCRKALE 76 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~------------~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (253)
.++.++.+++..|.+++-.++.+.|+.+|.+++.++|+... .+..+|.-.++.|+|..|...|..+|.
T Consensus 198 ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 198 LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 45677889999999999999999999999999999997543 477889999999999999999999999
Q ss_pred hCCCcH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461 77 LEPSLV----KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY 119 (253)
Q Consensus 77 l~p~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 119 (253)
++|+|. +.|.++|.+...+|+..+|+..+..|+.+++.-..++
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 999864 5689999999999999999999999999998864433
No 91
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=1.1e-07 Score=82.63 Aligned_cols=107 Identities=22% Similarity=0.182 Sum_probs=102.1
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 90 (253)
+....+++..+..++..|+++.|+..+...+...|+|+.++...+.++.+.++..+|.+.+++++.++|+..-...++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
++.+.|++.+|+..++..+.-+|+++.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~ 409 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPN 409 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCch
Confidence 999999999999999999999999854
No 92
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.97 E-value=1.2e-08 Score=76.76 Aligned_cols=94 Identities=13% Similarity=0.102 Sum_probs=82.1
Q ss_pred HHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461 41 IIKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY 119 (253)
Q Consensus 41 i~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 119 (253)
..+. ++.....+.+|..++..|++++|...|+.+..+||.+...|++||.|+..+|+|++|+..|.+|+.++|+++...
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3456 677788999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred HHHHHHHHHHHHHHH
Q psy11461 120 GDDIACQLRIAKKKR 134 (253)
Q Consensus 120 ~~~~~~~~~~~~~~~ 134 (253)
.......+...+...
T Consensus 107 ~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 107 WAAAECYLACDNVCY 121 (157)
T ss_pred HHHHHHHHHcCCHHH
Confidence 666665555544433
No 93
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.96 E-value=1.1e-08 Score=88.68 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=67.9
Q ss_pred CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhhCHHHHHHHHHHHHhhC
Q psy11461 6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS---YFTNRALCYLKLKQYVHCCDDCRKALELE 78 (253)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 78 (253)
....+|..+..+.++|..++..|+|++|+.+|+++|.++|+++. +|+|+|.||..+|++++|+.++++|+++.
T Consensus 67 ~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 67 GSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34577999999999999999999999999999999999999985 49999999999999999999999999983
No 94
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.95 E-value=3e-07 Score=87.18 Aligned_cols=110 Identities=13% Similarity=0.190 Sum_probs=83.2
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
+.+.....+..+|..+...|+|+.|++.|++++..+|+++.++..++.++...++.++|+..+.+++..+|.+... ..+
T Consensus 97 p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~l 175 (822)
T PRK14574 97 SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTL 175 (822)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHH
Confidence 3455566666677788888888888888888888888888888888888888888888888888888888875444 445
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNY 119 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 119 (253)
+.++...+++.+|+..++++++.+|++...+
T Consensus 176 ayL~~~~~~~~~AL~~~ekll~~~P~n~e~~ 206 (822)
T PRK14574 176 SYLNRATDRNYDALQASSEAVRLAPTSEEVL 206 (822)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCCCCHHHH
Confidence 5555556677668888888888888775443
No 95
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.94 E-value=6.8e-08 Score=83.79 Aligned_cols=107 Identities=21% Similarity=0.147 Sum_probs=101.2
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
...|+++..+-..|..++..++..+|++.+++++.++|..+.+..++|.+|++.|++.+|+..+...+.-+|+++..|..
T Consensus 334 ~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~ 413 (484)
T COG4783 334 AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDL 413 (484)
T ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHH
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 88 LGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
||++|-.+|+-.+|...+...+.+...
T Consensus 414 LAqay~~~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 414 LAQAYAELGNRAEALLARAEGYALAGR 440 (484)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence 999999999999999988888877654
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=2.2e-08 Score=86.52 Aligned_cols=107 Identities=14% Similarity=-0.072 Sum_probs=96.7
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH----
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV---- 82 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---- 82 (253)
.+..|.....+..+|..+...|++++|+..+.+++..+|+++.++..+|.++...|++++|+..+.+++...|.+.
T Consensus 107 ~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~ 186 (355)
T cd05804 107 APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRG 186 (355)
T ss_pred CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhH
Confidence 3566777888889999999999999999999999999999999999999999999999999999999999887432
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461 83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p 113 (253)
..+..+|.++...|++++|+..|.+++...|
T Consensus 187 ~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 187 HNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 3567899999999999999999999987666
No 97
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.93 E-value=6.3e-09 Score=90.27 Aligned_cols=69 Identities=16% Similarity=0.058 Sum_probs=66.2
Q ss_pred hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 43 KNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA---QFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 43 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a---~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
.+|+++.+++|+|.+|+++|+|++|+..|++|++++|++..+ |+++|.+|..+|++++|+.++++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 378899999999999999999999999999999999999865 999999999999999999999999998
No 98
>KOG1308|consensus
Probab=98.93 E-value=5.1e-10 Score=92.85 Aligned_cols=102 Identities=27% Similarity=0.412 Sum_probs=96.0
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL 92 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 92 (253)
.+...+..+...+..|.++.||+.|+.+|.++|..+.+|..+|.++++++++..|+.+|..|+.++|+..+.|-.+|.+.
T Consensus 113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~ 192 (377)
T KOG1308|consen 113 QANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE 192 (377)
T ss_pred HHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHH
Confidence 44556667888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhhchh
Q psy11461 93 HEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 93 ~~~~~~~~A~~~~~~al~l~p~ 114 (253)
..+|++++|..++..+.+++-+
T Consensus 193 rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 193 RLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred HHhhchHHHHHHHHHHHhcccc
Confidence 9999999999999999998754
No 99
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.90 E-value=4.2e-08 Score=79.72 Aligned_cols=102 Identities=19% Similarity=0.183 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc---HHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL---VKAQFF 87 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~ 87 (253)
+...++.|..++..|+|..|+..|..-+...|++ +.+++.||.+++.+|+|++|...|..+++-.|++ +.+++.
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4559999999999999999999999999999985 5789999999999999999999999999988775 567999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 88 LGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+|.|+..+|+.++|...|+++++..|+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999986
No 100
>PRK11906 transcriptional regulator; Provisional
Probab=98.89 E-value=3.8e-08 Score=85.60 Aligned_cols=110 Identities=9% Similarity=-0.053 Sum_probs=101.0
Q ss_pred CCCCCcccHHHHHHHHHHHHhc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461 6 NFTTNNLSDKELKDEGNRYFGL---------RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76 (253)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~---------g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (253)
+++-+|..+.++..++.+++.. ..-.+|.+...+|++++|.++.++..+|.++...++++.|...+++|+.
T Consensus 287 ~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~ 366 (458)
T PRK11906 287 KSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI 366 (458)
T ss_pred cccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh
Confidence 4567788899999999888654 2456788899999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 77 l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
++|+...+++..|.++...|+.++|.+.+++|++++|.-
T Consensus 367 L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 367 HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 999999999999999999999999999999999999984
No 101
>KOG2076|consensus
Probab=98.89 E-value=1.7e-07 Score=86.44 Aligned_cols=107 Identities=14% Similarity=0.075 Sum_probs=103.6
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
-.+|..+.+|+.+|.+|-++|+..++..+...|-.++|.+...|..+|....++|++..|.-+|.+||+.+|.+.+..+.
T Consensus 167 kqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~e 246 (895)
T KOG2076|consen 167 KQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYE 246 (895)
T ss_pred HhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHH
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 88 LGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
++..|.++|+...|...|.+.+.++|.
T Consensus 247 rs~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 247 RSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 999999999999999999999999994
No 102
>KOG1156|consensus
Probab=98.88 E-value=1e-06 Score=78.82 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE 94 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 94 (253)
..+|..+..++..++|...+...+..+...|.++......|..+..+|+-++|...++.++..|+.+.-.|..+|.++..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hCCHHHHHHHHHHHHhhchhcccc
Q psy11461 95 INHYDEAVKHLQRAYDLSREQNLN 118 (253)
Q Consensus 95 ~~~~~~A~~~~~~al~l~p~~~~~ 118 (253)
..+|++|+++|+.|+.++|+|...
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qi 111 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQI 111 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHH
Confidence 555555555555555555555433
No 103
>KOG3060|consensus
Probab=98.86 E-value=6.3e-07 Score=71.91 Aligned_cols=110 Identities=13% Similarity=0.047 Sum_probs=82.9
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 90 (253)
|.........|..+-..|.|++|+++|...+..+|.+...+-..-.+...+|+.-+|++.+..-++..+++..+|..++.
T Consensus 83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae 162 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE 162 (289)
T ss_pred CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 45566667777788888888888888888888888877777766666777777777777777777777777777777777
Q ss_pred HHHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSREQNLNYG 120 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 120 (253)
+|+..|+|+.|.-+++..+-+.|-++.-+.
T Consensus 163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~ 192 (289)
T KOG3060|consen 163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQ 192 (289)
T ss_pred HHHhHhHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 777777777777777777777777654443
No 104
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.86 E-value=1e-08 Score=67.77 Aligned_cols=61 Identities=28% Similarity=0.477 Sum_probs=58.9
Q ss_pred HHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 55 ALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 55 a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
..+|...++|++|+..+++++.++|+++..++.+|.++..+|++.+|+..|.++++.+|++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 5678999999999999999999999999999999999999999999999999999999986
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.85 E-value=4.4e-07 Score=85.73 Aligned_cols=112 Identities=13% Similarity=-0.013 Sum_probs=99.1
Q ss_pred CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH---
Q psy11461 6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV--- 82 (253)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~--- 82 (253)
...-+|.+..++..+...+...+++++|+.....++..+|+...+|+.+|..+++.+++.++... .++.+.+.+.
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~ 100 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWA 100 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchh
Confidence 34456888999999999999999999999999999999999999999999999999988877666 6666655555
Q ss_pred ----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461 83 ----------------KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY 119 (253)
Q Consensus 83 ----------------~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 119 (253)
.|++.+|.||-.+|++++|...|+++++++|+++..+
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aL 153 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIV 153 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHH
Confidence 8999999999999999999999999999999986543
No 106
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.84 E-value=9.2e-08 Score=74.29 Aligned_cols=75 Identities=15% Similarity=0.168 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461 45 PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL---VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY 119 (253)
Q Consensus 45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 119 (253)
+..+.+++++|.++...|++++|+.+|++++.+.|+. ..+++.+|.++..+|++++|+..+.+++++.|.+...+
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 4567789999999999999999999999999987763 56899999999999999999999999999999874443
No 107
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.84 E-value=1.7e-07 Score=72.52 Aligned_cols=97 Identities=10% Similarity=0.046 Sum_probs=81.5
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHh
Q psy11461 21 GNRYFGLRQYEEAINCYTRAIIKNPVI--PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL---VKAQFFLGQALHEI 95 (253)
Q Consensus 21 g~~~~~~g~~~~A~~~y~~ai~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~lg~~~~~~ 95 (253)
.+.+|-.+.|..+...+...+..++.. ..+++++|.++..+|++++|+..+++++.+.|+. ..+++++|.++...
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~ 85 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN 85 (168)
T ss_pred ccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc
Confidence 345566667777777786666666655 6678999999999999999999999999987763 45899999999999
Q ss_pred CCHHHHHHHHHHHHhhchhccc
Q psy11461 96 NHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 96 ~~~~~A~~~~~~al~l~p~~~~ 117 (253)
|++++|+..+.+++++.|....
T Consensus 86 g~~~eA~~~~~~Al~~~~~~~~ 107 (168)
T CHL00033 86 GEHTKALEYYFQALERNPFLPQ 107 (168)
T ss_pred CCHHHHHHHHHHHHHhCcCcHH
Confidence 9999999999999999887643
No 108
>KOG1840|consensus
Probab=98.84 E-value=4.4e-07 Score=81.11 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=95.1
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh-
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL- 77 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l- 77 (253)
-...|....+...+|..|+.+|+|+.|+..++.|+.. +|.-.....++|..|..++++.+|+..|.+|+.+
T Consensus 192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3456777888888999999999999999999999998 6666667777999999999999999999999987
Q ss_pred -------CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 78 -------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 78 -------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
+|....++.+||.+|...|++.+|..++.+|+++-..
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 3445678999999999999999999999999998665
No 109
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.83 E-value=7.7e-09 Score=69.35 Aligned_cols=65 Identities=29% Similarity=0.449 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC-------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461 48 PSYFTNRALCYLKLKQYVHCCDDCRKALELE-------PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 112 (253)
+.++.++|.+|..+|+|++|+.++++++.+. |....++.++|.++..+|++++|++++++++++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4455555555555555555555555555431 1123455666666666666666666666666553
No 110
>KOG1156|consensus
Probab=98.83 E-value=3.8e-07 Score=81.53 Aligned_cols=122 Identities=15% Similarity=0.064 Sum_probs=109.0
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
..|.....+-..|-.+...|+-++|..+...++..++.+..+|.-+|.++..-.+|++|+++|+.|+.++|+|...++-+
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl 115 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL 115 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 45666778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHH
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIA 130 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 130 (253)
+....++++++.....-.+.+++.|++...+..-+......+
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g 157 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLG 157 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997554444444433333
No 111
>KOG1840|consensus
Probab=98.82 E-value=2.2e-07 Score=83.06 Aligned_cols=105 Identities=28% Similarity=0.420 Sum_probs=91.1
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC--
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE-- 78 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-- 78 (253)
.++.-+..+..+|..|...++|.+|+..|.+|+.+ +|.-+.++.|+|.+|.+.|+|++|..+|++|+.+-
T Consensus 236 ~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 236 KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 34556667778999999999999999999999987 56667789999999999999999999999999873
Q ss_pred ------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461 79 ------PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 79 ------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p 113 (253)
|.-...+..++.++..++++++|+.++++++++.-
T Consensus 316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 33445688899999999999999999999999865
No 112
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.81 E-value=7.4e-09 Score=69.44 Aligned_cols=69 Identities=23% Similarity=0.396 Sum_probs=59.7
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK---N----PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE 78 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~---~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 78 (253)
+|..+..+.++|..++..|+|++|+.+|.+++.+ . |..+.++.++|.|+..+|++++|+..+++++++.
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3667889999999999999999999999999976 1 2235689999999999999999999999999863
No 113
>KOG3060|consensus
Probab=98.81 E-value=6.5e-07 Score=71.87 Aligned_cols=110 Identities=15% Similarity=0.000 Sum_probs=100.9
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 86 (253)
..++|.+...++..--....+|+-.+||+.+..-+...+.+..+|..++.+|+..|+|.+|.-++++.+-+.|-++..+.
T Consensus 113 L~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~ 192 (289)
T KOG3060|consen 113 LEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQ 192 (289)
T ss_pred hccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 45667888888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC---CHHHHHHHHHHHHhhchhcc
Q psy11461 87 FLGQALHEIN---HYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 87 ~lg~~~~~~~---~~~~A~~~~~~al~l~p~~~ 116 (253)
++|.+++-+| ++.-|.++|.++++++|.+.
T Consensus 193 rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 193 RLAEVLYTQGGAENLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence 9999988877 57889999999999999763
No 114
>KOG2003|consensus
Probab=98.80 E-value=1.4e-08 Score=87.32 Aligned_cols=112 Identities=14% Similarity=0.119 Sum_probs=103.9
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
.+.-++.++.+.||..|..|+++.|.+.|++|+..+.++..+++|.|..+..+|+.++|+.+|-+...+--++...++.+
T Consensus 485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qi 564 (840)
T KOG2003|consen 485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQI 564 (840)
T ss_pred ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44567888999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 120 (253)
+.+|-.+.+...|++.+.++..+-|+++..+.
T Consensus 565 aniye~led~aqaie~~~q~~slip~dp~ils 596 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSLIPNDPAILS 596 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhcccCCCCHHHHH
Confidence 99999999999999999999999998865443
No 115
>KOG1173|consensus
Probab=98.79 E-value=6.1e-08 Score=85.28 Aligned_cols=114 Identities=15% Similarity=0.158 Sum_probs=108.5
Q ss_pred CCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461 5 HNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA 84 (253)
Q Consensus 5 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (253)
++....|..+..|+..|..|+..|++.+|..+|.++..++|..+.+|...|..+.-.+..++|+..|.+|-++-|.....
T Consensus 303 ~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP 382 (611)
T KOG1173|consen 303 KLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP 382 (611)
T ss_pred HHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461 85 QFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN 118 (253)
Q Consensus 85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 118 (253)
.+.+|.-|..++++.-|.++|..|+.++|+++..
T Consensus 383 ~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv 416 (611)
T KOG1173|consen 383 SLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLV 416 (611)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchh
Confidence 9999999999999999999999999999998643
No 116
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.76 E-value=4e-07 Score=69.63 Aligned_cols=86 Identities=26% Similarity=0.346 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC----------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCC--
Q psy11461 30 YEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ----------YVHCCDDCRKALELEPSLVKAQFFLGQALHEINH-- 97 (253)
Q Consensus 30 ~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~-- 97 (253)
|+.|.+.|......+|.++..+++=|.+++.+.+ +++|+.-+++||.++|+...+++.+|.++..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6789999999999999999999999999988754 5678888999999999999999999999998863
Q ss_pred ---------HHHHHHHHHHHHhhchhc
Q psy11461 98 ---------YDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 98 ---------~~~A~~~~~~al~l~p~~ 115 (253)
|+.|..+|++|...+|++
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 788899999999999997
No 117
>KOG2002|consensus
Probab=98.76 E-value=1.8e-07 Score=86.85 Aligned_cols=113 Identities=14% Similarity=0.138 Sum_probs=99.8
Q ss_pred CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc-
Q psy11461 6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL- 81 (253)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~- 81 (253)
.+..++.++.++..+++.+|-.|+|..+...+..++...-.. +..++.+|.+|..+|+|++|..+|.+++..+|++
T Consensus 262 ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~ 341 (1018)
T KOG2002|consen 262 AYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNF 341 (1018)
T ss_pred HHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCc
Confidence 345678889999999999999999999999999998875433 4569999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461 82 VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN 118 (253)
Q Consensus 82 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 118 (253)
.-+++.+|+.++..|+++.|+.+|.++++..|++...
T Consensus 342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~et 378 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYET 378 (1018)
T ss_pred cccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHH
Confidence 8889999999999999999999999999999987543
No 118
>KOG1127|consensus
Probab=98.75 E-value=7.7e-07 Score=83.04 Aligned_cols=109 Identities=18% Similarity=0.215 Sum_probs=94.3
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHH------------------------------------HHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSY------------------------------------FTN 53 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~------------------------------------~~~ 53 (253)
++.-+-+|..+|..|...-+...|..+|.+|.++|+.++.+ |..
T Consensus 488 d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~ 567 (1238)
T KOG1127|consen 488 DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQ 567 (1238)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhh
Confidence 45567788889999988888999999999999998875543 555
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461 54 RALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN 118 (253)
Q Consensus 54 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 118 (253)
+|..|...+++..|+.+++.|+..+|++..+|..+|.+|...|.+..|++.|.+|..++|.+...
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 77777778888889999999999999999999999999999999999999999999999997543
No 119
>KOG1174|consensus
Probab=98.74 E-value=6.6e-07 Score=76.39 Aligned_cols=115 Identities=10% Similarity=0.018 Sum_probs=79.6
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
.-+.+...+..+|.+++..|++.+|+..|.++..++|.+.......|..+...|+++.-.......+..+.....-|+.-
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 34566777788888888888888888888888888888777766666666666666666666666666555555566666
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHH
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDI 123 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 123 (253)
|..++..+++..|+.+-.++++.+|.+..++.-..
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG 341 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKG 341 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhcc
Confidence 66666666677777777777777666654444333
No 120
>KOG2002|consensus
Probab=98.74 E-value=5e-07 Score=84.03 Aligned_cols=111 Identities=16% Similarity=0.172 Sum_probs=100.5
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC--CCcHHH
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE--PSLVKA 84 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--p~~~~a 84 (253)
...+|.+..+-...|.++-..|++..|+..|.+.......++++|.|+|.||+.+|+|..|++.|+.+++-. .++...
T Consensus 639 L~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v 718 (1018)
T KOG2002|consen 639 LRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV 718 (1018)
T ss_pred HhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 345677777778899999999999999999999988877788999999999999999999999999999864 467889
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 85 QFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
+..||.+++..|.+.+|.+.+.+|+.+.|.+..
T Consensus 719 l~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 999999999999999999999999999999865
No 121
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.74 E-value=2.5e-07 Score=62.55 Aligned_cols=67 Identities=28% Similarity=0.443 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 50 YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
+++++|.++...|++++|+..+.+++...|.+..+++.+|.++...+++++|+..|.+++...|.+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 5788999999999999999999999999999999999999999999999999999999999998864
No 122
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.72 E-value=3.8e-08 Score=64.01 Aligned_cols=58 Identities=28% Similarity=0.368 Sum_probs=54.6
Q ss_pred HHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 58 YLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 58 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+++.|+|++|+..|++++..+|++..+++.+|.|+...|++++|...+.+++..+|++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 3578999999999999999999999999999999999999999999999999999986
No 123
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.71 E-value=4.8e-07 Score=81.84 Aligned_cols=138 Identities=14% Similarity=0.064 Sum_probs=98.7
Q ss_pred CCcccHHHHHHHHHHHHhccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--------CHHHHHHHHHHHHhh
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQ---YEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK--------QYVHCCDDCRKALEL 77 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~---~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~l 77 (253)
+....+..++..|..++..+. +..|+.+|++|++.+|+++.++..++.+|.... ++..+.....+++.+
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 444567788889998887655 889999999999999999999999998886653 344566666676664
Q ss_pred --CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 78 --EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEI 147 (253)
Q Consensus 78 --~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (253)
+|..+.++.-+|..+...|++++|...+++|+.++|+ ...+..........++...+....++....+|
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 7777888888999988899999999999999999984 33333333333333444444433333333333
No 124
>PRK11906 transcriptional regulator; Provisional
Probab=98.71 E-value=5e-07 Score=78.73 Aligned_cols=133 Identities=11% Similarity=-0.038 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhccC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHh---------hCHHHHHHHHHHHHhhCCC
Q psy11461 16 ELKDEGNRYFGLRQ---YEEAINCYTRAI---IKNPVIPSYFTNRALCYLKL---------KQYVHCCDDCRKALELEPS 80 (253)
Q Consensus 16 ~~~~~g~~~~~~g~---~~~A~~~y~~ai---~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~l~p~ 80 (253)
.++..|...+..+. ...|..++.+|+ .++|..+.+|..+|.|+... ....+|....++|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 56788888866554 467889999999 99999999999999999875 2356889999999999999
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIE 148 (253)
Q Consensus 81 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (253)
++.++..+|.++...++++.|...|.+|+.++|+....+.-..+.....++........++..+..|-
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 99999999999999999999999999999999999777766666555555555555555554554444
No 125
>KOG1128|consensus
Probab=98.71 E-value=1.5e-07 Score=85.02 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH 93 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 93 (253)
+.+....|.-.+.+++|.++..+++.++.++|-....|+++|.|..+++++..|..+|.+++.++|++..+|.+++.+|.
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 33445566666778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHhhchhcccc
Q psy11461 94 EINHYDEAVKHLQRAYDLSREQNLN 118 (253)
Q Consensus 94 ~~~~~~~A~~~~~~al~l~p~~~~~ 118 (253)
.+++-.+|...+..|++.+.++...
T Consensus 565 ~~~~k~ra~~~l~EAlKcn~~~w~i 589 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCNYQHWQI 589 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCCCee
Confidence 9999999999999999998666543
No 126
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.71 E-value=1.1e-08 Score=67.66 Aligned_cols=40 Identities=38% Similarity=0.517 Sum_probs=32.3
Q ss_pred hchhcCCCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhcCc
Q psy11461 210 RRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDW 249 (253)
Q Consensus 210 ~~~~~g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n~w 249 (253)
....++..||+|+++++.++|+||.+||++|++|+.+|.|
T Consensus 34 ~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~~ 73 (73)
T PF04564_consen 34 WLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENKK 73 (73)
T ss_dssp HHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCTC
T ss_pred HHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHccC
Confidence 3334688999999999999999999999999999999988
No 127
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=9.9e-07 Score=69.39 Aligned_cols=109 Identities=21% Similarity=0.237 Sum_probs=103.5
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
++...+..++..|..|-..|-+.-|.-.|++++.++|.-+.+++-+|..+...|+|+.|.+.|..++++||.+-.++.++
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
|.+++.-|++.-|.+.+.+-.+-+|+++.
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 99999999999999999999999999854
No 128
>KOG0543|consensus
Probab=98.69 E-value=2.4e-07 Score=78.90 Aligned_cols=100 Identities=27% Similarity=0.319 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE 94 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 94 (253)
..+.+++.++.+.++|..|+....+++.++|.|+.+++.+|.++..+++|+.|+.+|++|++++|.|..+...+..+...
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999998888888888777
Q ss_pred hCCHHHH-HHHHHHHHhhchh
Q psy11461 95 INHYDEA-VKHLQRAYDLSRE 114 (253)
Q Consensus 95 ~~~~~~A-~~~~~~al~l~p~ 114 (253)
...+.+. .+.|.+.+...+.
T Consensus 338 ~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHHHHHHHHhhcccc
Confidence 6665554 6777777766554
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.69 E-value=3e-07 Score=79.98 Aligned_cols=95 Identities=21% Similarity=0.254 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE 94 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 94 (253)
.....++..++..++-.+|+..+.+++..+|.++.++...|..++..++++.|+..+++++.+.|.+...|+.|+.+|..
T Consensus 201 ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~ 280 (395)
T PF09295_consen 201 EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ 280 (395)
T ss_pred cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 35566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHH
Q psy11461 95 INHYDEAVKHLQRAY 109 (253)
Q Consensus 95 ~~~~~~A~~~~~~al 109 (253)
+|+++.|+..++.+-
T Consensus 281 ~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 281 LGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHhcCc
Confidence 999999998777543
No 130
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.65 E-value=4.3e-07 Score=82.15 Aligned_cols=108 Identities=14% Similarity=0.069 Sum_probs=91.3
Q ss_pred CCCcccHHHHHHHHHHHHhc--------cCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461 8 TTNNLSDKELKDEGNRYFGL--------RQYEEAINCYTRAIIK--NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~--------g~~~~A~~~y~~ai~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (253)
..+|..+.++-.++.++... ++...+.....+++.. +|.++.+|.-+|..+...|++++|...+++|+.+
T Consensus 370 ~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L 449 (517)
T PRK10153 370 KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL 449 (517)
T ss_pred HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 34677788877777766543 2345666666776664 7788899999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 78 EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 78 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
+| +..+|..+|.++...|++++|+..|.+|++++|..+
T Consensus 450 ~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 450 EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 99 578999999999999999999999999999999975
No 131
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.64 E-value=3.2e-06 Score=70.14 Aligned_cols=103 Identities=19% Similarity=0.265 Sum_probs=57.0
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh----------------------------------CCC-----CHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIK----------------------------------NPV-----IPSYFT 52 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~----------------------------------~p~-----~~~~~~ 52 (253)
....++..+|..|+..|-++.|+..|...+.. .+. .+.+|+
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC 184 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC 184 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 34455666666666666666666666655543 222 123455
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 53 NRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 53 ~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
.+|..+....+++.|...+.+|++-+|+++++-..+|.+....|+|+.|++.++.+++-+|+
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 55555555555555555555555555555555555555555555555555555555555554
No 132
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.62 E-value=5.2e-07 Score=64.92 Aligned_cols=78 Identities=13% Similarity=0.210 Sum_probs=69.8
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA 84 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (253)
+.++..+..++.+|..++..|+++.|+..|..++..+|.+ +.++.++|.++.+++++++|+..+.+++...|++..+
T Consensus 33 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 33 PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 3344557889999999999999999999999999998885 6789999999999999999999999999999998765
Q ss_pred H
Q psy11461 85 Q 85 (253)
Q Consensus 85 ~ 85 (253)
.
T Consensus 113 ~ 113 (119)
T TIGR02795 113 K 113 (119)
T ss_pred H
Confidence 4
No 133
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.2e-06 Score=72.26 Aligned_cols=106 Identities=16% Similarity=0.050 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhC---CHHHHHHHH
Q psy11461 29 QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEIN---HYDEAVKHL 105 (253)
Q Consensus 29 ~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~---~~~~A~~~~ 105 (253)
..+..+..++.-+..+|.++.-|..+|.+|+.+|++..|...|.+|+++.|+|+..+..+|.++.... .-.++...|
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 46677777888899999999999999999999999999999999999999999999999999987764 357899999
Q ss_pred HHHHhhchhcccchHHHHHHHHHHHHHHH
Q psy11461 106 QRAYDLSREQNLNYGDDIACQLRIAKKKR 134 (253)
Q Consensus 106 ~~al~l~p~~~~~~~~~~~~~~~~~~~~~ 134 (253)
+++++++|.+.....-.....+...+...
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~ 245 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAE 245 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHH
Confidence 99999999986555444444444444433
No 134
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.60 E-value=2.4e-06 Score=70.88 Aligned_cols=106 Identities=11% Similarity=0.092 Sum_probs=99.7
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH-HHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV-KAQFFL 88 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~l 88 (253)
.-.-|+.++.++..+....+++.|...+.+|++.+|+++.+-..+|.+....|+|..|++.++.+++.||+.. .+.-.|
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 4457889999999999999999999999999999999999999999999999999999999999999999864 678889
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
..||..+|+.++++..+.++.+..++.
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 999999999999999999999988775
No 135
>KOG2003|consensus
Probab=98.59 E-value=3.2e-06 Score=73.13 Aligned_cols=102 Identities=16% Similarity=0.101 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH 93 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 93 (253)
++.+.+++++|-...+..+||++|.++..+-|++|..+..+|..|-+-|+-..|.+++-......|.|....-+||.-|.
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HhCCHHHHHHHHHHHHhhchhc
Q psy11461 94 EINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 94 ~~~~~~~A~~~~~~al~l~p~~ 115 (253)
...-++.|+.+|++|--+.|+.
T Consensus 638 dtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred hhHHHHHHHHHHHHHHhcCccH
Confidence 4444455555555555454443
No 136
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.58 E-value=1.4e-06 Score=75.22 Aligned_cols=104 Identities=15% Similarity=0.096 Sum_probs=83.0
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHH-------------------------------------HHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSY-------------------------------------FTNR 54 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~-------------------------------------~~~~ 54 (253)
.........|..++..|+++.|+..+.+++..+|.+..+ +..+
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 120 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML 120 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHH
Confidence 345566778888888999999999888888877766533 3356
Q ss_pred HHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 55 ALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 55 a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
|.++..+|++++|+..+++++.++|++..++..+|.++...|++++|+..+.+++...|.+
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence 6677788888888888888888888888888888888888888888888888888887653
No 137
>KOG1129|consensus
Probab=98.56 E-value=1.2e-07 Score=78.71 Aligned_cols=103 Identities=15% Similarity=0.101 Sum_probs=63.3
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
.-|.+...+..++.++-..+++++|.++|+.+++.+|.+..+....|.-|+--++.+-|+.+|++.+.+.-.++..+.++
T Consensus 285 ~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Ni 364 (478)
T KOG1129|consen 285 SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNI 364 (478)
T ss_pred cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhH
Confidence 44667777888888888888888888888888888776555544444444444555555555555555544445555555
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l 111 (253)
|.|++.-++++-++..|.+|+..
T Consensus 365 gLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 365 GLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred HHHHHhhcchhhhHHHHHHHHhh
Confidence 55555555555555555555444
No 138
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.55 E-value=1.2e-07 Score=64.50 Aligned_cols=61 Identities=30% Similarity=0.402 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (253)
+...++.+|.++++.|+|..|+..+++ ...+|.++...+.+|.|++++|+|++|+..+.++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 566788899999999999999999999 8888888899999999999999999999999875
No 139
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.53 E-value=2e-06 Score=81.42 Aligned_cols=103 Identities=14% Similarity=-0.003 Sum_probs=87.5
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHhhCHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNP-------------------VIPSYFTNRALCYLKLKQYVHCCD 69 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p-------------------~~~~~~~~~a~~~~~~~~~~~A~~ 69 (253)
.+|.....++..|..+++.+++.++... .++...+ .+-.+++.+|.||-++|++++|..
T Consensus 60 ~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~ 137 (906)
T PRK14720 60 EHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKG 137 (906)
T ss_pred hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHH
Confidence 4567777888888888888777666555 4444444 444899999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 70 DCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 70 ~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
.++++++++|+|+.++.++|..|... +.++|+.++.+|+...-+
T Consensus 138 ~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 138 VWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999 999999999999987543
No 140
>KOG1128|consensus
Probab=98.52 E-value=1.4e-06 Score=79.05 Aligned_cols=107 Identities=17% Similarity=0.219 Sum_probs=101.3
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
-+|-....|+..|.++.+.++++.|..+|+.++.++|++..+|+|++.+|.++++-.+|...+.+|++-+-.+.+.|-+.
T Consensus 514 ~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENy 593 (777)
T KOG1128|consen 514 INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENY 593 (777)
T ss_pred cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeech
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
-.+....|.+++|++.+.+.+.+....
T Consensus 594 mlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 594 MLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred hhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 999999999999999999999886554
No 141
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.49 E-value=7.3e-06 Score=65.41 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=89.4
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhC-----------HHHHHHHHH
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP---SYFTNRALCYLKLKQ-----------YVHCCDDCR 72 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~ 72 (253)
.+.++....+.+.+|..+++.|+|..|+..|.+.+..+|.++ .+++.+|.+++.+.. ..+|+..++
T Consensus 35 ~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~ 114 (203)
T PF13525_consen 35 YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFE 114 (203)
T ss_dssp -TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHH
Confidence 467788889999999999999999999999999999999865 578899999877543 458999999
Q ss_pred HHHhhCCCcHHH-----------------HHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 73 KALELEPSLVKA-----------------QFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 73 ~al~l~p~~~~a-----------------~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
..+...|++..+ -+..|..|...|.|..|+..++.+++.-|+.
T Consensus 115 ~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t 174 (203)
T PF13525_consen 115 ELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDT 174 (203)
T ss_dssp HHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC
Confidence 999999987432 3446888999999999999999999999987
No 142
>KOG1174|consensus
Probab=98.49 E-value=2.7e-06 Score=72.72 Aligned_cols=77 Identities=13% Similarity=0.164 Sum_probs=56.3
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK 83 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (253)
+..++....++...|+.+.+.|+..+|+-.|+.|+.+.|.....|-.+-.||+..|++.+|.-..+.++..-|.+.+
T Consensus 327 I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~ 403 (564)
T KOG1174|consen 327 IDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR 403 (564)
T ss_pred hccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh
Confidence 34556667778888888888888888888888888888888888888888888877777766555544444333333
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.48 E-value=9.1e-06 Score=61.22 Aligned_cols=95 Identities=19% Similarity=0.134 Sum_probs=83.8
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc---HHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL---VKAQF 86 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~ 86 (253)
.+...+......+..+++..+...+...+..+|.. ..+...+|.+++..|++++|...|+.++...|+. ..+.+
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 45566777777788999999999999999999998 5678889999999999999999999999987654 45789
Q ss_pred HHHHHHHHhCCHHHHHHHHHH
Q psy11461 87 FLGQALHEINHYDEAVKHLQR 107 (253)
Q Consensus 87 ~lg~~~~~~~~~~~A~~~~~~ 107 (253)
++|.++...|++++|+..+..
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHh
Confidence 999999999999999999866
No 144
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.48 E-value=9.2e-06 Score=71.85 Aligned_cols=95 Identities=11% Similarity=-0.044 Sum_probs=46.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy11461 17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP-SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEI 95 (253)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~ 95 (253)
+...|..+..+|+++.|..+|.++.+..|.+. .+...++..+...|+++.|...+++.++..|+++.++..++.++...
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~ 200 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS 200 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 33444444455555555555555544444442 23333444555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhh
Q psy11461 96 NHYDEAVKHLQRAYDL 111 (253)
Q Consensus 96 ~~~~~A~~~~~~al~l 111 (253)
|++++|.+.+.+..+.
T Consensus 201 ~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 201 GAWQALDDIIDNMAKA 216 (409)
T ss_pred hhHHHHHHHHHHHHHc
Confidence 5555555555444443
No 145
>KOG4162|consensus
Probab=98.46 E-value=4.3e-06 Score=76.25 Aligned_cols=107 Identities=21% Similarity=0.138 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE 94 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 94 (253)
..|...|..+...+.-++|.-|+.++-.++|..+..|+.+|.++...|++.+|...|..|+.++|+++..+..+|.++..
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 45667788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHH--HHHHHHhhchhcccchHH
Q psy11461 95 INHYDEAVK--HLQRAYDLSREQNLNYGD 121 (253)
Q Consensus 95 ~~~~~~A~~--~~~~al~l~p~~~~~~~~ 121 (253)
.|+..-|.. .+..+++++|.++..+..
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 998888887 999999999998654443
No 146
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.45 E-value=7.5e-05 Score=60.50 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=96.6
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH---HH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP---SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV---KA 84 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a 84 (253)
...+..|++.|...++.|+|.+|+..|......+|.++ .+...++.++++.++++.|+...++-+.+.|+++ .+
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 44688999999999999999999999999999988754 6888999999999999999999999999998865 46
Q ss_pred HHHHHHHHHHhCC--------HHHHHHHHHHHHhhchhcccchHHHHHHHHHH
Q psy11461 85 QFFLGQALHEINH--------YDEAVKHLQRAYDLSREQNLNYGDDIACQLRI 129 (253)
Q Consensus 85 ~~~lg~~~~~~~~--------~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 129 (253)
+|..|.+++..=+ ..+|+..|...+.--|++ .+..+....+..
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS--~Ya~dA~~~i~~ 161 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS--RYAPDAKARIVK 161 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC--cchhhHHHHHHH
Confidence 8888999776532 467888999999999987 333444333333
No 147
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.44 E-value=1.7e-05 Score=70.12 Aligned_cols=117 Identities=9% Similarity=-0.005 Sum_probs=100.6
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH-HHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV-KAQFFLGQA 91 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~lg~~ 91 (253)
.+......|...+..|+|..|.+...++....|.....+...|.+...+|+++.|...+.++.+..|++. .+....+.+
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 4556677899999999999999999999999999888889999999999999999999999999999885 566667999
Q ss_pred HHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHH
Q psy11461 92 LHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRI 129 (253)
Q Consensus 92 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 129 (253)
+...|+++.|...+++.++..|+++....-.....+..
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~ 200 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS 200 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999865444333333333
No 148
>KOG1129|consensus
Probab=98.44 E-value=1.2e-06 Score=72.93 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=57.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCH
Q psy11461 19 DEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHY 98 (253)
Q Consensus 19 ~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~ 98 (253)
++|.+|++.|.+..|...++.++...|. ++.+..++.+|....+...|+..+...+...|.++..+...+.++-.++++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 4666666666666666666666665442 444555555555555566666666655555555555555555555555666
Q ss_pred HHHHHHHHHHHhhchhc
Q psy11461 99 DEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 99 ~~A~~~~~~al~l~p~~ 115 (253)
++|+++|+.+++++|.+
T Consensus 307 ~~a~~lYk~vlk~~~~n 323 (478)
T KOG1129|consen 307 EDALQLYKLVLKLHPIN 323 (478)
T ss_pred HHHHHHHHHHHhcCCcc
Confidence 66666666666555554
No 149
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.41 E-value=3.3e-05 Score=69.78 Aligned_cols=99 Identities=17% Similarity=0.092 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH 93 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 93 (253)
..+++-++..|-..|++++|+.+..+||...|+.+.+|...|.++...|++.+|...++.|-.+|+.+-..-...+..++
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999998888788888899
Q ss_pred HhCCHHHHHHHHHHHHhhc
Q psy11461 94 EINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 94 ~~~~~~~A~~~~~~al~l~ 112 (253)
..|+.++|.+.+..-.+-+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HCCCHHHHHHHHHhhcCCC
Confidence 9999999999888766554
No 150
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.41 E-value=1.5e-05 Score=70.30 Aligned_cols=92 Identities=13% Similarity=-0.020 Sum_probs=51.9
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHH
Q psy11461 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYF-TNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYD 99 (253)
Q Consensus 21 g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~ 99 (253)
+....+.|+++.|...|.++.+.+|++..+. ...+..+...|+++.|...++++++.+|+++.++..++.+|...|+++
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 3333556666666666666665555543222 223555556666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhhc
Q psy11461 100 EAVKHLQRAYDLS 112 (253)
Q Consensus 100 ~A~~~~~~al~l~ 112 (253)
+|+..+.+..+..
T Consensus 205 ~a~~~l~~l~k~~ 217 (398)
T PRK10747 205 SLLDILPSMAKAH 217 (398)
T ss_pred HHHHHHHHHHHcC
Confidence 6665555555443
No 151
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.40 E-value=6.3e-05 Score=68.01 Aligned_cols=47 Identities=21% Similarity=0.189 Sum_probs=31.8
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCY 58 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~ 58 (253)
+....+-..|..+++.|++++|...|...|..+|++..+|..+..|.
T Consensus 36 Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 36 DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 34455566777777777777777777777777777666666665555
No 152
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.40 E-value=3.3e-06 Score=69.95 Aligned_cols=78 Identities=6% Similarity=0.046 Sum_probs=70.5
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV---IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK 83 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (253)
.|.++..+.+++.+|..++..|+|++|+..|.+++..+|+ .+.+++.+|.++..+|++++|+..|+++++..|++..
T Consensus 173 yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 173 YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 4555666789999999999999999999999999999887 4678999999999999999999999999999998865
Q ss_pred H
Q psy11461 84 A 84 (253)
Q Consensus 84 a 84 (253)
+
T Consensus 253 a 253 (263)
T PRK10803 253 A 253 (263)
T ss_pred H
Confidence 4
No 153
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.38 E-value=9.3e-07 Score=52.30 Aligned_cols=42 Identities=29% Similarity=0.199 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461 49 SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90 (253)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 90 (253)
.++..+|.+|..+|++++|+..++++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345566666666666666666666666666666666666553
No 154
>KOG1310|consensus
Probab=98.36 E-value=1.6e-06 Score=76.21 Aligned_cols=107 Identities=31% Similarity=0.301 Sum_probs=97.8
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHhhCCCcHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK---QYVHCCDDCRKALELEPSLVKAQ 85 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~~~a~ 85 (253)
.-|.....++..|+..+..+.+..|+..|.+++...|....++.|+|.++++.+ +.-.|+.+|..|+.++|...++|
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah 448 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH 448 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence 446678889999999999999999999999999999999999999999999854 56679999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 86 FFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 86 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
++++.++..++++.+|+.+...+....|.+
T Consensus 449 ~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 449 FRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 999999999999999999988888778854
No 155
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.34 E-value=5.2e-07 Score=50.19 Aligned_cols=32 Identities=31% Similarity=0.438 Sum_probs=17.6
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHH
Q psy11461 71 CRKALELEPSLVKAQFFLGQALHEINHYDEAV 102 (253)
Q Consensus 71 ~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~ 102 (253)
|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555553
No 156
>KOG0495|consensus
Probab=98.33 E-value=6.2e-05 Score=68.02 Aligned_cols=119 Identities=15% Similarity=0.089 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEI 95 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~ 95 (253)
.|...++.....+..++|+.++..+++..|+.+.+|..+|.++-++++.+.|...|...++..|..+..|..++.+--..
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence 33344444444444444444444444444544445555555554445555454444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHH
Q psy11461 96 NHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKR 134 (253)
Q Consensus 96 ~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~ 134 (253)
|..-.|...+.++.-.+|.+..-+...|...++.+....
T Consensus 733 ~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred cchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHH
Confidence 444444444444444444444444444444444433333
No 157
>KOG1127|consensus
Probab=98.33 E-value=1.2e-05 Score=75.35 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE 94 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 94 (253)
..|..+|-.+...+++.+|+..++.|+..+|.+..+|..+|.+|...|++.-|++.|.+|..++|.+..+.|..+.....
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 35666899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHhhch
Q psy11461 95 INHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 95 ~~~~~~A~~~~~~al~l~p 113 (253)
+|+|.+|+..+...+....
T Consensus 643 ~GkYkeald~l~~ii~~~s 661 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFS 661 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 9999999999888776543
No 158
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.33 E-value=4.6e-05 Score=67.19 Aligned_cols=116 Identities=9% Similarity=-0.025 Sum_probs=91.2
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHhhCHHHHHHHHHHHHhhCCCcHHHH-HHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNR-ALCYLKLKQYVHCCDDCRKALELEPSLVKAQ-FFLGQ 90 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~-a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~-~~lg~ 90 (253)
.+...+..|...+..|+|+.|++...++-...+ ++..++.+ |.+..+.|+++.|...+.++.+.+|++..+. ...+.
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~ 161 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVR 161 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 456677889999999999999988887665433 35555555 6666999999999999999999999986444 45599
Q ss_pred HHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHH
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRI 129 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 129 (253)
.+...|+++.|...++++++.+|+++....-.....++.
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999865544444333333
No 159
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.31 E-value=6.7e-07 Score=49.74 Aligned_cols=33 Identities=33% Similarity=0.506 Sum_probs=31.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHH
Q psy11461 36 CYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCC 68 (253)
Q Consensus 36 ~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~ 68 (253)
+|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 489999999999999999999999999999986
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.31 E-value=3.5e-05 Score=63.22 Aligned_cols=109 Identities=16% Similarity=0.127 Sum_probs=89.9
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhh------------------CHH
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP---SYFTNRALCYLKLK------------------QYV 65 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~---~~~~~~a~~~~~~~------------------~~~ 65 (253)
.+..+....+.+.+|..+++.++|.+|+..|++.+..+|+++ .+++.+|.++..++ ...
T Consensus 62 yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~ 141 (243)
T PRK10866 62 YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHAR 141 (243)
T ss_pred CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHH
Confidence 445556667789999999999999999999999999998764 57889999875554 135
Q ss_pred HHHHHHHHHHhhCCCcHHH-----------------HHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 66 HCCDDCRKALELEPSLVKA-----------------QFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 66 ~A~~~~~~al~l~p~~~~a-----------------~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+|+..+++.+...|++..+ -+..|.-|...|.|..|+.-++.+++--|+.
T Consensus 142 ~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t 208 (243)
T PRK10866 142 AAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT 208 (243)
T ss_pred HHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC
Confidence 7889999999999987532 2345777889999999999999999998886
No 161
>PRK15331 chaperone protein SicA; Provisional
Probab=98.26 E-value=3.7e-05 Score=58.33 Aligned_cols=92 Identities=11% Similarity=-0.033 Sum_probs=78.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHH
Q psy11461 44 NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDI 123 (253)
Q Consensus 44 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 123 (253)
.++.....+..|.-++..|++++|...|+-..-.+|.+.+.++.||.|+..+++|++|+..|..|.-++++++.......
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 44455678889999999999999999999999999999999999999999999999999999999999999987766555
Q ss_pred HHHHHHHHHHHH
Q psy11461 124 ACQLRIAKKKRW 135 (253)
Q Consensus 124 ~~~~~~~~~~~~ 135 (253)
...+...+...+
T Consensus 113 qC~l~l~~~~~A 124 (165)
T PRK15331 113 QCQLLMRKAAKA 124 (165)
T ss_pred HHHHHhCCHHHH
Confidence 555555444433
No 162
>KOG2376|consensus
Probab=98.26 E-value=9.4e-05 Score=66.00 Aligned_cols=119 Identities=15% Similarity=0.172 Sum_probs=93.8
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC-----------------
Q psy11461 17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP----------------- 79 (253)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p----------------- 79 (253)
.+..+.++|+.++.++|+.+++ ..++.+..+...+|.+++++++|++|...|+..++.+.
T Consensus 82 ~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~ 158 (652)
T KOG2376|consen 82 FFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA 158 (652)
T ss_pred hHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 3789999999999999999999 56677777899999999999999999999988865432
Q ss_pred -------------C-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc---ccchHHHHHHHHHHHHHHHHHHH
Q psy11461 80 -------------S-LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ---NLNYGDDIACQLRIAKKKRWAET 138 (253)
Q Consensus 80 -------------~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~~~~~ 138 (253)
. +..-+|+.|-++...|+|.+|++.+.+|++++... .+...+++...+..++-..+...
T Consensus 159 l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 159 LQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred hhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 1 34558999999999999999999999998887652 12224666666666555544433
No 163
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.25 E-value=2.3e-06 Score=47.44 Aligned_cols=31 Identities=29% Similarity=0.532 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC
Q psy11461 50 YFTNRALCYLKLKQYVHCCDDCRKALELEPS 80 (253)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 80 (253)
+|+++|.+|..+|++++|+.+|++|++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 3444444444444444444444444444443
No 164
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.24 E-value=3.1e-06 Score=50.01 Aligned_cols=42 Identities=24% Similarity=0.177 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRAL 56 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~ 56 (253)
..+..+|..+...|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 568899999999999999999999999999999999999885
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.24 E-value=0.00029 Score=54.47 Aligned_cols=102 Identities=14% Similarity=0.196 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC--cHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIK-NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS--LVKAQFFLGQ 90 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~lg~ 90 (253)
..-.+.+|+.+...|++.+|...|.+++.- .-.++..+..+|.+.+..+++..|...+++..+-+|. ++..+..+|.
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 445678999999999999999999999864 5678899999999999999999999999999999886 5778899999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
++...|++.+|...|+.++...|+.
T Consensus 169 ~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 169 TLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred HHHhcCCchhHHHHHHHHHHhCCCH
Confidence 9999999999999999999998874
No 166
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.22 E-value=2.1e-05 Score=66.17 Aligned_cols=119 Identities=16% Similarity=0.042 Sum_probs=84.0
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK--QYVHCCDDCRKALELEPSLVKAQFFLGQ 90 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l~p~~~~a~~~lg~ 90 (253)
+.......-.++.+.++++.|...++..-+.+.+........|.+.+..| .+.+|.-.|+......+.++..+..+|.
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~ 209 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV 209 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 34455556677888888888888888887776665444444444444455 5888999999987777888899999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHH
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAK 131 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~ 131 (253)
|+..+|+|++|...+..++..+|.++..+...+......++
T Consensus 210 ~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 210 CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999998886666555554444433
No 167
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.22 E-value=8.6e-06 Score=68.53 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461 16 ELKDEGNRYFGLR--QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH 93 (253)
Q Consensus 16 ~~~~~g~~~~~~g--~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 93 (253)
.....+...+..| ++.+|.-.|.+.....+.++..++.+|.|+..+|+|++|...+.+++..+|+++.++.++..+..
T Consensus 167 ~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~ 246 (290)
T PF04733_consen 167 TQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL 246 (290)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 3333444555544 69999999999888888999999999999999999999999999999999999999999999999
Q ss_pred HhCCH-HHHHHHHHHHHhhchhc
Q psy11461 94 EINHY-DEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 94 ~~~~~-~~A~~~~~~al~l~p~~ 115 (253)
.+|+. +.+.+++.+....+|++
T Consensus 247 ~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 247 HLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HhCCChhHHHHHHHHHHHhCCCC
Confidence 99998 66777888888888876
No 168
>KOG4234|consensus
Probab=98.19 E-value=1.6e-05 Score=61.89 Aligned_cols=74 Identities=28% Similarity=0.392 Sum_probs=68.0
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA 84 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (253)
...+-.|.+.|-++++.+++..||...++||.++|.+-.++..||.+|-++.+|++|+.+|.++++++|....+
T Consensus 131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 34566788899999999999999999999999999999999999999999999999999999999999976544
No 169
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.16 E-value=4.9e-06 Score=46.10 Aligned_cols=34 Identities=32% Similarity=0.586 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 82 VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 82 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+++|+++|.++..+|++++|+.+|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 170
>KOG4648|consensus
Probab=98.16 E-value=9.3e-06 Score=68.10 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHH
Q psy11461 51 FTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDD 122 (253)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 122 (253)
.-.+|.-|+++|+|++|+.+|.+++.++|-|+-.+.++|.+|+.+++|..|...+..|+.++.....++...
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR 171 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRR 171 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999999999999999987654444433
No 171
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.12 E-value=3.1e-05 Score=59.42 Aligned_cols=76 Identities=21% Similarity=0.244 Sum_probs=58.8
Q ss_pred CCcccHHHHHHHHHHHHhcc----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-----------HHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLR----------QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ-----------YVHC 67 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g----------~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~-----------~~~A 67 (253)
.+|.++..+.+-|..+.... -+++|+.-|.+||.++|+...++.++|.+|..++. |++|
T Consensus 20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 46788999999888886553 45678888999999999999999999999998664 8889
Q ss_pred HHHHHHHHhhCCCcHHH
Q psy11461 68 CDDCRKALELEPSLVKA 84 (253)
Q Consensus 68 ~~~~~~al~l~p~~~~a 84 (253)
..+|++|+..+|+|.-.
T Consensus 100 ~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 100 TEYFQKAVDEDPNNELY 116 (186)
T ss_dssp HHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHhcCCCcHHH
Confidence 99999999999988543
No 172
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.12 E-value=3.2e-05 Score=57.37 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=70.3
Q ss_pred CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhC---------------HHHH
Q psy11461 6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP---SYFTNRALCYLKLKQ---------------YVHC 67 (253)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~---~~~~~~a~~~~~~~~---------------~~~A 67 (253)
-.|..+-..++...+|..+++.|+|.+|+..|.+-|+++|.++ .+++.+|.+++.+.. ...|
T Consensus 39 ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A 118 (142)
T PF13512_consen 39 RYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQA 118 (142)
T ss_pred cCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHH
Confidence 3456677788999999999999999999999999999999875 579999999999887 8899
Q ss_pred HHHHHHHHhhCCCcHHH
Q psy11461 68 CDDCRKALELEPSLVKA 84 (253)
Q Consensus 68 ~~~~~~al~l~p~~~~a 84 (253)
..+|.++|...|++..+
T Consensus 119 ~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 119 FRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHCcCChhH
Confidence 99999999999998654
No 173
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.12 E-value=2.5e-05 Score=63.72 Aligned_cols=82 Identities=13% Similarity=0.270 Sum_probs=74.9
Q ss_pred CCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc
Q psy11461 5 HNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL 81 (253)
Q Consensus 5 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (253)
+-+|.++..+.++|.+|..+|.+|+|.+|...|..+++..|++ ++.++.+|.|...+|+.++|...++++++..|..
T Consensus 169 ~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 169 KKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 3467888899999999999999999999999999999998765 5789999999999999999999999999999998
Q ss_pred HHHHH
Q psy11461 82 VKAQF 86 (253)
Q Consensus 82 ~~a~~ 86 (253)
..+..
T Consensus 249 ~aA~~ 253 (262)
T COG1729 249 DAAKL 253 (262)
T ss_pred HHHHH
Confidence 77654
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.10 E-value=5.6e-05 Score=63.46 Aligned_cols=105 Identities=18% Similarity=0.118 Sum_probs=82.6
Q ss_pred ccHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC----
Q psy11461 12 LSDKELKDEGNRYFGL-RQYEEAINCYTRAIIKNPV------IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS---- 80 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~-g~~~~A~~~y~~ai~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---- 80 (253)
..+..+..+|..|... |+++.|+++|.+|+..... -..++.+.|.++.++|+|++|+..|+++....-+
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 4577888999999998 9999999999999987321 1346788999999999999999999999875322
Q ss_pred --cH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 81 --LV-KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 81 --~~-~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
+. ..++..+.|++..|++..|...+.+....+|.-.
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 22 3456788899999999999999999999998753
No 175
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.10 E-value=9.5e-06 Score=44.77 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=7.8
Q ss_pred HHHHHHhhCHHHHHHHHHHHHhh
Q psy11461 55 ALCYLKLKQYVHCCDDCRKALEL 77 (253)
Q Consensus 55 a~~~~~~~~~~~A~~~~~~al~l 77 (253)
|.++..+|++++|+.++++++.+
T Consensus 8 g~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 8 GQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 176
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.07 E-value=0.0002 Score=53.83 Aligned_cols=96 Identities=22% Similarity=0.125 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCC----------------------CHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPV----------------------IPSYFTNRALCYLKLKQYVHCCDDCRK 73 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~ 73 (253)
.+...|......|+...++..+.+++.+... ...+...++..+...|++++|+..+.+
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3444577778889999999999999988421 113466678888899999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 74 ALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 74 al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
++.++|-+-.++..+-.++...|+..+|++.|.+..+.
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988654
No 177
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.06 E-value=1.3e-05 Score=44.18 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI 47 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~ 47 (253)
|..++.+|..++..|+|++|+.+|.+++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 5679999999999999999999999999999975
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.05 E-value=0.00038 Score=50.56 Aligned_cols=67 Identities=22% Similarity=0.187 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 49 SYFTNRALCYLKLKQYVHCCDDCRKALELEPS---LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.+.+++|.++-.+|+.++|+..|++++..... -..++..+|.++..+|++++|+..+++++...|++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 47889999999999999999999999997544 35789999999999999999999999999988874
No 179
>KOG0495|consensus
Probab=98.03 E-value=0.0006 Score=61.90 Aligned_cols=122 Identities=15% Similarity=-0.041 Sum_probs=109.5
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
-|.....|..+|.++-++++.+.|.+.|...+...|.+..+|..++..--+.|....|...+.++.--+|.+...|...-
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~I 760 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESI 760 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHH
Confidence 35667789999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHH
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAK 131 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~ 131 (253)
..-+..|+.+.|.....+||+-+|++..-+.+.|+..-+-.+
T Consensus 761 r~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 761 RMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 888899999999999999999999987666666665443333
No 180
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.99 E-value=0.0002 Score=62.62 Aligned_cols=105 Identities=18% Similarity=0.175 Sum_probs=89.3
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHH
Q psy11461 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDE 100 (253)
Q Consensus 21 g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~ 100 (253)
-..+...++++.|+..+++....+|. ....+|.++...++-.+|++.+.+++...|.+...+...+..+...++++.
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 34445578999999999999998876 556689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhchhcccchHHHHHHHHH
Q psy11461 101 AVKHLQRAYDLSREQNLNYGDDIACQLR 128 (253)
Q Consensus 101 A~~~~~~al~l~p~~~~~~~~~~~~~~~ 128 (253)
|+...+++..+.|++...+......++.
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La~~Yi~ 280 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLAECYIQ 280 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 9999999999999985554444433333
No 181
>KOG3785|consensus
Probab=97.94 E-value=5.8e-05 Score=63.71 Aligned_cols=103 Identities=28% Similarity=0.301 Sum_probs=82.0
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh--------------hC
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE--------------LE 78 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--------------l~ 78 (253)
....-..+|.++|..|+|++|...|+-+...+..++.++.|+|.|++-+|.|.+|.....++-+ ++
T Consensus 56 E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 56 EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 3455667899999999999999999999998878889999999999999999999888766532 11
Q ss_pred C------------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 79 P------------SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 79 p------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
. +...-...+|.+++..-.|.+|+..|.+++.-+|+-
T Consensus 136 dEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred cHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 1 112224456777777788999999999999888774
No 182
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.89 E-value=0.0075 Score=51.76 Aligned_cols=107 Identities=10% Similarity=0.024 Sum_probs=89.0
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC-CcHHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP-SLVKAQFFLGQA 91 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p-~~~~a~~~lg~~ 91 (253)
.+......|-.-+..|+|..|+....++-+..+.....|..-|.+--++|+++.+-.++.++-++.+ ++......++..
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarl 162 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARL 162 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 3555666788888899999999999998887777777788888888899999999999999998843 355677888899
Q ss_pred HHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461 92 LHEINHYDEAVKHLQRAYDLSREQNLNY 119 (253)
Q Consensus 92 ~~~~~~~~~A~~~~~~al~l~p~~~~~~ 119 (253)
+...|+++.|...+.++++..|.++...
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr~~~vl 190 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPRHPEVL 190 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcCChHHH
Confidence 9999999999999999999999875433
No 183
>KOG1130|consensus
Probab=97.86 E-value=2.8e-05 Score=66.73 Aligned_cols=103 Identities=17% Similarity=0.259 Sum_probs=84.8
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh----CCCc-
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV------IPSYFTNRALCYLKLKQYVHCCDDCRKALEL----EPSL- 81 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l----~p~~- 81 (253)
...++-++||.|+-.|+|+.||..-+.-+.+... .-.++.|+|.|+.-+|+++.|+++|++.+.+ ....
T Consensus 194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v 273 (639)
T KOG1130|consen 194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV 273 (639)
T ss_pred hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH
Confidence 3456778999999999999999998877766332 3468999999999999999999999987654 3333
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 82 -VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 82 -~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
....|.||..|.-+..++.|+.++.+-+.+..+-
T Consensus 274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL 308 (639)
T KOG1130|consen 274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL 308 (639)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999887653
No 184
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.83 E-value=0.00079 Score=53.39 Aligned_cols=108 Identities=14% Similarity=0.080 Sum_probs=86.7
Q ss_pred CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHH
Q psy11461 6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ 85 (253)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 85 (253)
...-.|+.+..+.-+|..+...|+|+.|.+.|...++++|.+-.++.|||.+++--|++.-|.+++.+-..-||+++-.-
T Consensus 91 aLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~ 170 (297)
T COG4785 91 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRS 170 (297)
T ss_pred hhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999988654
Q ss_pred HHHHHHHHHhCCHHHHHH-HHHHHHhhchh
Q psy11461 86 FFLGQALHEINHYDEAVK-HLQRAYDLSRE 114 (253)
Q Consensus 86 ~~lg~~~~~~~~~~~A~~-~~~~al~l~p~ 114 (253)
..+-..-.+ -+..+|.. ..+++..++.+
T Consensus 171 LWLYl~E~k-~dP~~A~tnL~qR~~~~d~e 199 (297)
T COG4785 171 LWLYLNEQK-LDPKQAKTNLKQRAEKSDKE 199 (297)
T ss_pred HHHHHHHhh-CCHHHHHHHHHHHHHhccHh
Confidence 433222222 24555543 44555555544
No 185
>KOG4555|consensus
Probab=97.80 E-value=0.00075 Score=49.20 Aligned_cols=65 Identities=23% Similarity=0.214 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 51 FTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+-..|.+....|+.+.|++.|.+++.+.|.++.+|.++++++.-+|+.++|+..+++|+++..+.
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 44568888899999999999999999999999999999999999999999999999999997664
No 186
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.79 E-value=0.00062 Score=48.61 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=74.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh-------CCC
Q psy11461 20 EGNRYFGLRQYEEAINCYTRAIIKNPV------------IPSYFTNRALCYLKLKQYVHCCDDCRKALEL-------EPS 80 (253)
Q Consensus 20 ~g~~~~~~g~~~~A~~~y~~ai~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-------~p~ 80 (253)
.|...+..|-|++|...|.+|+....+ ++.++..++.++..+|+|++++....+++.. +.+
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd 94 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD 94 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence 455667789999999999999987432 3457888999999999999999999888854 444
Q ss_pred ----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461 81 ----LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 81 ----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p 113 (253)
.+.+.+.+|.++-.+|+.++|+..|+++-++-.
T Consensus 95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999987643
No 187
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.75 E-value=0.0006 Score=57.25 Aligned_cols=103 Identities=19% Similarity=0.220 Sum_probs=80.7
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC-----
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNP--V----IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS----- 80 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p--~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----- 80 (253)
..+..+...|+.|...|+|.+|..+|.++....- . -+..|.+.|.+|.+. ++++|+.++.+|+.+.-.
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~ 111 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS 111 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH
Confidence 3466777888888899999999999999987632 1 234677778887666 999999999999987321
Q ss_pred -cHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhchhc
Q psy11461 81 -LVKAQFFLGQALHEI-NHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 81 -~~~a~~~lg~~~~~~-~~~~~A~~~~~~al~l~p~~ 115 (253)
-.+++..+|.+|... |++++|+++|++|+.+....
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e 148 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE 148 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 246788999999998 99999999999999986654
No 188
>KOG1130|consensus
Probab=97.75 E-value=0.00014 Score=62.56 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=85.7
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC------C
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIK----NPV--IPSYFTNRALCYLKLKQYVHCCDDCRKALELEP------S 80 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~----~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p------~ 80 (253)
.-.++.++||++.-.|+|+.|+++|+..+.+ ... .+...+.+|..|.-+..+..||.+..+-+.+.. .
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3457788999999999999999999987655 222 455678899999999999999999988776643 2
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 81 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
-..+++.||.++..+|..+.|+.+....+++..+-
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev 348 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELHLRSSLEV 348 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999988876654
No 189
>KOG2796|consensus
Probab=97.75 E-value=0.0013 Score=53.67 Aligned_cols=107 Identities=12% Similarity=0.079 Sum_probs=93.9
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK----NP--VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV 82 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~----~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (253)
.++..+.....+|...++.|+.+.|..+++..-+. +. .......|.+.+|...++|.+|...+.+.+..||.++
T Consensus 207 ~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~ 286 (366)
T KOG2796|consen 207 YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA 286 (366)
T ss_pred CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch
Confidence 34677888889999999999999999999844322 22 2445778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.+..+.|.|+..+|+..+|++.+..++...|..
T Consensus 287 ~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 287 VANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 999999999999999999999999999999985
No 190
>KOG2053|consensus
Probab=97.75 E-value=0.0016 Score=61.02 Aligned_cols=132 Identities=14% Similarity=0.060 Sum_probs=100.8
Q ss_pred HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHH
Q psy11461 22 NRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEA 101 (253)
Q Consensus 22 ~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A 101 (253)
......++|..|.....+.++.+|+...+....|..+.++|+.++|..+++..-.+.+++...+-.+-.||..++++++|
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 44567899999999999999999999999999999999999999999777777777788888999999999999999999
Q ss_pred HHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 102 VKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLN 154 (253)
Q Consensus 102 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 154 (253)
..+|+++...+|+ -..+.......++....+......-+..+..|...-++-
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfW 148 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFW 148 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHH
Confidence 9999999999998 334444444444444333333222233333444444443
No 191
>KOG4642|consensus
Probab=97.71 E-value=0.0001 Score=59.02 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=60.5
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461 53 NRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN 118 (253)
Q Consensus 53 ~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 118 (253)
.-|.+|+.-.+|..|+.+|.+||.++|..+..+.+.+.|++++.+++.+....++|+++.|+....
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~ 80 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKA 80 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHH
Confidence 346777788899999999999999999999999999999999999999999999999999997443
No 192
>KOG2396|consensus
Probab=97.69 E-value=0.0061 Score=53.91 Aligned_cols=91 Identities=14% Similarity=0.062 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhh
Q psy11461 33 AINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINH-YDEAVKHLQRAYDL 111 (253)
Q Consensus 33 A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~l 111 (253)
-...|+.|+...+.++.+|.+...-..+.+.+.+.-..|.+++..+|+++..|...|.-.+..+. .+.|...|.++++.
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 34569999999999999999998888888889999999999999999999999999988888776 99999999999999
Q ss_pred chhcccchHHHH
Q psy11461 112 SREQNLNYGDDI 123 (253)
Q Consensus 112 ~p~~~~~~~~~~ 123 (253)
+|+++.-+..-.
T Consensus 170 npdsp~Lw~eyf 181 (568)
T KOG2396|consen 170 NPDSPKLWKEYF 181 (568)
T ss_pred CCCChHHHHHHH
Confidence 999855444333
No 193
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.60 E-value=0.00013 Score=40.08 Aligned_cols=30 Identities=27% Similarity=0.584 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461 84 AQFFLGQALHEINHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p 113 (253)
+|+.+|.++..+|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344444444444444444444444444444
No 194
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.59 E-value=0.00018 Score=39.57 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc
Q psy11461 49 SYFTNRALCYLKLKQYVHCCDDCRKALELEPSL 81 (253)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (253)
.+|+.+|.+|..+|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578999999999999999999999999999854
No 195
>KOG1915|consensus
Probab=97.57 E-value=0.042 Score=48.60 Aligned_cols=103 Identities=12% Similarity=0.043 Sum_probs=94.5
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL 92 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 92 (253)
+...|...|.--..+++++.|...|.+|+..+..+..+|...+.+-++......|...+.+|+.+-|.-.+.||..-..-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 34456667777778899999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHhCCHHHHHHHHHHHHhhchhc
Q psy11461 93 HEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 93 ~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
-.+|+...|.+.|.+.+...|+.
T Consensus 152 E~LgNi~gaRqiferW~~w~P~e 174 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDE 174 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcH
Confidence 88999999999999999999985
No 196
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.56 E-value=0.0055 Score=47.50 Aligned_cols=100 Identities=26% Similarity=0.291 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH-
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAII--KNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ- 90 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~- 90 (253)
.......+..+...+.+..++..+..++. ..+.....+...+.++...+.+..++..+..++..++.+.......+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 44455555666666666666666666655 455555566666666666666666666666666655555444444444
Q ss_pred HHHHhCCHHHHHHHHHHHHhhch
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p 113 (253)
++...|+++.|...+.+++...|
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Confidence 56666666666666666655444
No 197
>KOG2376|consensus
Probab=97.54 E-value=0.0044 Score=55.71 Aligned_cols=97 Identities=21% Similarity=0.200 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHH---------------------------------HHHHHHHHHh
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYF---------------------------------TNRALCYLKL 61 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~---------------------------------~~~a~~~~~~ 61 (253)
..++.--+.+...|+|++|.....+.+...|++.+++ +..|.|.+++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 4566666677777777777777777777766655443 4556666666
Q ss_pred hCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 62 KQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 62 ~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
++.++|+.++. .+++.+.......|++++.+|+|++|+..|+...+-+.+
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d 142 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD 142 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence 66666666665 445556667777777777777777777777777665443
No 198
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.54 E-value=0.0012 Score=57.12 Aligned_cols=129 Identities=14% Similarity=0.219 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCC--------CC----------HHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNP--------VI----------PSYFTNRALCYLKLKQYVHCCDDCRKALEL 77 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p--------~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (253)
+-..-|..+|++++|..|+..|..|+.+.. .. +..-..+..||+++++.+-|+....+.|-+
T Consensus 178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l 257 (569)
T PF15015_consen 178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL 257 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence 344466778899999999999999887732 11 134567899999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 78 EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIEL 149 (253)
Q Consensus 78 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (253)
+|.+...+.+.|.|...+.+|.+|-+.+--+.-+.=-+ ......+...-+..|....++.+.+.+.+
T Consensus 258 nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~-----g~~~q~~S~lIklyWqamiEeAiTr~esf 324 (569)
T PF15015_consen 258 NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLS-----GGSEQRISKLIKLYWQAMIEEAITRAESF 324 (569)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCchHhHHHHHHHHHHHHHHHHHhcccce
Confidence 99999999999999999999999988777665432110 00111122234456766666666554443
No 199
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.53 E-value=0.0014 Score=56.13 Aligned_cols=101 Identities=15% Similarity=0.031 Sum_probs=77.4
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL 92 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 92 (253)
++......+..+...|++++|.+....++...-+.. +.... -....+++..-++..++.++.+|+++..++.||..+
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~--~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~ 338 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLI--PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLA 338 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHH--hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 455566688888999999999999999988743322 22222 233567788888888888888888888888888888
Q ss_pred HHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 93 HEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 93 ~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
+..+.|.+|..+|+.|+...|+..
T Consensus 339 ~k~~~w~kA~~~leaAl~~~~s~~ 362 (400)
T COG3071 339 LKNKLWGKASEALEAALKLRPSAS 362 (400)
T ss_pred HHhhHHHHHHHHHHHHHhcCCChh
Confidence 888888888888888888888753
No 200
>KOG4340|consensus
Probab=97.53 E-value=0.0018 Score=53.71 Aligned_cols=105 Identities=26% Similarity=0.303 Sum_probs=58.6
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh----------h---
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE----------L--- 77 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------l--- 77 (253)
|.+-..+..+|.+|+...+|..|-.||.+.-...|....+..-.|..+++.+.+..|+........ +
T Consensus 41 p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaA 120 (459)
T KOG4340|consen 41 PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAA 120 (459)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 333445555666666666666666666666666666666555556666666665555544322211 1
Q ss_pred -----------------CC--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 78 -----------------EP--SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 78 -----------------~p--~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
-| +......+.|-+.++.|+|++|++-|+.|++...-+
T Consensus 121 IkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 121 IKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 11 223334445555666666777777777776665544
No 201
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.51 E-value=0.0021 Score=45.46 Aligned_cols=92 Identities=20% Similarity=0.287 Sum_probs=72.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhC-----------HHHHHHHHHHHHhhCCCcHHHH
Q psy11461 20 EGNRYFGLRQYEEAINCYTRAIIKNPVIP---SYFTNRALCYLKLKQ-----------YVHCCDDCRKALELEPSLVKAQ 85 (253)
Q Consensus 20 ~g~~~~~~g~~~~A~~~y~~ai~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~l~p~~~~a~ 85 (253)
.+..++++|++-.|++..+..+..++.+. .++..-|.++.++.. .-.+++++.++..+.|.....+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57789999999999999999999988766 556666888766543 4468888889999988887777
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 86 FFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 86 ~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
+.+|.-+-....|++++.-.+++|.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 77777766666677777777777654
No 202
>KOG2796|consensus
Probab=97.51 E-value=0.0027 Score=51.84 Aligned_cols=131 Identities=12% Similarity=0.172 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh----hC--CCcHHHHHHH
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKALE----LE--PSLVKAQFFL 88 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----l~--p~~~~a~~~l 88 (253)
..+.+.+++...|.|.-....|.+.+..+ |..+.+...+|.+..+.|+.+.|...++++-+ ++ ..+.-.+.+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45668888999999999999999999998 67899999999999999999999999995543 33 2345567778
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQE 146 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (253)
+.++...+++.+|...|.+.+..+|.++......+...+-..+...+....+....+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8888889999999999999999999987766666666555555555544444333333
No 203
>KOG1586|consensus
Probab=97.49 E-value=0.013 Score=47.05 Aligned_cols=104 Identities=14% Similarity=0.229 Sum_probs=65.4
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNP------VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV 82 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (253)
...+.+..+..-||.|...++|..|=..|-++-..+- +.+..|..-+.||.+ .++.+|+.++.+++.+..+-.
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~G 107 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMG 107 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhh
Confidence 3344455555666666667777777777777765521 134456666666644 377888888888877765432
Q ss_pred ------HHHHHHHHHHHH-hCCHHHHHHHHHHHHhhch
Q psy11461 83 ------KAQFFLGQALHE-INHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 83 ------~a~~~lg~~~~~-~~~~~~A~~~~~~al~l~p 113 (253)
+.+..+|.+|-. +.+++.|+.+|+.|-+.-.
T Consensus 108 rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 108 RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 234466766643 4677777777777766644
No 204
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.49 E-value=0.0014 Score=58.91 Aligned_cols=103 Identities=19% Similarity=0.138 Sum_probs=70.7
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH-
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV----IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA- 84 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a- 84 (253)
-|+.+..++..|..+...|+.++|++.|++++..... ...+++.+|.|+.-+++|++|..++.+.++.+.= .++
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~ 341 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAF 341 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHH
Confidence 4666777777888888888888888888877743222 2346777888888888888888888877775433 333
Q ss_pred -HHHHHHHHHHhCCH-------HHHHHHHHHHHhhch
Q psy11461 85 -QFFLGQALHEINHY-------DEAVKHLQRAYDLSR 113 (253)
Q Consensus 85 -~~~lg~~~~~~~~~-------~~A~~~~~~al~l~p 113 (253)
.|..|.|+..+|+. ++|...|.++-.+-.
T Consensus 342 Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 342 YAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 34457777777777 666666666665543
No 205
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0066 Score=50.35 Aligned_cols=100 Identities=20% Similarity=0.182 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH----------------------
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRK---------------------- 73 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~---------------------- 73 (253)
.-+..+......|++.+|...+..++...|.+..+...+|.||...|+.+.|...+..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 3456777889999999999999999999999999999999999999999877766532
Q ss_pred ------------HHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 74 ------------ALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 74 ------------al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.+.-+|++..+-+.+|..+...|+.++|.+.+-..++.+.+.
T Consensus 216 aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 216 AAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 122278899999999999999999999999888888876654
No 206
>KOG4340|consensus
Probab=97.48 E-value=0.0011 Score=55.07 Aligned_cols=86 Identities=17% Similarity=0.313 Sum_probs=78.9
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHH
Q psy11461 23 RYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAV 102 (253)
Q Consensus 23 ~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~ 102 (253)
.+.+..+|.+||++..--.+.+|.+...+..+|.||+...+|..|..+|++.-.+.|...+..+..++.++..+.+.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHH
Q psy11461 103 KHLQRA 108 (253)
Q Consensus 103 ~~~~~a 108 (253)
......
T Consensus 99 rV~~~~ 104 (459)
T KOG4340|consen 99 RVAFLL 104 (459)
T ss_pred HHHHHh
Confidence 765543
No 207
>KOG3785|consensus
Probab=97.45 E-value=0.0079 Score=51.18 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=74.0
Q ss_pred HHHHhccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHH
Q psy11461 22 NRYFGLRQYEEAINCYTRAIIKNPVI-PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDE 100 (253)
Q Consensus 22 ~~~~~~g~~~~A~~~y~~ai~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~ 100 (253)
..+..+.+|..|+..+.-....+... ...-..+|.|++.+|+|++|...|.-+..-+..+.+.+.++|-|++.+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 45677899999999998887665433 35666789999999999999999999999887888999999999999999999
Q ss_pred HHHHHHHH
Q psy11461 101 AVKHLQRA 108 (253)
Q Consensus 101 A~~~~~~a 108 (253)
|.....+|
T Consensus 110 A~~~~~ka 117 (557)
T KOG3785|consen 110 AKSIAEKA 117 (557)
T ss_pred HHHHHhhC
Confidence 98766554
No 208
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.44 E-value=0.0049 Score=47.83 Aligned_cols=97 Identities=24% Similarity=0.353 Sum_probs=86.4
Q ss_pred HHHHH-HHHhccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHH
Q psy11461 18 KDEGN-RYFGLRQYEEAINCYTRAIIKNP---VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS-LVKAQFFLGQAL 92 (253)
Q Consensus 18 ~~~g~-~~~~~g~~~~A~~~y~~ai~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~ 92 (253)
...+. .++..|+++.|+..|.+++..+| .....+..++..+...+++..++..+.+++...+. ....+..++.++
T Consensus 133 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 133 ALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence 33444 89999999999999999998777 46677777888888999999999999999999999 799999999999
Q ss_pred HHhCCHHHHHHHHHHHHhhchh
Q psy11461 93 HEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 93 ~~~~~~~~A~~~~~~al~l~p~ 114 (253)
...+++..|...+..++...|.
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcc
Confidence 9999999999999999999987
No 209
>KOG0546|consensus
Probab=97.37 E-value=0.00051 Score=57.98 Aligned_cols=116 Identities=28% Similarity=0.286 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCC-----------C--------CHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNP-----------V--------IPSYFTNRALCYLKLKQYVHCCDDCRKAL 75 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p-----------~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al 75 (253)
...++.|+..++.++|..|..-|.++...-. + -...+.|.+.|-++.+.+..|+..+..++
T Consensus 223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~ 302 (372)
T KOG0546|consen 223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL 302 (372)
T ss_pred hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence 4566788899999999999999999876521 1 12357788999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHH
Q psy11461 76 ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRW 135 (253)
Q Consensus 76 ~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~ 135 (253)
..++...+++|+++.++..+.++++|++.+..+....|++ ..|...+...+.+.+
T Consensus 303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d-----~~i~~~~~~~~~~~~ 357 (372)
T KOG0546|consen 303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPND-----KAIEEELENVRQKKK 357 (372)
T ss_pred ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcch-----HHHHHHHHHhhhHHH
Confidence 9999999999999999999999999999999999999997 344444444444433
No 210
>KOG0545|consensus
Probab=97.37 E-value=0.0043 Score=50.15 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--------CCC----------cHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy11461 48 PSYFTNRALCYLKLKQYVHCCDDCRKALEL--------EPS----------LVKAQFFLGQALHEINHYDEAVKHLQRAY 109 (253)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--------~p~----------~~~a~~~lg~~~~~~~~~~~A~~~~~~al 109 (253)
..+....|.-+++.|+|.+|...|+.|+.. .|. +...+.+.++|++..|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 356788899999999999999999998754 232 33468899999999999999999999999
Q ss_pred hhchhcccc
Q psy11461 110 DLSREQNLN 118 (253)
Q Consensus 110 ~l~p~~~~~ 118 (253)
+.+|.+..+
T Consensus 258 ~~~~~nvKA 266 (329)
T KOG0545|consen 258 RHHPGNVKA 266 (329)
T ss_pred hcCCchHHH
Confidence 999998443
No 211
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.34 E-value=0.00014 Score=46.37 Aligned_cols=29 Identities=38% Similarity=0.655 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCCCCCCcCcHHHHHHHHHH
Q psy11461 215 GHFDPVTRVKLSADQLIPNFAMKEVVDNF 243 (253)
Q Consensus 215 g~~DP~tr~~l~~~~l~pN~~lk~a~~~~ 243 (253)
+..||+|+++++.++++||..||++|++|
T Consensus 35 ~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 35 HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 35799999999999999999999999976
No 212
>KOG0376|consensus
Probab=97.31 E-value=0.00025 Score=62.11 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=79.8
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
.-+|..+..+-+.+..+++.++|..|+.-..+||+.+|....+|..+|.++..++++.+|..+++....+.|+.+.+...
T Consensus 32 ~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 32 ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHH
Confidence 34667777888889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHH
Q psy11461 88 LGQALHE 94 (253)
Q Consensus 88 lg~~~~~ 94 (253)
+..|-..
T Consensus 112 ~~Ec~~~ 118 (476)
T KOG0376|consen 112 IDECNKI 118 (476)
T ss_pred HHHHHHH
Confidence 8777543
No 213
>KOG0551|consensus
Probab=97.30 E-value=0.01 Score=50.04 Aligned_cols=73 Identities=18% Similarity=0.351 Sum_probs=66.6
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 80 (253)
++..-++..|.+++-+.+..|+|..|+...++++..+|.+..++..-|.|++.+.++.+|..+|+..+.++.+
T Consensus 113 ~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 113 ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 3445578889999999999999999999999999999999999999999999999999999999999877643
No 214
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.28 E-value=0.0022 Score=60.69 Aligned_cols=105 Identities=10% Similarity=-0.031 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV--IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA 91 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 91 (253)
...+..+...+.+.|.+++|..+|.......+- +...|..+..+|.+.|++++|.+.+++.- ..| +...|..+..+
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a 503 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTA 503 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHH
Confidence 455667777777788888888888777654322 33466777777777777777777766542 223 34557777777
Q ss_pred HHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461 92 LHEINHYDEAVKHLQRAYDLSREQNLNYG 120 (253)
Q Consensus 92 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 120 (253)
+...|+++.|...+++.+.+.|++...+.
T Consensus 504 ~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred HHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 77777777777777777777776544433
No 215
>PRK10941 hypothetical protein; Provisional
Probab=97.26 E-value=0.0048 Score=51.27 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 49 SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
....|+=.+|...++|+.|+.+.+..+.++|+++.-+.-+|.+|.++|.+..|...++..++.+|+++.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 467778888888999999999999999999999988888999999999999999999999999988744
No 216
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.25 E-value=0.00072 Score=37.84 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 84 AQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
++.++|.+|..+|+|++|+.+|++++.+..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4667888888888888888888886665544
No 217
>PRK10941 hypothetical protein; Provisional
Probab=97.23 E-value=0.0049 Score=51.22 Aligned_cols=77 Identities=19% Similarity=0.132 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA 91 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 91 (253)
..+.++=..+.+.++++.|+.+....+.++|+++.-+.-||.+|.++|.+..|..+++.-++..|+.+.+-....++
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 34555667889999999999999999999999999999999999999999999999999999999998887655444
No 218
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.23 E-value=0.011 Score=49.56 Aligned_cols=101 Identities=15% Similarity=-0.018 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK-LKQYVHCCDDCRKALELEPSLVKAQFFLGQALH 93 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 93 (253)
.+|..+.+...+.+..+.|...|.+|....+....+|...|..-+. .++.+-|...|+.+++..|.+...|.....-+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3577788888888889999999999996666678899999999777 566666999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHhhchhc
Q psy11461 94 EINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 94 ~~~~~~~A~~~~~~al~l~p~~ 115 (253)
..++.+.|...|++++..-|..
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~ 103 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKE 103 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCH
T ss_pred HhCcHHHHHHHHHHHHHhcCch
Confidence 9999999999999999886654
No 219
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.22 E-value=0.00076 Score=36.56 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=10.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461 86 FFLGQALHEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 86 ~~lg~~~~~~~~~~~A~~~~~~al~l~ 112 (253)
+.+|.++...|++++|+..|+++++..
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 333333333333333333333333333
No 220
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.20 E-value=0.038 Score=45.09 Aligned_cols=109 Identities=14% Similarity=0.181 Sum_probs=89.2
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHh--------hCHHHHHHHHHHHH
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP---SYFTNRALCYLKL--------KQYVHCCDDCRKAL 75 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~---~~~~~~a~~~~~~--------~~~~~A~~~~~~al 75 (253)
.+.+|-..++...++..+++.++|+.|+....+-+.++|.++ -+++.+|.+++.. .-...|+..+...|
T Consensus 64 ~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i 143 (254)
T COG4105 64 HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELV 143 (254)
T ss_pred CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHH
Confidence 456677788999999999999999999999999999998865 4688888888763 33678999999999
Q ss_pred hhCCCcHHH-----------------HHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 76 ELEPSLVKA-----------------QFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 76 ~l~p~~~~a-----------------~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
...|++.-+ =+..|.-|.+.|.+..|+.-++.+++--|+.
T Consensus 144 ~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t 200 (254)
T COG4105 144 QRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT 200 (254)
T ss_pred HHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence 999986432 1335777888899999999999999886664
No 221
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.20 E-value=0.00077 Score=36.53 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc
Q psy11461 49 SYFTNRALCYLKLKQYVHCCDDCRKALELEPSL 81 (253)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (253)
.+++++|.|+.++|++++|+..+++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 368899999999999999999999999999975
No 222
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.19 E-value=0.011 Score=44.84 Aligned_cols=87 Identities=13% Similarity=0.008 Sum_probs=78.5
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA 91 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 91 (253)
.....+..........++.+++...+...-.+.|..+.+-..-|..+...|+|.+|+..++.+..-.|..+.+--.++.|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 34557788888889999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred HHHhCCH
Q psy11461 92 LHEINHY 98 (253)
Q Consensus 92 ~~~~~~~ 98 (253)
+..+|+.
T Consensus 88 L~~~~D~ 94 (160)
T PF09613_consen 88 LYALGDP 94 (160)
T ss_pred HHHcCCh
Confidence 9888875
No 223
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.19 E-value=0.0024 Score=39.10 Aligned_cols=35 Identities=31% Similarity=0.385 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHH
Q psy11461 51 FTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ 85 (253)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 85 (253)
++.+|..++++|+|.+|...++.+++++|+|..+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 34444444455555555555555555555444443
No 224
>KOG3824|consensus
Probab=97.18 E-value=0.0019 Score=53.80 Aligned_cols=79 Identities=15% Similarity=0.064 Sum_probs=50.6
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
...+..-...+....+.|+.+.|...|..|+.+.|+++.++...|...-.-++.-+|-.+|-+|+.++|.|.+|+.+++
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3344445555556666666666666666666666666666666666666666666666666666666666666666554
No 225
>KOG2471|consensus
Probab=97.18 E-value=0.0015 Score=57.52 Aligned_cols=115 Identities=14% Similarity=0.009 Sum_probs=90.0
Q ss_pred CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461 6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRA-IIKNPV--------IPSYFTNRALCYLKLKQYVHCCDDCRKALE 76 (253)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~a-i~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (253)
++......+..++..++.++..|+|..|.+.+... |...|. ...+|+|+|.++++++.|.-+...|.+|+.
T Consensus 232 vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~ 311 (696)
T KOG2471|consen 232 VMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR 311 (696)
T ss_pred hhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH
Confidence 34444577888899999999999999999887543 222232 234678999999999999999999999996
Q ss_pred h---------CC---------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461 77 L---------EP---------SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120 (253)
Q Consensus 77 l---------~p---------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 120 (253)
- .| .+....|++|..|...|+.-.|.++|.++...-..++.-+.
T Consensus 312 N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWL 373 (696)
T KOG2471|consen 312 NSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWL 373 (696)
T ss_pred HHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHH
Confidence 1 11 24567999999999999999999999999998777754433
No 226
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.15 E-value=0.047 Score=42.54 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=84.4
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV--IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
-..++..+..+++..|..+++..|...+.+..+.+|. .++.....|.++..+|++.+|...++.++.-.|. +.+...
T Consensus 120 fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~ 198 (251)
T COG4700 120 FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIY 198 (251)
T ss_pred cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHH
Confidence 3456788899999999999999999999999999885 5667778899999999999999999999998774 466667
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Q psy11461 88 LGQALHEINHYDEAVKHLQRAYD 110 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al~ 110 (253)
.+.-+..+|+..+|..-+.....
T Consensus 199 Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 199 YAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcchhHHHHHHHHHHH
Confidence 78889999988888766555443
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.14 E-value=0.0048 Score=46.21 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (253)
..+..++..+...|+++.|+..+.+++..+|.+-.+|..+-.+|..+|+..+|+..|.+...
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45666888889999999999999999999999999999999999999999999999988754
No 228
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.11 E-value=0.01 Score=46.31 Aligned_cols=99 Identities=12% Similarity=-0.023 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC-cHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPS-LVKAQFFLG 89 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-~~~a~~~lg 89 (253)
......++..++..|+++.|+..++.++....+. +.+-.++|.+.+.+|.+++|+..+..... +. .....-.+|
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrG 166 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRG 166 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhh
Confidence 4456778899999999999999999998653321 34567789999999999999988866543 22 123356789
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
.++...|+-.+|...|.+++...++
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHccCC
Confidence 9999999999999999999998754
No 229
>KOG3081|consensus
Probab=97.10 E-value=0.029 Score=45.98 Aligned_cols=117 Identities=16% Similarity=0.098 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHh---------------------------CCCCHHHHHHHHHHHHHh----hC
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIK---------------------------NPVIPSYFTNRALCYLKL----KQ 63 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~---------------------------~p~~~~~~~~~a~~~~~~----~~ 63 (253)
.....-|..+...|+|++|.........+ +-++-.....+|.++.+. ++
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchh
Confidence 34445566777778888887776553211 111222334445444442 23
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHH
Q psy11461 64 YVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAK 131 (253)
Q Consensus 64 ~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~ 131 (253)
+.+|.-.|+..-.-.|.++......+.|+..+|+|++|...++.++..+++++..+...+......++
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 55555555555554555666677788899999999999999999999998887666666655544443
No 230
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.09 E-value=0.031 Score=55.25 Aligned_cols=94 Identities=14% Similarity=-0.011 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHH
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL--EPSLVKAQFFLGQAL 92 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~ 92 (253)
.+..+...|.+.|++++|.+.|......+ +.+...|..+...|.+.|++++|+..|.+.... .| +...|..+..++
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~ 659 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVA 659 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Confidence 34444444555555555555555544443 223444445555555555555555555544432 22 233444444445
Q ss_pred HHhCCHHHHHHHHHHHHh
Q psy11461 93 HEINHYDEAVKHLQRAYD 110 (253)
Q Consensus 93 ~~~~~~~~A~~~~~~al~ 110 (253)
...|++++|.+.+....+
T Consensus 660 ~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HhCCCHHHHHHHHHHHHH
Confidence 555555555555555444
No 231
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.07 E-value=0.0013 Score=34.54 Aligned_cols=30 Identities=40% Similarity=0.533 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy11461 50 YFTNRALCYLKLKQYVHCCDDCRKALELEP 79 (253)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 79 (253)
++.++|.++..+++++.|+.++.+++.++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555444
No 232
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.06 E-value=0.014 Score=55.26 Aligned_cols=96 Identities=13% Similarity=-0.044 Sum_probs=79.4
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC--CcHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP--SLVKAQFFLG 89 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--~~~~a~~~lg 89 (253)
+...|..+...|.+.|++++|++.|.+..... .-+...|..+..++.+.|.+++|...++...+..+ -+...|..+.
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 45678899999999999999999999988753 22456688888889999999999999999876432 2445788888
Q ss_pred HHHHHhCCHHHHHHHHHHH
Q psy11461 90 QALHEINHYDEAVKHLQRA 108 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~a 108 (253)
.++...|++++|.+.+++.
T Consensus 470 ~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC
Confidence 9999999999999998764
No 233
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.04 E-value=0.039 Score=54.54 Aligned_cols=98 Identities=13% Similarity=-0.028 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh----hCCCcHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKALE----LEPSLVKAQFFL 88 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----l~p~~~~a~~~l 88 (253)
...|..+...|.+.|++++|+..|....... ..+...|..+..+|.+.|++++|...+.+... +.|+ ...|..+
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaL 585 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGAL 585 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHH
Confidence 4455556666666666666666666654432 12345566666666666666666666666543 2232 3445555
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~ 112 (253)
-.+|...|++++|.+.|....+.+
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC
Confidence 555666666666666666665543
No 234
>KOG3081|consensus
Probab=97.03 E-value=0.016 Score=47.42 Aligned_cols=100 Identities=17% Similarity=0.200 Sum_probs=83.4
Q ss_pred HHHHHHHHHH----hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461 16 ELKDEGNRYF----GLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA 91 (253)
Q Consensus 16 ~~~~~g~~~~----~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 91 (253)
.+.++|..+. ..+++.+|.-.|+..-...|..+......|.|++.+++|++|...++.++.-+++++..+.++-.+
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~ 250 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVL 250 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3444555443 356789999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHH-HHHHHHHhhchhc
Q psy11461 92 LHEINHYDEAV-KHLQRAYDLSREQ 115 (253)
Q Consensus 92 ~~~~~~~~~A~-~~~~~al~l~p~~ 115 (253)
...+|...++. +.+.+....+|+.
T Consensus 251 a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 251 ALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHhCCChHHHHHHHHHHHhcCCcc
Confidence 99999876665 4555555566665
No 235
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.03 E-value=0.0014 Score=36.63 Aligned_cols=25 Identities=36% Similarity=0.593 Sum_probs=13.3
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHH
Q psy11461 17 LKDEGNRYFGLRQYEEAINCYTRAI 41 (253)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~y~~ai 41 (253)
+..+|+.+...|+|++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 236
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.03 E-value=0.013 Score=51.95 Aligned_cols=95 Identities=17% Similarity=0.113 Sum_probs=66.7
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC------------------
Q psy11461 18 KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP------------------ 79 (253)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p------------------ 79 (253)
...-....+..+...-++.-.+|+.++|+++++|..+|.-. ..-..+|...++++++...
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 34556677888888899999999999998888888776532 2224555555555554311
Q ss_pred -----C--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 80 -----S--LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 80 -----~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
. .+.+.+++|.|..++|+.++|++.++..++..|.
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~ 291 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN 291 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc
Confidence 0 1234567888888888888888888888887775
No 237
>KOG2471|consensus
Probab=96.99 E-value=0.0012 Score=58.10 Aligned_cols=82 Identities=13% Similarity=0.040 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh---------C---------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIK---------N---------PVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~---------~---------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 75 (253)
-..|.++|.++|+.|.|..++.+|.+|++- . .....+.+|.|..|+..|++-.|.++|.+++
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 345678999999999999999999999961 1 1245689999999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHh
Q psy11461 76 ELEPSLVKAQFFLGQALHEI 95 (253)
Q Consensus 76 ~l~p~~~~a~~~lg~~~~~~ 95 (253)
.....|+..|.++|.|+...
T Consensus 363 ~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999998754
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.96 E-value=0.038 Score=49.81 Aligned_cols=89 Identities=13% Similarity=0.038 Sum_probs=77.5
Q ss_pred hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHhCCHHHH
Q psy11461 26 GLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS----LVKAQFFLGQALHEINHYDEA 101 (253)
Q Consensus 26 ~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~~~lg~~~~~~~~~~~A 101 (253)
.......|.+.+.......|+.+...+..|..+...|+.++|+..+++++..... ..-.++.+|.++..+++|++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3557788999999999999999999999999999999999999999999864433 234688899999999999999
Q ss_pred HHHHHHHHhhchh
Q psy11461 102 VKHLQRAYDLSRE 114 (253)
Q Consensus 102 ~~~~~~al~l~p~ 114 (253)
..+|.+..+.+.-
T Consensus 325 ~~~f~~L~~~s~W 337 (468)
T PF10300_consen 325 AEYFLRLLKESKW 337 (468)
T ss_pred HHHHHHHHhcccc
Confidence 9999999986543
No 239
>PLN03077 Protein ECB2; Provisional
Probab=96.96 E-value=0.013 Score=56.93 Aligned_cols=102 Identities=9% Similarity=-0.058 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNP--VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH 93 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 93 (253)
.+..+-..+.+.|.+++|..+|.......+ .+...|..+..++.+.|++++|...+++. .+.|+ ...|..+-.++.
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~ 668 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACR 668 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHH
Confidence 345555667777888888888877764432 23456777777888888888887777664 24443 445555555666
Q ss_pred HhCCHHHHHHHHHHHHhhchhcccch
Q psy11461 94 EINHYDEAVKHLQRAYDLSREQNLNY 119 (253)
Q Consensus 94 ~~~~~~~A~~~~~~al~l~p~~~~~~ 119 (253)
..|+.+.|....++++++.|++...+
T Consensus 669 ~~~~~e~~e~~a~~l~~l~p~~~~~y 694 (857)
T PLN03077 669 IHRHVELGELAAQHIFELDPNSVGYY 694 (857)
T ss_pred HcCChHHHHHHHHHHHhhCCCCcchH
Confidence 67777777777777777777765443
No 240
>KOG4814|consensus
Probab=96.90 E-value=0.016 Score=52.82 Aligned_cols=96 Identities=20% Similarity=0.262 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI------PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
.+.+.|..+|+..+|..+++.|...+...|++ +....+++.||+++.+.+.|.+.+..|-+.+|.++-..+..-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 46678889999999999999999999887753 457889999999999999999999999999999998888888
Q ss_pred HHHHHhCCHHHHHHHHHHHHhh
Q psy11461 90 QALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l 111 (253)
.+....+.-++|+.+..+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 8888899999999888776654
No 241
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.89 E-value=0.018 Score=56.17 Aligned_cols=101 Identities=16% Similarity=0.082 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC-----
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNP--------VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS----- 80 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----- 80 (253)
...+..+|..++..|+++.|...+.+++.... .....+..+|.++...|++++|...+.+++.+...
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 34667788899999999999999999887621 12345667899999999999999999999876332
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 81 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
...++..+|.++...|++++|...+.++..+.+.
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~ 644 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGN 644 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 3456777899999999999999999999876443
No 242
>KOG1070|consensus
Probab=96.87 E-value=0.089 Score=52.12 Aligned_cols=107 Identities=18% Similarity=-0.008 Sum_probs=76.7
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-CC-------------------------------------CCHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK-NP-------------------------------------VIPSY 50 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-~p-------------------------------------~~~~~ 50 (253)
.+|..+..|..+--.+...++.+.|.+...+|+.. ++ +-...
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V 1532 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTV 1532 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHH
Confidence 34555666666666666667777777766666643 11 11234
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 51 FTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
|..|...|.+.+++++|.+.++.-++-..+..+.|..+|..++...+-+.|...+.+|++.-|..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 56667777778888888888888888777778888888888888888888888888888888873
No 243
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.86 E-value=0.021 Score=39.14 Aligned_cols=48 Identities=17% Similarity=0.080 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc
Q psy11461 34 INCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL 81 (253)
Q Consensus 34 ~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (253)
+..+.+.+..+|.+..+.+.+|.++...|++++|+..+-.++..++++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 444555666666666666666666666666666666666666655543
No 244
>KOG4507|consensus
Probab=96.83 E-value=0.0046 Score=55.71 Aligned_cols=95 Identities=18% Similarity=0.173 Sum_probs=85.2
Q ss_pred HHHHhccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHH
Q psy11461 22 NRYFGLRQYEEAINCYTRAIIKNPVIP-SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDE 100 (253)
Q Consensus 22 ~~~~~~g~~~~A~~~y~~ai~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~ 100 (253)
......|+.-.|+.|+..|+...|... ....++|.+..+.+-.-.|-..+.+++.+....+-.++.+|.+++.+.+.+.
T Consensus 615 lywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 615 LYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred ceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 333457999999999999999988644 4688999999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHHhhchhcc
Q psy11461 101 AVKHLQRAYDLSREQN 116 (253)
Q Consensus 101 A~~~~~~al~l~p~~~ 116 (253)
|++.|+.|+.++|++.
T Consensus 695 a~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCP 710 (886)
T ss_pred HHHHHHHHHhcCCCCh
Confidence 9999999999999873
No 245
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.81 E-value=0.022 Score=55.46 Aligned_cols=101 Identities=10% Similarity=-0.028 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC------cH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI-----PSYFTNRALCYLKLKQYVHCCDDCRKALELEPS------LV 82 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~------~~ 82 (253)
......+|..++..|+++.|...+.+++...+.. ..+...+|.++...|++++|...+.+++.+... ..
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 4455567888999999999999999999865542 235678899999999999999999999876432 13
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
.++..+|.++...|++++|...+.+++.+...
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 563 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEE 563 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46678899999999999999999999987544
No 246
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.80 E-value=0.011 Score=36.26 Aligned_cols=34 Identities=9% Similarity=0.316 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
..+|.+|..++.+|+|++|..++..++++.|++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 4678999999999999999999999999999983
No 247
>KOG1586|consensus
Probab=96.76 E-value=0.22 Score=40.25 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=64.5
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHh-hCHHHHHHHHHHHHhhCCC-----
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS------YFTNRALCYLKL-KQYVHCCDDCRKALELEPS----- 80 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~------~~~~~a~~~~~~-~~~~~A~~~~~~al~l~p~----- 80 (253)
++..-+..+..+|+.++..+|+.++.++|.+..+-.. .+..+|..|-.- .++++|+.+|++|-+....
T Consensus 72 Daat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 72 DAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS 151 (288)
T ss_pred hHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 3333444444455666788888888888777655433 233666666543 6777788887777654321
Q ss_pred -cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 81 -LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 81 -~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.-+++...+.....+++|..|+..|.++.+..-++
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 23456666666677777777777777776655444
No 248
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.75 E-value=0.029 Score=49.85 Aligned_cols=99 Identities=15% Similarity=0.100 Sum_probs=57.3
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHH
Q psy11461 18 KDEGNRYFGLRQYEEAINCYTRAIIKNPV--IPSYFTNRALCYLKLKQYVHCCDDCRKALEL-EPSLVKAQFFLGQALHE 94 (253)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~y~~ai~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-~p~~~~a~~~lg~~~~~ 94 (253)
..+|.++.+.|+.++||+.+...++.+|. +..++.|+..|++.++.|.++...+.+--.+ -|++....|..|.....
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 44666777777777777777777766654 3446677777777777777766666653222 14444444444443322
Q ss_pred -hCC---------------HHHHHHHHHHHHhhchhcc
Q psy11461 95 -INH---------------YDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 95 -~~~---------------~~~A~~~~~~al~l~p~~~ 116 (253)
.++ -..|++.+.+|++.+|..+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 111 1235566677777766653
No 249
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.73 E-value=0.0024 Score=33.42 Aligned_cols=32 Identities=31% Similarity=0.562 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
.+++.+|.++..++++++|+..+.+++++.|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 47889999999999999999999999998875
No 250
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.68 E-value=0.056 Score=45.34 Aligned_cols=104 Identities=14% Similarity=0.059 Sum_probs=85.0
Q ss_pred ccHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH---HHHHH
Q psy11461 12 LSDKELKDEGNRYFG-LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV---KAQFF 87 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~-~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~~~ 87 (253)
.....|...|..-+. .++...|...|+.+++..|.+..+|......+...++.+.|...|++++..-|... ..|-.
T Consensus 33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~ 112 (280)
T PF05843_consen 33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKK 112 (280)
T ss_dssp S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 456778888888666 67777799999999999999999999999999999999999999999999876655 45666
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 88 LGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
...--...|+.+...+...++.+..|++
T Consensus 113 ~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 113 FIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 6666677799999999999999998874
No 251
>KOG3824|consensus
Probab=96.67 E-value=0.028 Score=47.02 Aligned_cols=71 Identities=18% Similarity=0.017 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461 50 YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120 (253)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 120 (253)
+-.+.|.-..+.|+.++|...|..|+.++|+++.++...|+..-..++.-+|-.+|.+|+.++|.+..++.
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 44555666778999999999999999999999999999999999999999999999999999999865543
No 252
>KOG1941|consensus
Probab=96.67 E-value=0.36 Score=41.56 Aligned_cols=102 Identities=19% Similarity=0.208 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC------c
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI------PSYFTNRALCYLKLKQYVHCCDDCRKALELEPS------L 81 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~------~ 81 (253)
......+|+.+...+.|+.+++.|+.|+.....+ ..++..+|..+..+.++++|.-+..+|.++-.. +
T Consensus 122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~ 201 (518)
T KOG1941|consen 122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS 201 (518)
T ss_pred chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh
Confidence 3566779999999999999999999999884432 247889999999999999999999999887432 1
Q ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 82 ----VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 82 ----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.-++|.++.++..+|..-+|.++++.+.++.-..
T Consensus 202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~ 239 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH 239 (518)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 2357889999999999999999999999886543
No 253
>KOG2053|consensus
Probab=96.65 E-value=0.057 Score=51.03 Aligned_cols=107 Identities=13% Similarity=-0.002 Sum_probs=90.0
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
..|...-+....|..+++.|++++|..+++..-...+++-..+.-+-.||..++++++|...|++++.-+|. ..-++.+
T Consensus 38 k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~l 116 (932)
T KOG2053|consen 38 KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHL 116 (932)
T ss_pred HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHH
Confidence 456666677778899999999999998888877778888888999999999999999999999999999999 8888889
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
-.+|...+.|.+=-+.--+..+.-|+++
T Consensus 117 FmayvR~~~yk~qQkaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 117 FMAYVREKSYKKQQKAALQLYKNFPKRA 144 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 9999999988765555555555666654
No 254
>KOG1585|consensus
Probab=96.62 E-value=0.063 Score=43.59 Aligned_cols=104 Identities=18% Similarity=0.168 Sum_probs=78.4
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHHhhC-----CC
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP------SYFTNRALCYLKLKQYVHCCDDCRKALELE-----PS 80 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-----p~ 80 (253)
..+..+..-+..|...++|++|-.++.+|+..+..+. ..|-.-|.....+..|.++...+++|..+. |+
T Consensus 29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence 3456667777778889999999999999997755443 356667778888999999999999998873 33
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 81 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
....-.-.+--..+.-++++|++.|++++.+-..+
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 33333334444567778999999999999886544
No 255
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.56 E-value=0.041 Score=42.84 Aligned_cols=101 Identities=18% Similarity=0.131 Sum_probs=78.8
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC--cH----
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPS--LV---- 82 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~---- 82 (253)
..-..+..+|..|.+.|+++.|+++|.++....... ...+.+.-.+.+..++|..+.....++-.+-.. +.
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 345678899999999999999999999987764432 356788888888999999999999998765322 22
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461 83 KAQFFLGQALHEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 112 (253)
+....-|..+...++|.+|.+.|..+..-.
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 223445778888899999999988776544
No 256
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.058 Score=48.79 Aligned_cols=116 Identities=19% Similarity=-0.025 Sum_probs=91.2
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHH-HHHHHHHHhhCCCcHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHC-CDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A-~~~~~~al~l~p~~~~a~~~ 87 (253)
.++.-....+ +.......++...++.....++..+|.++.++.++|.+....|....+ ..++..+....|++......
T Consensus 63 ~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 141 (620)
T COG3914 63 VNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGH 141 (620)
T ss_pred CCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhh
Confidence 3333333334 567777889999999999999999999999999999998887765554 45555589999999887766
Q ss_pred H------HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHH
Q psy11461 88 L------GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIAC 125 (253)
Q Consensus 88 l------g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 125 (253)
+ |.....+|+..++...+.++..+.|.++...+..+..
T Consensus 142 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 142 LIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 6 8888889999999999999999999986655555544
No 257
>PLN03077 Protein ECB2; Provisional
Probab=96.49 E-value=0.063 Score=52.19 Aligned_cols=102 Identities=11% Similarity=0.029 Sum_probs=82.7
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC--CcHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP--SLVKAQF 86 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--~~~~a~~ 86 (253)
+.+...|..+...|.+.|+.++|+..|++.... .|+. ..|..+-.++.+.|.+++|...++......+ -+...|.
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 456778999999999999999999999998874 4554 4455566678899999999999999884332 2457888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 87 FLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
.+..++...|++++|.+.+++. .+.|+
T Consensus 630 ~lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 630 CVVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 9999999999999999999875 34444
No 258
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.49 E-value=0.054 Score=40.54 Aligned_cols=85 Identities=9% Similarity=-0.061 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH 93 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 93 (253)
...+..........++..++...+...--+.|..+.+-..-|..+...|+|.+|+..++.+..-.+..+.+.-.++.|+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 34555666666778999999999998888899999999999999999999999999999999888888888888899999
Q ss_pred HhCCH
Q psy11461 94 EINHY 98 (253)
Q Consensus 94 ~~~~~ 98 (253)
.+|+.
T Consensus 90 al~Dp 94 (153)
T TIGR02561 90 AKGDA 94 (153)
T ss_pred hcCCh
Confidence 88874
No 259
>KOG1070|consensus
Probab=96.49 E-value=0.066 Score=52.97 Aligned_cols=114 Identities=11% Similarity=-0.029 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS--LVKAQFFLGQAL 92 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~lg~~~ 92 (253)
..+..+...|-+.+++++|.++|+..+.........|...|..++.+++-+.|...+.+|+.--|. +.......|+.-
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 356667888889999999999999999998888999999999999999999999999999999898 788889999999
Q ss_pred HHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHH
Q psy11461 93 HEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLR 128 (253)
Q Consensus 93 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 128 (253)
++.|+.+.+...|.-.+.-+|.-.+-+.-.+...++
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik 1646 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIK 1646 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHc
Confidence 999999999999999999998865544444444443
No 260
>KOG2610|consensus
Probab=96.47 E-value=0.022 Score=48.22 Aligned_cols=98 Identities=13% Similarity=-0.005 Sum_probs=59.2
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK-NPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ 85 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 85 (253)
.|.+..+++---..+|.+|+...-...+.+.+-. +|+. +.+.-.+|.++...|-|++|.+..++++++++.+.-+.
T Consensus 133 ~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~ 212 (491)
T KOG2610|consen 133 YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWAS 212 (491)
T ss_pred CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHH
Confidence 3444444555555555566666555555555554 4433 23344456666677777777777777777777776666
Q ss_pred HHHHHHHHHhCCHHHHHHHHHH
Q psy11461 86 FFLGQALHEINHYDEAVKHLQR 107 (253)
Q Consensus 86 ~~lg~~~~~~~~~~~A~~~~~~ 107 (253)
..++.++-..|++.++.+...+
T Consensus 213 Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 213 HAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHHHhcchhhhHHHHHHh
Confidence 6666666666666666655443
No 261
>KOG2610|consensus
Probab=96.39 E-value=0.064 Score=45.54 Aligned_cols=97 Identities=15% Similarity=0.093 Sum_probs=82.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh-CCCc---HHHHHHHHHHHHHh
Q psy11461 20 EGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL-EPSL---VKAQFFLGQALHEI 95 (253)
Q Consensus 20 ~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-~p~~---~~a~~~lg~~~~~~ 95 (253)
.+-..+.+|++.+|.....+.+...|.+..++..--.+++-+|+...-...+++++-. +++- ....-.++.++.+.
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 4456788999999999999999999999888887788888899999989999998865 5554 55566678889999
Q ss_pred CCHHHHHHHHHHHHhhchhcc
Q psy11461 96 NHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 96 ~~~~~A~~~~~~al~l~p~~~ 116 (253)
|-|++|.+..+++++++|.++
T Consensus 189 g~y~dAEk~A~ralqiN~~D~ 209 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDC 209 (491)
T ss_pred ccchhHHHHHHhhccCCCcch
Confidence 999999999999999999874
No 262
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.31 E-value=0.11 Score=45.09 Aligned_cols=86 Identities=13% Similarity=0.002 Sum_probs=64.3
Q ss_pred cccHHHHHHHHHHHHh---ccCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHH---------hhCHHHHHHHHHHHHhh
Q psy11461 11 NLSDKELKDEGNRYFG---LRQYEEAINCYTR-AIIKNPVIPSYFTNRALCYLK---------LKQYVHCCDDCRKALEL 77 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~---~g~~~~A~~~y~~-ai~~~p~~~~~~~~~a~~~~~---------~~~~~~A~~~~~~al~l 77 (253)
+.....-+.+|..+.+ .|+.+.|+..+.. .....+.++..++.+|.+|.. ....++|+.+|.++..+
T Consensus 176 ~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 176 ANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred hcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 4456667788888888 9999999999999 555567789999999999875 22478899999999999
Q ss_pred CCCcHHHHHHHHHHHHHhCC
Q psy11461 78 EPSLVKAQFFLGQALHEINH 97 (253)
Q Consensus 78 ~p~~~~a~~~lg~~~~~~~~ 97 (253)
+|+... =-+++.++...|.
T Consensus 256 ~~~~Y~-GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 256 EPDYYS-GINAATLLMLAGH 274 (374)
T ss_pred Cccccc-hHHHHHHHHHcCC
Confidence 975433 2344445555554
No 263
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.25 E-value=0.091 Score=42.23 Aligned_cols=92 Identities=22% Similarity=0.295 Sum_probs=67.5
Q ss_pred HHhccCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHhhCHHH-------HHHHHHHHHhhCC------CcHH
Q psy11461 24 YFGLRQYEEAINCYTRAIIK----NPV---IPSYFTNRALCYLKLKQYVH-------CCDDCRKALELEP------SLVK 83 (253)
Q Consensus 24 ~~~~g~~~~A~~~y~~ai~~----~p~---~~~~~~~~a~~~~~~~~~~~-------A~~~~~~al~l~p------~~~~ 83 (253)
+-....+++|++.|.-|+.. ... -+.++..+|.+|..+++-+. |...|.+++.... +...
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 34456788999999988754 112 24577788999998888554 5555555554332 2357
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 84 AQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.+|.+|.++..+|++++|.+.|.+++.....+
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 88999999999999999999999999765443
No 264
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.22 E-value=0.041 Score=37.72 Aligned_cols=50 Identities=24% Similarity=0.320 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 67 CCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 67 A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
.+..+++.+..+|++..+.+.+|.++...|++++|++.+..+++.+++..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~ 56 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE 56 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence 46678899999999999999999999999999999999999999998763
No 265
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.21 E-value=0.0094 Score=47.74 Aligned_cols=61 Identities=16% Similarity=0.105 Sum_probs=52.1
Q ss_pred HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH
Q psy11461 22 NRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV 82 (253)
Q Consensus 22 ~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (253)
......++.+.|.+.|.+++.+-|....-|+.+|....+.|+++.|.+.|+++++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456778888899999999999999888899999988899999999999999999988754
No 266
>KOG1308|consensus
Probab=96.15 E-value=0.0031 Score=53.19 Aligned_cols=73 Identities=18% Similarity=0.124 Sum_probs=68.4
Q ss_pred CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC
Q psy11461 6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE 78 (253)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 78 (253)
.+.-+|..+..+...|.++.+.++...||.-|..|+.++|+.+.-|-.++.+...+|+|.+|..++..+.+++
T Consensus 140 ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 140 AIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred ccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 4556788899999999999999999999999999999999999999999999999999999999999999875
No 267
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.10 E-value=0.013 Score=46.98 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=56.8
Q ss_pred HHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 56 LCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 56 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
....+.++.+.+.+.+.+++.+-|.....|+++|...-+.|+++.|.+.|.++++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3455778999999999999999999999999999999999999999999999999999874
No 268
>KOG4507|consensus
Probab=96.03 E-value=0.23 Score=45.24 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHh-ccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461 15 KELKDEGNRYFG-LRQYEEAINCYTRAIIKNPVIP--SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA 91 (253)
Q Consensus 15 ~~~~~~g~~~~~-~g~~~~A~~~y~~ai~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 91 (253)
..+..++-.|++ +|+..+|..||..++-..|... .....+|.++.+.|...+|--.+..|+.-.|.....+|.+|.+
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i 292 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNI 292 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHH
Confidence 345566666665 8999999999999998876543 4788899999999999999999988888777777779999999
Q ss_pred HHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 92 LHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 92 ~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
+..++.+...+..|..+.+.+|....
T Consensus 293 ~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 293 YAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred HHHHhhhhhhhhhhhhhhccCcchhH
Confidence 99999999999999999999987543
No 269
>KOG3364|consensus
Probab=95.94 E-value=0.32 Score=35.86 Aligned_cols=69 Identities=9% Similarity=0.124 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHHhhC---HHHHHHHHHHHHh-hCCC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 47 IPSYFTNRALCYLKLKQ---YVHCCDDCRKALE-LEPS-LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 47 ~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~-l~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.....+++|.++.+..+ ..+.+..+...++ -+|. .....|+|+..++.+++|+.++.+++..++..|++
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 34578889999987654 6677888888886 4454 45678999999999999999999999999999998
No 270
>KOG1915|consensus
Probab=95.93 E-value=0.14 Score=45.50 Aligned_cols=98 Identities=18% Similarity=0.057 Sum_probs=68.2
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL 92 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 92 (253)
-+..|...|....++.+...|...+-.||-..|.+- ++-..-..-.++++++.+...|.+-|.-.|.|..+|...|..-
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHH
Confidence 345566666666777777777777777777777643 3333344455677777777777777777777777777777777
Q ss_pred HHhCCHHHHHHHHHHHHhh
Q psy11461 93 HEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 93 ~~~~~~~~A~~~~~~al~l 111 (253)
..+|+.+.|...|.-|+.-
T Consensus 482 ~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHhhhHHHHHHHHHHHhcC
Confidence 7777777777777777654
No 271
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.13 Score=42.46 Aligned_cols=68 Identities=15% Similarity=0.128 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 49 SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
....++=..+...++|+.|..+..+.+.++|+++.-+.-.|.+|.++|.+.-|+..+...++.+|+++
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 45666777888899999999999999999999999999999999999999999999999999999973
No 272
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.84 E-value=0.022 Score=32.30 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461 50 YFTNRALCYLKLKQYVHCCDDCRKALE 76 (253)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (253)
++.++|.+|..+|++++|...+++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344445555555555555554444444
No 273
>KOG4151|consensus
Probab=95.73 E-value=0.048 Score=50.84 Aligned_cols=103 Identities=32% Similarity=0.507 Sum_probs=91.5
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHh--hCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV----IPSYFTNRALCYLKL--KQYVHCCDDCRKALELEPSLVKAQF 86 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~----~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~l~p~~~~a~~ 86 (253)
.+......|+.+++.++|.+|--.|..++.+-|. .+..+.+.+.|+..+ ++|..++..+.-|+...|...++++
T Consensus 52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll 131 (748)
T KOG4151|consen 52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALL 131 (748)
T ss_pred HHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHh
Confidence 3556788999999999999999999999988774 456788899888875 5899999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 87 FLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.++.+|..++..+-|++.+.-.....|.+
T Consensus 132 ~r~~~y~al~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 132 KRARKYEALNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999988888888887
No 274
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.093 Score=43.26 Aligned_cols=75 Identities=24% Similarity=0.228 Sum_probs=65.8
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461 17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA 91 (253)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 91 (253)
.-++=..+.+.++++.|..+-.+.+.++|.++.-+.-+|.+|.++|.+.-|+.++...+...|+.+.+-...+..
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 334555678899999999999999999999999999999999999999999999999999999988776554443
No 275
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.67 E-value=0.23 Score=42.57 Aligned_cols=107 Identities=18% Similarity=0.154 Sum_probs=75.3
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--C-C----
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNP----VIPSYFTNRALCYLKLKQYVHCCDDCRKALEL--E-P---- 79 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~-p---- 79 (253)
...+..+...+..+.+.|.++.|...+.++...++ ..+.+....|..+...|+..+|+..++..+.. . +
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 34566777888888888888888888888777652 14566777777888888888888877776661 0 0
Q ss_pred ---------------------------CcHHHHHHHHHHHHHh------CCHHHHHHHHHHHHhhchhccc
Q psy11461 80 ---------------------------SLVKAQFFLGQALHEI------NHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 80 ---------------------------~~~~a~~~lg~~~~~~------~~~~~A~~~~~~al~l~p~~~~ 117 (253)
...++++.+|.-.... +..++++..|..+.+++|....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence 0134677777777777 7788888888888888876543
No 276
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.65 E-value=0.053 Score=45.48 Aligned_cols=86 Identities=15% Similarity=0.113 Sum_probs=68.2
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH-HHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 38 TRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF-LGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 38 ~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~-lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
.++....|.++.+|...+..-.+.+.|.+.-..|.+++..+|.|+..|.. .+.-+...++++.+...|.++++++|.++
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 33444467888888888888888888888899999999999999888876 55667778899999999999999999886
Q ss_pred cchHHHH
Q psy11461 117 LNYGDDI 123 (253)
Q Consensus 117 ~~~~~~~ 123 (253)
..+.+-.
T Consensus 177 ~iw~eyf 183 (435)
T COG5191 177 RIWIEYF 183 (435)
T ss_pred hHHHHHH
Confidence 5544433
No 277
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.49 E-value=0.32 Score=42.39 Aligned_cols=95 Identities=18% Similarity=0.130 Sum_probs=64.5
Q ss_pred HHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--------------C------------CCc---HHHHHHHHHH
Q psy11461 41 IIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL--------------E------------PSL---VKAQFFLGQA 91 (253)
Q Consensus 41 i~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--------------~------------p~~---~~a~~~lg~~ 91 (253)
+..+|-+...+..++.++..+|++..|...+++|+-. + +.| ..+.++....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 4557888888888888888888888888888777532 1 111 2346667777
Q ss_pred HHHhCCHHHHHHHHHHHHhhchh-cccchHHHHHHHHHHHHHHHH
Q psy11461 92 LHEINHYDEAVKHLQRAYDLSRE-QNLNYGDDIACQLRIAKKKRW 135 (253)
Q Consensus 92 ~~~~~~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~~~~~~ 135 (253)
+...|.+..|.+.++-.+.++|. ++....--|.....+++.-.|
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~ 157 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQW 157 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHH
Confidence 88888888888888888888888 555444444444444443333
No 278
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.47 E-value=0.042 Score=31.12 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIK 43 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~ 43 (253)
+..+.++|..+...|+|++|+.++.+++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 567899999999999999999999999976
No 279
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.47 E-value=0.82 Score=40.52 Aligned_cols=53 Identities=26% Similarity=0.285 Sum_probs=46.7
Q ss_pred HHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy11461 55 ALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108 (253)
Q Consensus 55 a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 108 (253)
|.-++..|+|.+|.....=..+++| ++.++..+|.|+....+|++|-.++...
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4456679999999999998999999 9999999999999999999999887743
No 280
>KOG1941|consensus
Probab=95.45 E-value=0.1 Score=44.76 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=84.9
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC---
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV----------IPSYFTNRALCYLKLKQYVHCCDDCRKALELE--- 78 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--- 78 (253)
..-+.+..+|..+-+..++++|.-+..+|..+-.+ .....+.++.++..+|....|.++|+++.++.
T Consensus 160 LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~ 239 (518)
T KOG1941|consen 160 LELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH 239 (518)
T ss_pred eeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 34557788999999999999999999999877322 12357788999999999999999999998763
Q ss_pred ---CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 79 ---PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 79 ---p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+.....+.-+|.+|...|+.+.|..-|+.|...-.+-
T Consensus 240 Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~ 279 (518)
T KOG1941|consen 240 GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL 279 (518)
T ss_pred CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh
Confidence 3345667888999999999999999999998875543
No 281
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.3 Score=40.81 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy11461 51 FTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQR 107 (253)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 107 (253)
-..-+.-....|++.+|...+..++...|++..+...++.|+...|+.+.|...+..
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 444566677899999999999999999999999999999999999999999877664
No 282
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.29 E-value=0.12 Score=35.67 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
.++.++|.++...|++++|+..++.|+++.....
T Consensus 42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 42 YALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 4567778888888888888888888888876653
No 283
>KOG2396|consensus
Probab=95.20 E-value=0.17 Score=45.10 Aligned_cols=75 Identities=13% Similarity=0.037 Sum_probs=67.9
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHhhCCCcHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ-YVHCCDDCRKALELEPSLVKAQF 86 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~a~~ 86 (253)
.+...|......+.+.+.+..--..|.+++..+|+++.+|..-|.-.+..+. .+.|...+.+++..+|++++.|.
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 3677888888888888889999999999999999999999999999888886 99999999999999999998754
No 284
>KOG3364|consensus
Probab=95.09 E-value=0.5 Score=34.85 Aligned_cols=76 Identities=18% Similarity=0.116 Sum_probs=61.6
Q ss_pred cHHHHHHHHHHHHhcc---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLR---QYEEAINCYTRAII-KNPV-IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g---~~~~A~~~y~~ai~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
..+..++++..+.+.. +..+.|.+++..+. .+|. .-.+.+-+|..++++++|+.++.+++..++..|+|..+.-.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4556788888887765 45689999999996 5554 34577889999999999999999999999999999887654
Q ss_pred H
Q psy11461 88 L 88 (253)
Q Consensus 88 l 88 (253)
.
T Consensus 111 k 111 (149)
T KOG3364|consen 111 K 111 (149)
T ss_pred H
Confidence 3
No 285
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.93 E-value=0.5 Score=41.13 Aligned_cols=105 Identities=10% Similarity=0.055 Sum_probs=83.9
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---hhCHHHHHHHHHHH-HhhCCCcH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK----NPVIPSYFTNRALCYLK---LKQYVHCCDDCRKA-LELEPSLV 82 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a-l~l~p~~~ 82 (253)
-.++....++--.|....+|+.-+......-.. -+..+...+.+|.++-+ .|+.++|+..+..+ ....+.++
T Consensus 138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 344556667777788899999999988877665 44567778888999998 99999999999995 45567788
Q ss_pred HHHHHHHHHHHHh---------CCHHHHHHHHHHHHhhchhc
Q psy11461 83 KAQFFLGQALHEI---------NHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 83 ~a~~~lg~~~~~~---------~~~~~A~~~~~~al~l~p~~ 115 (253)
..+..+|.+|..+ ...+.|+..|.++.+++|+-
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 9999999888655 24788999999999999754
No 286
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.90 E-value=0.26 Score=33.95 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=46.9
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy11461 23 RYFGLRQYEEAINCYTRAIIKNPV---------IPSYFTNRALCYLKLKQYVHCCDDCRKALELEP 79 (253)
Q Consensus 23 ~~~~~g~~~~A~~~y~~ai~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 79 (253)
...+.|+|..|++.+.+....... ...+..++|.++...|++++|+..+++|+.+-.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 457899999999998888766322 235678899999999999999999999998743
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.78 E-value=2.3 Score=36.32 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy11461 44 NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS----LVKAQFFLGQALHEINHYDEAVKHLQRAYD 110 (253)
Q Consensus 44 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 110 (253)
.......+...+.+..+.|+++-|...+.++...++. .+...+..+..+...|+..+|+..++..+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556677888888888888888888888888775521 456777778888888888888888877776
No 288
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.75 E-value=0.07 Score=44.81 Aligned_cols=77 Identities=12% Similarity=0.080 Sum_probs=69.0
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTN-RALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
+.++..|...++...+.|.|..--..|.+++..+|.++++|.. .+.-+...++++.+...+.+++.++|++++.|+.
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 5678889999999999999999999999999999999999887 5667778899999999999999999999987643
No 289
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.58 E-value=0.64 Score=30.81 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhhCHHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYF---TNRALCYLKLKQYVHCCDDCRKAL 75 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~al 75 (253)
+......|..++...+.++|+..+++++...++.+.-+ -.+..+|...|+|.+++.+..+=+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777777777777766655433 334455556666666665554433
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.31 E-value=1.8 Score=33.02 Aligned_cols=111 Identities=11% Similarity=0.100 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHH-HHH
Q psy11461 49 SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIA-CQL 127 (253)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~-~~~ 127 (253)
..+.....+-...++.+++...+...-.+.|..+..-..-|..+...|+|.+|+..|+.+..-.|..+. ..... .-+
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~--~kALlA~CL 88 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY--AKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH--HHHHHHHHH
Confidence 345556666677889999999998888899999999999999999999999999999998777776532 22211 112
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q psy11461 128 RIAKKKRWAETEEKRIA--QEIELLTYLNRLITEDA 161 (253)
Q Consensus 128 ~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~~~ 161 (253)
.......|.....+... .++.....+..++..+-
T Consensus 89 ~~~~D~~Wr~~A~evle~~~d~~a~~Lv~~Ll~~~~ 124 (160)
T PF09613_consen 89 YALGDPSWRRYADEVLESGADPDARALVRALLARAD 124 (160)
T ss_pred HHcCChHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 33333455554443333 24555666666655443
No 291
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.23 E-value=0.098 Score=29.54 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 85 QFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 85 ~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
+..||.+....++|++|+..|.+++.+
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 444555555555555555555555544
No 292
>KOG3617|consensus
Probab=94.19 E-value=0.64 Score=44.23 Aligned_cols=96 Identities=17% Similarity=0.127 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRA----------IIKNP----------VIPSYFTNRALCYLKLKQYVHCCDDCRKA 74 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~a----------i~~~p----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (253)
..+++.+..+-.+++...|+++|.++ +..+| .+..+|.--|..+-..|+.+.|+..|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 46888999999999999999999886 22344 35567777788888899999999888776
Q ss_pred Hhh---------------------CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy11461 75 LEL---------------------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYD 110 (253)
Q Consensus 75 l~l---------------------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 110 (253)
-.. ...+..|.|.+|.-|-..|++.+|+..|.+|..
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 433 234667899999999999999999988877543
No 293
>KOG1585|consensus
Probab=94.15 E-value=2.7 Score=34.44 Aligned_cols=97 Identities=14% Similarity=0.060 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc---HHH--
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIK-----NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL---VKA-- 84 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a-- 84 (253)
..+-..|...-....+.++..+|.+|..+ .|+.+..-..+|.=....-++++|++.|++++.+-... ..+
T Consensus 72 KayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e 151 (308)
T KOG1585|consen 72 KAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE 151 (308)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 34444555555677888888888888876 35555555555666667778999999999988764332 223
Q ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 85 -QFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 85 -~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
+-..+.++....++++|-..+.+-..+
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence 344566688888898887777764433
No 294
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.10 E-value=1.1 Score=39.14 Aligned_cols=102 Identities=17% Similarity=0.151 Sum_probs=78.9
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKN---PV-----IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK 83 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~---p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (253)
.-..++...-......|+|+.|+++........ +. -..++...|..... .+...|..+..+++++.|+...
T Consensus 186 ~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvP 264 (531)
T COG3898 186 QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVP 264 (531)
T ss_pred CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccch
Confidence 334455555566788999999999987765442 21 22344444444433 3588899999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 84 AQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
+-..-+.+++..|+..++-..++.+-+..|.
T Consensus 265 aav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 265 AAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 9999999999999999999999999999887
No 295
>KOG2300|consensus
Probab=94.07 E-value=1.5 Score=39.23 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=77.0
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc------
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV---IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL------ 81 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------ 81 (253)
...++..+.+|..+..-+.|+.|...|..|++.... .+.+-.|+|..|+..++-+.--+.++. +.|.|
T Consensus 364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ss 440 (629)
T KOG2300|consen 364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSS 440 (629)
T ss_pred HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchH
Confidence 456788899999999999999999999999987543 234667789999998875543333322 33432
Q ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461 82 ----VKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 82 ----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 112 (253)
..++|..|.-.+..+++.||...+++.++..
T Consensus 441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 2457888999999999999999999999986
No 296
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.03 E-value=0.24 Score=27.60 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhccCHHHHHHH--HHHHHHhCCC
Q psy11461 16 ELKDEGNRYFGLRQYEEAINC--YTRAIIKNPV 46 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~--y~~ai~~~p~ 46 (253)
.++.+|..++.+|+|++|+.. |.-+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 455566666666666666666 3355555543
No 297
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.00 E-value=0.33 Score=40.19 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461 33 AINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE 94 (253)
Q Consensus 33 A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 94 (253)
|+.+|.+|+.+.|.+...|+.+|.++...|+.-.|+-+|-+++....-.+.|..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999997765567788888777776
No 298
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.86 E-value=2.1 Score=35.81 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=55.6
Q ss_pred HHhccCHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHhh-CHHHHHHHHHHHHhh----CC---C-------
Q psy11461 24 YFGLRQYEEAINCYTRAIIKN-PVI-------PSYFTNRALCYLKLK-QYVHCCDDCRKALEL----EP---S------- 80 (253)
Q Consensus 24 ~~~~g~~~~A~~~y~~ai~~~-p~~-------~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l----~p---~------- 80 (253)
..++|+++.|.-+|.++-... ..+ +..+++.|...+..+ +++.|..++++|+++ .+ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457788888888888886654 222 346777788888888 888888888888877 21 1
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHH
Q psy11461 81 LVKAQFFLGQALHEINHYDEAVK 103 (253)
Q Consensus 81 ~~~a~~~lg~~~~~~~~~~~A~~ 103 (253)
....+..++.++...+.++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH
Confidence 13456777888888777654333
No 299
>KOG0530|consensus
Probab=93.78 E-value=3.3 Score=34.24 Aligned_cols=95 Identities=11% Similarity=0.034 Sum_probs=78.6
Q ss_pred HhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHH-HHH
Q psy11461 25 FGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK-QYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYD-EAV 102 (253)
Q Consensus 25 ~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~-~A~ 102 (253)
.+...-..|+..-..+|.++|.+.+.|.-|-.|+..++ +..+-+.++..++.-+|.|...|..+-.+.-.+|++. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 34556688999999999999999999998888887766 5777888899999999999999999988888888887 778
Q ss_pred HHHHHHHhhchhcccch
Q psy11461 103 KHLQRAYDLSREQNLNY 119 (253)
Q Consensus 103 ~~~~~al~l~p~~~~~~ 119 (253)
+..+.++..+..+-.++
T Consensus 134 ef~~~~l~~DaKNYHaW 150 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAW 150 (318)
T ss_pred HHHHHHHhccccchhhh
Confidence 88888888777664443
No 300
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.73 E-value=3.7 Score=35.18 Aligned_cols=107 Identities=9% Similarity=-0.110 Sum_probs=79.6
Q ss_pred CCCcccHHHHHHHHHHHHhcc------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLR------------QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g------------~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 75 (253)
..+|.+...|..+...--..- -.+..+..|.+|++.+|.+..++..+-.+..+....+...+-+++++
T Consensus 13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l 92 (321)
T PF08424_consen 13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELL 92 (321)
T ss_pred HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 356777777777765442221 14566778999999999999999998888888889999999999999
Q ss_pred hhCCCcHHHHHHHHHHH---HHhCCHHHHHHHHHHHHhhchh
Q psy11461 76 ELEPSLVKAQFFLGQAL---HEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 76 ~l~p~~~~a~~~lg~~~---~~~~~~~~A~~~~~~al~l~p~ 114 (253)
..+|+++..|..+-... +..-.++.....|.++++.-..
T Consensus 93 ~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~ 134 (321)
T PF08424_consen 93 FKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSR 134 (321)
T ss_pred HHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 99999988775442222 2223577888888888876443
No 301
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.71 E-value=0.18 Score=28.47 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461 49 SYFTNRALCYLKLKQYVHCCDDCRKALEL 77 (253)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (253)
.+|..+|.+.+..++|+.|+.+|.+++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 47889999999999999999999999874
No 302
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.16 E-value=2.9 Score=34.94 Aligned_cols=97 Identities=22% Similarity=0.190 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHh----ccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhh-------CHHHHHHHHHHHHhhCCCc
Q psy11461 14 DKELKDEGNRYFG----LRQYEEAINCYTRAIIKNPVI-PSYFTNRALCYLKLK-------QYVHCCDDCRKALELEPSL 81 (253)
Q Consensus 14 a~~~~~~g~~~~~----~g~~~~A~~~y~~ai~~~p~~-~~~~~~~a~~~~~~~-------~~~~A~~~~~~al~l~p~~ 81 (253)
+...+.+|..+.. ..++.+|...|.+|....... .....++|.+|..-. +...|...+.++-... +
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~ 186 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N 186 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C
Confidence 3345555555554 336666666666666553332 233555555554421 1224555555555543 5
Q ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhc
Q psy11461 82 VKAQFFLGQALHE----INHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 82 ~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~ 112 (253)
+.+.+.+|.+|.. ..++.+|...|.+|-+..
T Consensus 187 ~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 187 PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 5566666655533 125566666666665554
No 303
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.15 E-value=0.75 Score=38.41 Aligned_cols=64 Identities=14% Similarity=0.066 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 48 PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
..++..++..+...++++.++..+++.+.++|-+-.+|..+-.+|...|+...|+..|++.-++
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999999999988775
No 304
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.06 E-value=0.14 Score=26.05 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHH
Q psy11461 84 AQFFLGQALHEINHYDEAVKHL 105 (253)
Q Consensus 84 a~~~lg~~~~~~~~~~~A~~~~ 105 (253)
+.+.+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555555555555544
No 305
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.99 E-value=0.41 Score=26.61 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHH
Q psy11461 84 AQFFLGQALHEINHYDEAVKH 104 (253)
Q Consensus 84 a~~~lg~~~~~~~~~~~A~~~ 104 (253)
.++.+|..+...|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555555555
No 306
>KOG0530|consensus
Probab=92.93 E-value=2.6 Score=34.88 Aligned_cols=107 Identities=11% Similarity=0.026 Sum_probs=89.4
Q ss_pred CcccHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHH-HHHHHHHHHHhhCCCcHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGL-RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYV-HCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~-g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~l~p~~~~a~~~ 87 (253)
+|.+-..|.-.-.++-.. .+..+-.++++..+..+|.|..+|..|-.+....|++. .-+..++.++..+..|..+|..
T Consensus 73 NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWsh 152 (318)
T KOG0530|consen 73 NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSH 152 (318)
T ss_pred CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHH
Confidence 344455555555555443 35677788899999999999999999999999999888 8889999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 88 LGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
+-.+....+.++.-+.+....++.+--+.
T Consensus 153 RqW~~r~F~~~~~EL~y~~~Lle~Di~NN 181 (318)
T KOG0530|consen 153 RQWVLRFFKDYEDELAYADELLEEDIRNN 181 (318)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999876553
No 307
>KOG3807|consensus
Probab=92.92 E-value=5.5 Score=34.19 Aligned_cols=94 Identities=15% Similarity=0.032 Sum_probs=70.9
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC-------------------
Q psy11461 18 KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE------------------- 78 (253)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~------------------- 78 (253)
+..-...++..+..+-|..-..|+.++|..+.+|..+|.-- ..-..+|.+.+++|++..
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence 44556677888889999999999999999999999887543 233566777777766531
Q ss_pred ----CCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461 79 ----PSLV--KAQFFLGQALHEINHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 79 ----p~~~--~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p 113 (253)
..|+ ..-.+++.|..++|+..+|++.++...+--|
T Consensus 266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 1122 2346789999999999999999998887666
No 308
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.83 E-value=3.3 Score=35.48 Aligned_cols=85 Identities=9% Similarity=-0.071 Sum_probs=70.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhhC------------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHH
Q psy11461 34 INCYTRAIIKNPVIPSYFTNRALCYLKLKQ------------YVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEA 101 (253)
Q Consensus 34 ~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A 101 (253)
...|.+.+..+|.+..+|..+....-..-. .+.-+..+++|++.+|++...+..+-.+.....+.++.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 345788899999999999988766554432 45678889999999999999988888888888899999
Q ss_pred HHHHHHHHhhchhcccc
Q psy11461 102 VKHLQRAYDLSREQNLN 118 (253)
Q Consensus 102 ~~~~~~al~l~p~~~~~ 118 (253)
.+.+++++..+|++..-
T Consensus 85 ~~~we~~l~~~~~~~~L 101 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPEL 101 (321)
T ss_pred HHHHHHHHHHCCCChHH
Confidence 99999999999987543
No 309
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.64 E-value=0.59 Score=39.07 Aligned_cols=60 Identities=22% Similarity=0.187 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy11461 50 YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAY 109 (253)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 109 (253)
++...|..|...|.+.+|++.+++++.++|-+...+..+-.++..+|+--.+++.|.+.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 445568889999999999999999999999999999999999999999888877776543
No 310
>KOG0686|consensus
Probab=92.61 E-value=0.95 Score=39.53 Aligned_cols=97 Identities=23% Similarity=0.233 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC----C----CcH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV---IPSYFTNRALCYLKLKQYVHCCDDCRKALELE----P----SLV 82 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~----p----~~~ 82 (253)
=.++-.+|..|...|+++.|+++|.++-....+ ....+.|.-.+-..+|+|........+|...- . -..
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 346788999999999999999999996555433 23467788888888999999988888887651 0 123
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy11461 83 KAQFFLGQALHEINHYDEAVKHLQRAYD 110 (253)
Q Consensus 83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~ 110 (253)
+.....|.+.+.+++|..|.++|..+-.
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4566678899999999999999887643
No 311
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.59 E-value=0.18 Score=25.68 Aligned_cols=23 Identities=13% Similarity=-0.227 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHH
Q psy11461 50 YFTNRALCYLKLKQYVHCCDDCR 72 (253)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~ 72 (253)
+..++|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45556666666666666655543
No 312
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.50 E-value=3.5 Score=34.49 Aligned_cols=100 Identities=17% Similarity=0.088 Sum_probs=73.0
Q ss_pred cHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHh----CC---C-------CHHHHHHHHHHHHHhhCHHH---HHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLR-QYEEAINCYTRAIIK----NP---V-------IPSYFTNRALCYLKLKQYVH---CCDDCRKA 74 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g-~~~~A~~~y~~ai~~----~p---~-------~~~~~~~~a~~~~~~~~~~~---A~~~~~~a 74 (253)
-+..+++.|...+..+ ++..|+..+++|... .+ . ....+..++.+|+..+.++. |....+.+
T Consensus 34 La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l 113 (278)
T PF08631_consen 34 LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLL 113 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4668899999999999 999999999999887 21 1 12357778999988887654 34444444
Q ss_pred HhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461 75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 75 l~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 112 (253)
-.-.|+.+..++..-.++...++.+++.+.+.+.+..-
T Consensus 114 ~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 114 ESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 44567766666555455555788999999999888754
No 313
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.25 E-value=2.1 Score=28.46 Aligned_cols=62 Identities=19% Similarity=0.140 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH---HHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461 51 FTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF---LGQALHEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~---lg~~~~~~~~~~~A~~~~~~al~l~ 112 (253)
....|.-++..++..+|+..++++++..++....+.. +..+|...|+|.+.+++..+=+.+.
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A 73 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIA 73 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778889999999999999988887665554 4566888899999888766655543
No 314
>KOG2581|consensus
Probab=92.13 E-value=3.5 Score=36.16 Aligned_cols=102 Identities=12% Similarity=0.018 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----CC-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--CC--CcHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIK-----NP-VIPSYFTNRALCYLKLKQYVHCCDDCRKALEL--EP--SLVK 83 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-----~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p--~~~~ 83 (253)
+..|+-+...+-..|+...-...+...+.. +. .-+.+.+.+-.+|+..+.|+.|-....++.-- +. ...+
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 455666666677777765555555444433 11 23456777788999999999999888887632 12 2346
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 84 AQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.+|++|.+..-+++|..|.++|..|++..|..
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 68889999999999999999999999999973
No 315
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.12 E-value=2.3 Score=34.20 Aligned_cols=70 Identities=13% Similarity=0.044 Sum_probs=51.7
Q ss_pred ccHHHHHHHHHHHHhccCHH-------HHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC
Q psy11461 12 LSDKELKDEGNRYFGLRQYE-------EAINCYTRAIIKN--PV----IPSYFTNRALCYLKLKQYVHCCDDCRKALELE 78 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~-------~A~~~y~~ai~~~--p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 78 (253)
..|..+..+|-.|...|+-+ .|.+.|.+++... |. ...+.+.+|..+.+.|++++|.+++.+++...
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 45677777888888788744 4555555555443 22 35688899999999999999999999999864
Q ss_pred CCc
Q psy11461 79 PSL 81 (253)
Q Consensus 79 p~~ 81 (253)
..+
T Consensus 196 ~~s 198 (214)
T PF09986_consen 196 KAS 198 (214)
T ss_pred CCC
Confidence 433
No 316
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.76 E-value=1.4 Score=36.84 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (253)
..++..++..+...|+++.++..+++.+..+|.+-..|..+-..|++.|+...|+..|++.-.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3466778899999999999999999999999999999999999999999999999999887664
No 317
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=91.75 E-value=1.1 Score=33.49 Aligned_cols=46 Identities=11% Similarity=0.077 Sum_probs=22.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q psy11461 17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK 62 (253)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~ 62 (253)
....+...+..|+|.-|..+...++..+|++..+...++.++.+++
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555554443
No 318
>KOG1550|consensus
Probab=91.72 E-value=2.6 Score=39.04 Aligned_cols=94 Identities=17% Similarity=0.116 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcc-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 16 ELKDEGNRYFGLR-----QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK---QYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 16 ~~~~~g~~~~~~g-----~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
+...+|..|.+.. ++..|..+|.++... .++.+.+.+|.|+..-. ++..|..+|..|.. -.++.++++
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHH
Confidence 4567888888743 788899999999887 45667888899988765 57899999998876 367899999
Q ss_pred HHHHHHHh----CCHHHHHHHHHHHHhhch
Q psy11461 88 LGQALHEI----NHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 88 lg~~~~~~----~~~~~A~~~~~~al~l~p 113 (253)
+|.|+..= .+...|..++.++-+.++
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKGN 395 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence 99998653 378999999999999883
No 319
>KOG1839|consensus
Probab=91.70 E-value=3.5 Score=41.19 Aligned_cols=106 Identities=20% Similarity=0.180 Sum_probs=85.7
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL-- 77 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-- 77 (253)
..+|..+..+..++..+.+.|++++|+..-.++.-+ .|+....|.+++...+..++...|...+.++..+
T Consensus 967 ~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~ 1046 (1236)
T KOG1839|consen 967 VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKL 1046 (1236)
T ss_pred hcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhc
Confidence 356778888899999999999999999987777644 3456678999999999988888899988888776
Q ss_pred ------CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461 78 ------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 78 ------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p 113 (253)
.|.-.....+++..+..+++++.|+.++..|+...-
T Consensus 1047 Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1047 LSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred cccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 355555667888888888999999999999988543
No 320
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.61 E-value=1 Score=32.52 Aligned_cols=65 Identities=18% Similarity=0.131 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-------CCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIK-------NPVI----PSYFTNRALCYLKLKQYVHCCDDCRKALEL 77 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-------~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (253)
++..+-.++..+...|+|++++..-..++.. +.+. ..+.+++|.++-.+|+.++|+..|+.+.+.
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4556667888999999999999998888865 3333 346788999999999999999999998764
No 321
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.56 E-value=4.4 Score=35.49 Aligned_cols=97 Identities=18% Similarity=0.074 Sum_probs=76.1
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALC--YLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~--~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
..+......+....-.|+|+.|...|...+. +|.. ...-.+|.. -..+|..+.|+.+..++-...|.-..++...-
T Consensus 118 qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtL 195 (531)
T COG3898 118 QEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATL 195 (531)
T ss_pred chHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 3456677778888999999999999987664 4542 233333333 33588999999999999999999999988888
Q ss_pred HHHHHhCCHHHHHHHHHHHHh
Q psy11461 90 QALHEINHYDEAVKHLQRAYD 110 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~ 110 (253)
...+..|+|+.|++.+.....
T Consensus 196 e~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHhcCChHHHHHHHHHHHH
Confidence 889999999999998876544
No 322
>KOG3617|consensus
Probab=91.55 E-value=10 Score=36.62 Aligned_cols=64 Identities=13% Similarity=-0.005 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---------------------CCCCHHHHHHHHHHHHHhhCHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIK---------------------NPVIPSYFTNRALCYLKLKQYVHCCDDC 71 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~---------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~ 71 (253)
+...|...|..+-..|+.+.|+.+|..|-.. ...+-.+.+.+|..|-..|++.+|+..|
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4466777888888999999999999888543 2345567888999999999999999988
Q ss_pred HHHHh
Q psy11461 72 RKALE 76 (253)
Q Consensus 72 ~~al~ 76 (253)
.+|-.
T Consensus 991 TrAqa 995 (1416)
T KOG3617|consen 991 TRAQA 995 (1416)
T ss_pred HHHHH
Confidence 77643
No 323
>KOG2047|consensus
Probab=91.30 E-value=13 Score=34.86 Aligned_cols=100 Identities=11% Similarity=0.080 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC----------
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV----IPSYFTNRALCYLKLKQYVHCCDDCRKALELEP---------- 79 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p---------- 79 (253)
...|...|..|...|+.+.|...+++|+...-. -...|++-|..-+...+++.|.+..++|...-.
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 446777788888888888888888888776422 245677777777777788888888777766521
Q ss_pred --------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461 80 --------SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 80 --------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p 113 (253)
++.+.|..++...-..|-++.....|.+.+.+.-
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 1234556666666666777777777777777643
No 324
>KOG2422|consensus
Probab=91.24 E-value=9.1 Score=35.20 Aligned_cols=111 Identities=18% Similarity=0.115 Sum_probs=69.8
Q ss_pred ccCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh-----C-----------
Q psy11461 27 LRQYEEAINCYTRAIIK------------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL-----E----------- 78 (253)
Q Consensus 27 ~g~~~~A~~~y~~ai~~------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-----~----------- 78 (253)
...|++|...|.-++.. .|-+...+..+|.++..+|+.+-|.....++|-. .
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 44566666666666554 3445566777777777788777777766666532 1
Q ss_pred -----CCcH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh-cccchHHHHHHHHHHHHHHHHHH
Q psy11461 79 -----PSLV---KAQFFLGQALHEINHYDEAVKHLQRAYDLSRE-QNLNYGDDIACQLRIAKKKRWAE 137 (253)
Q Consensus 79 -----p~~~---~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~~~~~~~~ 137 (253)
|.|- .++++.-+.+...|.+..|.+.++-.+.++|. ++....--|.-+..+++.-.|..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI 398 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWII 398 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHH
Confidence 2222 23444455666678888888888888888887 66655555555555555555543
No 325
>KOG2042|consensus
Probab=91.17 E-value=0.19 Score=48.28 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=31.8
Q ss_pred cCCCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhc
Q psy11461 214 VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQEN 247 (253)
Q Consensus 214 ~g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n 247 (253)
++.+||+-|+||+.+++.||..||+-|+.|+.+.
T Consensus 904 s~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 904 SDCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred cCCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 7789999999999999999999999999999764
No 326
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.98 E-value=5.5 Score=35.92 Aligned_cols=98 Identities=11% Similarity=0.074 Sum_probs=69.2
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH-------------
Q psy11461 18 KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA------------- 84 (253)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a------------- 84 (253)
..--...+..|+...|......++...|..|.....++.++..+|.|+.+..+..-+-.+-....++
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh
Confidence 3344456778999999999999999999999999999999999999999888775543332111111
Q ss_pred ---------------------HHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 85 ---------------------QFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 85 ---------------------~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
...-+.....+|-++++.-.+++.+.++|..
T Consensus 373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 1111223344566788888999999998863
No 327
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.85 E-value=0.97 Score=40.47 Aligned_cols=59 Identities=14% Similarity=0.045 Sum_probs=34.5
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy11461 17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75 (253)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 75 (253)
....+.+.-..|+|+.+.....-+-..-.........+-....++++|++|.....-.+
T Consensus 326 i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l 384 (831)
T PRK15180 326 IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMML 384 (831)
T ss_pred hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 34456667777888888777655544333333344445555566666666666554443
No 328
>KOG1550|consensus
Probab=90.70 E-value=2.8 Score=38.82 Aligned_cols=99 Identities=21% Similarity=0.179 Sum_probs=75.6
Q ss_pred cHHHHHHHHHHHHh-----ccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHhh
Q psy11461 13 SDKELKDEGNRYFG-----LRQYEEAINCYTRAIIK-----NPVIPSYFTNRALCYLKLK-----QYVHCCDDCRKALEL 77 (253)
Q Consensus 13 ~a~~~~~~g~~~~~-----~g~~~~A~~~y~~ai~~-----~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~l 77 (253)
.+.+...+|.+++. .++.+.|+.+|..+... .-.++.+.+.+|.+|.+.. ++..|...+.++-.+
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 34455566776654 37899999999999771 1125668889999999843 678899999999886
Q ss_pred CCCcHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhhch
Q psy11461 78 EPSLVKAQFFLGQALHEIN---HYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 78 ~p~~~~a~~~lg~~~~~~~---~~~~A~~~~~~al~l~p 113 (253)
.++.+.+.+|.++..-. ++..|..+|..|...+-
T Consensus 323 --g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 323 --GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred --CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 46789999999987765 67899999999886643
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.55 E-value=3.4 Score=31.05 Aligned_cols=55 Identities=15% Similarity=-0.010 Sum_probs=46.7
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYV 65 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~ 65 (253)
|..+..-.--|..++..|+|.+|+..+.......+..+..--.+|.|+.-+|+.+
T Consensus 41 P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 41 PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 4455555668999999999999999999999988888888899999999888743
No 330
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=90.54 E-value=4.8 Score=28.64 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=50.0
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHHhCC-----------HHHHHHHHHHHHhhchhc
Q psy11461 54 RALCYLKLKQYVHCCDDCRKALELEPSLVK---AQFFLGQALHEINH-----------YDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 54 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~---a~~~lg~~~~~~~~-----------~~~A~~~~~~al~l~p~~ 115 (253)
+|.-++..|++-+|++..+..+..++++.. .+..-|.++..+.. .-.++++|.++..+.|..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence 577889999999999999999999888764 45556777766642 355789999999999886
No 331
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=90.37 E-value=2.3 Score=27.99 Aligned_cols=31 Identities=19% Similarity=0.125 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIK 43 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~ 43 (253)
.+..+...|..+=+.|++.+|+.+|+++|..
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4566777778888888888888888877654
No 332
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=89.96 E-value=10 Score=31.58 Aligned_cols=94 Identities=20% Similarity=0.151 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhc-----c--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461 16 ELKDEGNRYFGL-----R--QYEEAINCYTRAIIKNPVIPSYFTNRALCYLK----LKQYVHCCDDCRKALELEPSLVKA 84 (253)
Q Consensus 16 ~~~~~g~~~~~~-----g--~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a 84 (253)
....+|..+..- - +...|+..|.++-... ++.+..++|.+|.. ..++.+|..+|.+|-.... ..+
T Consensus 150 ~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a 225 (292)
T COG0790 150 AMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAA 225 (292)
T ss_pred HHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHH
Confidence 356666666554 1 3347999999988775 78899999988866 3489999999999999876 889
Q ss_pred HHHHHHHHHHhC---------------CHHHHHHHHHHHHhhchh
Q psy11461 85 QFFLGQALHEIN---------------HYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 85 ~~~lg~~~~~~~---------------~~~~A~~~~~~al~l~p~ 114 (253)
++.++ ++...| +...|...+.++....+.
T Consensus 226 ~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 226 CYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 99999 777666 555555555555544433
No 333
>KOG0529|consensus
Probab=89.89 E-value=3 Score=36.58 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=71.9
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh----CCHHHH
Q psy11461 28 RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK--QYVHCCDDCRKALELEPSLVKAQFFLGQALHEI----NHYDEA 101 (253)
Q Consensus 28 g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~----~~~~~A 101 (253)
.-+++-+.+...++..+|++..+|..|..++.+.+ +|..-++.|.++++.||.|..+|.++-.+.-.. ....+-
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E 168 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE 168 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence 35677788889999999999999999999998776 478889999999999999998876665444333 235677
Q ss_pred HHHHHHHHhhchhccc
Q psy11461 102 VKHLQRAYDLSREQNL 117 (253)
Q Consensus 102 ~~~~~~al~l~p~~~~ 117 (253)
+++..+++.-+++|..
T Consensus 169 l~ftt~~I~~nfSNYs 184 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNYS 184 (421)
T ss_pred HHHHHHHHhccchhhh
Confidence 7888888887777643
No 334
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.76 E-value=0.87 Score=37.68 Aligned_cols=45 Identities=22% Similarity=0.041 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 67 CCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 67 A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
|..+|.+|+.+.|.+...|..+|.++...|+.-.|+=+|-+++-.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~ 45 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV 45 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhc
Confidence 678999999999999999999999999999999999999999855
No 335
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.34 E-value=9.3 Score=30.20 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhhCCC-cHH--HHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy11461 51 FTNRALCYLKLKQYVHCCDDCRKALELEPS-LVK--AQFFLGQALHEINHYDEAVKHLQRAY 109 (253)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-~~~--a~~~lg~~~~~~~~~~~A~~~~~~al 109 (253)
-..+|..+...+++++|+..++.++....+ +.+ +-.++|.+...+|.+++|+..+....
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 445788889999999999999999965333 333 45788999999999999998876543
No 336
>KOG2422|consensus
Probab=89.29 E-value=6.8 Score=35.96 Aligned_cols=78 Identities=13% Similarity=0.114 Sum_probs=57.9
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---------------------CCCCHHHHHH---HHHHHHHhh
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK---------------------NPVIPSYFTN---RALCYLKLK 62 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~---------------------~p~~~~~~~~---~a~~~~~~~ 62 (253)
...+|-....+..++.++..+|+.+-|.+...+++=. +|.|-.+|.. .-..+.+.|
T Consensus 277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RG 356 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRG 356 (665)
T ss_pred eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 4466888889999999999999999999998888733 2333333322 233445688
Q ss_pred CHHHHHHHHHHHHhhCCC-cHHH
Q psy11461 63 QYVHCCDDCRKALELEPS-LVKA 84 (253)
Q Consensus 63 ~~~~A~~~~~~al~l~p~-~~~a 84 (253)
-|.-|..+|+-.++++|. ++-+
T Consensus 357 C~rTA~E~cKlllsLdp~eDPl~ 379 (665)
T KOG2422|consen 357 CWRTALEWCKLLLSLDPSEDPLG 379 (665)
T ss_pred ChHHHHHHHHHHhhcCCcCCchh
Confidence 899999999999999997 5433
No 337
>KOG2300|consensus
Probab=89.07 E-value=17 Score=32.89 Aligned_cols=93 Identities=20% Similarity=0.141 Sum_probs=49.6
Q ss_pred ccHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhh-CHHHHHHHHHHHHhhCCCcH
Q psy11461 12 LSDKELKDEGNRYFG-LRQYEEAINCYTRAIIKNPVIP-------SYFTNRALCYLKLK-QYVHCCDDCRKALELEPSLV 82 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~-~g~~~~A~~~y~~ai~~~p~~~-------~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~ 82 (253)
-.+.....+|..++. ..+++.|..++++|..+-..-+ .++..++.+|.... .+..+...+++++++...++
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p 123 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP 123 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence 344555555555543 4555666666666554422211 23455566665555 55566666666666654433
Q ss_pred ----HHHHHHHHHHHHhCCHHHHHHH
Q psy11461 83 ----KAQFFLGQALHEINHYDEAVKH 104 (253)
Q Consensus 83 ----~a~~~lg~~~~~~~~~~~A~~~ 104 (253)
+.++.+++.+.-..++..|++.
T Consensus 124 ~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 124 YWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred hhhHHHHHHHHHHHhhhccchhHHHH
Confidence 3345555555555666665554
No 338
>KOG1914|consensus
Probab=89.05 E-value=3 Score=37.91 Aligned_cols=104 Identities=11% Similarity=0.011 Sum_probs=78.3
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 86 (253)
+.++|.+..+|+.+-..+-.+ .+++..+.|.+.+...|..+.+|.......+..++|+...+.|.+++.-- -+...|.
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-LnlDLW~ 90 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-LNLDLWK 90 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhHhHHH
Confidence 457889999999998888777 99999999999999999999999999999999999999999999988632 2234432
Q ss_pred -HHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461 87 -FLGQALHEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 87 -~lg~~~~~~~~~~~A~~~~~~al~l~ 112 (253)
.+..+-.-.|+...+.....+|..+.
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~ 117 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFA 117 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHH
Confidence 23334444455555555555555543
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.83 E-value=4.2 Score=36.54 Aligned_cols=83 Identities=20% Similarity=0.148 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL 92 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 92 (253)
+...|..+|..+..+|+++-|+.+|.++-. +..+...|.-.|+-+.-.+....|......+ ..-.++
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n-----~af~~~ 412 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGDIN-----IAFQAA 412 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HH-----HHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccCHH-----HHHHHH
Confidence 445566666666666666666666665422 3344445555555544444444443322211 112344
Q ss_pred HHhCCHHHHHHHHHHH
Q psy11461 93 HEINHYDEAVKHLQRA 108 (253)
Q Consensus 93 ~~~~~~~~A~~~~~~a 108 (253)
+.+|+.+++++.+.++
T Consensus 413 ~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 413 LLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHT-HHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHc
Confidence 4556666655555443
No 340
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=88.60 E-value=20 Score=33.10 Aligned_cols=94 Identities=20% Similarity=0.055 Sum_probs=73.1
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q psy11461 28 RQYEEAINCYTRAIIKNPVIPSYFTN--RALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHL 105 (253)
Q Consensus 28 g~~~~A~~~y~~ai~~~p~~~~~~~~--~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 105 (253)
|.-..++..|...+..+|.++.+... +...+...+....+......++..+|++..++.+||.++...|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 33344788888888888888876433 5788888899999999999999999999999999999988887766655555
Q ss_pred HH-HHhhchhcccchHH
Q psy11461 106 QR-AYDLSREQNLNYGD 121 (253)
Q Consensus 106 ~~-al~l~p~~~~~~~~ 121 (253)
.. +....|.+...++.
T Consensus 125 ~~~a~~~~~~~~~~~~~ 141 (620)
T COG3914 125 SEIAEWLSPDNAEFLGH 141 (620)
T ss_pred HHHHHhcCcchHHHHhh
Confidence 44 88888887544433
No 341
>KOG2047|consensus
Probab=88.25 E-value=23 Score=33.30 Aligned_cols=101 Identities=14% Similarity=0.041 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC--CcHHHHHH---HH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP--SLVKAQFF---LG 89 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--~~~~a~~~---lg 89 (253)
..|..++...-..|-++..-..|.+.|.+.-..|..-.|.|..+-...-++++.+.|++.|.+.+ .-...|.. ..
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkf 557 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKF 557 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHH
Confidence 45556677777788899999999999999888999999999999888899999999999999874 33334332 33
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
..-+.-.+.+.|...|++|++.+|..
T Consensus 558 i~rygg~klEraRdLFEqaL~~Cpp~ 583 (835)
T KOG2047|consen 558 IKRYGGTKLERARDLFEQALDGCPPE 583 (835)
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCCHH
Confidence 33333347899999999999999853
No 342
>KOG4814|consensus
Probab=88.25 E-value=3.8 Score=38.06 Aligned_cols=68 Identities=24% Similarity=0.230 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 49 SYFTNRALCYLKLKQYVHCCDDCRKALELEPS------LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
.++.|-|.-+++..+|..++++|...+.--|. ..+....++.||..+.+.+.|++++..|-+.+|.++
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence 35667788899999999999999999876554 357788899999999999999999999999998863
No 343
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=88.20 E-value=11 Score=37.27 Aligned_cols=97 Identities=11% Similarity=0.094 Sum_probs=73.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhh-------CHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 20 EGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLK-------QYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 20 ~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~-------~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
..+.+...+.|+.|+..|++...-.|.. -.+.+..|.+.+.+- .+++|+..|++... .|.-+--|...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHH
Confidence 4567788899999999999999888864 356777777777543 35556555554432 344555567777
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
.+|..+|+|++-+++|.-|++-.|..+.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 8899999999999999999999988754
No 344
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=88.09 E-value=1.2 Score=39.36 Aligned_cols=60 Identities=12% Similarity=0.229 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhhC---------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 51 FTNRALCYLKLKQYVHCCDDCRKALELE---------PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~---------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
...+..++.-+|+|..|++.++.. .++ +.++..+|..|.+|..+++|.+|++.|...+-.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777899999999887543 222 345677999999999999999999999987754
No 345
>KOG1914|consensus
Probab=88.02 E-value=11 Score=34.44 Aligned_cols=74 Identities=11% Similarity=0.012 Sum_probs=66.2
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461 38 TRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 38 ~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 112 (253)
++-|+.+|.+...|+.+-.-+..+ .++++...|++.+...|.++.+|.......+...+|+.-...|.++|..-
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 567889999999999987766555 89999999999999999999999999999999999999999999988643
No 346
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.77 E-value=4.3 Score=32.18 Aligned_cols=71 Identities=15% Similarity=0.096 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHhCCHHHHH
Q psy11461 31 EEAINCYTRAIIK-NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS----LVKAQFFLGQALHEINHYDEAV 102 (253)
Q Consensus 31 ~~A~~~y~~ai~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~~~lg~~~~~~~~~~~A~ 102 (253)
..|...|-++=.. .-+++.+.+.+|..|. ..+..+++..+.+++++.+. |+..+..|+.++..+|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4455555443221 1246788888887776 67889999999999998543 5888999999999999998874
No 347
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=87.75 E-value=6.2 Score=34.91 Aligned_cols=95 Identities=12% Similarity=0.032 Sum_probs=58.7
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 19 DEGNRYFGLRQYEEAINCYTRAIIK---------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 19 ~~g~~~~~~g~~~~A~~~y~~ai~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
.+.+.+.-.|||..|++..... .+ -+-....++..|-||+-+++|.+|++.|..++---......+....
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~ 205 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRS 205 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 3556677889999999986543 11 2234567889999999999999999999998753111110111111
Q ss_pred HHH-HHhCCHHHHHHHHHHHHhhchh
Q psy11461 90 QAL-HEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 90 ~~~-~~~~~~~~A~~~~~~al~l~p~ 114 (253)
.-+ .-.+..+.....+--++.++|.
T Consensus 206 ~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 206 YQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred chhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 111 1123345555566666677775
No 348
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=87.67 E-value=3.4 Score=33.95 Aligned_cols=83 Identities=11% Similarity=0.049 Sum_probs=57.2
Q ss_pred ccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHH
Q psy11461 27 LRQYEEAINCYTRAIIKN------PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS------LVKAQFFLGQALHE 94 (253)
Q Consensus 27 ~g~~~~A~~~y~~ai~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~------~~~a~~~lg~~~~~ 94 (253)
-..-...|+++.+|+... ---..+...+|.-|+..|+|++|.+.++.+...... ....+..+..|+..
T Consensus 151 ~~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~ 230 (247)
T PF11817_consen 151 VDHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKR 230 (247)
T ss_pred cchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 344444455555544432 235667788999999999999999999998655321 23567778889999
Q ss_pred hCCHHHHHHHHHHHH
Q psy11461 95 INHYDEAVKHLQRAY 109 (253)
Q Consensus 95 ~~~~~~A~~~~~~al 109 (253)
+|+.+..+.+.-+.+
T Consensus 231 ~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 231 LGDVEDYLTTSLELL 245 (247)
T ss_pred hCCHHHHHHHHHHHh
Confidence 999888877765544
No 349
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.48 E-value=21 Score=32.05 Aligned_cols=97 Identities=11% Similarity=0.032 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS-----YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~-----~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
-.++..|..+-+++++.+|...|.+....-.+.+. ++.+|-..-+-+++.+.-.......-+..|..+......|
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~ 86 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKA 86 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 45678899999999999999999999877655543 4445555555566767666666555566788888888889
Q ss_pred HHHHHhCCHHHHHHHHHHHHhh
Q psy11461 90 QALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l 111 (253)
...+..+.|..|++.+......
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~ 108 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQ 108 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhh
Confidence 9999999999999998877665
No 350
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.33 E-value=1.8 Score=38.11 Aligned_cols=61 Identities=20% Similarity=0.203 Sum_probs=55.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461 17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77 (253)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (253)
--.+..+|.+.++.+.|+..-.+.|.++|....-+...|.|+..+.+|.+|.+.+--|.-+
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999999999999988777544
No 351
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.30 E-value=8.3 Score=31.16 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=36.2
Q ss_pred HHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 58 YLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 58 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+++-+...+++...+.-++-.|.+......+-+.++-.|+|+.|..-++-+-++.|+.
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 4455556666666666666666666555555666666666666666666666666654
No 352
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=87.02 E-value=2 Score=22.17 Aligned_cols=29 Identities=28% Similarity=0.247 Sum_probs=19.0
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy11461 28 RQYEEAINCYTRAIIKNPVIPSYFTNRAL 56 (253)
Q Consensus 28 g~~~~A~~~y~~ai~~~p~~~~~~~~~a~ 56 (253)
|+++.|...|.+++...|.++.+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45666777777777777776666665543
No 353
>KOG0529|consensus
Probab=86.94 E-value=17 Score=32.11 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=73.7
Q ss_pred HhccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------hhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461 25 FGLRQYE-EAINCYTRAIIKNPVIPSYFTNRALCYLK------------LKQYVHCCDDCRKALELEPSLVKAQFFLGQA 91 (253)
Q Consensus 25 ~~~g~~~-~A~~~y~~ai~~~p~~~~~~~~~a~~~~~------------~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 91 (253)
...|.|+ +++..-.+.+..+|....+|+-+=.++.. +.-+++-+.....++..+|++..+|+.+..+
T Consensus 39 r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~ 118 (421)
T KOG0529|consen 39 REAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWV 118 (421)
T ss_pred HhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 4456664 57777777888899988887766555443 2346677788888999999999999999999
Q ss_pred HHHhC--CHHHHHHHHHHHHhhchhcccc
Q psy11461 92 LHEIN--HYDEAVKHLQRAYDLSREQNLN 118 (253)
Q Consensus 92 ~~~~~--~~~~A~~~~~~al~l~p~~~~~ 118 (253)
+...+ ++..-++.+.++++.+|.+...
T Consensus 119 L~~~p~~~~~~EL~lcek~L~~D~RNfh~ 147 (421)
T KOG0529|consen 119 LQKNPHSDWNTELQLCEKALKQDPRNFHA 147 (421)
T ss_pred HHhCCCchHHHHHHHHHHHHhcCcccccc
Confidence 99876 4688899999999999987554
No 354
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.91 E-value=4.2 Score=32.22 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=27.2
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 80 SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 80 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+++...+.+|.-|. ..+.+.++..+.+++++.+.+
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~ 173 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD 173 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC
Confidence 46677777776665 678889999999999987765
No 355
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.62 E-value=16 Score=29.65 Aligned_cols=63 Identities=10% Similarity=-0.041 Sum_probs=56.9
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH
Q psy11461 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK 83 (253)
Q Consensus 21 g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (253)
...+.+.+...+||.....-++..|.+......+-..+.-.|+|++|..-++-+-.+.|+...
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 446778899999999999999999999999888889999999999999999999999998643
No 356
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.53 E-value=21 Score=31.13 Aligned_cols=103 Identities=14% Similarity=0.109 Sum_probs=79.2
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------------C------------CCCHH---HHHHHHHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------------N------------PVIPS---YFTNRALCY 58 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------------~------------p~~~~---~~~~~a~~~ 58 (253)
..+|-....+.+++.++..+|++..|.+..++|+-. + +.|-. +.+.....+
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L 113 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL 113 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence 456778889999999999999999999999998643 1 12222 345567778
Q ss_pred HHhhCHHHHHHHHHHHHhhCCC-cHH-HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy11461 59 LKLKQYVHCCDDCRKALELEPS-LVK-AQFFLGQALHEINHYDEAVKHLQRAYD 110 (253)
Q Consensus 59 ~~~~~~~~A~~~~~~al~l~p~-~~~-a~~~lg~~~~~~~~~~~A~~~~~~al~ 110 (253)
.+.|-|.-|.++|+-.+.+||. ++- +.+.+-......++|+--+..+.....
T Consensus 114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 8899999999999999999998 664 455555666777888777777776554
No 357
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.48 E-value=7.3 Score=30.23 Aligned_cols=67 Identities=12% Similarity=0.075 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 48 PSYFTNRALCYLKLKQYVHCCDDCRKALELEPS---LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
..++..+|.-|.+.|++++|++.|.++..-... -...++.+-.+.+..+++.....++.++-.+-..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK 105 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 357889999999999999999999998775433 2456777788888899999999998888776433
No 358
>KOG1839|consensus
Probab=86.09 E-value=2.7 Score=41.95 Aligned_cols=100 Identities=20% Similarity=0.176 Sum_probs=83.9
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC------
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAIN------CYTRA-IIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE------ 78 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~------~y~~a-i~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~------ 78 (253)
..+......|......|.+.+|.+ .+... -.++|..+..|..+|..+.+++++++|+....++.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 567778889999999999998888 44422 23478889999999999999999999999998887552
Q ss_pred --CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 79 --PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 79 --p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
|+....+.+++...+..++...|...+.+++.+
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 566788999999999999999999999988876
No 359
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.01 E-value=1.7 Score=25.31 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Q psy11461 86 FFLGQALHEINHYDEAVKHLQRAYD 110 (253)
Q Consensus 86 ~~lg~~~~~~~~~~~A~~~~~~al~ 110 (253)
+.+|.+|..+|+.+.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566666666666666666666663
No 360
>KOG0546|consensus
Probab=85.84 E-value=0.75 Score=39.36 Aligned_cols=78 Identities=15% Similarity=0.042 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA 91 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 91 (253)
.....+.+.+-++.+.+..|+..-..++..+++...+++.++..+..+.++++|++++..+....|++....-.+..+
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 334555777888899999999998888888999999999999999999999999999999999999987655444433
No 361
>KOG2041|consensus
Probab=85.73 E-value=4.1 Score=38.30 Aligned_cols=84 Identities=17% Similarity=0.230 Sum_probs=61.1
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA 91 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 91 (253)
..-.++.++|..+.....|.+|.++|.++-. .-+.+.|++.+..|++-....+ .-|++.+.+-.+|..
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~la~----~Lpe~s~llp~~a~m 861 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEVLAR----TLPEDSELLPVMADM 861 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHHHHH----hcCcccchHHHHHHH
Confidence 3456788999999999999999999987643 3467888888888887554443 336676777777777
Q ss_pred HHHhCCHHHHHHHHHH
Q psy11461 92 LHEINHYDEAVKHLQR 107 (253)
Q Consensus 92 ~~~~~~~~~A~~~~~~ 107 (253)
+...|.-++|++.|.+
T Consensus 862 f~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 862 FTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHhhchHHHHHHHHHh
Confidence 7777777777665544
No 362
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=85.57 E-value=10 Score=31.09 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc-ccchHHHHHHHHHHHHHHH
Q psy11461 83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ-NLNYGDDIACQLRIAKKKR 134 (253)
Q Consensus 83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~~ 134 (253)
.....+|.-|+..|++++|++.|+.+...-... ...+...+...+..|....
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 345678899999999999999999997665433 3456666666666665543
No 363
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.41 E-value=4.4 Score=34.09 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (253)
.+...+..|...|.+.+|+++-++++.++|-+...+..+-..+..+|+--.+++.|.+-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34456677889999999999999999999999999999999999999977777777653
No 364
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.39 E-value=1.7 Score=25.36 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461 52 TNRALCYLKLKQYVHCCDDCRKALEL 77 (253)
Q Consensus 52 ~~~a~~~~~~~~~~~A~~~~~~al~l 77 (253)
.++|.+|..+|+++.|...++.++.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999953
No 365
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.18 E-value=8.1 Score=25.40 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhhchhc
Q psy11461 100 EAVKHLQRAYDLSREQ 115 (253)
Q Consensus 100 ~A~~~~~~al~l~p~~ 115 (253)
+|++.+.+++...|++
T Consensus 31 ~aIe~L~q~~~~~pD~ 46 (75)
T cd02682 31 KAIEVLSQIVKNYPDS 46 (75)
T ss_pred HHHHHHHHHHHhCCCh
Confidence 4444555566666654
No 366
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=84.73 E-value=4.5 Score=30.19 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCH
Q psy11461 49 SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHY 98 (253)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~ 98 (253)
.....+|...+..|++.-|...+..++..+|+|..+...++.++.++|.-
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 45666777888889999999999999999999999988888888877643
No 367
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=83.74 E-value=2.6 Score=26.97 Aligned_cols=30 Identities=30% Similarity=0.268 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIK 43 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~ 43 (253)
+..+...|..+=..|+|.+|+.+|++++..
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445556666666677777777777766653
No 368
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=83.45 E-value=1.2 Score=41.08 Aligned_cols=34 Identities=26% Similarity=0.526 Sum_probs=31.3
Q ss_pred cCCCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhc
Q psy11461 214 VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQEN 247 (253)
Q Consensus 214 ~g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n 247 (253)
++.+||..|-||+.++..||-.||+-|-.|+...
T Consensus 888 sd~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k 921 (929)
T COG5113 888 SDGTDPFNRMPLTLDDVTPNAELREKINRFYKCK 921 (929)
T ss_pred cCCCCccccCCCchhhcCCCHHHHHHHHHHHhcc
Confidence 7789999999999999999999999999998543
No 369
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=83.41 E-value=0.59 Score=27.38 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=15.7
Q ss_pred CCCCCCcCcHHHHHHHHHHhhhcCcccCC
Q psy11461 225 LSADQLIPNFAMKEVVDNFLQENDWAYEY 253 (253)
Q Consensus 225 l~~~~l~pN~~lk~a~~~~l~~n~wa~~~ 253 (253)
.-.+.-.||- =-+++.+||+++||-|+|
T Consensus 18 y~vT~~~s~~-~L~k~~~wld~rgWwYe~ 45 (45)
T PF12123_consen 18 YFVTDPLSDA-ELDKFTAWLDERGWWYEV 45 (45)
T ss_dssp EEEE----HH-HHHHHHHHHHHTT--EEE
T ss_pred EEEeCCCCHH-HHHHHHHHHHhcCcEEeC
Confidence 3344445663 346789999999999975
No 370
>KOG0985|consensus
Probab=83.41 E-value=16 Score=36.26 Aligned_cols=58 Identities=14% Similarity=0.026 Sum_probs=43.0
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (253)
..+..|..+|....+.|...+||+.|-+| +++..|...-.+..+.|.|++-+.++.-|
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45678888999999999999999998775 45556666666666777777766665433
No 371
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=83.27 E-value=0.45 Score=33.45 Aligned_cols=19 Identities=16% Similarity=0.422 Sum_probs=8.1
Q ss_pred cCCCCCCCCCCCCCCCCcC
Q psy11461 214 VGHFDPVTRVKLSADQLIP 232 (253)
Q Consensus 214 ~g~~DP~tr~~l~~~~l~p 232 (253)
-|..+|+||+|+++++++.
T Consensus 79 ~~~~HPLSREpit~sMIv~ 97 (113)
T PF06416_consen 79 EGAPHPLSREPITPSMIVS 97 (113)
T ss_dssp CT---TTT-----TTTEE-
T ss_pred cCCCCCCccCCCChhhEec
Confidence 5567999999999998753
No 372
>KOG1310|consensus
Probab=82.25 E-value=4.5 Score=36.83 Aligned_cols=75 Identities=15% Similarity=-0.020 Sum_probs=62.6
Q ss_pred CCCcccHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH
Q psy11461 8 TTNNLSDKELKDEGNRYFGL---RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV 82 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~---g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 82 (253)
+..|.....+.+.+..++++ |+.-.|+.....|+.++|....+++.++.++..++++.+|+.+...+....|.+.
T Consensus 402 q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 402 QYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred hhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 34566677788888888774 5666788888899999999999999999999999999999999988888888543
No 373
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=81.02 E-value=9.1 Score=27.83 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTRAIIK 43 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~ 43 (253)
.+..+|+..++.+++-.+|-+|++|+.+
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 3567889999999999999999999876
No 374
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.66 E-value=51 Score=30.98 Aligned_cols=105 Identities=16% Similarity=0.090 Sum_probs=76.1
Q ss_pred CCCcccHHHHHHHHHHHH-hccCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC
Q psy11461 8 TTNNLSDKELKDEGNRYF-GLRQYEEAINCYTRAIIKNPV--IP----SYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~y~~ai~~~p~--~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 80 (253)
.+....+...+.+|..++ .-.+++.|..++.+++.+... .. .+.+.++.++.+.+... |...++++|+...+
T Consensus 53 l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 53 LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 344567889999999998 578999999999999888643 22 23456688888877766 99999999986544
Q ss_pred ----cHHHHHHHH--HHHHHhCCHHHHHHHHHHHHhhch
Q psy11461 81 ----LVKAQFFLG--QALHEINHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 81 ----~~~a~~~lg--~~~~~~~~~~~A~~~~~~al~l~p 113 (253)
...-.+++- ..+...+++..|++.++....+..
T Consensus 132 ~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 132 YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN 170 (608)
T ss_pred cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 222223332 222233799999999999988764
No 375
>KOG0289|consensus
Probab=80.26 E-value=0.82 Score=40.04 Aligned_cols=31 Identities=29% Similarity=0.553 Sum_probs=23.2
Q ss_pred HHHHHH--HHhhchhcCCCCCCCCCCCCCCCCcC
Q psy11461 201 NDLFVA--IDERRRKVGHFDPVTRVKLSADQLIP 232 (253)
Q Consensus 201 ~~~f~~--~~~~~~~~g~~DP~tr~~l~~~~l~p 232 (253)
+.+|++ +...-..+|. ||+|-+||+.++|+|
T Consensus 20 g~vfEkrLIEqyI~e~G~-DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 20 GHVFEKRLIEQYIAETGK-DPITNEPLSIEELVE 52 (506)
T ss_pred cchHHHHHHHHHHHHcCC-CCCCCCcCCHHHeee
Confidence 556653 4444556885 999999999999886
No 376
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.17 E-value=29 Score=32.55 Aligned_cols=95 Identities=11% Similarity=0.093 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-------CC---C----------------HHHHHHHHHHHHHhhCHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKN-------PV---I----------------PSYFTNRALCYLKLKQYVHC 67 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~-------p~---~----------------~~~~~~~a~~~~~~~~~~~A 67 (253)
+..++--|..+...|..+.|.+++.+++..- +. . ..+....+.+.+-.++|..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 4456666777788888878888888887651 11 0 01345567777789999999
Q ss_pred HHHHHHHHhhCC---C------cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy11461 68 CDDCRKALELEP---S------LVKAQFFLGQALHEINHYDEAVKHLQRA 108 (253)
Q Consensus 68 ~~~~~~al~l~p---~------~~~a~~~lg~~~~~~~~~~~A~~~~~~a 108 (253)
......+..... . .+..+|..|..+...|+.+.|+..|.+.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~ 430 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKP 430 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhh
Confidence 999988776532 2 3677899999999999999999999833
No 377
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=80.00 E-value=11 Score=24.86 Aligned_cols=17 Identities=35% Similarity=0.344 Sum_probs=9.4
Q ss_pred hCCHHHHHHHHHHHHhh
Q psy11461 95 INHYDEAVKHLQRAYDL 111 (253)
Q Consensus 95 ~~~~~~A~~~~~~al~l 111 (253)
.|+|++|+.+|..+++.
T Consensus 19 ~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 19 EGRYSEAVFYYKEAAQL 35 (76)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 45556655555555543
No 378
>PF12854 PPR_1: PPR repeat
Probab=79.86 E-value=5.4 Score=21.51 Aligned_cols=25 Identities=8% Similarity=-0.067 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHH
Q psy11461 48 PSYFTNRALCYLKLKQYVHCCDDCR 72 (253)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~ 72 (253)
...|+.+-..|.+.|+.++|.+.++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3445555555555555555555544
No 379
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=79.12 E-value=16 Score=27.08 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=46.5
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q psy11461 27 LRQYEEAINCYTRAIIKNPVIPSYFTNRAL-CYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHL 105 (253)
Q Consensus 27 ~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 105 (253)
-|+...-+.+|...- ... =|..+|. .+..+|+-+.--+.+....+-...++..++.+|.+|..+|+..++-+.+
T Consensus 69 C~NlKrVi~C~~~~n----~~s-e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 69 CGNLKRVIECYAKRN----KLS-EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp -S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hcchHHHHHHHHHhc----chH-HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 455556666665431 222 2444444 4445666666666666666555667888888999999999999998888
Q ss_pred HHHHhhc
Q psy11461 106 QRAYDLS 112 (253)
Q Consensus 106 ~~al~l~ 112 (253)
++|-+.+
T Consensus 144 ~~ACekG 150 (161)
T PF09205_consen 144 KEACEKG 150 (161)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 8887654
No 380
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.60 E-value=5.1 Score=26.42 Aligned_cols=30 Identities=17% Similarity=0.089 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIK 43 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~ 43 (253)
+..+...|..+=+.|+|.+|+.+|..+|..
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444555566666666666666666666653
No 381
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=78.51 E-value=9.4 Score=31.00 Aligned_cols=91 Identities=19% Similarity=0.172 Sum_probs=53.4
Q ss_pred HhccCHHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHHhhCH-HHHH-HHHHHHHh-h-CCCcHH--HHH
Q psy11461 25 FGLRQYEEAINCYTRAIIKNPVIPS------------YFTNRALCYLKLKQY-VHCC-DDCRKALE-L-EPSLVK--AQF 86 (253)
Q Consensus 25 ~~~g~~~~A~~~y~~ai~~~p~~~~------------~~~~~a~~~~~~~~~-~~A~-~~~~~al~-l-~p~~~~--a~~ 86 (253)
|-.|+|+.|++...-||..+-..|. -...-|......|.. +-.. ..+..+.. . -|+-+. -|-
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 5679999999999999988533222 122223333344432 1111 11111111 1 144444 455
Q ss_pred HHHHHHH---------HhCCHHHHHHHHHHHHhhchhc
Q psy11461 87 FLGQALH---------EINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 87 ~lg~~~~---------~~~~~~~A~~~~~~al~l~p~~ 115 (253)
..|..++ ..++...|+.++++|+.++|+.
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 5676663 3467889999999999999885
No 382
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.49 E-value=16 Score=23.99 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=14.4
Q ss_pred HhCCHHHHHHHHHHHHhhch
Q psy11461 94 EINHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 94 ~~~~~~~A~~~~~~al~l~p 113 (253)
..|+|++|+..|..|+++.-
T Consensus 18 ~~gny~eA~~lY~~ale~~~ 37 (75)
T cd02680 18 EKGNAEEAIELYTEAVELCI 37 (75)
T ss_pred HhhhHHHHHHHHHHHHHHHH
Confidence 45778888888888777643
No 383
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.32 E-value=47 Score=29.22 Aligned_cols=62 Identities=11% Similarity=0.054 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHH--HhhCHHHHHHHHHHHHh
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP--SYFTNRALCYL--KLKQYVHCCDDCRKALE 76 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~--~~~~~~a~~~~--~~~~~~~A~~~~~~al~ 76 (253)
......+..+|+.++|..|...+......-|... ..+..++.+|. ..-++.+|...++..+.
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556788899999999999999999988523332 35555555554 46678899998887665
No 384
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=77.79 E-value=6.6 Score=20.08 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=18.8
Q ss_pred hCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 62 KQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 62 ~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
|+++.|...|++++...|.++..|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 3466677777777777777776665544
No 385
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=76.95 E-value=12 Score=24.52 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=9.5
Q ss_pred CCHHHHHHHHHHHHhh
Q psy11461 96 NHYDEAVKHLQRAYDL 111 (253)
Q Consensus 96 ~~~~~A~~~~~~al~l 111 (253)
|+|++|..+|..+++.
T Consensus 20 ~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 20 GDYEAAFEFYRAGVDL 35 (75)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 5666666666665543
No 386
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=76.06 E-value=10 Score=24.69 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIK 43 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~ 43 (253)
.+..+...|...=..|+|++|+.+|.+++..
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3566777788888888888888888888765
No 387
>PF12854 PPR_1: PPR repeat
Probab=76.05 E-value=8 Score=20.84 Aligned_cols=27 Identities=19% Similarity=0.059 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy11461 81 LVKAQFFLGQALHEINHYDEAVKHLQR 107 (253)
Q Consensus 81 ~~~a~~~lg~~~~~~~~~~~A~~~~~~ 107 (253)
|...|..+-..+.+.|+.++|.+.|.+
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 556788888999999999999998874
No 388
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.19 E-value=38 Score=26.52 Aligned_cols=109 Identities=9% Similarity=0.008 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhhCHHHHHHHHHHHH-hhCCCcHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP----SYFTNRALCYLKLKQYVHCCDDCRKAL-ELEPSLVKAQFFL 88 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al-~l~p~~~~a~~~l 88 (253)
..+....|......|+-..|+..|..+-...|.-. .+...-|..+...|-|+....-.+..- .-+|-...+.--|
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL 173 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL 173 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence 45677889999999999999999999877654311 234445677778889998766554432 2344456677889
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHH
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDI 123 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 123 (253)
|.+.++.|++..|...|..... +...+.+..+..
T Consensus 174 glAa~kagd~a~A~~~F~qia~-Da~aprnirqRA 207 (221)
T COG4649 174 GLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRA 207 (221)
T ss_pred hHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHH
Confidence 9999999999999999998876 444444444333
No 389
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=75.16 E-value=12 Score=24.37 Aligned_cols=31 Identities=32% Similarity=0.360 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIK 43 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~ 43 (253)
.+..+...|..+=..|++++|+.+|..++..
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666777777788888888888877754
No 390
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.75 E-value=15 Score=28.65 Aligned_cols=50 Identities=20% Similarity=0.089 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 64 YVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 64 ~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
....++..++.+...| ++..+.+++.++..+|+.++|.....++..+-|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3444556666666666 5677777788888888888888888888888774
No 391
>KOG0985|consensus
Probab=74.11 E-value=40 Score=33.68 Aligned_cols=90 Identities=20% Similarity=0.131 Sum_probs=68.4
Q ss_pred HHHHHHhccCHHHHHHHHHH------HHHh----------------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461 20 EGNRYFGLRQYEEAINCYTR------AIIK----------------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77 (253)
Q Consensus 20 ~g~~~~~~g~~~~A~~~y~~------ai~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (253)
.|+.....+-|++|...|++ |+.. .-+.+..|..+|.+.++.+...+|+..|-+|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 56666667777777776654 2211 2246778999999999999999999999655
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 78 EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 78 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
+++..|...-.+....|+|++-++++..|.+...+
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E 1165 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE 1165 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC
Confidence 56677888888888899999999999888776544
No 392
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=73.89 E-value=23 Score=23.37 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIK 43 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~ 43 (253)
..+..+...|..+=..|+|.+|+.+|.++|..
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566777888888888888888888888764
No 393
>KOG1258|consensus
Probab=73.35 E-value=79 Score=29.37 Aligned_cols=105 Identities=10% Similarity=0.043 Sum_probs=83.8
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC-CCcHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE-PSLVKAQFFLG 89 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~lg 89 (253)
+.+-..|......-...|++....-.|..++--......+|.+.+......|+.+-|-..+.++.++. |..+..+..-+
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 34445566666677789999999999999988877888899999988888898888888888887764 55666666667
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
..--..|++..|...+++...-.|+.
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~pg~ 399 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEYPGL 399 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhCCch
Confidence 77777889999999999988877765
No 394
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=71.76 E-value=63 Score=32.10 Aligned_cols=102 Identities=18% Similarity=0.164 Sum_probs=67.3
Q ss_pred ccHHHHHHHHHHHHhc-------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461 12 LSDKELKDEGNRYFGL-------RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA 84 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~-------g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (253)
.--.+.+..|.....+ ..+.+|+.-|.+.- -.|.-|-=|...|.+|..+|+|++-++++.-|++..|+.+..
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 510 EGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred cchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 3344555556555432 23555555555432 235556678999999999999999999999999998887654
Q ss_pred H-------HHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 85 Q-------FFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 85 ~-------~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
- +++-.+... +-..|.....-++...|...
T Consensus 589 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 589 SRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEKI 625 (932)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcccc
Confidence 3 333333332 33567777777888888753
No 395
>KOG3783|consensus
Probab=71.16 E-value=58 Score=29.86 Aligned_cols=66 Identities=12% Similarity=0.073 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhh---CCC----cHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhhchhc
Q psy11461 50 YFTNRALCYLKLKQYVHCCDDCRKALEL---EPS----LVKAQFFLGQALHEINH-YDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l---~p~----~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~l~p~~ 115 (253)
-+..+|.++..+|+...|..++..+++- ... -+-|+|-+|..++.+|. ..+|..++.+|-....+.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 4667899999999999999999998832 222 35789999999999998 999999999998876554
No 396
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=71.11 E-value=7.7 Score=25.52 Aligned_cols=29 Identities=28% Similarity=0.113 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIK 43 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~ 43 (253)
..+...|..-=..|+|++|+.+|..+++.
T Consensus 7 i~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 7 HFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 33444444444555555555555555543
No 397
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=70.96 E-value=70 Score=27.79 Aligned_cols=46 Identities=15% Similarity=-0.013 Sum_probs=33.8
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy11461 28 RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRK 73 (253)
Q Consensus 28 g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 73 (253)
+..-.|+..++.++..+|.+..+...+..+|..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3445677777777777888888777778888888888877777743
No 398
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=70.87 E-value=17 Score=23.59 Aligned_cols=30 Identities=30% Similarity=0.296 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIK 43 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~ 43 (253)
+..+...|...=..|+|++|+.+|..++..
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455666777777788888888888888764
No 399
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=70.71 E-value=27 Score=22.86 Aligned_cols=18 Identities=11% Similarity=0.016 Sum_probs=10.2
Q ss_pred HhCCHHHHHHHHHHHHhh
Q psy11461 94 EINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 94 ~~~~~~~A~~~~~~al~l 111 (253)
..|++++|+.+|..+++.
T Consensus 18 ~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 18 QRGDAAAALSLYCSALQY 35 (75)
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 345666666666655543
No 400
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=70.69 E-value=27 Score=30.18 Aligned_cols=86 Identities=16% Similarity=0.079 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy11461 29 QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL--EPSLVKAQFFLGQALHEINHYDEAVKHLQ 106 (253)
Q Consensus 29 ~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~ 106 (253)
+|..-..+|.......| +|..-.|+|.+..+..=...++...+....- -..+.-.+-..|..+..+|+.++|...|.
T Consensus 311 DW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 311 DWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred ChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 44444444555444444 3556677888877766666666666555443 12344566778999999999999999999
Q ss_pred HHHhhchhc
Q psy11461 107 RAYDLSREQ 115 (253)
Q Consensus 107 ~al~l~p~~ 115 (253)
+|+.+.++.
T Consensus 390 rAi~La~~~ 398 (415)
T COG4941 390 RAIALARNA 398 (415)
T ss_pred HHHHhcCCh
Confidence 999998774
No 401
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.58 E-value=21 Score=27.89 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy11461 31 EEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP 79 (253)
Q Consensus 31 ~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 79 (253)
...++...+.+...| ++..+.+++.++...|+.++|.....++..+.|
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344455566666666 578899999999999999999999999999999
No 402
>KOG4563|consensus
Probab=70.19 E-value=13 Score=32.25 Aligned_cols=60 Identities=13% Similarity=0.016 Sum_probs=48.1
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhhCHHHHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKN--------PVIPSYFTNRALCYLKLKQYVHCCDDC 71 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~ 71 (253)
.....+...|+.++.+++|+.|...|..|..+. -.+..+++..|.++++.+++...+-..
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345678889999999999999999999998773 235667888899999988877655443
No 403
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=70.17 E-value=28 Score=31.01 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH--------HH--H------HHHHHHHHH-hhC-----HHHHHHHHHH
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP--------SY--F------TNRALCYLK-LKQ-----YVHCCDDCRK 73 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~--------~~--~------~~~a~~~~~-~~~-----~~~A~~~~~~ 73 (253)
.....|..++..|+|.+|+..|+.+|..-|-.. .+ + +-+|...-. .+. .++..+.++-
T Consensus 206 ~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lEL 285 (422)
T PF06957_consen 206 ERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLEL 285 (422)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 445589999999999999999999987633211 11 1 112211111 111 1122222222
Q ss_pred HHh-----hCCCcHHHHHHHH-HHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 74 ALE-----LEPSLVKAQFFLG-QALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 74 al~-----l~p~~~~a~~~lg-~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
|.. |.|.+...-.+.| ...++.++|..|....++.|++.|..
T Consensus 286 AAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 286 AAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 221 1222222222222 23466789999999999999998864
No 404
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=69.17 E-value=26 Score=24.62 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=23.3
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhC
Q psy11461 53 NRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEIN 96 (253)
Q Consensus 53 ~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~ 96 (253)
..|..-+..|+|..|.+.+.++-+..+...-.+..-+.+...+|
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 34445555666666666666665554444444444455544444
No 405
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=68.15 E-value=11 Score=24.67 Aligned_cols=29 Identities=14% Similarity=0.032 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAII 42 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~ 42 (253)
+..+...|...=..|+|++|+.+|..++.
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445555555555666666666655554
No 406
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.12 E-value=56 Score=25.58 Aligned_cols=94 Identities=9% Similarity=0.000 Sum_probs=69.8
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC--Cc--HHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV-IP-SYFTNRALCYLKLKQYVHCCDDCRKALELEP--SL--VKAQF 86 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~-~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--~~--~~a~~ 86 (253)
.+-.-|..+..+-+.++.++|+..|+..-...-. .+ -+....|.+....|+...|+..|..+-.-.| .- --+..
T Consensus 57 ~sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 57 KSGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred cchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3444566777888899999999999987766443 33 3566678889999999999999998866443 22 23566
Q ss_pred HHHHHHHHhCCHHHHHHHHH
Q psy11461 87 FLGQALHEINHYDEAVKHLQ 106 (253)
Q Consensus 87 ~lg~~~~~~~~~~~A~~~~~ 106 (253)
+-+.++...|.|++-..-.+
T Consensus 137 raa~lLvD~gsy~dV~srve 156 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVE 156 (221)
T ss_pred HHHHHHhccccHHHHHHHhh
Confidence 77888999999988655443
No 407
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=68.12 E-value=34 Score=24.95 Aligned_cols=81 Identities=20% Similarity=0.027 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhhCCC---------------cHHHHHHHHHHHHHhCCHHHHHHHHHHH----Hhh
Q psy11461 51 FTNRALCYLKLKQYVHCCDDCRKALELEPS---------------LVKAQFFLGQALHEINHYDEAVKHLQRA----YDL 111 (253)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a----l~l 111 (253)
+.++|...++.+++-.++-.|++|+.+..+ .+-...++|.-+..+|+.+=.+++++-| +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567888889999999999999999876322 2335678899999999999888888655 445
Q ss_pred chhcccchHHHHHHHHHHHH
Q psy11461 112 SREQNLNYGDDIACQLRIAK 131 (253)
Q Consensus 112 ~p~~~~~~~~~~~~~~~~~~ 131 (253)
-|.-+..-.+.....+.-++
T Consensus 84 iPQCp~~~C~afi~sLGCCk 103 (140)
T PF10952_consen 84 IPQCPNTECEAFIDSLGCCK 103 (140)
T ss_pred ccCCCCcchHHHHHhhhccH
Confidence 55544444444444444443
No 408
>KOG0276|consensus
Probab=67.75 E-value=51 Score=30.86 Aligned_cols=80 Identities=13% Similarity=0.071 Sum_probs=39.6
Q ss_pred HhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC--------CCcHHHHHHHH-------
Q psy11461 25 FGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE--------PSLVKAQFFLG------- 89 (253)
Q Consensus 25 ~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--------p~~~~a~~~lg------- 89 (253)
.+.|+++.|.+...+ .++..=|..+|.+.+..+++..|.+++.++-.+. ..+...+..+|
T Consensus 648 l~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred hhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 344555555443332 2334455556666666666666666665554331 11222222222
Q ss_pred ------HHHHHhCCHHHHHHHHHHHH
Q psy11461 90 ------QALHEINHYDEAVKHLQRAY 109 (253)
Q Consensus 90 ------~~~~~~~~~~~A~~~~~~al 109 (253)
.|++..|+++++++.+...-
T Consensus 723 ~~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 723 KNNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred ccchHHHHHHHcCCHHHHHHHHHhcC
Confidence 35666677777776665443
No 409
>KOG3783|consensus
Probab=66.88 E-value=48 Score=30.37 Aligned_cols=73 Identities=16% Similarity=-0.044 Sum_probs=55.3
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV----IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ 85 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 85 (253)
.|..+.-+...+..+...|+-+.|+..+..++. +. .+..++.+|.++.-+.+|..|..++.....+.. ...++
T Consensus 263 ~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd-WS~a~ 339 (546)
T KOG3783|consen 263 YPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESD-WSHAF 339 (546)
T ss_pred CCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh-hhHHH
Confidence 355566677788888888888888888888876 22 345788899999999999999999988877653 34443
No 410
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=65.61 E-value=11 Score=18.97 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=8.4
Q ss_pred HHHHHHHhhCHHHHHHHHHH
Q psy11461 54 RALCYLKLKQYVHCCDDCRK 73 (253)
Q Consensus 54 ~a~~~~~~~~~~~A~~~~~~ 73 (253)
+-.+|.+.|++++|...+++
T Consensus 6 li~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHHHccchHHHHHHHHHH
Confidence 33344444444444444433
No 411
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=64.32 E-value=21 Score=32.29 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHC 67 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A 67 (253)
.....+|...+.+|+|.-+.+...+++-.+|.+..+....|.|+-++|--.++
T Consensus 453 drVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~ 505 (655)
T COG2015 453 DRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAES 505 (655)
T ss_pred HHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhcc
Confidence 34567888889999999999999999999999999988889888888754443
No 412
>KOG2417|consensus
Probab=64.31 E-value=75 Score=27.62 Aligned_cols=10 Identities=70% Similarity=1.009 Sum_probs=9.0
Q ss_pred cCCCCCCCCC
Q psy11461 214 VGHFDPVTRV 223 (253)
Q Consensus 214 ~g~~DP~tr~ 223 (253)
+|+.||+||-
T Consensus 320 vGk~DPVTr~ 329 (462)
T KOG2417|consen 320 VGKVDPVTRG 329 (462)
T ss_pred ccCcCCccce
Confidence 9999999993
No 413
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=64.19 E-value=18 Score=26.18 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=19.3
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q psy11461 19 DEGNRYFGLRQYEEAINCYTRAIIKNPVI 47 (253)
Q Consensus 19 ~~g~~~~~~g~~~~A~~~y~~ai~~~p~~ 47 (253)
.+|..+...|++.+|..+|-+|+...|.-
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 46777777777777777777777776653
No 414
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=64.04 E-value=1.5e+02 Score=29.07 Aligned_cols=102 Identities=20% Similarity=0.113 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc---
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV---------IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL--- 81 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--- 81 (253)
+......+....-..+|.+|..+..++-..-|. .+..-..+|.+....+++++|++.++.++..-|.+
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 444555677778889999999998887665333 23456667888899999999999999999887764
Q ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 82 --VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 82 --~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
..++..+|.+..-.|++++|..+...+.++....
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 4567888999999999999999999999886654
No 415
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=63.86 E-value=45 Score=30.14 Aligned_cols=69 Identities=9% Similarity=-0.042 Sum_probs=41.1
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (253)
.++|.+...|+.+-..+-.+|.+++-.+.|.+...-.|--+.+|...-.--+..++|......+.+++.
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 355666666666666666666666666666666666665555555443333344556666666665554
No 416
>KOG0890|consensus
Probab=62.95 E-value=1.5e+02 Score=32.50 Aligned_cols=105 Identities=14% Similarity=0.090 Sum_probs=81.2
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC-CC-------
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE-PS------- 80 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~------- 80 (253)
-....+..|.+.|......|+++-|-...-.|.+.. -+.++..+|..+.+.|+-..|+..+++.+.++ |+
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~ 1742 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTD 1742 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccc
Confidence 356678899999999999999999999999998876 56789999999999999999999999999764 22
Q ss_pred ---c------HHHHHHHHHHHHHhCCH--HHHHHHHHHHHhhchhc
Q psy11461 81 ---L------VKAQFFLGQALHEINHY--DEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 81 ---~------~~a~~~lg~~~~~~~~~--~~A~~~~~~al~l~p~~ 115 (253)
. .++.+..+.-.-..+++ .+-++.|..+.++.|..
T Consensus 1743 ~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1743 TPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEW 1788 (2382)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccc
Confidence 1 12333444444444543 34577888899998843
No 417
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=62.51 E-value=72 Score=26.78 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh----------------------CHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 32 EAINCYTRAIIKNPVIPSYFTNRALCYLKLK----------------------QYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 32 ~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~----------------------~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
.-...++.-++..|++..++..+|.++.... -.+.|..++.+|+.++|...-++..+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 4566777788889999998888888877622 234566666777777777766666655
Q ss_pred HHHHHhCC
Q psy11461 90 QALHEINH 97 (253)
Q Consensus 90 ~~~~~~~~ 97 (253)
.+-...|.
T Consensus 141 ~~s~~fge 148 (277)
T PF13226_consen 141 NISAYFGE 148 (277)
T ss_pred HHHhhcCC
Confidence 55555554
No 418
>PRK11619 lytic murein transglycosylase; Provisional
Probab=61.67 E-value=75 Score=30.20 Aligned_cols=57 Identities=12% Similarity=-0.041 Sum_probs=42.8
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy11461 54 RALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYD 110 (253)
Q Consensus 54 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 110 (253)
+...-+..++|+.+..++...-.-........|.+|.++..+|+.++|...|.++..
T Consensus 318 r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 318 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 344445777888777777664333345678899999999999999999999999754
No 419
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=61.00 E-value=44 Score=21.87 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIK 43 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~ 43 (253)
+..+...|...=..|+|.+|..+|..+|..
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455666666777777777777777777764
No 420
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=60.79 E-value=68 Score=23.94 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=43.2
Q ss_pred HHHHHHHH-HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461 16 ELKDEGNR-YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77 (253)
Q Consensus 16 ~~~~~g~~-~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (253)
.|..+|.. +..+|+-++-.+.+.........+|.++..+|.+|.+.|+..++...+.+|-+-
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 45556654 456777777777888877666678899999999999999999999999888763
No 421
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=60.66 E-value=23 Score=27.76 Aligned_cols=47 Identities=9% Similarity=0.142 Sum_probs=24.8
Q ss_pred HHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHH
Q psy11461 56 LCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVK 103 (253)
Q Consensus 56 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~ 103 (253)
.++.+.|.|++|.+.+++... +|++.+....|..+-.....+..-++
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lq 165 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQ 165 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHH
Confidence 345556666666666666665 55555554444444444444444333
No 422
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=60.64 E-value=56 Score=22.92 Aligned_cols=27 Identities=26% Similarity=0.209 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461 86 FFLGQALHEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 86 ~~lg~~~~~~~~~~~A~~~~~~al~l~ 112 (253)
...|......|++..|.+.+.++-+..
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~ 89 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLS 89 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 344556666677777777777775553
No 423
>PF13041 PPR_2: PPR repeat family
Probab=60.27 E-value=32 Score=19.97 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=12.7
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHH
Q psy11461 17 LKDEGNRYFGLRQYEEAINCYTRAII 42 (253)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~y~~ai~ 42 (253)
|..+-..+.+.|++++|.+.|++..+
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 33444444555555555555555443
No 424
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=59.03 E-value=1e+02 Score=25.48 Aligned_cols=95 Identities=14% Similarity=0.015 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhCHH-HHHHHHHHHHhhC------CC
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIK-----NPVIPSYFTNRALCYLKLKQYV-HCCDDCRKALELE------PS 80 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-----~p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~l~------p~ 80 (253)
....++.=+..+++.|++..|.+.-.-.++. .+.+.....+++.++.....-+ +-.+..++|++.. -.
T Consensus 9 AidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~G 88 (260)
T PF04190_consen 9 AIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFG 88 (260)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT-
T ss_pred HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCC
Confidence 3455666777888888888887776555544 3445555567777776654322 2333444444432 23
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy11461 81 LVKAQFFLGQALHEINHYDEAVKHLQR 107 (253)
Q Consensus 81 ~~~a~~~lg~~~~~~~~~~~A~~~~~~ 107 (253)
++..+..+|..+++.|++.+|..+|-.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 678899999999999999999887754
No 425
>KOG3616|consensus
Probab=59.01 E-value=29 Score=33.28 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=51.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHh
Q psy11461 17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL-VKAQFFLGQALHEI 95 (253)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-~~a~~~lg~~~~~~ 95 (253)
|-..+..|...|+|+-|.+.|.++-. +..--..|.+.|+|..|.+...+... |.. +..|...+.-+-..
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldeh 837 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEH 837 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhh
Confidence 34456667778888888888877532 22334556778888888877776654 332 34455556667777
Q ss_pred CCHHHHHHHH
Q psy11461 96 NHYDEAVKHL 105 (253)
Q Consensus 96 ~~~~~A~~~~ 105 (253)
|+|.+|.+.|
T Consensus 838 gkf~eaeqly 847 (1636)
T KOG3616|consen 838 GKFAEAEQLY 847 (1636)
T ss_pred cchhhhhhee
Confidence 8777776554
No 426
>KOG2114|consensus
Probab=58.84 E-value=1.9e+02 Score=28.38 Aligned_cols=88 Identities=10% Similarity=0.072 Sum_probs=50.5
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK-NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
...+..+...|+.++.+|+|++|...|-++|.. +|...--.+ +...+..+-..+++..++-.-.+..--..|-
T Consensus 365 d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf------Ldaq~IknLt~YLe~L~~~gla~~dhttlLL 438 (933)
T KOG2114|consen 365 DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF------LDAQRIKNLTSYLEALHKKGLANSDHTTLLL 438 (933)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh------cCHHHHHHHHHHHHHHHHcccccchhHHHHH
Confidence 345667788999999999999999999998865 332211111 2222333333344444433223333334456
Q ss_pred HHHHHhCCHHHHHHH
Q psy11461 90 QALHEINHYDEAVKH 104 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~ 104 (253)
.||.++++.+.-.+.
T Consensus 439 ncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 439 NCYIKLKDVEKLTEF 453 (933)
T ss_pred HHHHHhcchHHHHHH
Confidence 778888876554433
No 427
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=58.49 E-value=25 Score=18.25 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=12.5
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461 69 DDCRKALELEPSLVKAQFFLGQAL 92 (253)
Q Consensus 69 ~~~~~al~l~p~~~~a~~~lg~~~ 92 (253)
.....++..+|.|..+|..+-.++
T Consensus 4 ~~~~~~l~~~pknys~W~yR~~ll 27 (31)
T PF01239_consen 4 EFTKKALEKDPKNYSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCcccccHHHHHHHHH
Confidence 444555555555555555544443
No 428
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=58.33 E-value=95 Score=29.02 Aligned_cols=77 Identities=8% Similarity=0.078 Sum_probs=39.8
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy11461 28 RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQ 106 (253)
Q Consensus 28 g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~ 106 (253)
...+.+......-+.....++......|..+-..+..+.|-.+|++.+..+|+ .+++..+..+...|-...|...+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 22 KKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 33344433333333223334444555566666666666666666666666665 445555555555555555544444
No 429
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=58.09 E-value=24 Score=18.04 Aligned_cols=22 Identities=5% Similarity=-0.150 Sum_probs=10.4
Q ss_pred HHHHHHHHhhCHHHHHHHHHHH
Q psy11461 53 NRALCYLKLKQYVHCCDDCRKA 74 (253)
Q Consensus 53 ~~a~~~~~~~~~~~A~~~~~~a 74 (253)
.+-.+|.+.|++++|...+.+.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3334444455555555554443
No 430
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=58.07 E-value=21 Score=23.72 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=7.9
Q ss_pred hhCHHHHHHHHHHHHh
Q psy11461 61 LKQYVHCCDDCRKALE 76 (253)
Q Consensus 61 ~~~~~~A~~~~~~al~ 76 (253)
.|+.+.|+.+|++++.
T Consensus 21 ~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 21 WGDKEQALAHYRKGLR 36 (79)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3445555555555443
No 431
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=56.51 E-value=74 Score=23.04 Aligned_cols=49 Identities=18% Similarity=0.060 Sum_probs=37.8
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy11461 23 RYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72 (253)
Q Consensus 23 ~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 72 (253)
.+...+.....+.++..++..++.++..+..+..+|.+. +..+.+..+.
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 344567899999999999999888888888888888765 3445555554
No 432
>KOG3389|consensus
Probab=56.02 E-value=8.9 Score=28.40 Aligned_cols=19 Identities=37% Similarity=0.851 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhhcCcccC
Q psy11461 234 FAMKEVVDNFLQENDWAYE 252 (253)
Q Consensus 234 ~~lk~a~~~~l~~n~wa~~ 252 (253)
.+-|+..--|-++|||-||
T Consensus 131 F~tkEdA~sFaEkngW~yd 149 (178)
T KOG3389|consen 131 FDTKEDAKSFAEKNGWDYD 149 (178)
T ss_pred eccHHHHHHHHHHcCCccc
Confidence 4668999999999999997
No 433
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=55.76 E-value=1.5e+02 Score=26.37 Aligned_cols=98 Identities=20% Similarity=0.138 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhC--------------HHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI------PSYFTNRALCYLKLKQ--------------YVHCCDDCRK 73 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~------~~~~~~~a~~~~~~~~--------------~~~A~~~~~~ 73 (253)
......+|..+|-.|+|+.|...|..+..-...+ +.+.-..|.|.+..+. ++.|...|.+
T Consensus 208 E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 208 EAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 3467789999999999999999999988764322 2234445556655552 2233333433
Q ss_pred H----HhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 74 A----LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 74 a----l~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
+ .....-..++....+.++...+.+.+|...+-++...
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 2 1111123455666677777788887777766666654
No 434
>KOG2581|consensus
Probab=54.63 E-value=52 Score=29.20 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=47.1
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIK----NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 80 (253)
..+.....+-..|...+.|+.|.....+..-- +...+.+++-+|.+..-+.+|..|.+++-.|+...|.
T Consensus 207 ~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 207 GQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 34445555666777778888887777665411 1123456666777777788888888888888888776
No 435
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=54.62 E-value=33 Score=18.40 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHh
Q psy11461 98 YDEAVKHLQRAYD 110 (253)
Q Consensus 98 ~~~A~~~~~~al~ 110 (253)
+++|+..|++|-+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4556666666544
No 436
>KOG3807|consensus
Probab=54.04 E-value=1.5e+02 Score=25.82 Aligned_cols=53 Identities=15% Similarity=0.121 Sum_probs=31.8
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhhCHHHHHHHH
Q psy11461 19 DEGNRYFGLRQYEEAINCYTRAIIKNPVIP--SYFTNRALCYLKLKQYVHCCDDC 71 (253)
Q Consensus 19 ~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~ 71 (253)
.++.+..+.|+..+|++.++...+..|-.. ....|+-.+++.+.-|.++...+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777777766666322 24555666666655555544443
No 437
>KOG2561|consensus
Probab=53.89 E-value=1.1e+02 Score=27.60 Aligned_cols=98 Identities=17% Similarity=0.208 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh----CC-------CCHHHHHHHHHHHHHhhC----------HHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIK----NP-------VIPSYFTNRALCYLKLKQ----------YVHCCDDCR 72 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~----~p-------~~~~~~~~~a~~~~~~~~----------~~~A~~~~~ 72 (253)
+..++..|..++....|.+|+.++-.|=+. +| +.+..-...-.||+.+.+ ...|.+.|.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 345777889999999999999887666433 22 122223334567776654 223333333
Q ss_pred HHH--------hhC-CCcH------HHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 73 KAL--------ELE-PSLV------KAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 73 ~al--------~l~-p~~~------~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
++. .+. +..+ +.+..-|.+.+.+|+-++|.++++.|...
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 322 111 2222 22344599999999999999999988764
No 438
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=53.68 E-value=48 Score=24.02 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 86 FFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 86 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
..+|..+...|++++|...|-+|+..+|.-
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 447999999999999999999999999874
No 439
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=53.58 E-value=30 Score=17.73 Aligned_cols=24 Identities=4% Similarity=-0.153 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461 51 FTNRALCYLKLKQYVHCCDDCRKA 74 (253)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~a 74 (253)
|..+-.++.+.|+++.|...++.-
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 444455555555555555555443
No 440
>PF05205 COMPASS-Shg1: COMPASS (Complex proteins associated with Set1p) component shg1
Probab=51.71 E-value=4 Score=28.85 Aligned_cols=42 Identities=29% Similarity=0.558 Sum_probs=28.6
Q ss_pred hhchhcCCCCCCCCCCC---CCCCCcCcH--HHHHHHHHHhhhcCcc
Q psy11461 209 ERRRKVGHFDPVTRVKL---SADQLIPNF--AMKEVVDNFLQENDWA 250 (253)
Q Consensus 209 ~~~~~~g~~DP~tr~~l---~~~~l~pN~--~lk~a~~~~l~~n~wa 250 (253)
...++.|+||-+-|+-+ ..+..+.|+ .+.+.|+.+|+++||-
T Consensus 5 ~~fKk~G~FD~lRk~~l~~~~~~~~~~~l~~~v~~~v~~~l~~~~~l 51 (106)
T PF05205_consen 5 EEFKKQGHFDKLRKECLADFDTSPAYQNLRQRVEEIVESELERDPWL 51 (106)
T ss_pred HHHHhCCChHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhcCccc
Confidence 34566788888877433 344444554 4678899999999984
No 441
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=51.53 E-value=2.5e+02 Score=27.67 Aligned_cols=99 Identities=10% Similarity=-0.051 Sum_probs=72.0
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC----Cc
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI-----PSYFTNRALCYLKLKQYVHCCDDCRKALELEP----SL 81 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p----~~ 81 (253)
...+...--.|......|+++.|++..+.++..-|.+ ..++...|.+..-.|++++|......+.++.. -.
T Consensus 455 ~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~ 534 (894)
T COG2909 455 DLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYH 534 (894)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHH
Confidence 3445555567888899999999999999999987754 45788899999999999999999998887732 22
Q ss_pred H--HHHHHHHHHHHHhC--CHHHHHHHHHHHH
Q psy11461 82 V--KAQFFLGQALHEIN--HYDEAVKHLQRAY 109 (253)
Q Consensus 82 ~--~a~~~lg~~~~~~~--~~~~A~~~~~~al 109 (253)
. -+.+..+.++..+| .+.+.+..|...-
T Consensus 535 l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~ 566 (894)
T COG2909 535 LALWSLLQQSEILEAQGQVARAEQEKAFNLIR 566 (894)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2 23444577788888 3444444444433
No 442
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=50.88 E-value=1.8e+02 Score=25.73 Aligned_cols=65 Identities=9% Similarity=-0.033 Sum_probs=45.1
Q ss_pred CCcccHHHHHH--HHHHHHhccCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHH--hhCHHHHHHHHHH
Q psy11461 9 TNNLSDKELKD--EGNRYFGLRQYEEAINCYTRAIIKNPV-----IPSYFTNRALCYLK--LKQYVHCCDDCRK 73 (253)
Q Consensus 9 ~~~~~a~~~~~--~g~~~~~~g~~~~A~~~y~~ai~~~p~-----~~~~~~~~a~~~~~--~~~~~~A~~~~~~ 73 (253)
.+|........ .+..+|+.++|..|...|..+....++ ....+..++.+|.. .-++.+|.+.+++
T Consensus 123 ~nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 123 SDPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34444444444 566899999999999999999987542 23455566666554 5578888888873
No 443
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=50.62 E-value=1.5e+02 Score=27.64 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=41.1
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh-----CCCcHHHHHHHHHHHHHhCCHHHHH
Q psy11461 28 RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL-----EPSLVKAQFFLGQALHEINHYDEAV 102 (253)
Q Consensus 28 g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-----~p~~~~a~~~lg~~~~~~~~~~~A~ 102 (253)
.+|.-|+-.+-..-++.|... -..++..|.+||.. +..++..|..+|-.++..++|.+|+
T Consensus 274 ~~YPmALg~LadLeEi~pt~~---------------r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~ 338 (618)
T PF05053_consen 274 ARYPMALGNLADLEEIDPTPG---------------RPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREAL 338 (618)
T ss_dssp TT-HHHHHHHHHHHHHS--TT---------------S--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHH
T ss_pred hhCchhhhhhHhHHhhccCCC---------------CCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHH
Confidence 355666666666666655421 23334445555443 2446678888999999999999999
Q ss_pred HHHHHHHhh
Q psy11461 103 KHLQRAYDL 111 (253)
Q Consensus 103 ~~~~~al~l 111 (253)
..+..|-..
T Consensus 339 ~~Wa~aa~V 347 (618)
T PF05053_consen 339 RSWAEAADV 347 (618)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887654
No 444
>KOG4056|consensus
Probab=50.04 E-value=44 Score=24.73 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=25.8
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHH
Q psy11461 19 DEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYF 51 (253)
Q Consensus 19 ~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~ 51 (253)
.+|..++.+|+++++..++..||.+.|....++
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL 118 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANAIVVCGQPAQLL 118 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHH
Confidence 478888888888888888888888877655443
No 445
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=49.82 E-value=2e+02 Score=26.00 Aligned_cols=33 Identities=18% Similarity=0.054 Sum_probs=28.1
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 79 PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 79 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
.++..-|..||......|+++-|..+|.++-..
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 347789999999999999999999999987544
No 446
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=49.51 E-value=38 Score=17.66 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=12.5
Q ss_pred HHHHHHHHHhc----cCHHHHHHHHHHHHH
Q psy11461 17 LKDEGNRYFGL----RQYEEAINCYTRAII 42 (253)
Q Consensus 17 ~~~~g~~~~~~----g~~~~A~~~y~~ai~ 42 (253)
.+.+|..++.- .+...|+.+|+++..
T Consensus 4 ~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 4 QYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 44455554431 255555555555543
No 447
>KOG4014|consensus
Probab=48.87 E-value=1.3e+02 Score=23.77 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=64.9
Q ss_pred ccHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----hhCHHHHHHHHHHHHhhCCCcHHHH
Q psy11461 12 LSDKELKDEGNRYFG-LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK-----LKQYVHCCDDCRKALELEPSLVKAQ 85 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~-~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~al~l~p~~~~a~ 85 (253)
..+..-..+|..+-. +.+|+.|...|+.--..+ ..+...+.+|.-++. .++...|++.+..+-. -+.+.+.
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC 108 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQAC 108 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHH
Confidence 445555556655543 566777777776554433 234444445544432 3468889999988876 5678899
Q ss_pred HHHHHHHHHhC-------CHHHHHHHHHHHHhhch
Q psy11461 86 FFLGQALHEIN-------HYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 86 ~~lg~~~~~~~-------~~~~A~~~~~~al~l~p 113 (253)
.++|.++..-. +.+.|.+++.++-.+.-
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~ 143 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDLED 143 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCC
Confidence 99998887643 36789999999887753
No 448
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=48.64 E-value=1.5e+02 Score=24.42 Aligned_cols=65 Identities=11% Similarity=-0.080 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHH----------------HhhCCCcHHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Q psy11461 47 IPSYFTNRALCYLKLKQYVHCCDDCRKA----------------LELEPSLVKAQFFLGQA-LHEINHYDEAVKHLQRAY 109 (253)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a----------------l~l~p~~~~a~~~lg~~-~~~~~~~~~A~~~~~~al 109 (253)
++.++..+|..|.+-+++.+|..++-.. ..-.|.....+..+|.. |..+++...|...+..-.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFT 168 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6678888888888888888887776211 12234555555555555 677899999988777666
Q ss_pred hh
Q psy11461 110 DL 111 (253)
Q Consensus 110 ~l 111 (253)
+.
T Consensus 169 ~~ 170 (260)
T PF04190_consen 169 SK 170 (260)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 449
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=48.64 E-value=91 Score=22.99 Aligned_cols=34 Identities=12% Similarity=0.026 Sum_probs=14.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy11461 20 EGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTN 53 (253)
Q Consensus 20 ~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~ 53 (253)
+-..++.+-+.+.|...|...+..+|++..++..
T Consensus 82 fq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla 115 (139)
T PF12583_consen 82 FQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLA 115 (139)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHH
Confidence 3333444444555555555555555554444433
No 450
>KOG2041|consensus
Probab=48.40 E-value=71 Score=30.60 Aligned_cols=26 Identities=8% Similarity=0.142 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461 49 SYFTNRALCYLKLKQYVHCCDDCRKA 74 (253)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (253)
.++.+.|..+..+..|.+|.+.|...
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35555566666666666665555444
No 451
>KOG4151|consensus
Probab=48.25 E-value=78 Score=30.36 Aligned_cols=78 Identities=23% Similarity=0.268 Sum_probs=65.3
Q ss_pred CCcccHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFG--LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~--~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 86 (253)
.+...+....+.+-++.. .|+|..++.--.-++...|....+...++.||...++++-|+++..-....+|.++.+--
T Consensus 86 ~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 86 DHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred cchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 345556666667766654 689999999999999999999999999999999999999999998888899999865544
No 452
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=47.44 E-value=81 Score=27.69 Aligned_cols=63 Identities=22% Similarity=0.315 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHhh-CCC--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 52 TNRALCYLKLKQYVHCCDDCRKALEL-EPS--------LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 52 ~~~a~~~~~~~~~~~A~~~~~~al~l-~p~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
..+-..|+++++++-+...++..... -|+ -+..+|.+|.++..+.++.+|...+..|+..+|.
T Consensus 181 NlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 181 NLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 34577888999988776655433221 122 2345899999999999999999999999999988
No 453
>KOG2758|consensus
Probab=47.36 E-value=93 Score=26.84 Aligned_cols=64 Identities=8% Similarity=-0.054 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK----NPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (253)
|+....++..+...+..|+|..|-.++-....+ ++++..+....-..-.-+.+|+.|.+++.+.
T Consensus 126 ~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rL 193 (432)
T KOG2758|consen 126 PERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRL 193 (432)
T ss_pred HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
No 454
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=46.81 E-value=99 Score=21.68 Aligned_cols=15 Identities=33% Similarity=0.895 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhhcCc
Q psy11461 235 AMKEVVDNFLQENDW 249 (253)
Q Consensus 235 ~lk~a~~~~l~~n~w 249 (253)
+.=.+.++|..+|||
T Consensus 70 ~a~~~tD~yV~e~PW 84 (104)
T COG4575 70 AAADATDDYVRENPW 84 (104)
T ss_pred HHHHHHHHHHHcCCc
Confidence 344568899999999
No 455
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=45.48 E-value=1.6e+02 Score=27.57 Aligned_cols=64 Identities=13% Similarity=0.009 Sum_probs=53.1
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 72 (253)
.+.....+..++..+..+-.-+..+.|-.+|...+..+|+ ..+...|.-+.+.|-...|...+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 35 LPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred CCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 3456677888888999999999999999999999999999 466777788888887777777666
No 456
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=45.15 E-value=44 Score=22.17 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 63 QYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 63 ~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
.|+.|.....+||..+. .|+.++|+.+|+++++.
T Consensus 4 ~~~~A~~~I~kaL~~dE---------------~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 4 YYKQAFEEISKALRADE---------------WGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHHHHHhhhhh---------------cCCHHHHHHHHHHHHHH
Confidence 46667777777766553 36667777777776665
No 457
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=45.13 E-value=2.1e+02 Score=24.86 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=42.0
Q ss_pred hhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy11461 61 LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQR 107 (253)
Q Consensus 61 ~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 107 (253)
....-+|+..++.++..+|.|......+..+|..+|-...|...|..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 44567889999999999999999999999999999999999988754
No 458
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=44.64 E-value=1.3e+02 Score=28.03 Aligned_cols=64 Identities=14% Similarity=0.036 Sum_probs=42.3
Q ss_pred ccHHHHHHHHHHH--HhccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy11461 12 LSDKELKDEGNRY--FGLRQYEEAINCYTRAIIK-----NPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75 (253)
Q Consensus 12 ~~a~~~~~~g~~~--~~~g~~~~A~~~y~~ai~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 75 (253)
..+.++.++|..- .....-..++..|.+||.. +.....-|..+|.+|++.++|.+|+..+..|-
T Consensus 275 ~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 4456666666644 3344456788999999876 34456678889999999999999998877663
No 459
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=44.43 E-value=59 Score=24.49 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=21.6
Q ss_pred HHHHHHHhcc-CHHHHHHHHHHHHHhCCCCH
Q psy11461 19 DEGNRYFGLR-QYEEAINCYTRAIIKNPVIP 48 (253)
Q Consensus 19 ~~g~~~~~~g-~~~~A~~~y~~ai~~~p~~~ 48 (253)
.+|..+...| ++.+|..+|-+||...|.-.
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~ 125 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQPQ 125 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCCHH
Confidence 3677777777 77777777777777776533
No 460
>KOG0276|consensus
Probab=44.33 E-value=77 Score=29.75 Aligned_cols=53 Identities=25% Similarity=0.066 Sum_probs=42.1
Q ss_pred HHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461 55 ALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 55 a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 112 (253)
-.+.+++|+++.|.+...++ ++..=|..||.+....+++.-|.++|.++..+.
T Consensus 644 Felal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~ 696 (794)
T KOG0276|consen 644 FELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLG 696 (794)
T ss_pred hhhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchh
Confidence 34456788888877665443 566779999999999999999999999987664
No 461
>KOG0128|consensus
Probab=43.94 E-value=1.4e+02 Score=29.15 Aligned_cols=93 Identities=10% Similarity=-0.050 Sum_probs=58.8
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH---
Q psy11461 18 KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE--- 94 (253)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~--- 94 (253)
...+..--..|.-++-|..+..-+.+++.+...+..+-..+.+.|++++....-..+..+.|.++..|.....-...
T Consensus 83 ~ds~sD~s~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~ 162 (881)
T KOG0128|consen 83 MDSDSDSSNEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQ 162 (881)
T ss_pred ccccCCccccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc
Confidence 33444444555566666677777777777777777777777777777777776667777777776666554433322
Q ss_pred hCCHHHHHHHHHHHHh
Q psy11461 95 INHYDEAVKHLQRAYD 110 (253)
Q Consensus 95 ~~~~~~A~~~~~~al~ 110 (253)
.+.-.++...|.+++.
T Consensus 163 s~~~~~v~~~~ekal~ 178 (881)
T KOG0128|consen 163 SEERKEVEELFEKALG 178 (881)
T ss_pred CcchhHHHHHHHHHhc
Confidence 2455666666666653
No 462
>KOG4563|consensus
Probab=43.89 E-value=55 Score=28.53 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhhCC--------CcHHHHHHHHHHHHHhCCHHHHHHHH
Q psy11461 51 FTNRALCYLKLKQYVHCCDDCRKALELEP--------SLVKAQFFLGQALHEINHYDEAVKHL 105 (253)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p--------~~~~a~~~lg~~~~~~~~~~~A~~~~ 105 (253)
....|.-.+.++++++|...+..|..+.. ++..++|.+|.+++.++++..++-..
T Consensus 44 lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 44 LVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44567778889999999999999987743 35678999999999999887765443
No 463
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=43.75 E-value=58 Score=28.76 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHhhc
Q psy11461 64 YVHCCDDCRKALELEPSLVKAQFFLGQALHEINH------------YDEAVKHLQRAYDLS 112 (253)
Q Consensus 64 ~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~------------~~~A~~~~~~al~l~ 112 (253)
...|+.++++|.. .+.+..|..+|.++..+|+ |.+|...+.+|-...
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at 392 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKAT 392 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhcc
Confidence 4556666666654 4455666666666666653 577788888776543
No 464
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=43.40 E-value=41 Score=29.61 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHh
Q psy11461 98 YDEAVKHLQRAYD 110 (253)
Q Consensus 98 ~~~A~~~~~~al~ 110 (253)
...|++++++|..
T Consensus 334 ~~~Al~yL~kA~d 346 (404)
T PF12753_consen 334 IKKALEYLKKAQD 346 (404)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 5677777777765
No 465
>KOG1464|consensus
Probab=42.80 E-value=89 Score=26.34 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHhhCHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 59 LKLKQYVHCCDDCRKALELEPS----LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 59 ~~~~~~~~A~~~~~~al~l~p~----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
++....++|+..|.+++++.+. -.+|+-..-.+++.+++|++-...|++.+..
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
No 466
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=41.08 E-value=1e+02 Score=20.20 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=8.8
Q ss_pred HhCCHHHHHHHHHHHHh
Q psy11461 94 EINHYDEAVKHLQRAYD 110 (253)
Q Consensus 94 ~~~~~~~A~~~~~~al~ 110 (253)
..|+|++|+.+|..+++
T Consensus 18 ~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 18 QEGRFQEALVCYQEGID 34 (77)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 34555555555555543
No 467
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=41.03 E-value=91 Score=19.61 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=11.9
Q ss_pred HHhCCHHHHHHHHHHHHhh
Q psy11461 93 HEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 93 ~~~~~~~~A~~~~~~al~l 111 (253)
=..|++++|+.+|..++..
T Consensus 16 D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 16 DEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHTTSHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 3456777777666666654
No 468
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=39.86 E-value=88 Score=24.63 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=24.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461 88 LGQALHEINHYDEAVKHLQRAYDLSREQNLN 118 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 118 (253)
...++.+.|.+++|.+.+++... +|++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 34568899999999999999998 7776433
No 469
>PF15469 Sec5: Exocyst complex component Sec5
Probab=38.88 E-value=1.8e+02 Score=22.36 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHHhhchhc
Q psy11461 97 HYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 97 ~~~~A~~~~~~al~l~p~~ 115 (253)
..++...++...+++++..
T Consensus 154 s~~~~~~~i~~Ll~L~~~~ 172 (182)
T PF15469_consen 154 SQEEFLKLIRKLLELNVEE 172 (182)
T ss_pred CHHHHHHHHHHHHhCCCCC
Confidence 4556666666666666643
No 470
>KOG0292|consensus
Probab=38.73 E-value=4.1e+02 Score=26.50 Aligned_cols=101 Identities=14% Similarity=0.138 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-------CH---HHHHHHHHHHHH----------h--hCHHHH--HHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPV-------IP---SYFTNRALCYLK----------L--KQYVHC--CDD 70 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~-------~~---~~~~~~a~~~~~----------~--~~~~~A--~~~ 70 (253)
..-.+.|..+...|+|.+|+++|..+|-.-|- .. .-....+.-|.- + .....+ +..
T Consensus 992 ~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAa 1071 (1202)
T KOG0292|consen 992 NKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAA 1071 (1202)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHH
Confidence 34556788889999999999999999876442 11 111111211111 1 112222 111
Q ss_pred HHHHHhhCCCcH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 71 CRKALELEPSLV-KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 71 ~~~al~l~p~~~-~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
|=.-..+.|.+. -++..--.+.++++++..|-...++.+++.|..
T Consensus 1072 YFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~ 1117 (1202)
T KOG0292|consen 1072 YFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSP 1117 (1202)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Confidence 212223444432 344444556788999999999999999999875
No 471
>KOG3677|consensus
Probab=38.54 E-value=55 Score=29.16 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=52.7
Q ss_pred CCCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHhhCCCcH
Q psy11461 4 SHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK-QYVHCCDDCRKALELEPSLV 82 (253)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~ 82 (253)
+.+.++.|..--. +..|-.|...|+|.+|++.|..++..-...-..+...+.+|-..+ +++.--..+..++.+.|...
T Consensus 263 k~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~~d~inKq~eqm~~llai~l~~yPq~i 341 (525)
T KOG3677|consen 263 KEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQYDMINKQNEQMHHLLAICLSMYPQMI 341 (525)
T ss_pred hhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHhhhhhhHHHHHHHHHHHHHhCchhh
Confidence 3444455444333 778999999999999999998887653222333444455554433 35555566666777777532
Q ss_pred --HHHHHHHHH
Q psy11461 83 --KAQFFLGQA 91 (253)
Q Consensus 83 --~a~~~lg~~ 91 (253)
..+..++.+
T Consensus 342 DESi~s~l~Ek 352 (525)
T KOG3677|consen 342 DESIHSQLAEK 352 (525)
T ss_pred hHHHHHHHHHH
Confidence 334444443
No 472
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=38.28 E-value=2.5e+02 Score=24.03 Aligned_cols=80 Identities=9% Similarity=-0.050 Sum_probs=58.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHH
Q psy11461 20 EGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYD 99 (253)
Q Consensus 20 ~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~ 99 (253)
--..+...|+...|...-.+ ..+ .+-.+|...-.++...++|++-...... ..+|-.|.....++...|+..
T Consensus 183 Ti~~li~~~~~k~A~kl~k~-Fkv--~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKE-FKV--PDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHH-cCC--cHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHH
Confidence 33445677887777666333 233 4567888889999999999987765432 345677888888888999999
Q ss_pred HHHHHHHH
Q psy11461 100 EAVKHLQR 107 (253)
Q Consensus 100 ~A~~~~~~ 107 (253)
+|..+..+
T Consensus 255 eA~~yI~k 262 (319)
T PF04840_consen 255 EASKYIPK 262 (319)
T ss_pred HHHHHHHh
Confidence 99998888
No 473
>smart00250 PLEC Plectin repeat.
Probab=38.14 E-value=14 Score=20.56 Aligned_cols=14 Identities=50% Similarity=0.525 Sum_probs=11.8
Q ss_pred cCCCCCCCCCCCCC
Q psy11461 214 VGHFDPVTRVKLSA 227 (253)
Q Consensus 214 ~g~~DP~tr~~l~~ 227 (253)
.|.+||.|.+.++.
T Consensus 11 ~Giidp~t~~~lsv 24 (38)
T smart00250 11 GGIIDPETGQKLSV 24 (38)
T ss_pred eEEEcCCCCCCcCH
Confidence 57899999998874
No 474
>KOG3616|consensus
Probab=37.76 E-value=4e+02 Score=26.10 Aligned_cols=94 Identities=12% Similarity=0.101 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHH------HHHh----CCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHhh-------
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTR------AIIK----NPVIP-SYFTNRALCYLKLKQYVHCCDDCRKALEL------- 77 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~------ai~~----~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l------- 77 (253)
.|-..|..+-+..+++.|+++|++ |+++ .|... .+--.-|.-+...|+++.|+.+|-.|-.+
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaa 742 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAA 742 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHH
Confidence 344456666677888899888765 4443 33322 12223355566677777777666433111
Q ss_pred -----------------CCCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy11461 78 -----------------EPSL-VKAQFFLGQALHEINHYDEAVKHLQRAY 109 (253)
Q Consensus 78 -----------------~p~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al 109 (253)
|.+. ...|-..+.-|...|+|+-|.+.|.++-
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~ 792 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD 792 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc
Confidence 0111 1123345666777888888888877653
No 475
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=37.63 E-value=2.8e+02 Score=26.11 Aligned_cols=24 Identities=29% Similarity=0.650 Sum_probs=17.0
Q ss_pred cCCCCCCCCCCCCCCCCcCcHHH-HHHHHHH
Q psy11461 214 VGHFDPVTRVKLSADQLIPNFAM-KEVVDNF 243 (253)
Q Consensus 214 ~g~~DP~tr~~l~~~~l~pN~~l-k~a~~~~ 243 (253)
+|.|||-|--. +||..| -+-.++|
T Consensus 396 nGafDp~TmGs------V~NVGLMAqKAEEY 420 (741)
T TIGR00178 396 NGAFDPTTMGT------VPNVGLMAQKAEEY 420 (741)
T ss_pred cCCCCcccccC------CcchhHhHHHHHHh
Confidence 88888887543 588887 5556665
No 476
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=37.53 E-value=1.5e+02 Score=24.85 Aligned_cols=93 Identities=16% Similarity=0.171 Sum_probs=62.2
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------hhCHHHHHHHHHHHHhhCCC------cHHHHH
Q psy11461 23 RYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK----------LKQYVHCCDDCRKALELEPS------LVKAQF 86 (253)
Q Consensus 23 ~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~----------~~~~~~A~~~~~~al~l~p~------~~~a~~ 86 (253)
.++...+.-.|+-.|...+.-.|.+..+...-+.|.-+ --....|.+.+..|+-+... -..+-+
T Consensus 4 ~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~ 83 (368)
T COG5091 4 ALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNF 83 (368)
T ss_pred chhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehh
Confidence 34445566667777777777777765433333333222 22456788888888765322 123467
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 87 FLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+++..++...+|+-|..+|.+|+.+--++
T Consensus 84 ~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 84 RYFVHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 78899999999999999999999886554
No 477
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=36.82 E-value=3.5e+02 Score=25.16 Aligned_cols=63 Identities=17% Similarity=-0.055 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (253)
+-.+++.++.+|... ..++-...+++.++.+-+++..-..+|..|-+ .+-..+...|.+|+..
T Consensus 98 ~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 98 SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 345677888888877 56667777888888888887777778877766 7778888888887754
No 478
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=36.19 E-value=2.6e+02 Score=23.48 Aligned_cols=96 Identities=14% Similarity=0.097 Sum_probs=61.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCC----CCHHHHHHH--HHHHHHhhC----HHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 20 EGNRYFGLRQYEEAINCYTRAIIKNP----VIPSYFTNR--ALCYLKLKQ----YVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 20 ~g~~~~~~g~~~~A~~~y~~ai~~~p----~~~~~~~~~--a~~~~~~~~----~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
....+.+.++|++-...|.+...... .... |+.. +...+.+.. .......++.=++-.|++.-++..+|
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~-Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g 84 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQR-YFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMG 84 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccch-HHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHH
Confidence 45677889999999999988875532 2222 2111 111222221 12345556666788999999998888
Q ss_pred HHHHHhC----------------------CHHHHHHHHHHHHhhchhcc
Q psy11461 90 QALHEIN----------------------HYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 90 ~~~~~~~----------------------~~~~A~~~~~~al~l~p~~~ 116 (253)
..+.... -.+.|...+.+|+.++|...
T Consensus 85 ~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~ 133 (277)
T PF13226_consen 85 MYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPV 133 (277)
T ss_pred HHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 8776652 13667778888888888763
No 479
>KOG1258|consensus
Probab=36.13 E-value=3.7e+02 Score=25.18 Aligned_cols=85 Identities=13% Similarity=0.070 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH-HHHHHHhCCHHHHHHHHHHHH
Q psy11461 31 EEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL-GQALHEINHYDEAVKHLQRAY 109 (253)
Q Consensus 31 ~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l-g~~~~~~~~~~~A~~~~~~al 109 (253)
..+...|...+...|....+|-..|..-.++|..+.+...|++++.--|-+...|..+ +.+....|+.+.-...|.+|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 5666778888999999999999999999999999999999999999989777776543 344445577777778888888
Q ss_pred hhchhc
Q psy11461 110 DLSREQ 115 (253)
Q Consensus 110 ~l~p~~ 115 (253)
.....+
T Consensus 142 ~~vG~d 147 (577)
T KOG1258|consen 142 SYVGLD 147 (577)
T ss_pred Hhcccc
Confidence 876654
No 480
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=36.05 E-value=2.6e+02 Score=24.45 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461 47 IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90 (253)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 90 (253)
...++..+|..+.++|+..+|...|++++.+.++.....+.+..
T Consensus 364 y~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 364 YHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred ccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 44578889999999999999999999999999887776655543
No 481
>PF09256 BaffR-Tall_bind: BAFF-R, TALL-1 binding; InterPro: IPR015336 Cytokines can be grouped into a family on the basis of sequence, functional and structural similarities [, , ]. Tumor necrosis factor (TNF) (also known as TNF-alpha or cachectin) is a monocyte-derived cytotoxin that has been implicated in tumour regression, septic shock and cachexia [, ]. The protein is synthesised as a prohormone with an unusually long and atypical signal sequence, which is absent from the mature secreted cytokine []. A short hydrophobic stretch of amino acids serves to anchor the prohormone in lipid bilayers []. Both the mature protein and a partially-processed form of the hormone are secreted after cleavage of the propeptide []. There are a number of different families of TNF, but all these cytokines seem to form homotrimeric (or heterotrimeric in the case of LT-alpha/beta) complexes that are recognised by their specific receptors. The domain represented by this entry is predominantly found in the tumour necrosis factor receptor superfamily member 13c, BAFF-R and is required for binding to tumour necrosis factor ligand TALL-1 []. ; PDB: 1P0T_c 2HFG_R 1OSX_A 1OQE_N.
Probab=35.87 E-value=12 Score=19.72 Aligned_cols=9 Identities=44% Similarity=0.730 Sum_probs=7.0
Q ss_pred CCCCCCCCC
Q psy11461 216 HFDPVTRVK 224 (253)
Q Consensus 216 ~~DP~tr~~ 224 (253)
.|||++|.=
T Consensus 9 CFDpLvR~C 17 (31)
T PF09256_consen 9 CFDPLVRHC 17 (31)
T ss_dssp EEETTTTEE
T ss_pred hcCHhhhcc
Confidence 589999853
No 482
>PF11349 DUF3151: Protein of unknown function (DUF3151); InterPro: IPR014487 This group represents an uncharacterised conserved protein.
Probab=35.82 E-value=1.7e+02 Score=21.26 Aligned_cols=76 Identities=21% Similarity=0.156 Sum_probs=56.9
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH----hh----------------CCC--cHHHHHHHHHHHHHhC
Q psy11461 39 RAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL----EL----------------EPS--LVKAQFFLGQALHEIN 96 (253)
Q Consensus 39 ~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~l----------------~p~--~~~a~~~lg~~~~~~~ 96 (253)
.....+|.++.+|..+|...+..++.-.|..+.+... .. .|| ..+++..|+.+....|
T Consensus 27 ~vaa~~P~ss~aWA~LAe~al~~g~~v~AYAyARTGYHRGLD~LRr~GWkG~GPVPw~HePNrGfLRal~aLa~AA~~IG 106 (129)
T PF11349_consen 27 EVAAAHPASSLAWAALAEEALAAGRPVTAYAYARTGYHRGLDQLRRNGWKGHGPVPWSHEPNRGFLRALAALARAAQAIG 106 (129)
T ss_pred HHHHHCCCchHHHHHHHHHHHhCCCchhhhhhhhccccccHHHHHHCCCCCCCCCCCccCCccHHHHHHHHHHHHHHHhC
Confidence 4456689999999999999998888777666655432 21 133 4678888999999999
Q ss_pred CHHHHHHHHHHHHhhchh
Q psy11461 97 HYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 97 ~~~~A~~~~~~al~l~p~ 114 (253)
.-+|+..+.+-....+|.
T Consensus 107 E~dE~~Rc~~~L~Dsdp~ 124 (129)
T PF11349_consen 107 ETDEYDRCRQFLRDSDPE 124 (129)
T ss_pred ChhHHHHHHHHHHhCCHH
Confidence 999988887777666665
No 483
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=35.45 E-value=79 Score=21.88 Aligned_cols=27 Identities=15% Similarity=0.026 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRA 40 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~a 40 (253)
+...+..|-...+.|+|++|...+.++
T Consensus 15 Ars~~~eAl~~a~~g~fe~A~~~l~ea 41 (97)
T cd00215 15 ARSKALEALKAAKEGDFAEAEELLEEA 41 (97)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555555566666655555554
No 484
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=35.14 E-value=1.2e+02 Score=19.38 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=8.7
Q ss_pred CCHHHHHHHHHHHHhh
Q psy11461 96 NHYDEAVKHLQRAYDL 111 (253)
Q Consensus 96 ~~~~~A~~~~~~al~l 111 (253)
|++++|+.+|..+++.
T Consensus 20 g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 20 GNYEEALELYKEALDY 35 (75)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5555555555555543
No 485
>KOG0889|consensus
Probab=34.91 E-value=4.2e+02 Score=30.72 Aligned_cols=67 Identities=21% Similarity=0.198 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh----CC----HHHHHHHHHHHHhhchh
Q psy11461 48 PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEI----NH----YDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~----~~----~~~A~~~~~~al~l~p~ 114 (253)
+..+..+|..+.++|+.++|-+.|..|++++..-+++|...|.-+... +. -..|+.+|-+|....-+
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~ 2886 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNS 2886 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccc
Confidence 456788899999999999999999999999888889998888765443 11 24567777777766533
No 486
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=34.66 E-value=32 Score=19.88 Aligned_cols=14 Identities=14% Similarity=0.525 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhhc
Q psy11461 234 FAMKEVVDNFLQEN 247 (253)
Q Consensus 234 ~~lk~a~~~~l~~n 247 (253)
--+++||+.||.++
T Consensus 30 ~Ll~eAle~~l~ky 43 (44)
T PF12651_consen 30 KLLREALEDYLEKY 43 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 34778888888764
No 487
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=34.40 E-value=83 Score=21.86 Aligned_cols=27 Identities=11% Similarity=0.005 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRA 40 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~a 40 (253)
+...+..|....+.|+|++|.+.+.++
T Consensus 17 Ars~~~eAl~~a~~gdfe~A~~~l~eA 43 (99)
T TIGR00823 17 ARSKALEALKAAKAGDFAKARALVEQA 43 (99)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444455555555555555555555444
No 488
>KOG4279|consensus
Probab=34.12 E-value=4.2e+02 Score=25.98 Aligned_cols=143 Identities=15% Similarity=0.195 Sum_probs=0.0
Q ss_pred hCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHH
Q psy11461 62 KQYVHCCDDCRKALELE-PSLVKAQFFLGQALHEI---------NHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAK 131 (253)
Q Consensus 62 ~~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~---------~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~ 131 (253)
|+-++|+...-.+++.. |-.+..+...|.+|..+ +..+.|++.|++|++..|. ....+..+.
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~--------~~sGIN~at 328 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL--------EYSGINLAT 328 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch--------hhccccHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11461 132 KKRWAETEEKRIAQEIELLTYLNRLITEDA-EKELGSIRRDAETKRLDGDAVQEAVMRIEARRDRSMAELNDLFVAIDER 210 (253)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 210 (253)
...+.-..-+.-.+...+.-.|+.++.+.. -+.+..++. .+.-....-+...+.+++....-+|
T Consensus 329 LL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWd---------V~~y~~asVLAnd~~kaiqAae~mf------ 393 (1226)
T KOG4279|consen 329 LLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWD---------VATYFEASVLANDYQKAIQAAEMMF------ 393 (1226)
T ss_pred HHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHh---------HHHhhhhhhhccCHHHHHHHHHHHh------
Q ss_pred chhcCCCCCCCCCCCCCCCCcCcHHHHHHHHHHh
Q psy11461 211 RRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFL 244 (253)
Q Consensus 211 ~~~~g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l 244 (253)
+|++ |+.-||..+++||
T Consensus 394 -------------KLk~----P~WYLkS~meni~ 410 (1226)
T KOG4279|consen 394 -------------KLKP----PVWYLKSTMENIL 410 (1226)
T ss_pred -------------ccCC----ceehHHHHHHHHH
No 489
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=33.88 E-value=84 Score=22.08 Aligned_cols=27 Identities=7% Similarity=-0.002 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRA 40 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~a 40 (253)
+...+..|..+.+.|+|++|.+.+.+|
T Consensus 20 Ars~~~eAl~~ak~gdf~~A~~~l~eA 46 (104)
T PRK09591 20 ARTEVHEAFAAMREGNFDLAEQKLNQS 46 (104)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444555555555555554444
No 490
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=33.64 E-value=14 Score=34.17 Aligned_cols=119 Identities=13% Similarity=0.011 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHH--HhCCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHH--HhhCCC-cHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAI--IKNPV-IPSYFTNRALCYLKLKQYVHCCDDCRKA--LELEPS-LVKA 84 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai--~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a--l~l~p~-~~~a 84 (253)
+.....+..-+..+...|++..|...+.+.- .+.|. ........|.+....|++..|+..+... ..+.+. ....
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~ 100 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARY 100 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHH
Confidence 5556667778889999999999999998766 23332 3445666788999999999999998741 122222 2345
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhch--hcccchHHHHHHHHHH
Q psy11461 85 QFFLGQALHEINHYDEAVKHLQRAYDLSR--EQNLNYGDDIACQLRI 129 (253)
Q Consensus 85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p--~~~~~~~~~~~~~~~~ 129 (253)
+..++.++...|++-+|...+-..-.+-+ .........+|..+..
T Consensus 101 ~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~d~~~~~~N~~~iW~~L~~ 147 (536)
T PF04348_consen 101 HQLRAQAYEQQGDPLAAARERIALDPLLPDPQERQENQDQIWQALSQ 147 (536)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHc
Confidence 56678899999999888887766665544 2223444555554433
No 491
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=33.43 E-value=94 Score=21.98 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIK 43 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~ 43 (253)
+..++..|..++..|+.+.|--+|.+.+.+
T Consensus 38 a~~l~~~A~~~~~egd~E~AYvl~~R~~~L 67 (115)
T PF08969_consen 38 ANKLLREAEEYRQEGDEEQAYVLYMRYLTL 67 (115)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445566666666777777777666666544
No 492
>KOG0739|consensus
Probab=32.50 E-value=2.6e+02 Score=24.12 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh----------chhcccchHHHHHHHHHHHHHH
Q psy11461 64 YVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL----------SREQNLNYGDDIACQLRIAKKK 133 (253)
Q Consensus 64 ~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l----------~p~~~~~~~~~~~~~~~~~~~~ 133 (253)
..+|+....+|+..|. .++|++|..+|..+++. ++.....+......++.++.+.
T Consensus 7 l~kaI~lv~kA~~eD~---------------a~nY~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkL 71 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDN---------------AKNYEEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEKL 71 (439)
T ss_pred HHHHHHHHHHHhhhcc---------------hhchHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q psy11461 134 RWAETEEK 141 (253)
Q Consensus 134 ~~~~~~~~ 141 (253)
...-.+..
T Consensus 72 K~yL~~~~ 79 (439)
T KOG0739|consen 72 KAYLKEKE 79 (439)
T ss_pred HHHHHhhc
No 493
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=32.13 E-value=72 Score=17.45 Aligned_cols=13 Identities=31% Similarity=0.276 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhC
Q psy11461 84 AQFFLGQALHEIN 96 (253)
Q Consensus 84 a~~~lg~~~~~~~ 96 (253)
..|++|.++....
T Consensus 3 t~FnyAw~Lv~S~ 15 (35)
T PF14852_consen 3 TQFNYAWGLVKSN 15 (35)
T ss_dssp HHHHHHHHHHHSS
T ss_pred chhHHHHHHhcCC
Confidence 3444555555444
No 494
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=32.12 E-value=93 Score=21.45 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRA 40 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~a 40 (253)
+...+..+....+.|+|++|...+.+|
T Consensus 14 Ars~~~eAl~~a~~~~fe~A~~~l~~a 40 (96)
T PF02255_consen 14 ARSLAMEALKAAREGDFEEAEELLKEA 40 (96)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444444444455555554444443
No 495
>KOG1538|consensus
Probab=32.11 E-value=81 Score=29.94 Aligned_cols=83 Identities=14% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE 94 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 94 (253)
..+...+..+.+...+..|.+.|.+.-... .+-..+...++|++|....++--+.-| ..|+..|+-+.+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~k--------siVqlHve~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDLK--------SLVQLHVETQRWDEAFALAEKHPEFKD---DVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccHH--------HHhhheeecccchHhHhhhhhCccccc---cccchHHHHhhh
Q ss_pred hCCHHHHHHHHHHH
Q psy11461 95 INHYDEAVKHLQRA 108 (253)
Q Consensus 95 ~~~~~~A~~~~~~a 108 (253)
..+++||.+.|-+|
T Consensus 817 ~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKA 830 (1081)
T ss_pred hhhHHHHHHHHHHh
No 496
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=31.57 E-value=91 Score=16.78 Aligned_cols=15 Identities=0% Similarity=-0.013 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhhC
Q psy11461 64 YVHCCDDCRKALELE 78 (253)
Q Consensus 64 ~~~A~~~~~~al~l~ 78 (253)
++.|...|++.+...
T Consensus 3 ~dRAR~IyeR~v~~h 17 (32)
T PF02184_consen 3 FDRARSIYERFVLVH 17 (32)
T ss_pred HHHHHHHHHHHHHhC
Confidence 344444444444444
No 497
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.15 E-value=1.3e+02 Score=21.23 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 82 VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 82 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+-.+-.||..|...|+.+.|.+-|+.--.+-|++
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccc
Confidence 3455666666666666666666666665565554
No 498
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.88 E-value=3.7e+02 Score=23.59 Aligned_cols=97 Identities=15% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh---------------------------------CCCCHHHHHHHHHHHHHhhCH
Q psy11461 18 KDEGNRYFGLRQYEEAINCYTRAIIK---------------------------------NPVIPSYFTNRALCYLKLKQY 64 (253)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~y~~ai~~---------------------------------~p~~~~~~~~~a~~~~~~~~~ 64 (253)
.+.|..++..|+|.+....+..+=.. .-.-..+..-+|.-|....++
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~ 141 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDS 141 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcch
Q ss_pred HHHHHHHHHHHhh------------------------------------------------------CCCcHHHHHHHHH
Q psy11461 65 VHCCDDCRKALEL------------------------------------------------------EPSLVKAQFFLGQ 90 (253)
Q Consensus 65 ~~A~~~~~~al~l------------------------------------------------------~p~~~~a~~~lg~ 90 (253)
+.|.--+++|... +=.++.+-|..|.
T Consensus 142 ~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~~l 221 (449)
T COG3014 142 AKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLSGL 221 (449)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Q ss_pred HHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
.+...|++.++...++.++-+.|+
T Consensus 222 f~a~n~dv~kg~~~~~e~~gi~qd 245 (449)
T COG3014 222 FYALNGDVNKGLGYLNEAYGISQD 245 (449)
T ss_pred hcccCccHhHHHHHHHHHhccCch
No 499
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=30.71 E-value=81 Score=23.74 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=26.7
Q ss_pred HHHHHHHHHhC-CHHHHHHHHHHHHhhchhc
Q psy11461 86 FFLGQALHEIN-HYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 86 ~~lg~~~~~~~-~~~~A~~~~~~al~l~p~~ 115 (253)
..+|..+...| +..+|...|-+|+..+|.-
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP 124 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQP 124 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCH
Confidence 34799999999 9999999999999999874
No 500
>KOG3677|consensus
Probab=30.11 E-value=87 Score=27.98 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=36.7
Q ss_pred HHHHHhhCHHHHHHHHHHHHhhCCCcHH-------HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy11461 56 LCYLKLKQYVHCCDDCRKALELEPSLVK-------AQFFLGQALHEINHYDEAVKHLQRAYD 110 (253)
Q Consensus 56 ~~~~~~~~~~~A~~~~~~al~l~p~~~~-------a~~~lg~~~~~~~~~~~A~~~~~~al~ 110 (253)
..+.-+|++.. ..+.+.++|..+. .-|..|.+|..+++|.+|++.|..++-
T Consensus 243 R~H~lLgDhQa----t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 243 RMHILLGDHQA----TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHhhhhHh----hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445777443 5566777775432 237889999999999999999988774
Done!