Query psy11461
Match_columns 253
No_of_seqs 307 out of 2126
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 19:03:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2l_A CHIP, carboxy terminus 100.0 6.5E-33 2.2E-37 231.2 24.3 242 11-253 1-281 (281)
2 4gco_A Protein STI-1; structur 99.9 6.5E-22 2.2E-26 145.1 16.7 112 5-116 4-115 (126)
3 3gyz_A Chaperone protein IPGC; 99.8 7.6E-20 2.6E-24 138.3 15.1 112 4-115 26-137 (151)
4 3q49_B STIP1 homology and U bo 99.8 4.5E-19 1.5E-23 130.3 16.9 131 9-139 4-134 (137)
5 2hr2_A Hypothetical protein; a 99.8 1E-19 3.6E-24 137.3 13.6 106 12-117 9-137 (159)
6 3upv_A Heat shock protein STI1 99.8 1.1E-18 3.7E-23 127.0 16.8 104 11-114 1-104 (126)
7 4gcn_A Protein STI-1; structur 99.8 2.3E-19 7.8E-24 131.5 12.7 104 11-114 5-115 (127)
8 3rkv_A Putative peptidylprolyl 99.8 1.1E-18 3.8E-23 132.7 15.1 108 9-116 6-131 (162)
9 3sz7_A HSC70 cochaperone (SGT) 99.8 5.8E-18 2E-22 128.9 18.4 112 7-118 4-115 (164)
10 2xcb_A PCRH, regulatory protei 99.8 6.4E-18 2.2E-22 125.8 17.5 112 5-116 9-120 (142)
11 2vgx_A Chaperone SYCD; alterna 99.8 5.7E-18 1.9E-22 127.4 15.7 111 7-117 14-124 (148)
12 4ga2_A E3 SUMO-protein ligase 99.8 1E-18 3.4E-23 131.7 10.8 111 7-117 24-135 (150)
13 2f42_A STIP1 homology and U-bo 99.8 1.2E-18 4.2E-23 133.4 8.8 132 117-253 9-179 (179)
14 4gyw_A UDP-N-acetylglucosamine 99.8 9.1E-18 3.1E-22 156.1 16.2 143 8-150 3-145 (723)
15 2pl2_A Hypothetical conserved 99.7 1E-16 3.5E-21 127.8 17.1 131 11-141 2-143 (217)
16 4i17_A Hypothetical protein; T 99.7 1.9E-15 6.5E-20 120.6 23.9 106 11-116 4-110 (228)
17 1hxi_A PEX5, peroxisome target 99.7 5E-17 1.7E-21 117.9 12.8 101 15-115 18-118 (121)
18 2pl2_A Hypothetical conserved 99.7 8.6E-17 2.9E-21 128.3 14.9 112 8-120 33-155 (217)
19 4gyw_A UDP-N-acetylglucosamine 99.7 1.4E-16 4.7E-21 148.3 16.9 119 9-127 38-156 (723)
20 2lni_A Stress-induced-phosphop 99.7 4E-16 1.4E-20 113.2 16.0 113 4-116 6-118 (133)
21 3urz_A Uncharacterized protein 99.7 3.2E-16 1.1E-20 124.1 16.2 113 13-125 3-131 (208)
22 3vtx_A MAMA; tetratricopeptide 99.7 4.9E-16 1.7E-20 119.9 16.6 112 12-123 3-114 (184)
23 1p5q_A FKBP52, FK506-binding p 99.7 4.6E-16 1.6E-20 132.4 17.8 108 10-117 143-265 (336)
24 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 6.5E-16 2.2E-20 136.8 17.5 108 10-117 264-386 (457)
25 2h6f_A Protein farnesyltransfe 99.7 1.2E-16 4.2E-21 138.3 12.5 116 9-124 92-208 (382)
26 1a17_A Serine/threonine protei 99.7 7.4E-15 2.5E-19 110.6 20.8 106 11-116 10-115 (166)
27 1elw_A TPR1-domain of HOP; HOP 99.7 3.4E-15 1.2E-19 105.6 17.0 104 13-116 3-106 (118)
28 2dba_A Smooth muscle cell asso 99.7 2.6E-15 8.7E-20 111.0 16.9 109 7-115 21-132 (148)
29 4i17_A Hypothetical protein; T 99.7 1.8E-15 6.1E-20 120.8 17.1 113 12-124 40-161 (228)
30 3vtx_A MAMA; tetratricopeptide 99.7 3.7E-15 1.3E-19 114.9 18.3 128 9-136 34-161 (184)
31 2h6f_A Protein farnesyltransfe 99.7 2.5E-16 8.5E-21 136.4 12.5 117 9-125 126-243 (382)
32 2vyi_A SGTA protein; chaperone 99.7 2.5E-15 8.5E-20 108.2 15.9 110 7-116 5-114 (131)
33 2fbn_A 70 kDa peptidylprolyl i 99.7 1.8E-15 6.2E-20 118.5 16.2 105 11-115 35-155 (198)
34 4ga2_A E3 SUMO-protein ligase 99.7 2.3E-17 7.9E-22 124.2 5.1 105 19-123 2-106 (150)
35 2kck_A TPR repeat; tetratricop 99.7 5.9E-16 2E-20 108.7 10.6 106 10-115 2-110 (112)
36 2xev_A YBGF; tetratricopeptide 99.6 4.7E-15 1.6E-19 107.4 14.3 101 15-115 3-109 (129)
37 3urz_A Uncharacterized protein 99.6 6.1E-15 2.1E-19 116.7 15.9 104 10-113 34-155 (208)
38 2e2e_A Formate-dependent nitri 99.6 1.1E-14 3.6E-19 111.8 16.7 108 9-116 39-149 (177)
39 3qky_A Outer membrane assembly 99.6 3.6E-14 1.2E-18 115.6 20.4 109 9-117 10-132 (261)
40 1ihg_A Cyclophilin 40; ppiase 99.6 6.4E-15 2.2E-19 127.0 16.2 103 13-115 222-340 (370)
41 1elr_A TPR2A-domain of HOP; HO 99.6 1.6E-14 5.4E-19 104.0 15.5 103 12-114 2-111 (131)
42 1zu2_A Mitochondrial import re 99.6 2.8E-15 9.7E-20 112.8 10.8 90 26-115 14-124 (158)
43 1na0_A Designed protein CTPR3; 99.6 4.4E-14 1.5E-18 100.7 16.7 104 13-116 8-111 (125)
44 3as5_A MAMA; tetratricopeptide 99.6 8.3E-14 2.8E-18 106.1 19.0 107 9-115 37-143 (186)
45 1hh8_A P67PHOX, NCF-2, neutrop 99.6 2.6E-14 8.9E-19 112.5 16.0 103 13-115 36-154 (213)
46 2if4_A ATFKBP42; FKBP-like, al 99.6 1.4E-15 4.7E-20 129.6 8.3 107 11-117 176-299 (338)
47 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.2E-14 2.1E-18 114.0 15.8 107 10-116 39-145 (275)
48 4abn_A Tetratricopeptide repea 99.6 4.1E-14 1.4E-18 125.8 15.8 138 9-147 97-252 (474)
49 2vsy_A XCC0866; transferase, g 99.6 4.7E-14 1.6E-18 127.8 16.2 116 6-121 15-130 (568)
50 3gyz_A Chaperone protein IPGC; 99.6 4.2E-15 1.4E-19 112.1 7.6 108 32-139 20-127 (151)
51 2fo7_A Synthetic consensus TPR 99.6 9.9E-14 3.4E-18 99.9 14.5 102 15-116 2-103 (136)
52 3k9i_A BH0479 protein; putativ 99.6 3.2E-15 1.1E-19 107.3 6.5 91 26-116 2-95 (117)
53 3uq3_A Heat shock protein STI1 99.6 9.3E-14 3.2E-18 111.6 15.6 106 9-114 134-239 (258)
54 2q7f_A YRRB protein; TPR, prot 99.6 1.8E-13 6.2E-18 109.2 17.0 107 10-116 53-159 (243)
55 4abn_A Tetratricopeptide repea 99.6 3E-14 1E-18 126.7 13.5 138 10-148 133-290 (474)
56 1w3b_A UDP-N-acetylglucosamine 99.6 5E-14 1.7E-18 120.9 14.1 105 11-115 64-168 (388)
57 2l6j_A TPR repeat-containing p 99.6 5.2E-15 1.8E-19 104.2 6.5 94 13-106 3-102 (111)
58 3uq3_A Heat shock protein STI1 99.6 2E-13 6.7E-18 109.7 16.5 106 14-119 79-210 (258)
59 4gco_A Protein STI-1; structur 99.6 2E-14 6.9E-19 104.9 9.6 109 39-147 4-112 (126)
60 1w3b_A UDP-N-acetylglucosamine 99.6 1.2E-13 4.3E-18 118.5 16.1 106 11-116 132-237 (388)
61 1wao_1 Serine/threonine protei 99.5 1.5E-14 5.3E-19 128.7 10.6 108 11-118 3-110 (477)
62 3qky_A Outer membrane assembly 99.5 3.9E-13 1.3E-17 109.4 18.0 108 8-115 46-181 (261)
63 3as5_A MAMA; tetratricopeptide 99.5 1.1E-13 3.7E-18 105.4 13.5 109 9-117 3-111 (186)
64 2q7f_A YRRB protein; TPR, prot 99.5 1.8E-13 6.2E-18 109.2 15.3 108 10-117 87-194 (243)
65 2pzi_A Probable serine/threoni 99.5 1.1E-14 3.7E-19 135.1 9.2 140 8-148 427-566 (681)
66 2vq2_A PILW, putative fimbrial 99.5 2.5E-13 8.6E-18 106.8 15.8 102 9-110 3-105 (225)
67 2vq2_A PILW, putative fimbrial 99.5 5.3E-13 1.8E-17 105.0 17.4 111 10-120 38-151 (225)
68 4eqf_A PEX5-related protein; a 99.5 1E-13 3.5E-18 117.9 14.2 108 12-119 63-170 (365)
69 1hh8_A P67PHOX, NCF-2, neutrop 99.5 1E-13 3.5E-18 109.0 12.9 102 12-116 4-105 (213)
70 2y4t_A DNAJ homolog subfamily 99.5 2.8E-13 9.7E-18 118.0 16.8 113 4-116 16-128 (450)
71 3ieg_A DNAJ homolog subfamily 99.5 2.8E-13 9.4E-18 113.8 16.1 105 13-117 2-109 (359)
72 4eqf_A PEX5-related protein; a 99.5 2.9E-13 9.8E-18 115.1 16.0 109 10-118 95-249 (365)
73 2fo7_A Synthetic consensus TPR 99.5 3.5E-13 1.2E-17 97.0 14.2 105 10-114 31-135 (136)
74 1fch_A Peroxisomal targeting s 99.5 3.2E-13 1.1E-17 114.5 15.9 103 13-115 216-318 (368)
75 2y4t_A DNAJ homolog subfamily 99.5 1.1E-12 3.9E-17 114.2 19.6 104 13-116 210-329 (450)
76 2vgx_A Chaperone SYCD; alterna 99.5 7E-14 2.4E-18 104.8 10.1 108 31-138 4-111 (148)
77 2yhc_A BAMD, UPF0169 lipoprote 99.5 2.9E-13 9.8E-18 108.2 13.9 105 13-117 3-131 (225)
78 2pzi_A Probable serine/threoni 99.5 3.9E-14 1.3E-18 131.3 10.0 112 10-122 463-574 (681)
79 2ho1_A Type 4 fimbrial biogene 99.5 5.4E-13 1.8E-17 107.4 15.4 136 9-144 31-169 (252)
80 1fch_A Peroxisomal targeting s 99.5 8.2E-13 2.8E-17 112.0 16.6 107 13-119 63-169 (368)
81 2gw1_A Mitochondrial precursor 99.5 1E-12 3.5E-17 116.0 17.5 111 12-123 4-114 (514)
82 2kat_A Uncharacterized protein 99.5 9.9E-13 3.4E-17 93.6 14.2 85 32-116 3-87 (115)
83 3hym_B Cell division cycle pro 99.5 8.1E-13 2.8E-17 109.9 15.8 108 10-117 86-194 (330)
84 2ho1_A Type 4 fimbrial biogene 99.5 9E-13 3.1E-17 106.0 15.3 133 10-142 67-201 (252)
85 3cv0_A Peroxisome targeting si 99.5 6.6E-13 2.2E-17 110.4 14.7 106 10-115 168-273 (327)
86 1na3_A Designed protein CTPR2; 99.5 9E-13 3.1E-17 89.2 12.4 87 10-96 5-91 (91)
87 2yhc_A BAMD, UPF0169 lipoprote 99.5 7.8E-13 2.7E-17 105.7 13.7 108 8-115 35-180 (225)
88 3hym_B Cell division cycle pro 99.5 1.4E-12 4.7E-17 108.5 15.3 106 9-114 120-225 (330)
89 2xcb_A PCRH, regulatory protei 99.5 1.1E-12 3.7E-17 97.2 12.4 102 35-136 5-106 (142)
90 3u4t_A TPR repeat-containing p 99.5 3.2E-13 1.1E-17 109.8 10.3 106 11-117 34-143 (272)
91 3qou_A Protein YBBN; thioredox 99.4 6.5E-13 2.2E-17 110.3 12.1 125 11-135 114-238 (287)
92 3u4t_A TPR repeat-containing p 99.4 2.1E-13 7.2E-18 110.9 8.9 114 14-128 3-120 (272)
93 3ieg_A DNAJ homolog subfamily 99.4 1.6E-12 5.5E-17 109.1 14.6 112 10-121 33-159 (359)
94 3mkr_A Coatomer subunit epsilo 99.4 3.7E-12 1.3E-16 106.0 16.4 110 11-120 127-238 (291)
95 1a17_A Serine/threonine protei 99.4 2.7E-12 9.3E-17 96.3 14.0 105 10-114 43-149 (166)
96 3cv0_A Peroxisome targeting si 99.4 2.8E-12 9.6E-17 106.5 15.0 107 12-118 19-125 (327)
97 2e2e_A Formate-dependent nitri 99.4 4.9E-13 1.7E-17 102.4 9.2 99 20-118 16-117 (177)
98 3fp2_A TPR repeat-containing p 99.4 3.8E-12 1.3E-16 113.2 16.0 108 14-121 276-383 (537)
99 1xnf_A Lipoprotein NLPI; TPR, 99.4 9E-12 3.1E-16 101.1 17.0 103 10-113 73-175 (275)
100 3fp2_A TPR repeat-containing p 99.4 6.4E-12 2.2E-16 111.8 17.3 109 10-118 306-414 (537)
101 2vsy_A XCC0866; transferase, g 99.4 3.3E-12 1.1E-16 115.6 15.4 110 9-118 52-164 (568)
102 2kc7_A BFR218_protein; tetratr 99.4 6.8E-13 2.3E-17 91.7 8.3 93 17-117 3-96 (99)
103 3edt_B KLC 2, kinesin light ch 99.4 3.2E-12 1.1E-16 103.7 13.4 103 9-111 38-156 (283)
104 3mkr_A Coatomer subunit epsilo 99.4 3.6E-12 1.2E-16 106.1 13.9 95 22-116 174-269 (291)
105 1p5q_A FKBP52, FK506-binding p 99.4 4.7E-12 1.6E-16 107.5 14.0 98 14-111 196-294 (336)
106 2r5s_A Uncharacterized protein 99.4 3.9E-12 1.3E-16 97.6 12.1 104 11-115 37-141 (176)
107 3ma5_A Tetratricopeptide repea 99.4 5.3E-12 1.8E-16 87.9 11.3 74 43-116 2-75 (100)
108 3qou_A Protein YBBN; thioredox 99.4 4E-12 1.4E-16 105.5 12.5 107 9-115 146-252 (287)
109 2xpi_A Anaphase-promoting comp 99.4 1.6E-11 5.6E-16 110.8 17.4 120 10-129 369-488 (597)
110 1qqe_A Vesicular transport pro 99.4 1.7E-12 5.7E-17 107.9 10.1 105 12-116 75-192 (292)
111 2r5s_A Uncharacterized protein 99.4 4.4E-13 1.5E-17 102.9 5.7 122 12-134 4-126 (176)
112 2ond_A Cleavage stimulation fa 99.4 1.5E-11 5.1E-16 102.8 15.3 110 10-119 46-171 (308)
113 3upv_A Heat shock protein STI1 99.4 1.2E-11 4.2E-16 89.2 12.5 82 45-126 1-82 (126)
114 4gcn_A Protein STI-1; structur 99.4 2.4E-11 8.2E-16 88.4 14.1 74 47-120 7-80 (127)
115 2xpi_A Anaphase-promoting comp 99.4 1.5E-11 5E-16 111.1 15.7 105 10-114 403-507 (597)
116 1qqe_A Vesicular transport pro 99.4 6.2E-12 2.1E-16 104.5 12.0 104 13-116 116-233 (292)
117 2gw1_A Mitochondrial precursor 99.3 1.3E-11 4.4E-16 109.0 13.7 139 9-147 299-446 (514)
118 2ond_A Cleavage stimulation fa 99.3 3.6E-11 1.2E-15 100.5 15.3 110 10-119 95-206 (308)
119 2vyi_A SGTA protein; chaperone 99.3 2.1E-11 7.1E-16 87.3 11.9 89 10-98 42-130 (131)
120 3edt_B KLC 2, kinesin light ch 99.3 9.6E-12 3.3E-16 100.9 10.7 108 8-115 79-202 (283)
121 2lni_A Stress-induced-phosphop 99.3 2.7E-11 9.4E-16 87.2 11.9 89 9-97 45-133 (133)
122 3k9i_A BH0479 protein; putativ 99.3 1E-11 3.5E-16 88.7 9.4 82 10-91 23-104 (117)
123 3q49_B STIP1 homology and U bo 99.3 1.8E-10 6E-15 83.8 16.0 88 42-129 3-90 (137)
124 4g1t_A Interferon-induced prot 99.3 5.4E-11 1.8E-15 104.4 15.6 109 10-118 47-174 (472)
125 1wao_1 Serine/threonine protei 99.3 2.8E-12 9.7E-17 114.0 7.2 107 10-116 36-155 (477)
126 1hxi_A PEX5, peroxisome target 99.3 5.5E-11 1.9E-15 85.8 12.7 80 50-129 19-98 (121)
127 4a1s_A PINS, partner of inscut 99.3 1.2E-10 4E-15 100.2 17.0 104 11-114 45-158 (411)
128 3ma5_A Tetratricopeptide repea 99.3 2.6E-11 9E-16 84.3 10.3 72 9-80 2-73 (100)
129 3nf1_A KLC 1, kinesin light ch 99.3 6.1E-11 2.1E-15 97.6 14.3 107 6-112 19-141 (311)
130 3sz7_A HSC70 cochaperone (SGT) 99.3 4.4E-11 1.5E-15 90.4 11.9 86 44-129 7-92 (164)
131 3rkv_A Putative peptidylprolyl 99.3 1.9E-11 6.4E-16 92.3 9.7 89 10-98 59-148 (162)
132 2fbn_A 70 kDa peptidylprolyl i 99.3 3.2E-11 1.1E-15 94.0 11.1 97 14-110 88-185 (198)
133 1zu2_A Mitochondrial import re 99.3 2.3E-11 7.7E-16 91.5 9.7 75 9-83 31-126 (158)
134 3nf1_A KLC 1, kinesin light ch 99.3 5.1E-11 1.7E-15 98.1 12.7 103 9-111 64-182 (311)
135 3sf4_A G-protein-signaling mod 99.3 5.5E-10 1.9E-14 95.3 19.4 107 10-116 5-121 (406)
136 3ulq_A Response regulator aspa 99.2 5.1E-11 1.7E-15 102.2 12.2 106 9-114 138-256 (383)
137 1dce_A Protein (RAB geranylger 99.2 9.4E-11 3.2E-15 106.3 14.3 113 9-121 58-183 (567)
138 3ro2_A PINS homolog, G-protein 99.2 5E-10 1.7E-14 92.6 17.5 104 13-116 4-117 (338)
139 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 3.9E-11 1.3E-15 106.1 11.3 91 14-104 317-407 (457)
140 2if4_A ATFKBP42; FKBP-like, al 99.2 1.1E-11 3.7E-16 105.4 7.3 102 15-116 231-333 (338)
141 3dra_A Protein farnesyltransfe 99.2 1.7E-10 5.9E-15 96.6 14.5 114 9-122 62-186 (306)
142 3ro3_A PINS homolog, G-protein 99.2 9.9E-11 3.4E-15 86.6 11.7 106 10-115 5-122 (164)
143 3gw4_A Uncharacterized protein 99.2 2.2E-10 7.5E-15 88.7 13.9 105 11-115 23-140 (203)
144 1ouv_A Conserved hypothetical 99.2 4E-10 1.4E-14 91.9 16.1 99 10-112 2-108 (273)
145 2hr2_A Hypothetical protein; a 99.2 1.3E-10 4.3E-15 87.6 11.8 72 48-119 11-101 (159)
146 1na0_A Designed protein CTPR3; 99.2 2.8E-10 9.6E-15 80.5 13.0 87 10-96 39-125 (125)
147 3ulq_A Response regulator aspa 99.2 1.4E-10 4.7E-15 99.5 13.0 106 10-115 180-297 (383)
148 2ifu_A Gamma-SNAP; membrane fu 99.2 1.4E-10 4.8E-15 96.9 12.2 104 12-116 74-189 (307)
149 3dss_A Geranylgeranyl transfer 99.2 9E-10 3.1E-14 93.0 16.9 116 7-122 57-185 (331)
150 1elw_A TPR1-domain of HOP; HOP 99.2 3.7E-10 1.3E-14 79.2 12.2 83 10-92 34-116 (118)
151 4g1t_A Interferon-induced prot 99.2 1.4E-10 4.9E-15 101.6 12.1 106 10-115 243-367 (472)
152 2c2l_A CHIP, carboxy terminus 99.2 3E-09 1E-13 87.8 19.2 104 45-148 1-104 (281)
153 2qfc_A PLCR protein; TPR, HTH, 99.2 4.2E-10 1.4E-14 93.2 14.0 101 14-114 115-228 (293)
154 1ihg_A Cyclophilin 40; ppiase 99.2 1.4E-10 4.9E-15 99.7 11.6 96 9-104 268-363 (370)
155 3u3w_A Transcriptional activat 99.2 8.2E-11 2.8E-15 97.5 9.6 103 13-115 154-270 (293)
156 3bee_A Putative YFRE protein; 99.2 5.2E-10 1.8E-14 76.9 12.0 85 44-130 2-89 (93)
157 2kat_A Uncharacterized protein 99.2 3E-10 1E-14 80.5 11.1 85 8-92 13-99 (115)
158 2ifu_A Gamma-SNAP; membrane fu 99.2 1E-10 3.5E-15 97.8 9.7 106 9-115 31-148 (307)
159 1na3_A Designed protein CTPR2; 99.2 3.5E-10 1.2E-14 76.1 10.4 71 46-116 7-77 (91)
160 2qfc_A PLCR protein; TPR, HTH, 99.2 4.2E-09 1.4E-13 87.1 18.8 104 10-113 71-186 (293)
161 3ro3_A PINS homolog, G-protein 99.2 3.3E-10 1.1E-14 83.8 11.0 102 13-114 48-161 (164)
162 3sf4_A G-protein-signaling mod 99.1 2.8E-10 9.6E-15 97.2 11.9 106 10-115 183-300 (406)
163 2l6j_A TPR repeat-containing p 99.1 3.5E-10 1.2E-14 79.0 10.2 69 47-115 3-71 (111)
164 3q15_A PSP28, response regulat 99.1 5.1E-10 1.8E-14 95.9 12.9 104 12-115 180-294 (378)
165 2xev_A YBGF; tetratricopeptide 99.1 1.1E-09 3.8E-14 78.6 12.8 87 8-94 33-122 (129)
166 3dss_A Geranylgeranyl transfer 99.1 2.5E-09 8.5E-14 90.3 16.5 110 9-118 103-229 (331)
167 4a1s_A PINS, partner of inscut 99.1 2.3E-10 8E-15 98.4 10.3 105 11-115 220-336 (411)
168 1dce_A Protein (RAB geranylger 99.1 4.8E-10 1.6E-14 101.7 12.6 111 9-119 102-229 (567)
169 3u3w_A Transcriptional activat 99.1 1.2E-09 4E-14 90.5 13.4 101 16-116 117-230 (293)
170 3n71_A Histone lysine methyltr 99.1 2.1E-09 7.2E-14 95.6 15.7 98 16-113 311-424 (490)
171 3q15_A PSP28, response regulat 99.1 5.1E-10 1.8E-14 95.9 11.4 105 9-113 136-253 (378)
172 3ro2_A PINS homolog, G-protein 99.1 4.1E-10 1.4E-14 93.1 10.4 106 10-115 179-296 (338)
173 3dra_A Protein farnesyltransfe 99.1 2E-09 6.7E-14 90.1 14.2 109 9-117 98-221 (306)
174 1ouv_A Conserved hypothetical 99.1 4.6E-09 1.6E-13 85.5 16.2 100 11-114 35-146 (273)
175 3q7a_A Farnesyltransferase alp 99.1 1.1E-09 3.9E-14 92.9 12.8 113 9-121 83-206 (349)
176 2dba_A Smooth muscle cell asso 99.1 1.1E-09 3.8E-14 80.2 11.3 80 14-93 65-144 (148)
177 2kck_A TPR repeat; tetratricop 99.1 8.5E-11 2.9E-15 81.8 4.7 71 44-114 2-72 (112)
178 4f3v_A ESX-1 secretion system 99.1 1.1E-09 3.8E-14 90.2 11.2 99 16-114 137-240 (282)
179 3gw4_A Uncharacterized protein 99.1 1.1E-09 3.6E-14 84.8 10.3 108 9-116 61-181 (203)
180 2ooe_A Cleavage stimulation fa 99.1 3.1E-09 1.1E-13 95.2 14.7 107 10-116 268-390 (530)
181 2kc7_A BFR218_protein; tetratr 99.0 4.1E-09 1.4E-13 72.3 11.1 67 51-117 3-70 (99)
182 2ooe_A Cleavage stimulation fa 99.0 6.5E-09 2.2E-13 93.1 15.2 111 9-119 316-428 (530)
183 2v5f_A Prolyl 4-hydroxylase su 99.0 5.4E-09 1.9E-13 73.2 11.5 78 12-89 3-87 (104)
184 3rjv_A Putative SEL1 repeat pr 99.0 4.6E-09 1.6E-13 83.0 11.7 97 12-111 48-158 (212)
185 3q7a_A Farnesyltransferase alp 99.0 4.4E-09 1.5E-13 89.3 12.2 110 8-117 117-243 (349)
186 1elr_A TPR2A-domain of HOP; HO 99.0 1.6E-08 5.4E-13 72.0 13.3 70 46-115 2-71 (131)
187 3rjv_A Putative SEL1 repeat pr 99.0 5.3E-09 1.8E-13 82.6 11.5 97 12-113 16-120 (212)
188 1pc2_A Mitochondria fission pr 99.0 1.1E-08 3.9E-13 76.0 12.3 88 28-115 12-104 (152)
189 3qww_A SET and MYND domain-con 99.0 4E-09 1.4E-13 92.4 11.1 93 21-113 305-413 (433)
190 3n71_A Histone lysine methyltr 98.9 3.1E-09 1.1E-13 94.6 9.6 107 6-112 343-465 (490)
191 4f3v_A ESX-1 secretion system 98.9 3.6E-09 1.2E-13 87.2 9.2 97 14-111 102-200 (282)
192 3qwp_A SET and MYND domain-con 98.9 2E-08 7E-13 87.9 13.5 99 15-113 288-402 (429)
193 3bee_A Putative YFRE protein; 98.9 1.9E-08 6.4E-13 69.0 9.7 73 9-81 1-76 (93)
194 3ly7_A Transcriptional activat 98.8 1.2E-07 4E-12 80.6 14.7 105 10-114 192-309 (372)
195 1hz4_A MALT regulatory protein 98.8 5.8E-08 2E-12 82.5 12.7 101 14-114 93-206 (373)
196 1hz4_A MALT regulatory protein 98.8 6.2E-08 2.1E-12 82.3 12.7 103 13-115 52-168 (373)
197 1klx_A Cysteine rich protein B 98.8 1.3E-07 4.3E-12 69.5 12.2 91 20-114 31-129 (138)
198 2xm6_A Protein corresponding t 98.7 4.8E-07 1.7E-11 80.1 16.6 96 13-112 290-397 (490)
199 3mv2_B Coatomer subunit epsilo 98.7 1.8E-06 6E-11 72.0 17.6 103 12-114 98-210 (310)
200 1pc2_A Mitochondria fission pr 98.7 1.5E-07 5.3E-12 69.9 9.6 82 10-91 28-114 (152)
201 2v5f_A Prolyl 4-hydroxylase su 98.6 6.4E-07 2.2E-11 62.4 11.7 70 47-116 4-80 (104)
202 2xm6_A Protein corresponding t 98.6 3.3E-06 1.1E-10 74.7 18.3 97 12-112 253-361 (490)
203 3u64_A Protein TP_0956; tetrat 98.6 7.1E-07 2.4E-11 73.2 12.3 106 10-115 148-273 (301)
204 3e4b_A ALGK; tetratricopeptide 98.6 2.8E-07 9.6E-12 81.1 10.1 94 16-112 178-281 (452)
205 1nzn_A CGI-135 protein, fissio 98.5 3.2E-06 1.1E-10 60.6 12.1 93 24-116 11-108 (126)
206 1xi4_A Clathrin heavy chain; a 98.5 1.3E-05 4.3E-10 78.4 19.1 93 11-108 1102-1221(1630)
207 3e4b_A ALGK; tetratricopeptide 98.4 1.8E-06 6.1E-11 75.9 12.0 97 11-113 245-353 (452)
208 3qwp_A SET and MYND domain-con 98.4 8E-07 2.8E-11 77.8 7.7 90 6-95 321-426 (429)
209 4b4t_Q 26S proteasome regulato 98.3 1.2E-05 4.2E-10 69.2 14.4 60 17-76 7-83 (434)
210 1xi4_A Clathrin heavy chain; a 98.3 1.6E-05 5.3E-10 77.8 15.5 95 14-116 1195-1314(1630)
211 3qww_A SET and MYND domain-con 98.3 1.4E-06 4.8E-11 76.3 7.4 72 6-77 332-411 (433)
212 4b4t_Q 26S proteasome regulato 98.2 2.2E-05 7.4E-10 67.6 14.3 69 48-116 135-209 (434)
213 1klx_A Cysteine rich protein B 98.2 6.1E-06 2.1E-10 60.4 9.0 80 27-112 8-91 (138)
214 3u64_A Protein TP_0956; tetrat 98.2 2.1E-05 7E-10 64.6 12.7 75 44-118 148-241 (301)
215 3mv2_B Coatomer subunit epsilo 98.2 1.1E-05 3.8E-10 67.2 10.9 103 11-114 133-243 (310)
216 1wgm_A Ubiquitin conjugation f 98.1 2E-06 6.8E-11 59.3 3.7 36 216-251 58-93 (98)
217 3ffl_A Anaphase-promoting comp 98.1 2.4E-05 8.1E-10 58.6 9.6 96 13-108 19-148 (167)
218 1b89_A Protein (clathrin heavy 98.1 3.4E-06 1.2E-10 73.5 5.0 88 15-115 123-240 (449)
219 1b89_A Protein (clathrin heavy 98.0 1.2E-05 4.1E-10 70.1 8.2 96 16-113 150-274 (449)
220 1nzn_A CGI-135 protein, fissio 98.0 4.3E-05 1.5E-09 54.7 9.0 81 11-91 32-117 (126)
221 4e6h_A MRNA 3'-END-processing 97.9 0.00025 8.4E-09 65.5 14.5 102 10-111 339-463 (679)
222 4h7y_A Dual specificity protei 97.8 0.00041 1.4E-08 51.0 12.0 106 9-115 8-127 (161)
223 3ly7_A Transcriptional activat 97.8 0.00014 4.8E-09 61.8 10.8 76 40-116 269-344 (372)
224 3o48_A Mitochondria fission 1 97.8 0.0005 1.7E-08 49.4 11.9 71 46-116 38-112 (134)
225 2kre_A Ubiquitin conjugation f 97.8 1.4E-05 4.9E-10 55.1 3.6 33 216-248 64-96 (100)
226 3o48_A Mitochondria fission 1 97.7 0.00047 1.6E-08 49.5 10.8 80 12-91 38-121 (134)
227 2kr4_A Ubiquitin conjugation f 97.7 1.4E-05 4.9E-10 53.4 2.3 33 216-248 49-81 (85)
228 1y8m_A FIS1; mitochondria, unk 97.7 0.0022 7.6E-08 46.6 13.6 71 45-115 36-110 (144)
229 1y8m_A FIS1; mitochondria, unk 97.6 0.00078 2.7E-08 49.0 10.9 80 11-90 36-119 (144)
230 4e6h_A MRNA 3'-END-processing 97.6 0.0015 5.2E-08 60.2 14.5 108 10-117 374-505 (679)
231 3m62_A Ubiquitin conjugation f 97.4 5.6E-05 1.9E-09 71.0 2.9 35 214-248 925-959 (968)
232 3ffl_A Anaphase-promoting comp 97.2 0.0026 8.8E-08 47.6 9.1 80 12-92 61-165 (167)
233 2ff4_A Probable regulatory pro 97.0 0.017 5.8E-07 49.6 13.6 96 16-111 117-234 (388)
234 1t1h_A Gspef-atpub14, armadill 97.0 0.00047 1.6E-08 44.9 2.9 35 215-249 43-77 (78)
235 1zbp_A Hypothetical protein VP 96.9 0.027 9.2E-07 45.5 13.0 63 22-84 5-67 (273)
236 2uy1_A Cleavage stimulation fa 96.8 0.046 1.6E-06 48.4 15.5 103 11-115 210-353 (493)
237 4g26_A Pentatricopeptide repea 96.6 0.13 4.3E-06 45.7 16.4 100 13-112 104-205 (501)
238 2yu4_A E3 SUMO-protein ligase 96.5 0.0012 4.3E-08 44.7 2.6 34 215-248 48-84 (94)
239 4gns_B Protein CSD3, chitin bi 96.4 0.011 3.7E-07 55.0 8.5 59 50-108 339-397 (754)
240 4gns_B Protein CSD3, chitin bi 96.3 0.013 4.3E-07 54.5 8.5 61 14-74 337-397 (754)
241 1ya0_A SMG-7 transcript varian 96.0 0.063 2.2E-06 47.5 11.4 79 16-94 154-232 (497)
242 4h7y_A Dual specificity protei 95.8 0.05 1.7E-06 40.0 8.1 70 42-112 7-90 (161)
243 2uy1_A Cleavage stimulation fa 95.8 0.12 4E-06 45.7 12.3 94 14-108 286-380 (493)
244 3kae_A CDC27, possible protein 95.8 0.28 9.6E-06 36.9 12.2 92 18-114 37-146 (242)
245 3txn_A 26S proteasome regulato 94.9 0.49 1.7E-05 40.5 12.8 93 19-111 104-210 (394)
246 1zbp_A Hypothetical protein VP 94.8 0.38 1.3E-05 38.8 10.8 59 57-115 6-64 (273)
247 1ya0_A SMG-7 transcript varian 94.7 0.14 4.9E-06 45.2 9.0 64 50-113 154-217 (497)
248 3mkq_B Coatomer subunit alpha; 94.6 0.57 1.9E-05 35.3 10.9 48 23-75 14-61 (177)
249 4b4t_R RPN7, 26S proteasome re 94.5 0.15 5E-06 44.3 8.7 99 14-112 131-238 (429)
250 2bay_A PRE-mRNA splicing facto 94.4 0.015 5.3E-07 35.8 1.6 22 214-236 38-59 (61)
251 4g26_A Pentatricopeptide repea 93.8 3.3 0.00011 36.5 17.6 85 28-112 84-170 (501)
252 2ff4_A Probable regulatory pro 93.5 0.37 1.3E-05 41.1 9.0 61 16-76 173-233 (388)
253 4b4t_S RPN3, 26S proteasome re 93.3 0.22 7.5E-06 44.1 7.3 105 11-117 178-305 (523)
254 3kae_A CDC27, possible protein 92.7 2.4 8.3E-05 31.9 14.8 69 12-80 60-146 (242)
255 4b4t_P 26S proteasome regulato 92.7 3.1 0.0001 36.1 13.8 100 13-112 136-248 (445)
256 3spa_A Mtrpol, DNA-directed RN 92.5 3.3 0.00011 40.0 14.4 97 15-111 128-230 (1134)
257 4fhn_B Nucleoporin NUP120; pro 92.3 0.39 1.3E-05 47.0 8.3 94 13-106 841-962 (1139)
258 3ztg_A E3 ubiquitin-protein li 92.2 0.11 3.8E-06 34.5 3.2 35 216-250 51-86 (92)
259 3mkq_A Coatomer beta'-subunit; 91.3 2 6.9E-05 39.5 11.8 46 24-74 662-707 (814)
260 3mkq_A Coatomer beta'-subunit; 91.3 1.3 4.3E-05 40.9 10.3 75 18-108 633-707 (814)
261 2crb_A Nuclear receptor bindin 90.9 0.39 1.3E-05 31.8 4.5 36 6-41 7-42 (97)
262 3lpz_A GET4 (YOR164C homolog); 88.9 8.2 0.00028 32.1 12.2 92 15-106 36-160 (336)
263 2kkx_A Uncharacterized protein 88.6 0.17 5.7E-06 33.9 1.4 18 214-231 66-83 (102)
264 1qsa_A Protein (soluble lytic 87.5 2.8 9.6E-05 38.1 9.3 90 20-110 258-347 (618)
265 3t5v_B Nuclear mRNA export pro 87.2 2.8 9.6E-05 36.5 8.7 88 28-115 140-254 (455)
266 2wpv_A GET4, UPF0363 protein Y 86.9 10 0.00035 31.2 11.6 27 80-106 132-158 (312)
267 3mkq_B Coatomer subunit alpha; 86.8 6.1 0.00021 29.6 9.3 44 60-108 17-60 (177)
268 4gq2_M Nucleoporin NUP120; bet 83.9 17 0.00058 34.8 13.1 92 20-115 816-930 (950)
269 2cpt_A SKD1 protein, vacuolar 83.4 1.4 4.8E-05 30.7 4.1 32 11-42 15-46 (117)
270 3ax2_A Mitochondrial import re 83.3 3.4 0.00012 26.1 5.5 33 18-50 21-53 (73)
271 3t5x_A PCI domain-containing p 82.7 2.8 9.6E-05 32.2 6.0 53 48-100 14-71 (203)
272 4fhn_B Nucleoporin NUP120; pro 82.3 10 0.00034 37.1 11.1 94 20-117 818-934 (1139)
273 2w2u_A Hypothetical P60 katani 82.0 7.6 0.00026 25.1 7.0 32 12-43 17-48 (83)
274 1wy6_A Hypothetical protein ST 82.0 7.4 0.00025 28.1 7.4 83 26-113 73-156 (172)
275 3fau_A NEDD4-binding protein 2 81.8 0.66 2.3E-05 30.1 1.8 17 236-252 54-70 (82)
276 3txn_A 26S proteasome regulato 81.6 12 0.00042 31.8 10.1 99 14-112 19-169 (394)
277 2v6x_A Vacuolar protein sortin 80.4 2.6 8.8E-05 27.4 4.4 32 11-42 10-41 (85)
278 4b4t_S RPN3, 26S proteasome re 80.1 3.6 0.00012 36.4 6.4 70 10-81 227-303 (523)
279 3fl2_A E3 ubiquitin-protein li 79.9 1.5 5.1E-05 30.6 3.3 32 216-247 88-120 (124)
280 4a5x_A MITD1, MIT domain-conta 79.4 7.8 0.00027 25.2 6.5 23 89-111 23-45 (86)
281 2v6y_A AAA family ATPase, P60 78.7 11 0.00037 24.3 7.1 32 12-43 9-40 (83)
282 4a5x_A MITD1, MIT domain-conta 78.1 2.4 8.1E-05 27.8 3.6 32 12-43 14-45 (86)
283 4gq2_M Nucleoporin NUP120; bet 77.2 9 0.00031 36.6 8.8 71 12-82 838-932 (950)
284 1z6u_A NP95-like ring finger p 76.8 1.8 6.2E-05 31.5 3.1 30 217-246 115-145 (150)
285 2cfu_A SDSA1; SDS-hydrolase, l 76.3 7.3 0.00025 35.6 7.6 46 17-62 452-497 (658)
286 2crb_A Nuclear receptor bindin 74.9 5.5 0.00019 26.3 4.6 27 49-75 16-42 (97)
287 2y43_A E3 ubiquitin-protein li 74.1 1.7 5.7E-05 29.0 2.1 32 216-247 58-89 (99)
288 1om2_A Protein (mitochondrial 72.8 7.6 0.00026 25.8 5.0 28 19-46 25-52 (95)
289 3ax2_A Mitochondrial import re 72.4 5.5 0.00019 25.1 4.0 30 86-115 21-50 (73)
290 3t5x_A PCI domain-containing p 71.6 7.8 0.00027 29.6 5.6 39 11-49 11-49 (203)
291 1jm7_B BARD1, BRCA1-associated 70.6 4.4 0.00015 27.8 3.7 30 217-246 57-86 (117)
292 2ijq_A Hypothetical protein; s 69.3 29 0.001 25.4 8.0 31 16-46 34-64 (161)
293 4b4t_R RPN7, 26S proteasome re 69.3 13 0.00043 32.0 7.1 68 47-114 130-200 (429)
294 2d9i_A NEDD4-binding protein 2 69.0 2.5 8.4E-05 28.2 2.0 17 235-251 61-77 (96)
295 1wfd_A Hypothetical protein 15 68.6 8.3 0.00029 25.5 4.5 30 13-42 14-43 (93)
296 1wy6_A Hypothetical protein ST 68.2 31 0.0011 24.9 9.7 61 17-77 93-154 (172)
297 2vkj_A TM1634; membrane protei 65.3 15 0.00052 24.0 5.0 32 12-43 51-82 (106)
298 2o8p_A 14-3-3 domain containin 63.9 50 0.0017 25.7 10.3 63 14-76 120-196 (227)
299 1om2_A Protein (mitochondrial 63.1 9 0.00031 25.5 3.8 30 86-115 24-53 (95)
300 3re2_A Predicted protein; meni 60.9 31 0.0011 29.1 7.3 47 67-113 276-327 (472)
301 2w2u_A Hypothetical P60 katani 60.2 31 0.0011 22.1 6.5 14 64-77 16-29 (83)
302 3spa_A Mtrpol, DNA-directed RN 57.6 60 0.0021 31.5 9.6 63 50-112 129-195 (1134)
303 1jm7_A BRCA1, breast cancer ty 57.6 4.1 0.00014 27.5 1.5 29 217-245 60-88 (112)
304 2rpa_A Katanin P60 ATPase-cont 56.9 17 0.00058 23.2 4.1 30 14-43 12-41 (78)
305 2v6y_A AAA family ATPase, P60 53.0 42 0.0014 21.4 6.4 14 65-78 9-22 (83)
306 3u84_A Menin; MLL, JUND, ledgf 51.7 51 0.0017 28.4 7.3 47 67-113 298-349 (550)
307 2cfu_A SDSA1; SDS-hydrolase, l 50.9 35 0.0012 31.1 6.9 48 50-97 451-498 (658)
308 2vkc_A NEDD4-binding protein 2 48.8 7.6 0.00026 27.6 1.7 17 235-251 106-122 (135)
309 2egp_A Tripartite motif-contai 46.9 1.3 4.6E-05 27.9 -2.4 25 216-240 54-78 (79)
310 3t5v_B Nuclear mRNA export pro 45.2 57 0.002 28.3 7.0 62 20-81 182-254 (455)
311 3lew_A SUSD-like carbohydrate 43.2 68 0.0023 27.9 7.3 48 64-111 174-232 (495)
312 4gq4_A Menin; tumor suppressor 43.0 85 0.0029 27.0 7.3 46 67-112 283-333 (489)
313 3re2_A Predicted protein; meni 42.5 59 0.002 27.4 6.2 64 13-76 254-324 (472)
314 3kez_A Putative sugar binding 42.4 71 0.0024 27.5 7.3 48 64-111 170-225 (461)
315 3myv_A SUSD superfamily protei 42.2 58 0.002 28.0 6.7 46 31-76 165-218 (454)
316 3hct_A TNF receptor-associated 41.8 9 0.00031 26.2 1.2 28 217-244 55-82 (118)
317 2yhe_A SEC-alkyl sulfatase; hy 47.8 5.5 0.00019 36.5 0.0 51 15-65 462-512 (668)
318 1qsa_A Protein (soluble lytic 41.6 95 0.0033 28.0 8.1 55 22-76 293-347 (618)
319 2ymb_A MITD1, MIT domain-conta 41.5 5.5 0.00019 31.7 0.0 33 11-43 20-52 (257)
320 2rpa_A Katanin P60 ATPase-cont 41.4 66 0.0023 20.4 6.2 27 85-111 15-41 (78)
321 2ckl_A Polycomb group ring fin 41.4 15 0.0005 24.6 2.2 30 216-245 51-84 (108)
322 3lew_A SUSD-like carbohydrate 41.2 77 0.0026 27.6 7.3 30 48-77 203-232 (495)
323 3myv_A SUSD superfamily protei 40.7 82 0.0028 27.0 7.4 48 64-111 164-219 (454)
324 3esl_A Checkpoint serine/threo 40.6 1.2E+02 0.0041 23.1 10.7 79 35-114 58-147 (202)
325 2l48_A N-acetylmuramoyl-L-alan 40.5 12 0.00042 24.2 1.5 22 230-252 62-83 (85)
326 1o3u_A Conserved hypothetical 39.8 80 0.0027 22.0 6.0 33 11-43 13-45 (135)
327 1wfd_A Hypothetical protein 15 39.4 78 0.0027 20.6 7.9 17 94-110 27-43 (93)
328 2p58_C Putative type III secre 39.4 60 0.002 21.9 4.7 79 21-105 14-92 (116)
329 3u84_A Menin; MLL, JUND, ledgf 39.2 68 0.0023 27.6 6.2 45 32-76 297-346 (550)
330 3kez_A Putative sugar binding 39.2 87 0.003 26.9 7.3 45 32-76 172-224 (461)
331 3mkr_B Coatomer subunit alpha; 38.1 1.7E+02 0.0057 24.0 13.1 101 14-114 102-230 (320)
332 3mcx_A SUSD superfamily protei 37.6 96 0.0033 26.7 7.4 48 64-111 176-231 (477)
333 3pmr_A Amyloid-like protein 1; 37.1 1.3E+02 0.0044 23.2 7.0 127 28-157 72-201 (219)
334 1oqe_K Tumor necrosis factor r 36.8 7.4 0.00025 19.6 0.0 10 216-225 9-18 (31)
335 3htk_C E3 SUMO-protein ligase 36.6 12 0.0004 30.0 1.2 29 217-245 220-250 (267)
336 2ecv_A Tripartite motif-contai 36.3 2.6 8.7E-05 26.8 -2.3 25 216-240 60-84 (85)
337 4ar0_A Type IV pilus biogenesi 36.1 8.8 0.0003 27.0 0.4 51 199-251 42-92 (128)
338 3mcx_A SUSD superfamily protei 35.7 70 0.0024 27.6 6.2 47 31-77 177-231 (477)
339 2ecw_A Tripartite motif-contai 34.9 2.3 8E-05 27.0 -2.7 25 216-240 60-84 (85)
340 2e2a_A Protein (enzyme IIA); h 34.6 54 0.0018 22.1 4.1 18 58-75 30-47 (105)
341 1wcr_A PTS system, N, N'-diace 34.2 55 0.0019 22.0 4.1 18 58-75 28-45 (103)
342 4a1g_A Mitotic checkpoint seri 33.4 68 0.0023 23.2 4.8 33 12-44 99-131 (152)
343 3mv2_A Coatomer subunit alpha; 33.2 2E+02 0.0069 23.6 13.2 100 15-114 115-239 (325)
344 3lrq_A E3 ubiquitin-protein li 32.6 20 0.0007 23.6 1.7 30 216-245 59-88 (100)
345 4gq4_A Menin; tumor suppressor 32.4 1E+02 0.0035 26.5 6.2 63 13-75 261-330 (489)
346 3bu8_A Telomeric repeat-bindin 31.7 35 0.0012 26.4 3.1 42 56-97 122-163 (235)
347 2ay0_A Bifunctional PUTA prote 31.7 26 0.00089 20.7 1.9 20 232-251 29-48 (58)
348 2dl1_A Spartin; SPG20, MIT, st 31.5 92 0.0031 21.4 4.8 44 63-114 18-61 (116)
349 3k1s_A PTS system, cellobiose- 31.1 65 0.0022 21.8 4.1 17 59-75 33-49 (109)
350 2cwy_A Hypothetical protein TT 30.5 1.1E+02 0.0039 19.9 6.0 25 20-44 7-31 (94)
351 2br9_A 14-3-3E, 14-3-3 protein 30.4 75 0.0026 24.8 4.9 46 64-111 153-202 (234)
352 3umh_A Amyloid beta A4 protein 29.9 1.9E+02 0.0064 22.1 7.9 105 50-157 88-194 (211)
353 3l8r_A PTCA, putative PTS syst 29.5 71 0.0024 22.1 4.1 19 58-76 47-65 (120)
354 3esl_A Checkpoint serine/threo 29.2 1.9E+02 0.0064 22.0 8.9 70 9-79 75-146 (202)
355 2ra1_A Surface layer protein; 28.9 2.6E+02 0.009 23.6 11.3 106 23-130 112-221 (412)
356 2lju_A Putative oxidoreductase 28.7 25 0.00086 23.9 1.6 25 228-252 60-84 (108)
357 3bqo_A Telomeric repeat-bindin 28.6 29 0.001 26.4 2.1 33 23-55 126-158 (211)
358 3hdx_A SUSD homolog, SUSD supe 28.3 1.3E+02 0.0044 25.9 6.6 48 64-111 156-226 (478)
359 3hcs_A TNF receptor-associated 28.1 20 0.00068 26.2 1.2 28 217-244 55-82 (170)
360 4err_A Autotransporter adhesin 27.8 39 0.0013 22.0 2.3 18 233-250 47-64 (90)
361 2kpm_A Uncharacterized protein 27.4 17 0.00058 24.6 0.6 18 234-251 24-41 (105)
362 2pmr_A Uncharacterized protein 27.3 85 0.0029 20.3 3.9 26 13-38 38-63 (87)
363 2dl1_A Spartin; SPG20, MIT, st 27.2 78 0.0027 21.7 3.9 44 28-79 17-60 (116)
364 2oo2_A Hypothetical protein AF 27.1 87 0.003 20.2 3.9 26 13-38 34-59 (86)
365 3qnk_A Putative lipoprotein; a 27.0 1.4E+02 0.0047 26.0 6.6 29 48-76 182-210 (517)
366 3hdx_A SUSD homolog, SUSD supe 26.8 1.5E+02 0.0052 25.4 6.8 30 48-77 197-226 (478)
367 3snx_A SUSD homolog, putative 26.5 1.3E+02 0.0045 25.8 6.3 31 47-77 190-220 (460)
368 3qtm_A Uncharacterized protein 26.3 2.5E+02 0.0087 22.5 7.7 48 190-244 152-199 (346)
369 3snx_A SUSD homolog, putative 26.2 1.4E+02 0.0046 25.7 6.3 47 64-110 160-219 (460)
370 2zqe_A MUTS2 protein; alpha/be 25.1 29 0.00099 22.2 1.4 16 235-250 46-61 (83)
371 1o9d_A 14-3-3-like protein C; 25.1 1E+02 0.0036 24.4 4.9 17 95-111 191-207 (260)
372 3qnk_A Putative lipoprotein; a 24.8 1.7E+02 0.0059 25.4 6.8 48 64-111 153-211 (517)
373 2ijq_A Hypothetical protein; s 24.6 2E+02 0.007 20.8 10.7 60 52-111 36-104 (161)
374 3e21_A HFAF1, FAS-associated f 24.0 40 0.0014 18.9 1.6 14 238-251 22-35 (45)
375 2cpt_A SKD1 protein, vacuolar 23.8 1.8E+02 0.0061 19.8 10.1 16 95-110 31-46 (117)
376 3uzd_A 14-3-3 protein gamma; s 23.5 1.2E+02 0.0041 23.9 4.9 17 95-111 187-203 (248)
377 2jpu_A ORF C02003 protein; sol 23.4 1.1E+02 0.0038 21.4 4.2 32 12-43 5-36 (129)
378 2xze_A STAM-binding protein; h 22.0 1.1E+02 0.0037 21.8 4.1 25 52-76 44-68 (146)
379 3i4g_A SUSD-like carbohydrate 21.9 2.2E+02 0.0074 24.9 6.9 48 64-111 167-227 (528)
380 2gpe_A Bifunctional protein PU 21.8 35 0.0012 19.3 1.2 18 232-249 29-46 (52)
381 3jq1_A SUSD superfamily protei 21.8 1.2E+02 0.0042 26.1 5.2 29 48-76 180-208 (481)
382 3msv_A Nuclear import adaptor, 21.3 3.4E+02 0.012 22.2 7.8 48 190-244 199-246 (393)
383 2hfg_R Tumor necrosis factor r 21.3 20 0.00069 20.2 0.0 10 216-225 21-30 (51)
384 3s6n_M SurviVal motor neuron p 21.1 72 0.0025 16.8 2.1 14 98-111 18-31 (37)
385 2ckl_B Ubiquitin ligase protei 21.1 49 0.0017 23.9 2.1 30 216-245 91-121 (165)
386 3jq1_A SUSD superfamily protei 21.1 1.3E+02 0.0044 26.0 5.2 47 64-110 154-208 (481)
387 4e17_B Catenin alpha-1; four h 20.6 53 0.0018 17.9 1.6 12 235-246 23-34 (40)
No 1
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=100.00 E-value=6.5e-33 Score=231.16 Aligned_cols=242 Identities=53% Similarity=0.911 Sum_probs=208.6
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 90 (253)
|..+..++.+|+.++..|+|++|+..|++++..+|.++.++.++|.+|..+|++++|+.++++++.++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRR 170 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 170 (253)
++..+|++++|+..|+++++++|++...+...+...+...+...|......+...++++..++..++....++.+..+..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~ 160 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQR 160 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSG
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999988777788888888898889988877777778889999988887777777776665
Q ss_pred hhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-------------------------------------
Q psy11461 171 DAETKRLDGDAVQEAVMRIEARRDRSMAELNDLFVAIDERRRK------------------------------------- 213 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~------------------------------------- 213 (253)
.....+ ++..+...+..+....+....++.++|..+.+....
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~ 239 (281)
T 2c2l_A 161 NHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHL 239 (281)
T ss_dssp GGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHH
T ss_pred hhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHH
Confidence 443332 222234445556666767788899999765442221
Q ss_pred --cCCCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhcCcccCC
Q psy11461 214 --VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253 (253)
Q Consensus 214 --~g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n~wa~~~ 253 (253)
.|.++|+||+|++..+|+||..|+++|+.|+.+|||++||
T Consensus 240 ~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~~~~ 281 (281)
T 2c2l_A 240 QRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVEDY 281 (281)
T ss_dssp HHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSSCC
T ss_pred HHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCCCCC
Confidence 4557999999999999999999999999999999999998
No 2
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.89 E-value=6.5e-22 Score=145.08 Aligned_cols=112 Identities=23% Similarity=0.433 Sum_probs=106.7
Q ss_pred CCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461 5 HNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA 84 (253)
Q Consensus 5 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (253)
++..-+|..+..++++|+.+++.|+|++|+.+|++++..+|.++.+|.++|.||..+|++++|+.+|+++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 85 QFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
|+++|.++..+|++++|+..|+++++++|++.
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence 99999999999999999999999999999984
No 3
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.84 E-value=7.6e-20 Score=138.31 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=107.9
Q ss_pred CCCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH
Q psy11461 4 SHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK 83 (253)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (253)
.+...-+|..+..++.+|..++..|+|++|+..|++++..+|.++.+|.++|.||..+|++++|+..|++++.++|+++.
T Consensus 26 ~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~ 105 (151)
T 3gyz_A 26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105 (151)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 84 AQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+++++|.++..+|++++|+..|++++++.|+.
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999985
No 4
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.83 E-value=4.5e-19 Score=130.33 Aligned_cols=131 Identities=56% Similarity=0.947 Sum_probs=121.0
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
.++..+..++.+|..++..|+|++|+.+|.+++..+|.++.++.++|.++..+|++++|+..+++++.++|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHH
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETE 139 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (253)
|.++..+|++++|+..|+++++++|++...+...+...+..+....|...+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e 134 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 134 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997666678888888888877776543
No 5
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.83 E-value=1e-19 Score=137.34 Aligned_cols=106 Identities=16% Similarity=0.146 Sum_probs=100.7
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHhhCHHHHHHHHHHHHhh--
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV-------IPS-----YFTNRALCYLKLKQYVHCCDDCRKALEL-- 77 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~al~l-- 77 (253)
..+..++..|+.++..|+|++|+.+|++||.++|+ +.. +|.|+|.|+.++|+|++|+.+|++||++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 35778999999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred -----CCCcHHHH----HHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 78 -----EPSLVKAQ----FFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 78 -----~p~~~~a~----~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
+|++.++| +++|.++..+|++++|+.+|+++++++|++..
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 99999999 99999999999999999999999999999854
No 6
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.1e-18 Score=126.96 Aligned_cols=104 Identities=28% Similarity=0.456 Sum_probs=100.9
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 90 (253)
|..+..++.+|..++..|+|++|+..|.+++..+|.++.++.++|.++..+|++++|+.++++++.++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
++..+|++++|+..|+++++++|+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~ 104 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAE 104 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999954
No 7
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.81 E-value=2.3e-19 Score=131.53 Aligned_cols=104 Identities=27% Similarity=0.420 Sum_probs=98.6
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc-------HH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL-------VK 83 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-------~~ 83 (253)
++.+.+++++|+.+++.|+|++|+.+|++|+.++|.++.+|.++|.||..+|+|++|+.+|.+++.++|++ ..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999998875 36
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 84 AQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
+++++|.++..+|++++|+..|++++...|+
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 8999999999999999999999999998876
No 8
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.80 E-value=1.1e-18 Score=132.65 Aligned_cols=108 Identities=23% Similarity=0.305 Sum_probs=101.8
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHhhCHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK------------------NPVIPSYFTNRALCYLKLKQYVHCCDD 70 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~ 70 (253)
.....+..++..|+.++..|+|++|+..|++++.. +|.++.+|.++|.||.++|+|++|+.+
T Consensus 6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34457889999999999999999999999999999 777789999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 71 CRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 71 ~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
|.+++.++|+++.+++++|.++..+|++++|+..|+++++++|++.
T Consensus 86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 9999999999999999999999999999999999999999999973
No 9
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.80 E-value=5.8e-18 Score=128.86 Aligned_cols=112 Identities=26% Similarity=0.375 Sum_probs=107.2
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 86 (253)
....+..+..++.+|..++..|+|++|+.+|.+++..+|.++.++.++|.+|..+|++++|+.+|++++.++|++..+++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (164)
T 3sz7_A 4 SMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83 (164)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461 87 FLGQALHEINHYDEAVKHLQRAYDLSREQNLN 118 (253)
Q Consensus 87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 118 (253)
.+|.++..+|++++|+..|+++++++|++...
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 115 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 99999999999999999999999999998553
No 10
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.79 E-value=6.4e-18 Score=125.80 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=107.6
Q ss_pred CCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461 5 HNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA 84 (253)
Q Consensus 5 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (253)
+....+|..+..++.+|..++..|+|++|+..|.+++..+|.++.+|.++|.++..+|++++|+.+|++++.++|+++.+
T Consensus 9 ~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 88 (142)
T 2xcb_A 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF 88 (142)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence 45567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 85 QFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
++.+|.++..+|++++|+..|+++++++|+++
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999874
No 11
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.78 E-value=5.7e-18 Score=127.37 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=106.4
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 86 (253)
...+|..+..++.+|..++..|+|++|+..|.+++..+|.++.+|.++|.++..+|++++|+..|++++.++|+++.+++
T Consensus 14 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 14 NEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred HcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 44578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 87 FLGQALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
.+|.++..+|++++|+..|+++++++|+++.
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 9999999999999999999999999998643
No 12
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.78 E-value=1e-18 Score=131.73 Aligned_cols=111 Identities=15% Similarity=0.095 Sum_probs=103.5
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 86 (253)
.+.+|..+..++.+|..|+..|+|++|+.+|.+++.++|+++.+|.++|.+|..+|++++|+..|+++++++|+++.+++
T Consensus 24 ~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 103 (150)
T 4ga2_A 24 TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL 103 (150)
T ss_dssp SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence 34567788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHH-HHHHHhhchhccc
Q psy11461 87 FLGQALHEINHYDEAVKH-LQRAYDLSREQNL 117 (253)
Q Consensus 87 ~lg~~~~~~~~~~~A~~~-~~~al~l~p~~~~ 117 (253)
.+|.++..+|++++|... +++|++++|+++.
T Consensus 104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~ 135 (150)
T 4ga2_A 104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSPA 135 (150)
T ss_dssp HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH
Confidence 999999999999887766 5899999999843
No 13
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.76 E-value=1.2e-18 Score=133.36 Aligned_cols=132 Identities=50% Similarity=0.893 Sum_probs=90.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHH
Q psy11461 117 LNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDAVQEAVMRIEARRDRS 196 (253)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (253)
..+.++|+..++++++..|...+++|+.+..++..++..++..+.++++.++...... .+..+...++..+++..
T Consensus 9 ~~~~~~I~~~l~~aKk~~w~~~e~~r~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 83 (179)
T 2f42_A 9 LNFGDDIPSALRIAKKKRWNSIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDD-----SQNGGDISKMKSKHDKY 83 (179)
T ss_dssp -------------CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----hhhhHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999998877654322 12234455577788889
Q ss_pred HHHHHHHHHHHHhhchh---------------------------------------cCCCCCCCCCCCCCCCCcCcHHHH
Q psy11461 197 MAELNDLFVAIDERRRK---------------------------------------VGHFDPVTRVKLSADQLIPNFAMK 237 (253)
Q Consensus 197 ~~~~~~~f~~~~~~~~~---------------------------------------~g~~DP~tr~~l~~~~l~pN~~lk 237 (253)
+.++.++|+.+.+.... +|.+||+||+|++..+|+||.+||
T Consensus 84 i~~~~~l~~~~~~~~~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk 163 (179)
T 2f42_A 84 LMDMDELFSQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMK 163 (179)
T ss_dssp HHHHHHHHHHHHHGGGCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHH
T ss_pred HHHHHHHHHHHhhhccccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHH
Confidence 99999999877654322 466899999999999999999999
Q ss_pred HHHHHHhhhcCcccCC
Q psy11461 238 EVVDNFLQENDWAYEY 253 (253)
Q Consensus 238 ~a~~~~l~~n~wa~~~ 253 (253)
++|+.|+.+||||+||
T Consensus 164 ~~Ie~~~~~~~~~~d~ 179 (179)
T 2f42_A 164 EVIDAFIQENGWVEDY 179 (179)
T ss_dssp HHHHHHHHHCTTCC--
T ss_pred HHHHHHHHHCCCcCCC
Confidence 9999999999999998
No 14
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.76 E-value=9.1e-18 Score=156.14 Aligned_cols=143 Identities=13% Similarity=0.123 Sum_probs=124.1
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
+..|..+.++.++|+.+...|++++|+.+|++|++++|+++.++.++|.+|.++|++++|+..|++|++++|++..++++
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 88 LGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELL 150 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (253)
+|.++..+|++++|++.|++|++++|++...+...........+...+....++.+...|...
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~ 145 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFP 145 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999999999999877666655555555555555555556666555433
No 15
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.74 E-value=1e-16 Score=127.84 Aligned_cols=131 Identities=15% Similarity=0.174 Sum_probs=100.7
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 90 (253)
|.++..++.+|..++..|++++|+..|++++..+|.++.++.++|.++..+|++++|+..++++++++|++..+++.+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45567788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHh-----------CCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 91 ALHEI-----------NHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEK 141 (253)
Q Consensus 91 ~~~~~-----------~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (253)
++..+ |++++|+..|+++++++|++...+...........+........++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 143 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 88888 8888888888888888888765554444444444444444333333
No 16
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.74 E-value=1.9e-15 Score=120.62 Aligned_cols=106 Identities=18% Similarity=0.219 Sum_probs=102.1
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNP-VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
+.++..++..|..++..|+|++|+..|.+++..+| .+..+++++|.++..+|++++|+..+.+++.++|++..+++.+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 44568999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
.++..+|++++|+..|+++++++|++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~ 110 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNA 110 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence 999999999999999999999999975
No 17
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.73 E-value=5e-17 Score=117.95 Aligned_cols=101 Identities=14% Similarity=0.073 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE 94 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 94 (253)
..++.+|..++..|++++|+..|.+++..+|.++.+|+++|.++..+|++++|+..+++++.++|++..+++.+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHhhchhc
Q psy11461 95 INHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 95 ~~~~~~A~~~~~~al~l~p~~ 115 (253)
.|++++|+..|+++++++|++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCcCC
Confidence 999999999999999999986
No 18
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=8.6e-17 Score=128.31 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=105.9
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------hCHHHHHHHHHHHHh
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKL-----------KQYVHCCDDCRKALE 76 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~al~ 76 (253)
..+|..+..++.+|..+...|++++|+..|++++..+|+++.++.++|.++..+ |++++|+..++++++
T Consensus 33 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 112 (217)
T 2pl2_A 33 KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112 (217)
T ss_dssp TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461 77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120 (253)
Q Consensus 77 l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 120 (253)
++|++..+++.+|.++..+|++++|+..|+++++++ ++...+.
T Consensus 113 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 155 (217)
T 2pl2_A 113 VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS 155 (217)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHH
Confidence 999999999999999999999999999999999999 6544433
No 19
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.72 E-value=1.4e-16 Score=148.25 Aligned_cols=119 Identities=14% Similarity=0.161 Sum_probs=110.4
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
-+|..+.++.++|..+...|++++|+.+|++|++++|+++.+|+++|.+|..+|++++|+..|++|++++|++..+++++
T Consensus 38 l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~L 117 (723)
T 4gyw_A 38 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNL 117 (723)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHH
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQL 127 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 127 (253)
|.++..+|++++|+..|++|++++|++...+........
T Consensus 118 g~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 118 ASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence 999999999999999999999999998665554444333
No 20
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.72 E-value=4e-16 Score=113.18 Aligned_cols=113 Identities=31% Similarity=0.516 Sum_probs=107.6
Q ss_pred CCCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH
Q psy11461 4 SHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK 83 (253)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (253)
....+..+..+.+++.+|..++..|+|++|+..|.+++..+|.++.++.++|.++...|++++|+..+++++.++|.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 85 (133)
T 2lni_A 6 HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK 85 (133)
T ss_dssp CTTCCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCCCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence 34455778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 84 AQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
+++.+|.++..+|++++|+..|.++++++|.+.
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 118 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch
Confidence 999999999999999999999999999999874
No 21
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.71 E-value=3.2e-16 Score=124.12 Aligned_cols=113 Identities=14% Similarity=0.049 Sum_probs=105.6
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHhhCHHHHHHHHHHHHh
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTN----------------RALCYLKLKQYVHCCDDCRKALE 76 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~ 76 (253)
.+..++..|..++..|+|++|+.+|.+++..+|+++.+++. +|.+|..+|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHH
Q psy11461 77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIAC 125 (253)
Q Consensus 77 l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 125 (253)
++|+++.+++.+|.++..+|++++|+..|+++++++|++...+......
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY 131 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986655444433
No 22
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.71 E-value=4.9e-16 Score=119.86 Aligned_cols=112 Identities=19% Similarity=0.217 Sum_probs=104.5
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA 91 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 91 (253)
+++..|+++|..++..|+|++|+..|++++..+|+++.++.++|.+|..+|++++|+..+.+++..+|++..++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhhchhcccchHHHH
Q psy11461 92 LHEINHYDEAVKHLQRAYDLSREQNLNYGDDI 123 (253)
Q Consensus 92 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 123 (253)
+...++++.|...+.+++.++|.+...+....
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg 114 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLG 114 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 99999999999999999999999855443333
No 23
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.71 E-value=4.6e-16 Score=132.40 Aligned_cols=108 Identities=24% Similarity=0.344 Sum_probs=103.6
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---------------PSYFTNRALCYLKLKQYVHCCDDCRKA 74 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (253)
.|..+..++.+|+.++..|+|++|+.+|.+++.++|.+ +.++.++|.||.++|++++|+.+|+++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999 699999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 75 l~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
+.++|++..+++++|.++..+|++++|+..|+++++++|++..
T Consensus 223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999999999999999999999998743
No 24
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.70 E-value=6.5e-16 Score=136.84 Aligned_cols=108 Identities=24% Similarity=0.417 Sum_probs=100.2
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---------------PSYFTNRALCYLKLKQYVHCCDDCRKA 74 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (253)
.+..+..++.+|+.++..|+|.+|+.+|.+|+.++|.+ ..+|.++|.||.++|+|++|+.+|.+|
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 35678899999999999999999999999999999998 699999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 75 l~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
+.++|++..+++++|.++..+|++++|+..|++|++++|++..
T Consensus 344 l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386 (457)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999999999999999854
No 25
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=1.2e-16 Score=138.30 Aligned_cols=116 Identities=8% Similarity=-0.037 Sum_probs=81.8
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ-YVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
-+|..+.++..+|..+...|++++|+..|.++|.++|.++.+|+++|.++..+|+ +++|+.+|++++.++|++..+|++
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~ 171 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 3455666777777777777777777777777777777777777777777777775 777777777777777777777777
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHH
Q psy11461 88 LGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIA 124 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 124 (253)
+|.++..+|++++|+.+|+++++++|++...+.....
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~ 208 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHH
Confidence 7777777777777777777777777776554443333
No 26
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.69 E-value=7.4e-15 Score=110.60 Aligned_cols=106 Identities=26% Similarity=0.470 Sum_probs=102.3
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 90 (253)
...+..++.+|..++..|+|+.|+..|.+++..+|.++.++.++|.++..+|++++|+..+.+++.++|.+..+++.+|.
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
++..+|++++|+..|.++++++|.+.
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~ 115 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDK 115 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999874
No 27
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.69 E-value=3.4e-15 Score=105.62 Aligned_cols=104 Identities=25% Similarity=0.435 Sum_probs=101.0
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL 92 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 92 (253)
.+..++.+|..++..|++++|+..|.+++..+|.++.++.++|.++..+|++++|+..+.+++.++|.+..+++.+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 93 HEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 93 ~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
..+|++++|+..+.++++++|++.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCH
Confidence 999999999999999999999873
No 28
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-15 Score=111.00 Aligned_cols=109 Identities=33% Similarity=0.435 Sum_probs=104.4
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK 83 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (253)
....+..+..++.+|..++..|+|++|+..|.+++..+|.+ ..++.++|.++..+|++++|+..+.+++.++|++..
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100 (148)
T ss_dssp CCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred CccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence 33557889999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 84 AQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+++.+|.++..+|++++|+..|+++++++|++
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999987
No 29
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.68 E-value=1.8e-15 Score=120.78 Aligned_cols=113 Identities=14% Similarity=0.159 Sum_probs=104.1
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH-------HH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV-------KA 84 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-------~a 84 (253)
.+...++.+|.+++..|++++|+..|.+++..+|.++.++.++|.+|..+|++++|+..+++++.++|++. .+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 119 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIY 119 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 56678888999999999999999999999999999999999999999999999999999999999999998 67
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhchh--cccchHHHHH
Q psy11461 85 QFFLGQALHEINHYDEAVKHLQRAYDLSRE--QNLNYGDDIA 124 (253)
Q Consensus 85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~~~~ 124 (253)
++.+|.++..+|++++|+..|+++++++|+ +...+.....
T Consensus 120 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 120 YLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999999999999999 6544443333
No 30
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.68 E-value=3.7e-15 Score=114.90 Aligned_cols=128 Identities=11% Similarity=0.136 Sum_probs=111.5
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
.+|..+.++..+|.+++..|++++|+..+.+++..+|.++.++.++|.++...++++.|...+.+++.++|++..++..+
T Consensus 34 ~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~l 113 (184)
T 3vtx_A 34 ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKL 113 (184)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHH
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWA 136 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~ 136 (253)
|.++..+|++++|+..|+++++++|.+...+...........+...+.
T Consensus 114 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 114 GLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999998655444444333333333333
No 31
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=2.5e-16 Score=136.39 Aligned_cols=117 Identities=12% Similarity=0.049 Sum_probs=109.7
Q ss_pred CCcccHHHHHHHHHHHHhccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQ-YEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~-~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
.+|..+.+|..+|.++...|+ +++|+.+|.+++.++|+++.+|+++|.++..+|++++|+.+|++++.++|++..+|++
T Consensus 126 l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~ 205 (382)
T 2h6f_A 126 LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHH
Confidence 467889999999999999997 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHH
Q psy11461 88 LGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIAC 125 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 125 (253)
+|.++..+|++++|+.+|+++++++|++...+......
T Consensus 206 lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~ 243 (382)
T 2h6f_A 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV 243 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999986655444433
No 32
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.68 E-value=2.5e-15 Score=108.20 Aligned_cols=110 Identities=33% Similarity=0.524 Sum_probs=104.5
Q ss_pred CCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 86 (253)
....+..+..++.+|..++..|+++.|+..|.+++..+|.++.++.++|.++...|++++|+..+.+++.++|++..+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 84 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 87 FLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
.+|.++..+|++++|+..|.++++++|++.
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 114 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELDPDNE 114 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCccch
Confidence 999999999999999999999999999863
No 33
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.68 E-value=1.8e-15 Score=118.50 Aligned_cols=105 Identities=31% Similarity=0.361 Sum_probs=101.1
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP----------------SYFTNRALCYLKLKQYVHCCDDCRKA 74 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~----------------~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (253)
+..+..++.+|+.++..|+|++|+..|.+++...|.++ .++.++|.|+..+|++++|+.++.++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44677899999999999999999999999999999887 89999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 75 l~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+.++|.+..+++.+|.++..+|++++|+..|+++++++|++
T Consensus 115 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 99999999999999999999999999999999999999987
No 34
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.68 E-value=2.3e-17 Score=124.21 Aligned_cols=105 Identities=17% Similarity=0.020 Sum_probs=94.6
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCH
Q psy11461 19 DEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHY 98 (253)
Q Consensus 19 ~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~ 98 (253)
.+|..+..+|+++.|+..|.+++..+|.++..++++|.+|+++|+|++|+..++++++++|+++.+|+.+|.++..+|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 37888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhchhcccchHHHH
Q psy11461 99 DEAVKHLQRAYDLSREQNLNYGDDI 123 (253)
Q Consensus 99 ~~A~~~~~~al~l~p~~~~~~~~~~ 123 (253)
++|+..|+++++++|++...+....
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la 106 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIA 106 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999865544433
No 35
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.66 E-value=5.9e-16 Score=108.73 Aligned_cols=106 Identities=19% Similarity=0.171 Sum_probs=101.8
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC--cHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS--LVKAQFF 87 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~ 87 (253)
+|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++..+|++++|+..+++++.++|. +..+++.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 35667788999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHh-CCHHHHHHHHHHHHhhchhc
Q psy11461 88 LGQALHEI-NHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 88 lg~~~~~~-~~~~~A~~~~~~al~l~p~~ 115 (253)
+|.++..+ |++++|++++++++...|++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999999 99999999999999999875
No 36
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.65 E-value=4.7e-15 Score=107.42 Aligned_cols=101 Identities=12% Similarity=0.056 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc---HHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP---SYFTNRALCYLKLKQYVHCCDDCRKALELEPSL---VKAQFFL 88 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~l 88 (253)
..++.+|..++..|+|++|+..|.+++..+|.++ .+++++|.++..+|++++|+..+.+++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578899999999999999999999999999988 799999999999999999999999999999999 8999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
|.++..+|++++|+..|+++++..|++
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999999986
No 37
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.65 E-value=6.1e-15 Score=116.72 Aligned_cols=104 Identities=17% Similarity=0.087 Sum_probs=88.1
Q ss_pred CcccHHHHHH----------------HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy11461 10 NNLSDKELKD----------------EGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRK 73 (253)
Q Consensus 10 ~~~~a~~~~~----------------~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 73 (253)
+|.++..++. +|.+++..|++++|+..|.+++..+|.++.++.++|.++..+|++++|+.+|++
T Consensus 34 ~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 113 (208)
T 3urz_A 34 NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEK 113 (208)
T ss_dssp CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556667777 999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhch
Q psy11461 74 ALELEPSLVKAQFFLGQALHEINH--YDEAVKHLQRAYDLSR 113 (253)
Q Consensus 74 al~l~p~~~~a~~~lg~~~~~~~~--~~~A~~~~~~al~l~p 113 (253)
++.++|+++.+++.+|.+++..|. ...+...+.+++...|
T Consensus 114 al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (208)
T 3urz_A 114 ILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK 155 (208)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999876653 3445556666654443
No 38
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.64 E-value=1.1e-14 Score=111.78 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=103.4
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhhCH--HHHHHHHHHHHhhCCCcHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALC-YLKLKQY--VHCCDDCRKALELEPSLVKAQ 85 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~-~~~~~~~--~~A~~~~~~al~l~p~~~~a~ 85 (253)
..|..+..+..+|..++..|++++|+.+|.+++..+|.++.++.++|.+ +...|++ ++|+..+.+++.++|++..++
T Consensus 39 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 118 (177)
T 2e2e_A 39 ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITAL 118 (177)
T ss_dssp HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHH
Confidence 3567889999999999999999999999999999999999999999999 8899999 999999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 86 FFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 86 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
+.+|.++...|++++|+..|.++++++|++.
T Consensus 119 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 119 MLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 9999999999999999999999999999873
No 39
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.64 E-value=3.6e-14 Score=115.64 Aligned_cols=109 Identities=13% Similarity=0.168 Sum_probs=102.1
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc---H
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL---V 82 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~ 82 (253)
..+..+..++.+|..++..|+|++|+..|.+++..+|.+ +.+++.+|.+|..+|++++|+..|++++.++|++ .
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 467789999999999999999999999999999999999 8999999999999999999999999999998854 6
Q ss_pred HHHHHHHHHHHH--------hCCHHHHHHHHHHHHhhchhccc
Q psy11461 83 KAQFFLGQALHE--------INHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 83 ~a~~~lg~~~~~--------~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
.+++.+|.++.. +|++++|+..|+++++..|++..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 132 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL 132 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh
Confidence 789999999999 99999999999999999998754
No 40
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.64 E-value=6.4e-15 Score=127.02 Aligned_cols=103 Identities=32% Similarity=0.553 Sum_probs=99.3
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAII----------------KNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (253)
.+..++.+|+.++..|+|++|+..|++++. .+|.++.+|.++|.||.++|+|++|+.+|++|+.
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 466799999999999999999999999999 7788889999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 77 l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
++|++..+++++|.++..+|++++|+..|++|++++|++
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 340 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999987
No 41
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.63 E-value=1.6e-14 Score=104.03 Aligned_cols=103 Identities=23% Similarity=0.420 Sum_probs=98.9
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc-------HHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL-------VKA 84 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-------~~a 84 (253)
..+..++.+|..++..|+++.|+..|.+++..+|.++.++.++|.++..+|++++|+..+.+++.++|.+ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999887 899
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 85 QFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
++.+|.++...|++++|+..|.+++++.|+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999874
No 42
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.62 E-value=2.8e-15 Score=112.85 Aligned_cols=90 Identities=20% Similarity=0.288 Sum_probs=85.6
Q ss_pred hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCH----------HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy11461 26 GLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQY----------VHCCDDCRKALELEPSLVKAQFFLGQALHEI 95 (253)
Q Consensus 26 ~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~ 95 (253)
+.+.|++|+..|.+++.++|.++.+|+++|.++..++++ ++|+..|++||+++|++..+|+++|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 557899999999999999999999999999999999875 5999999999999999999999999999988
Q ss_pred C-----------CHHHHHHHHHHHHhhchhc
Q psy11461 96 N-----------HYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 96 ~-----------~~~~A~~~~~~al~l~p~~ 115 (253)
| ++++|+.+|++|++++|++
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 5 8999999999999999997
No 43
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.62 E-value=4.4e-14 Score=100.67 Aligned_cols=104 Identities=31% Similarity=0.471 Sum_probs=100.7
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL 92 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 92 (253)
.+..++.+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+++++.++|.+..+++.+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 93 HEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 93 ~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
...|++++|+..|.++++++|++.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~ 111 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNA 111 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcH
Confidence 999999999999999999999873
No 44
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.62 E-value=8.3e-14 Score=106.07 Aligned_cols=107 Identities=20% Similarity=0.266 Sum_probs=72.5
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
..|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+.+++.++|.+..+++.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 116 (186)
T 3as5_A 37 ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRL 116 (186)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
|.++...|++++|+..+.++++..|.+
T Consensus 117 a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 117 GVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 666666666666666666666666654
No 45
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.61 E-value=2.6e-14 Score=112.45 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=64.4
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH----------
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV---------- 82 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---------- 82 (253)
.+..++.+|..++..|++++|+..|.+++..+|.++.++.++|.+|..+|++++|+..+++++.+.|.+.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 3455666666666666666666666666666666666666666666666666666666666666555444
Q ss_pred ------HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 83 ------KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 83 ------~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 566666666666666666666666666666654
No 46
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.60 E-value=1.4e-15 Score=129.61 Aligned_cols=107 Identities=27% Similarity=0.300 Sum_probs=96.4
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhhCHHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP-----------------SYFTNRALCYLKLKQYVHCCDDCRK 73 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~ 73 (253)
+..+..++.+|+.++..|+|.+|+.+|.+++...|.+. .+|.++|.||.++|+|++|+.+|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45788999999999999999999999999999999877 4899999999999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 74 ALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 74 al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
++.++|++..+++++|.++..+|++++|+..|+++++++|++..
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~ 299 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence 99999999999999999999999999999999999999998743
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=6.2e-14 Score=114.01 Aligned_cols=107 Identities=20% Similarity=0.202 Sum_probs=103.8
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
+|..+..++.+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+++++.++|.+..+++.+|
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 118 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
.++..+|++++|+..|+++++++|++.
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999999999874
No 48
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.58 E-value=4.1e-14 Score=125.78 Aligned_cols=138 Identities=12% Similarity=0.058 Sum_probs=120.3
Q ss_pred CCcccHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQY-EEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~-~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
..+..+..++.+|..++..|+| ++|+.+|.+++..+|.++.+|.++|.+|..+|++++|+..|++++.++|+ ..+++.
T Consensus 97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 175 (474)
T 4abn_A 97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQN 175 (474)
T ss_dssp TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHH
T ss_pred cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHH
Confidence 4567899999999999999999 99999999999999999999999999999999999999999999999999 799999
Q ss_pred HHHHHHHh---------CCHHHHHHHHHHHHhhchhcccchHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q psy11461 88 LGQALHEI---------NHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRI--------AKKKRWAETEEKRIAQEI 147 (253)
Q Consensus 88 lg~~~~~~---------~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 147 (253)
+|.++..+ |++++|+..|+++++++|++...+.......... .....+....++.+...|
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence 99999999 9999999999999999999876665555555554 555555555555555455
No 49
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.57 E-value=4.7e-14 Score=127.78 Aligned_cols=116 Identities=13% Similarity=0.093 Sum_probs=105.3
Q ss_pred CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHH
Q psy11461 6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ 85 (253)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 85 (253)
....+|..+..+..+|..++..|++++|+..|++++..+|.++.++.++|.+|..+|++++|+..++++++++|++..++
T Consensus 15 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 94 (568)
T 2vsy_A 15 AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIA 94 (568)
T ss_dssp ------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHH
Q psy11461 86 FFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGD 121 (253)
Q Consensus 86 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 121 (253)
+.+|.++..+|++++|+..|+++++++|++...+..
T Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 130 (568)
T 2vsy_A 95 LWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQ 130 (568)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999999999999987544433
No 50
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.57 E-value=4.2e-15 Score=112.14 Aligned_cols=108 Identities=11% Similarity=-0.032 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 32 EAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 32 ~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
.+-..|.+++.++|+++.+++++|.+++.+|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+.+|++++++
T Consensus 20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 34455778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcccchHHHHHHHHHHHHHHHHHHHH
Q psy11461 112 SREQNLNYGDDIACQLRIAKKKRWAETE 139 (253)
Q Consensus 112 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (253)
+|+++..+...........+...+....
T Consensus 100 ~P~~~~~~~~lg~~~~~lg~~~eA~~~~ 127 (151)
T 3gyz_A 100 GKNDYTPVFHTGQCQLRLKAPLKAKECF 127 (151)
T ss_dssp SSSCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9998776665555555544444443333
No 51
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.57 E-value=9.9e-14 Score=99.89 Aligned_cols=102 Identities=30% Similarity=0.474 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE 94 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 94 (253)
..++.+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+.+++..+|.+..+++.+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHhhchhcc
Q psy11461 95 INHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 95 ~~~~~~A~~~~~~al~l~p~~~ 116 (253)
.|++++|+..+.+++...|.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~ 103 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSA 103 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCH
T ss_pred hcCHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999998763
No 52
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.57 E-value=3.2e-15 Score=107.27 Aligned_cols=91 Identities=14% Similarity=0.228 Sum_probs=83.5
Q ss_pred hccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHH
Q psy11461 26 GLRQYEEAINCYTRAIIK---NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAV 102 (253)
Q Consensus 26 ~~g~~~~A~~~y~~ai~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~ 102 (253)
..|++++|+.+|.+++.. +|.++.++.++|.+|..+|++++|+..+++++.++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 68899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhchhcc
Q psy11461 103 KHLQRAYDLSREQN 116 (253)
Q Consensus 103 ~~~~~al~l~p~~~ 116 (253)
..|++++...|+++
T Consensus 82 ~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 82 ELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHCCCH
T ss_pred HHHHHHHHhCCCcH
Confidence 99999999999873
No 53
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=9.3e-14 Score=111.62 Aligned_cols=106 Identities=28% Similarity=0.437 Sum_probs=101.3
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
..|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++..+|++++|+..+.+++.++|+++.+++.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 213 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 213 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 45778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
|.++..+|++++|+..|+++++++|+
T Consensus 214 ~~~~~~~g~~~~A~~~~~~a~~~~~~ 239 (258)
T 3uq3_A 214 ATAQIAVKEYASALETLDAARTKDAE 239 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhChh
Confidence 99999999999999999999999943
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=1.8e-13 Score=109.18 Aligned_cols=107 Identities=20% Similarity=0.224 Sum_probs=76.7
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
.|..+..+..+|..++..|++++|+..|.+++..+|.++.++..+|.++..+|++++|+..+++++.++|.+..+++.+|
T Consensus 53 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 132 (243)
T 2q7f_A 53 NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLG 132 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45556677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
.++...|++++|+..+.+++++.|.+.
T Consensus 133 ~~~~~~~~~~~A~~~~~~~~~~~~~~~ 159 (243)
T 2q7f_A 133 TVLVKLEQPKLALPYLQRAVELNENDT 159 (243)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccH
Confidence 777777777777777777777766653
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.56 E-value=3e-14 Score=126.66 Aligned_cols=138 Identities=12% Similarity=0.107 Sum_probs=115.6
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---------hCHHHHHHHHHHHHhhCCC
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKL---------KQYVHCCDDCRKALELEPS 80 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~l~p~ 80 (253)
+|..+.++..+|..++..|++++|+.+|.+++..+|+ +.++.++|.++..+ |++++|+..+++++.++|+
T Consensus 133 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 211 (474)
T 4abn_A 133 EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL 211 (474)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC
Confidence 5677899999999999999999999999999999999 79999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHhhch---hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 81 LVKAQFFLGQALHEI--------NHYDEAVKHLQRAYDLSR---EQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIE 148 (253)
Q Consensus 81 ~~~a~~~lg~~~~~~--------~~~~~A~~~~~~al~l~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (253)
+..+|+.+|.++..+ |++++|+..|+++++++| .+...+...............+....++.+...|.
T Consensus 212 ~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 212 DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999 999999999999999999 66555544444444444444444444444444443
No 56
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.56 E-value=5e-14 Score=120.94 Aligned_cols=105 Identities=22% Similarity=0.236 Sum_probs=59.6
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 90 (253)
|..+..+..+|..+...|++++|+..|.+++..+|+++.++.++|.++...|++++|+..+.+++.++|++..++..+|.
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 143 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN 143 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
++..+|++++|+..|.++++.+|++
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p~~ 168 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQPNF 168 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCC
Confidence 5555555555555555555555554
No 57
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=5.2e-15 Score=104.22 Aligned_cols=94 Identities=26% Similarity=0.467 Sum_probs=88.6
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc------HHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL------VKAQF 86 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------~~a~~ 86 (253)
.+..++.+|..++..|+|++|+..|.+++..+|.++.++.++|.++..+|++++|+.++++++.++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhCCHHHHHHHHH
Q psy11461 87 FLGQALHEINHYDEAVKHLQ 106 (253)
Q Consensus 87 ~lg~~~~~~~~~~~A~~~~~ 106 (253)
.+|.++..+|+++.|+..+.
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 99999999998877766554
No 58
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2e-13 Score=109.73 Aligned_cols=106 Identities=16% Similarity=0.240 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhhCHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAII--------------------------KNPVIPSYFTNRALCYLKLKQYVHC 67 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~--------------------------~~p~~~~~~~~~a~~~~~~~~~~~A 67 (253)
+..+..+|..+...|++++|+..|.+++. .+|.++.++.++|.++...|++++|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 78999999999999999999999999999 6677788999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461 68 CDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY 119 (253)
Q Consensus 68 ~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 119 (253)
+..+++++.++|.+..+++.+|.++...|++++|+..|.++++++|++...+
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 210 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 210 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999875443
No 59
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.55 E-value=2e-14 Score=104.86 Aligned_cols=109 Identities=15% Similarity=0.170 Sum_probs=86.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461 39 RAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN 118 (253)
Q Consensus 39 ~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 118 (253)
++..++|..+..+.++|.+|++.|+|++|+..|+++++++|.++.+++++|.++..+|++++|+..|+++++++|++...
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 44557899999999999999999999999999999999999999999999999999999999999999999999998665
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 119 YGDDIACQLRIAKKKRWAETEEKRIAQEI 147 (253)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (253)
+...............+....++.+..+|
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 55444444444444443333333443333
No 60
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.55 E-value=1.2e-13 Score=118.46 Aligned_cols=106 Identities=27% Similarity=0.323 Sum_probs=58.5
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 90 (253)
|.....+..+|..+...|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+++++.++|++..+++.+|.
T Consensus 132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 211 (388)
T 1w3b_A 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 44445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
++...|++++|+..|.+++.++|++.
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~p~~~ 237 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLSPNHA 237 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCCH
Confidence 55555555555555555555555443
No 61
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.55 E-value=1.5e-14 Score=128.66 Aligned_cols=108 Identities=26% Similarity=0.449 Sum_probs=102.8
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 90 (253)
+..+..++.+|..++..|+|++|+..|++++..+|.++.++.++|.+|..+|++++|+.+++++++++|++..+++++|.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSREQNLN 118 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p~~~~~ 118 (253)
++..+|++++|+..|+++++++|++...
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~~~~~ 110 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPHDKDA 110 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999999999987543
No 62
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.55 E-value=3.9e-13 Score=109.44 Aligned_cols=108 Identities=16% Similarity=0.211 Sum_probs=99.0
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------hhCHHHHHHHHHHHHh
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLK--------LKQYVHCCDDCRKALE 76 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~--------~~~~~~A~~~~~~al~ 76 (253)
+.++..+.+++.+|.+++..|+|++|+..|.+++..+|.+ +.+++++|.++.. +|++++|+..+++++.
T Consensus 46 p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 46 RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 3444458999999999999999999999999999998854 6789999999999 9999999999999999
Q ss_pred hCCCcHHHH-----------------HHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 77 LEPSLVKAQ-----------------FFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 77 l~p~~~~a~-----------------~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.+|++..+. +.+|.++...|++++|+..|+++++..|++
T Consensus 126 ~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 181 (261)
T 3qky_A 126 RYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT 181 (261)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 999986665 889999999999999999999999999986
No 63
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.54 E-value=1.1e-13 Score=105.42 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=102.9
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
.....+..+..+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+.+++.++|.+..+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 82 (186)
T 3as5_A 3 NDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVL 82 (186)
T ss_dssp -CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
|.++...|++++|+..+.+++...|.+..
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 111 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAEANPINFN 111 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcHhHH
Confidence 99999999999999999999999988643
No 64
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=1.8e-13 Score=109.20 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=103.1
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
.|..+..+..+|..+...|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+.+++.++|.+..+++.+|
T Consensus 87 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 166 (243)
T 2q7f_A 87 DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG 166 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
.++...|++++|+..|.+++..+|++..
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 194 (243)
T 2q7f_A 167 MCLANEGMLDEALSQFAAVTEQDPGHAD 194 (243)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 9999999999999999999999988643
No 65
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.54 E-value=1.1e-14 Score=135.05 Aligned_cols=140 Identities=11% Similarity=-0.045 Sum_probs=116.9
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
..+|..+..++.+|..++..|+|++|+..|++++..+|+++.+++++|.++..+|++++|+..|+++++++|++..++++
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 506 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA 506 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 34577888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 88 LGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIE 148 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (253)
+|.++..+|++++ +..|++|++++|++...+...........+...+....++.+...|.
T Consensus 507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 507 LAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred HHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence 9999999999999 99999999999998665555554444444444444444443333333
No 66
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=2.5e-13 Score=106.82 Aligned_cols=102 Identities=20% Similarity=0.185 Sum_probs=97.2
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
..|..+..+..+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+.+++.++|.+..+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-CCHHHHHHHHHHHHh
Q psy11461 89 GQALHEI-NHYDEAVKHLQRAYD 110 (253)
Q Consensus 89 g~~~~~~-~~~~~A~~~~~~al~ 110 (253)
|.++... |++++|+..++++++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHc
Confidence 9999999 999999999999999
No 67
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=5.3e-13 Score=104.96 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=103.2
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-hCHHHHHHHHHHHHh--hCCCcHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKL-KQYVHCCDDCRKALE--LEPSLVKAQF 86 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~--l~p~~~~a~~ 86 (253)
.|..+..+..+|..+...|++++|+..|.+++..+|.++.++.++|.++... |++++|+..+++++. .+|.+..+++
T Consensus 38 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 117 (225)
T 2vq2_A 38 DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANL 117 (225)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHH
T ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHH
Confidence 4566889999999999999999999999999999999999999999999999 999999999999999 7778899999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461 87 FLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120 (253)
Q Consensus 87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 120 (253)
.+|.++...|++++|+..|.++++..|.+...+.
T Consensus 118 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 151 (225)
T 2vq2_A 118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK 151 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH
Confidence 9999999999999999999999999998754433
No 68
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.54 E-value=1e-13 Score=117.93 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=102.1
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA 91 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 91 (253)
..+..++.+|..++..|++++|+..|++++..+|.++.++.++|.++..+|++++|+..+++++.++|++..+++.+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461 92 LHEINHYDEAVKHLQRAYDLSREQNLNY 119 (253)
Q Consensus 92 ~~~~~~~~~A~~~~~~al~l~p~~~~~~ 119 (253)
+..+|++++|+..|+++++++|++....
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~ 170 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLV 170 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHH
Confidence 9999999999999999999999875443
No 69
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.53 E-value=1e-13 Score=109.05 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=95.7
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA 91 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 91 (253)
..+..++.+|..++..|+|++|+..|.+++ +| ++.++.++|.+|..+|++++|+..+.+++.++|++..+++.+|.+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 356678999999999999999999999996 33 789999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 92 LHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 92 ~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
+..+|++++|+..|++++++.|.+.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHcccHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999998764
No 70
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.53 E-value=2.8e-13 Score=118.03 Aligned_cols=113 Identities=16% Similarity=0.229 Sum_probs=103.9
Q ss_pred CCCCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH
Q psy11461 4 SHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK 83 (253)
Q Consensus 4 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 83 (253)
.+....+|.++..++.+|..++..|+|++|+..|++++..+|.++.++.++|.++..+|++++|+..+++++.++|++..
T Consensus 16 ~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 95 (450)
T 2y4t_A 16 ENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA 95 (450)
T ss_dssp -------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 84 AQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 84 a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
+++.+|.++..+|++++|+..|+++++++|++.
T Consensus 96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 128 (450)
T 2y4t_A 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN 128 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 999999999999999999999999999999864
No 71
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.53 E-value=2.8e-13 Score=113.85 Aligned_cols=105 Identities=17% Similarity=0.237 Sum_probs=99.3
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL 92 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 92 (253)
++..++.+|..++..|+|++|+..|.+++..+|.++.++.++|.++..+|++++|+..+++++.++|++..+++.+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhhch---hccc
Q psy11461 93 HEINHYDEAVKHLQRAYDLSR---EQNL 117 (253)
Q Consensus 93 ~~~~~~~~A~~~~~~al~l~p---~~~~ 117 (253)
...|++++|+..|+++++++| ++..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 109 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKE 109 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHH
Confidence 999999999999999999999 6543
No 72
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.53 E-value=2.9e-13 Score=115.13 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=88.3
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC---------
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS--------- 80 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--------- 80 (253)
.|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.+|..+|++++|+..+++++.++|+
T Consensus 95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 174 (365)
T 4eqf_A 95 DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK 174 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----
T ss_pred CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc
Confidence 46778899999999999999999999999999999999999999999999999999999988888887665
Q ss_pred -------------------------------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461 81 -------------------------------------LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN 118 (253)
Q Consensus 81 -------------------------------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 118 (253)
++.+++.+|.++..+|++++|+..|+++++++|++...
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 249 (365)
T 4eqf_A 175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL 249 (365)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 45556666666666666666666666666666665433
No 73
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.52 E-value=3.5e-13 Score=96.95 Aligned_cols=105 Identities=30% Similarity=0.464 Sum_probs=100.6
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
.|.....+..+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+.+++...|.+..+++.+|
T Consensus 31 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 110 (136)
T 2fo7_A 31 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 110 (136)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
.++...|++++|+..+.+++.++|.
T Consensus 111 ~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 111 NAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999886
No 74
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.52 E-value=3.2e-13 Score=114.52 Aligned_cols=103 Identities=21% Similarity=0.331 Sum_probs=94.7
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL 92 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 92 (253)
.+..+..+|..+...|++++|+..|.+++..+|.++.++.++|.++..+|++++|+..+++++.++|++..+++.+|.++
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 67888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhhchhc
Q psy11461 93 HEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 93 ~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
..+|++++|+..|++++++.|++
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999998876
No 75
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.52 E-value=1.1e-12 Score=114.18 Aligned_cols=104 Identities=11% Similarity=0.165 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHhhCHHHHHHHHHHHHhhCCC
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNR------------ALCYLKLKQYVHCCDDCRKALELEPS 80 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~al~l~p~ 80 (253)
.+..+..+|..+...|++++|+..|.+++..+|.+..++..+ |.++...|++++|+..+++++.++|+
T Consensus 210 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~ 289 (450)
T 2y4t_A 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 289 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 344455555555555555555555555555555555444333 55555555555555555555555555
Q ss_pred cH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 81 LV----KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 81 ~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
++ .++..+|.++...|++++|+..++++++++|++.
T Consensus 290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 329 (450)
T 2y4t_A 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV 329 (450)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 42 2444555555555555555555555555555443
No 76
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.51 E-value=7e-14 Score=104.83 Aligned_cols=108 Identities=9% Similarity=-0.030 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy11461 31 EEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYD 110 (253)
Q Consensus 31 ~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 110 (253)
-.+-..|.+++..+|.++..++++|.++...|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+..|++++.
T Consensus 4 ~~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 4 GSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp --CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34445688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhcccchHHHHHHHHHHHHHHHHHHH
Q psy11461 111 LSREQNLNYGDDIACQLRIAKKKRWAET 138 (253)
Q Consensus 111 l~p~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (253)
++|+++..+...........+...+...
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~ 111 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESG 111 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 9999876655544444444444333333
No 77
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.51 E-value=2.9e-13 Score=108.19 Aligned_cols=105 Identities=10% Similarity=0.091 Sum_probs=97.1
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH---HHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP---SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK---AQF 86 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~---a~~ 86 (253)
.+..++.+|..++..|+|++|+..|.+++..+|.++ .+++++|.+|..+|+|++|+..|++++.++|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 467899999999999999999999999999999864 68999999999999999999999999999999864 899
Q ss_pred HHHHHHHH------------------hCCHHHHHHHHHHHHhhchhccc
Q psy11461 87 FLGQALHE------------------INHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 87 ~lg~~~~~------------------~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
.+|.++.. .|++++|+..|+++++..|++..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 131 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY 131 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh
Confidence 99999987 57899999999999999999854
No 78
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.51 E-value=3.9e-14 Score=131.32 Aligned_cols=112 Identities=13% Similarity=-0.052 Sum_probs=106.0
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
+|.++.+++.+|..++..|+|++|+..|++++.++|+++.++.++|.++..+|++++ +..|++|++++|++..+++++|
T Consensus 463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg 541 (681)
T 2pzi_A 463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLA 541 (681)
T ss_dssp HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence 577899999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhcccchHHH
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQNLNYGDD 122 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 122 (253)
.++..+|++++|+..|+++++++|++...+...
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 574 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPTSRHFTTARLTS 574 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhhcccCcccHHHHHHH
Confidence 999999999999999999999999975544433
No 79
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=5.4e-13 Score=107.37 Aligned_cols=136 Identities=19% Similarity=0.146 Sum_probs=109.7
Q ss_pred CCccc-HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 9 TNNLS-DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 9 ~~~~~-a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
.+|.. +..++.+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+.+++.++|.+..+++.
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 34554 88899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHh--hchhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 88 LGQALHEINHYDEAVKHLQRAYD--LSREQNLNYGDDIACQLRIAKKKRWAETEEKRIA 144 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (253)
+|.++...|++++|+..|.+++. ..|.+...+....................++.+.
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999 6666544444333333333333334333333333
No 80
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.50 E-value=8.2e-13 Score=111.98 Aligned_cols=107 Identities=15% Similarity=0.112 Sum_probs=101.9
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL 92 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 92 (253)
.+..++.+|..++..|++++|+..|.+++..+|.++.++.++|.++..+|++++|+..+++++.++|++..+++.+|.++
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 142 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461 93 HEINHYDEAVKHLQRAYDLSREQNLNY 119 (253)
Q Consensus 93 ~~~~~~~~A~~~~~~al~l~p~~~~~~ 119 (253)
...|++++|+..|.+++.+.|.+....
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~ 169 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAYAHLV 169 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGC
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 999999999999999999999875543
No 81
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1e-12 Score=116.03 Aligned_cols=111 Identities=23% Similarity=0.361 Sum_probs=103.2
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA 91 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 91 (253)
..+..++..|+.++..|+|++|+..|++++..+| ++.++.++|.|+..+|++++|+..+++++.++|++..+++.+|.+
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999 699999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhhchhcccchHHHH
Q psy11461 92 LHEINHYDEAVKHLQRAYDLSREQNLNYGDDI 123 (253)
Q Consensus 92 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 123 (253)
+..+|++++|+..|.+++.++|.+.......+
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 99999999999999999999987654444333
No 82
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.49 E-value=9.9e-13 Score=93.60 Aligned_cols=85 Identities=13% Similarity=0.128 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 32 EAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 32 ~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
.|+..|.+++..+|.++.+++++|.+|...|++++|+..+++++.++|++..+++.+|.++..+|++++|+..|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcc
Q psy11461 112 SREQN 116 (253)
Q Consensus 112 ~p~~~ 116 (253)
.|...
T Consensus 83 ~~~~~ 87 (115)
T 2kat_A 83 AQSRG 87 (115)
T ss_dssp HHHHT
T ss_pred ccccc
Confidence 98753
No 83
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.49 E-value=8.1e-13 Score=109.95 Aligned_cols=108 Identities=11% Similarity=0.069 Sum_probs=75.3
Q ss_pred CcccHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLR-QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g-~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
.|..+..+..+|..++..| ++++|+.+|.+++..+|.++.++.++|.++...|++++|+..+++++.++|++..+++.+
T Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 165 (330)
T 3hym_B 86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165 (330)
T ss_dssp CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3455666677777777777 677777777777777777777777777777777777777777777777777766777777
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
|.++...|++++|+..++++++++|.+..
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 194 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIAPEDPF 194 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCChH
Confidence 77777777777777777777777666543
No 84
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=9e-13 Score=106.04 Aligned_cols=133 Identities=12% Similarity=0.010 Sum_probs=111.8
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh--hCCCcHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE--LEPSLVKAQFF 87 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~p~~~~a~~~ 87 (253)
.|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+.+++. .+|.+..+++.
T Consensus 67 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 146 (252)
T 2ho1_A 67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFEN 146 (252)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHH
Confidence 4667889999999999999999999999999999999999999999999999999999999999999 88999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 88 LGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKR 142 (253)
Q Consensus 88 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (253)
+|.++...|++++|+..|.+++++.|.+...+...............+....++.
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999987554444444444443333443333333
No 85
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.48 E-value=6.6e-13 Score=110.35 Aligned_cols=106 Identities=19% Similarity=0.227 Sum_probs=94.1
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
.|..+..+..+|..+...|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+++++.++|++..+++.+|
T Consensus 168 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 247 (327)
T 3cv0_A 168 NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247 (327)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.++..+|++++|+..|++++.+.|.+
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999988873
No 86
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.48 E-value=9e-13 Score=89.19 Aligned_cols=87 Identities=29% Similarity=0.402 Sum_probs=81.8
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
.+..+..++.+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+++++.++|++..++..+|
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhC
Q psy11461 90 QALHEIN 96 (253)
Q Consensus 90 ~~~~~~~ 96 (253)
.++..+|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9988765
No 87
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.47 E-value=7.8e-13 Score=105.66 Aligned_cols=108 Identities=16% Similarity=0.103 Sum_probs=97.8
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------hhCHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS---YFTNRALCYLK------------------LKQYVH 66 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~---~~~~~a~~~~~------------------~~~~~~ 66 (253)
+.++....+++.+|.+++..|+|++|+..|.+++..+|+++. +++.+|.++.. +|++++
T Consensus 35 p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (225)
T 2yhc_A 35 PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARA 114 (225)
T ss_dssp TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHH
Confidence 445556789999999999999999999999999999999864 78999999987 579999
Q ss_pred HHHHHHHHHhhCCCcHHHH-----------------HHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 67 CCDDCRKALELEPSLVKAQ-----------------FFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 67 A~~~~~~al~l~p~~~~a~-----------------~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
|+..+++++..+|++..+. +.+|.++...|++.+|+..|+++++..|++
T Consensus 115 A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~ 180 (225)
T 2yhc_A 115 AFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDT 180 (225)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCC
Confidence 9999999999999987554 678999999999999999999999999986
No 88
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.46 E-value=1.4e-12 Score=108.51 Aligned_cols=106 Identities=12% Similarity=0.005 Sum_probs=101.3
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
..|..+..+..+|..+...|++++|+..|.+++...|.+...+..+|.++...|++++|+..+++++.++|++..+++.+
T Consensus 120 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 199 (330)
T 3hym_B 120 LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV 199 (330)
T ss_dssp TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 35667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
|.++...|++++|+..+++++++.|.
T Consensus 200 ~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 200 GVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999754
No 89
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.45 E-value=1.1e-12 Score=97.22 Aligned_cols=102 Identities=7% Similarity=-0.026 Sum_probs=85.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 35 NCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 35 ~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
..|.+++..+|.++..++++|.+++..|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHH
Q psy11461 115 QNLNYGDDIACQLRIAKKKRWA 136 (253)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~ 136 (253)
++..+.................
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~ 106 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAE 106 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHH
Confidence 8765554444444444333333
No 90
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=3.2e-13 Score=109.82 Aligned_cols=106 Identities=10% Similarity=0.069 Sum_probs=68.4
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI----PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 86 (253)
|..+..+..+|..++..|++++|+..|.+++. .|.+ +.++.++|.++..+|++++|+..+.+++.++|.+..++.
T Consensus 34 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 112 (272)
T 3u4t_A 34 YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYG 112 (272)
T ss_dssp CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHH
Confidence 34445566666666666666666666666666 3332 233666666666666666666666666666666666666
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 87 FLGQALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 87 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
.+|.++..+|++++|+..|+++++++|.+..
T Consensus 113 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 143 (272)
T 3u4t_A 113 QIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK 143 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHGGGCCSSCCCHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHhhcCCCcHH
Confidence 6666666666776676666666666665543
No 91
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.45 E-value=6.5e-13 Score=110.30 Aligned_cols=125 Identities=7% Similarity=-0.082 Sum_probs=100.6
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 90 (253)
|..+..+..+|..+...|++++|+..|++++..+|+++.++.++|.++..+|++++|+..+++++..+|++...+...+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 56678899999999999999999999999999999999999999999999999999999988888888876666677777
Q ss_pred HHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHHH
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRW 135 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~ 135 (253)
.+...++.++|+..|++++..+|++...............+...+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A 238 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEA 238 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHH
Confidence 777777777788888888888887755444444433333333333
No 92
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=2.1e-13 Score=110.90 Aligned_cols=114 Identities=20% Similarity=0.240 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc----HHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL----VKAQFFLG 89 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~lg 89 (253)
+..++..|..++..|+|++|+..|.+++..+|.++.++.++|.++..+|++++|+..+.+++. .|.+ ..+++.+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999 4443 45699999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHH
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLR 128 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 128 (253)
.++..+|++++|+..|.++++++|.+...+.........
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 120 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 999999999999999999999999986554444433333
No 93
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.45 E-value=1.6e-12 Score=109.12 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=96.6
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC---CcHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP---SLVKAQF 86 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p---~~~~a~~ 86 (253)
.|..+..+..+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+++++.++| ++..++.
T Consensus 33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 112 (359)
T 3ieg_A 33 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES 112 (359)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHH
Confidence 4667888999999999999999999999999999999999999999999999999999999999999999 8888877
Q ss_pred HH------------HHHHHHhCCHHHHHHHHHHHHhhchhcccchHH
Q psy11461 87 FL------------GQALHEINHYDEAVKHLQRAYDLSREQNLNYGD 121 (253)
Q Consensus 87 ~l------------g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 121 (253)
.+ |.++...|++++|+..+.++++..|.+...+..
T Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 77 688888888888888888888888877544433
No 94
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.44 E-value=3.7e-12 Score=106.02 Aligned_cols=110 Identities=8% Similarity=-0.138 Sum_probs=66.2
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRA--LCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a--~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
|.....+..+|..+...|++++|+..|++++..+|++.......+ .++...|++++|+..+++++..+|+++.+++.+
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l 206 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ 206 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 344556666666666666666666666666666666543322222 112223566666666666666666666666667
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 120 (253)
|.++..+|++++|+..|+++++++|+++..+.
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 77777777777777777777777666644433
No 95
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.44 E-value=2.7e-12 Score=96.32 Aligned_cols=105 Identities=14% Similarity=0.154 Sum_probs=96.4
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
.|..+..+..+|..++..|+|++|+..|.+++..+|.++.++.++|.++..+|++++|+..+.+++.++|.+..++..++
T Consensus 43 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 122 (166)
T 1a17_A 43 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 122 (166)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999886655
Q ss_pred HH--HHHhCCHHHHHHHHHHHHhhchh
Q psy11461 90 QA--LHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 90 ~~--~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
.+ +...|++++|+..+.++..+.+.
T Consensus 123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 123 ECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 55 88889999999999998877544
No 96
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.43 E-value=2.8e-12 Score=106.50 Aligned_cols=107 Identities=12% Similarity=0.047 Sum_probs=102.0
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA 91 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 91 (253)
..+..++.+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+++++.++|.+..+++.+|.+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461 92 LHEINHYDEAVKHLQRAYDLSREQNLN 118 (253)
Q Consensus 92 ~~~~~~~~~A~~~~~~al~l~p~~~~~ 118 (253)
+...|++++|+..+.++++.+|.+...
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~ 125 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQL 125 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHH
Confidence 999999999999999999999987543
No 97
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.43 E-value=4.9e-13 Score=102.36 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=87.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHhCCH
Q psy11461 20 EGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA-LHEINHY 98 (253)
Q Consensus 20 ~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~-~~~~~~~ 98 (253)
.+..++..|++++|+..|.+++..+|.++.++..+|.+|...|++++|+..+.+++.++|++..+++.+|.+ +...|++
T Consensus 16 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 16 PLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp TTCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCc
Confidence 344567789999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred --HHHHHHHHHHHhhchhcccc
Q psy11461 99 --DEAVKHLQRAYDLSREQNLN 118 (253)
Q Consensus 99 --~~A~~~~~~al~l~p~~~~~ 118 (253)
++|+..|.++++++|++...
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~ 117 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITA 117 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHH
Confidence 99999999999999987443
No 98
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.42 E-value=3.8e-12 Score=113.25 Aligned_cols=108 Identities=17% Similarity=0.131 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH 93 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 93 (253)
+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+++++.++|++..+++.+|.++.
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 56666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhCCHHHHHHHHHHHHhhchhcccchHH
Q psy11461 94 EINHYDEAVKHLQRAYDLSREQNLNYGD 121 (253)
Q Consensus 94 ~~~~~~~A~~~~~~al~l~p~~~~~~~~ 121 (253)
..|++++|+..|.++++.+|++...+..
T Consensus 356 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 383 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKFPTLPEVPTF 383 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 7777777777777777777766544333
No 99
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.42 E-value=9e-12 Score=101.10 Aligned_cols=103 Identities=13% Similarity=0.070 Sum_probs=85.7
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
.|..+..+..+|..++..|++++|+.+|.+++..+|.++.++.++|.++..+|++++|+..+++++.++|++......++
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (275)
T 1xnf_A 73 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152 (275)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999875554444
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhch
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p 113 (253)
.+ ...|++++|+..+.+++...|
T Consensus 153 ~~-~~~~~~~~A~~~~~~~~~~~~ 175 (275)
T 1xnf_A 153 LA-EQKLDEKQAKEVLKQHFEKSD 175 (275)
T ss_dssp HH-HHHHCHHHHHHHHHHHHHHSC
T ss_pred HH-HHhcCHHHHHHHHHHHHhcCC
Confidence 33 444666666666655555433
No 100
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.42 E-value=6.4e-12 Score=111.79 Aligned_cols=109 Identities=20% Similarity=0.208 Sum_probs=104.6
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
.|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++..+|++++|+..+.+++.++|++..+++.+|
T Consensus 306 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 385 (537)
T 3fp2_A 306 NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA 385 (537)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhcccc
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQNLN 118 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 118 (253)
.++...|++++|+..|+++++++|++...
T Consensus 386 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 99999999999999999999999987543
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.42 E-value=3.3e-12 Score=115.64 Aligned_cols=110 Identities=12% Similarity=-0.043 Sum_probs=105.4
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
.+|..+..+..+|..+...|++++|+.+|.+++..+|.++.++.++|.+|..+|++++|+..++++++++|++..+++.+
T Consensus 52 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 131 (568)
T 2vsy_A 52 LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL 131 (568)
T ss_dssp TSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh---CCHHHHHHHHHHHHhhchhcccc
Q psy11461 89 GQALHEI---NHYDEAVKHLQRAYDLSREQNLN 118 (253)
Q Consensus 89 g~~~~~~---~~~~~A~~~~~~al~l~p~~~~~ 118 (253)
|.++..+ |++++|+..++++++.+|++...
T Consensus 132 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 164 (568)
T 2vsy_A 132 LNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEP 164 (568)
T ss_dssp HHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCH
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCcccCh
Confidence 9999999 99999999999999999987543
No 102
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.41 E-value=6.8e-13 Score=91.73 Aligned_cols=93 Identities=14% Similarity=0.134 Sum_probs=85.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy11461 17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS-YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEI 95 (253)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~ 95 (253)
.+..|..++..|+|++|+..|.+++..+|.++. ++.++|.+|..+|++++|+..|++++.++|++..++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 467899999999999999999999999999999 99999999999999999999999999999999988854
Q ss_pred CCHHHHHHHHHHHHhhchhccc
Q psy11461 96 NHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 96 ~~~~~A~~~~~~al~l~p~~~~ 117 (253)
+.+.+++..|.++...+|++..
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHHHhccCccccc
Confidence 6678899999999999988643
No 103
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.41 E-value=3.2e-12 Score=103.66 Aligned_cols=103 Identities=21% Similarity=0.258 Sum_probs=95.9
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh---
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL--- 77 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--- 77 (253)
.+|..+..+..+|..++..|++++|+.+|.+++.. +|..+.++.++|.+|..+|++++|+..+.+++.+
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 44778899999999999999999999999999988 3666789999999999999999999999999998
Q ss_pred -----CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 78 -----EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 78 -----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
+|....+++.+|.++..+|++++|+..|++++++
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5778899999999999999999999999999998
No 104
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.41 E-value=3.6e-12 Score=106.11 Aligned_cols=95 Identities=13% Similarity=0.095 Sum_probs=89.1
Q ss_pred HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHH-
Q psy11461 22 NRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDE- 100 (253)
Q Consensus 22 ~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~- 100 (253)
+.+...|++++|+.+|++++..+|.++.+++++|.++.++|++++|+..+++++.++|+++.+++++|.++..+|++.+
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 4445669999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred HHHHHHHHHhhchhcc
Q psy11461 101 AVKHLQRAYDLSREQN 116 (253)
Q Consensus 101 A~~~~~~al~l~p~~~ 116 (253)
+..+++++++++|+++
T Consensus 254 a~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 254 TNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhCCCCh
Confidence 5789999999999983
No 105
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.39 E-value=4.7e-12 Score=107.53 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH 93 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 93 (253)
+..+.++|.+++..|+|++|+.+|.+++.++|.++.+++++|.+|..+|++++|+.+|++++.++|++..++..+|.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCHHHH-HHHHHHHHhh
Q psy11461 94 EINHYDEA-VKHLQRAYDL 111 (253)
Q Consensus 94 ~~~~~~~A-~~~~~~al~l 111 (253)
.+|++++| ...|.+.+..
T Consensus 276 ~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 99999998 4567766654
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.39 E-value=3.9e-12 Score=97.58 Aligned_cols=104 Identities=13% Similarity=0.051 Sum_probs=56.6
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYL-KLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
|.++..++.+|..+...|++++|+..|.+++..+| ++.++..++.+.. ..+...+|+..+++++.++|+++.+++.+|
T Consensus 37 P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la 115 (176)
T 2r5s_A 37 QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELA 115 (176)
T ss_dssp HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34444444444444444444444444444444444 4433333332211 112222345555556666677777777777
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.++...|++++|+..|+++++++|+.
T Consensus 116 ~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 116 VQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHcccHHHHHHHHHHHHHhCccc
Confidence 77777777777777777777777654
No 107
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.38 E-value=5.3e-12 Score=87.90 Aligned_cols=74 Identities=19% Similarity=0.277 Sum_probs=63.5
Q ss_pred hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 43 KNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 43 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
.+|+++.+++++|.+|..+|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|++++++.|...
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 36888889999999999999999999999999999999999999999999999999999999999998887653
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.38 E-value=4e-12 Score=105.50 Aligned_cols=107 Identities=11% Similarity=-0.001 Sum_probs=101.8
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
.+|.++.++..+|..+...|++++|+..|.+++..+|+......+.+..+...++.++|+..+++++.++|++..+++.+
T Consensus 146 ~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~l 225 (287)
T 3qou_A 146 LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQL 225 (287)
T ss_dssp HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHH
Confidence 46788999999999999999999999999999999998777888888889999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
|.++...|++++|+..|.++++.+|++
T Consensus 226 a~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 226 ALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999986
No 109
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.38 E-value=1.6e-11 Score=110.75 Aligned_cols=120 Identities=14% Similarity=0.096 Sum_probs=91.8
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
.|..+..+..+|..+.+.|++++|+..|.+++..+|.++.+|..+|.+|.+.|++++|+..+++++.++|++..++..+|
T Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 448 (597)
T 2xpi_A 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448 (597)
T ss_dssp CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 35567777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHH
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRI 129 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 129 (253)
.++...|++++|+..|++++++.|.+...+...+....+.
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK 488 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 8888888888888888888888777654444333333333
No 110
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.38 E-value=1.7e-12 Score=107.93 Aligned_cols=105 Identities=11% Similarity=-0.059 Sum_probs=81.8
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHh-hCHHHHHHHHHHHHhhCCCc---
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI------PSYFTNRALCYLKL-KQYVHCCDDCRKALELEPSL--- 81 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~al~l~p~~--- 81 (253)
..+..+.++|.++...|++++|+.+|.+|+.+.|.. +.++.++|.+|... |++++|+.+|++|+.+.|..
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 346778888888888888888888888888876643 45778888888885 88888888888888877653
Q ss_pred ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 82 ---VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 82 ---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
..++..+|.++..+|++++|+..|++++++.|++.
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 192 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR 192 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 45677888888888888888888888888877764
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.37 E-value=4.4e-13 Score=102.92 Aligned_cols=122 Identities=9% Similarity=-0.016 Sum_probs=98.0
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQA 91 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 91 (253)
.....++.+|..++..|++++|+..|++++..+|+++.++.++|.++...|++++|+..+++++.++| ++..+..++.+
T Consensus 4 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~ 82 (176)
T 2r5s_A 4 SPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKL 82 (176)
T ss_dssp --CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHH
Confidence 33456889999999999999999999999999999999999999999999999999999999999999 88777666655
Q ss_pred HH-HhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHHHHHHH
Q psy11461 92 LH-EINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKR 134 (253)
Q Consensus 92 ~~-~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~ 134 (253)
.. ..+...+|+..|+++++++|++...+...............
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 126 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEE 126 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHH
Confidence 33 33444568999999999999986554444444333333333
No 112
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=1.5e-11 Score=102.82 Aligned_cols=110 Identities=13% Similarity=-0.005 Sum_probs=100.5
Q ss_pred CcccHHHHHHHHHHHHh-------ccCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFG-------LRQY-------EEAINCYTRAII-KNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~-------~g~~-------~~A~~~y~~ai~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (253)
.|..+..|+.+|..+.. .|++ ++|+..|.+|+. ++|+++.+|.++|.++...|++++|...|+++
T Consensus 46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 125 (308)
T 2ond_A 46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 125 (308)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 47788999999998874 5885 999999999999 79999999999999999999999999999999
Q ss_pred HhhCCCcHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461 75 LELEPSLVK-AQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY 119 (253)
Q Consensus 75 l~l~p~~~~-a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 119 (253)
++++|.+.. +|..+|.++...|++++|+..|.+|++.+|.....+
T Consensus 126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 171 (308)
T 2ond_A 126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 171 (308)
T ss_dssp HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH
Confidence 999999987 999999999999999999999999999998764433
No 113
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.2e-11 Score=89.18 Aligned_cols=82 Identities=11% Similarity=0.103 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHH
Q psy11461 45 PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIA 124 (253)
Q Consensus 45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 124 (253)
|..+..+.++|.+++..|+|++|+..|.+++.++|+++.+++.+|.++..+|++++|+..|+++++++|++...+.....
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999998554444333
Q ss_pred HH
Q psy11461 125 CQ 126 (253)
Q Consensus 125 ~~ 126 (253)
..
T Consensus 81 ~~ 82 (126)
T 3upv_A 81 AQ 82 (126)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 114
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.36 E-value=2.4e-11 Score=88.39 Aligned_cols=74 Identities=20% Similarity=0.231 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461 47 IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120 (253)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 120 (253)
.+.++.++|.++++.|+|++|+..|.+|++++|+++.+++++|.++..+|++++|+..|.++++++|++...+.
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 80 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK 80 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH
Confidence 35678899999999999999999999999999999999999999999999999999999999999998765443
No 115
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.36 E-value=1.5e-11 Score=111.08 Aligned_cols=105 Identities=13% Similarity=0.024 Sum_probs=99.0
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
.|.....+..+|..+...|++++|+..|.+++...|.++.++..+|.+|.+.|++++|+..+++++.++|.++.++..+|
T Consensus 403 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 482 (597)
T 2xpi_A 403 DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG 482 (597)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 90 QALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 90 ~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
.++...|++++|+..|++++++.|+
T Consensus 483 ~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 483 VVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999654
No 116
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.35 E-value=6.2e-12 Score=104.45 Aligned_cols=104 Identities=16% Similarity=0.020 Sum_probs=91.0
Q ss_pred cHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH--
Q psy11461 13 SDKELKDEGNRYFGL-RQYEEAINCYTRAIIKNPVI------PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK-- 83 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~-g~~~~A~~~y~~ai~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~-- 83 (253)
.+..+.++|..+... |++++|+.+|.+|+.+.|.. ..++.++|.++..+|++++|+..|++++.+.|++..
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 195 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence 467889999999996 99999999999999998754 567999999999999999999999999999987643
Q ss_pred -----HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 84 -----AQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 84 -----a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
+++.+|.++..+|++++|+.+|+++++++|+..
T Consensus 196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 688999999999999999999999999999864
No 117
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.3e-11 Score=108.97 Aligned_cols=139 Identities=16% Similarity=0.146 Sum_probs=115.1
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
..|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+.+++.++|++..+++.+
T Consensus 299 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 378 (514)
T 2gw1_A 299 LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFF 378 (514)
T ss_dssp TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHH
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhchhccc------chHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDLSREQNL------NYGDDIACQLR---IAKKKRWAETEEKRIAQEI 147 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l~p~~~~------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 147 (253)
|.++...|++++|+..|.+++++.|.+.. .+......... ...........++.+...|
T Consensus 379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999998754 33334444444 4444444444444444333
No 118
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=3.6e-11 Score=100.48 Aligned_cols=110 Identities=9% Similarity=-0.098 Sum_probs=99.4
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS-YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
.|..+..|..+|..+...|++++|+..|++++..+|.++. +|.++|.++...|++++|+..|+++++++|.+..++...
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 174 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 5778899999999999999999999999999999999987 999999999999999999999999999999998887766
Q ss_pred HHHHHH-hCCHHHHHHHHHHHHhhchhcccch
Q psy11461 89 GQALHE-INHYDEAVKHLQRAYDLSREQNLNY 119 (253)
Q Consensus 89 g~~~~~-~~~~~~A~~~~~~al~l~p~~~~~~ 119 (253)
+..... .|++++|...|+++++++|++...+
T Consensus 175 a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 206 (308)
T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV 206 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 655443 7999999999999999999874433
No 119
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.33 E-value=2.1e-11 Score=87.25 Aligned_cols=89 Identities=22% Similarity=0.236 Sum_probs=85.2
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
.|..+..+..+|..++..|++++|+.+|.+++..+|.++.++.++|.++..+|++++|+..+.+++.++|++..+++.+|
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 121 (131)
T 2vyi_A 42 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK 121 (131)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCH
Q psy11461 90 QALHEINHY 98 (253)
Q Consensus 90 ~~~~~~~~~ 98 (253)
.++..+|++
T Consensus 122 ~~~~~~~~~ 130 (131)
T 2vyi_A 122 IAELKLREA 130 (131)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhcC
Confidence 999998875
No 120
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.31 E-value=9.6e-12 Score=100.86 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=99.9
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL-- 77 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-- 77 (253)
...+..+..+..+|..++..|++++|+.+|.+++.. +|....++.++|.++..+|++++|+..+++++.+
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 79 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA 158 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 345778889999999999999999999999999998 4677889999999999999999999999999999
Q ss_pred ------CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 78 ------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 78 ------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+|....++..+|.++..+|++++|+..+.+++++.+..
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 78888999999999999999999999999999987653
No 121
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.31 E-value=2.7e-11 Score=87.20 Aligned_cols=89 Identities=20% Similarity=0.224 Sum_probs=84.7
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
..|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++..+|++++|+..+.+++.++|.+..+++.+
T Consensus 45 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 124 (133)
T 2lni_A 45 RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY 124 (133)
T ss_dssp TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC
Q psy11461 89 GQALHEINH 97 (253)
Q Consensus 89 g~~~~~~~~ 97 (253)
|.++..+|+
T Consensus 125 ~~~~~~~~~ 133 (133)
T 2lni_A 125 QRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhcC
Confidence 999988774
No 122
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.31 E-value=1e-11 Score=88.75 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=75.8
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
+|..+..+..+|.+++..|+|++|+.+|.+++..+|+++.++.++|.++..+|++++|+..+++++.++|+++.......
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999987665443
Q ss_pred HH
Q psy11461 90 QA 91 (253)
Q Consensus 90 ~~ 91 (253)
.+
T Consensus 103 ai 104 (117)
T 3k9i_A 103 AI 104 (117)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 123
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.30 E-value=1.8e-10 Score=83.81 Aligned_cols=88 Identities=11% Similarity=0.058 Sum_probs=75.6
Q ss_pred HhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHH
Q psy11461 42 IKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGD 121 (253)
Q Consensus 42 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 121 (253)
..+|.++..+..+|.+++..|+|++|+..+.+++.++|++..+++.+|.++..+|++++|+..|+++++++|++...+..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999997554444
Q ss_pred HHHHHHHH
Q psy11461 122 DIACQLRI 129 (253)
Q Consensus 122 ~~~~~~~~ 129 (253)
........
T Consensus 83 l~~~~~~~ 90 (137)
T 3q49_B 83 LGQCQLEM 90 (137)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 33333333
No 124
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.30 E-value=5.4e-11 Score=104.36 Aligned_cols=109 Identities=11% Similarity=-0.026 Sum_probs=94.0
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC--
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK---------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE-- 78 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-- 78 (253)
.+..+..+..+|.++...|++++|+++|++|+.+ +|.....|.|+|.+|..+|++++|+.++++++.+.
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3455778889999999999999999999999986 67788899999999999999999999999999873
Q ss_pred ------CCcHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhhchhcccc
Q psy11461 79 ------PSLVKAQFFLGQALHEIN--HYDEAVKHLQRAYDLSREQNLN 118 (253)
Q Consensus 79 ------p~~~~a~~~lg~~~~~~~--~~~~A~~~~~~al~l~p~~~~~ 118 (253)
+..+.++..+|.++...| +|++|+.+|++|++++|+++..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~ 174 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF 174 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHH
Confidence 356788999998887765 6999999999999999998653
No 125
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.30 E-value=2.8e-12 Score=114.04 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=96.8
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
+|..+..+..+|..++..|+|++|+..|++++.++|.++.++.++|.+|..+|++++|+..++++++++|++..++..++
T Consensus 36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 115 (477)
T 1wao_1 36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115 (477)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH--HHHhCCHHHHHHHHH-----------HHHhhchhcc
Q psy11461 90 QA--LHEINHYDEAVKHLQ-----------RAYDLSREQN 116 (253)
Q Consensus 90 ~~--~~~~~~~~~A~~~~~-----------~al~l~p~~~ 116 (253)
.+ +...|++++|++.+. +++.+.|+..
T Consensus 116 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 116 ECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp HHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 99 888999999999999 8888888753
No 126
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.30 E-value=5.5e-11 Score=85.75 Aligned_cols=80 Identities=18% Similarity=0.036 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHHHHHHH
Q psy11461 50 YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRI 129 (253)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 129 (253)
.++.+|.++...|++++|+..+++++.++|++..+|+.+|.++..+|++++|+..|+++++++|++...+..........
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 47889999999999999999999999999999999999999999999999999999999999999865444433333333
No 127
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.29 E-value=1.2e-10 Score=100.25 Aligned_cols=104 Identities=21% Similarity=0.257 Sum_probs=97.1
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhhCHHHHHHHHHHHHhh------CCC
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP----SYFTNRALCYLKLKQYVHCCDDCRKALEL------EPS 80 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~ 80 (253)
+..+..+..+|..++..|+|++|+..|.+++..+|.++ .++.++|.+|..+|++++|+..+++++.+ +|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 56778889999999999999999999999999999987 58999999999999999999999999998 577
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 81 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
...+++.+|.++..+|++++|+..|.+++++.+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 158 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQ 158 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999554
No 128
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.29 E-value=2.6e-11 Score=84.32 Aligned_cols=72 Identities=8% Similarity=0.079 Sum_probs=66.9
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 80 (253)
.+|.++..++.+|..++..|+|++|+..|++++..+|.++.+|.++|.+|..+|++++|+..+++++.+.|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 367889999999999999999999999999999999999999999999999999999999999999998764
No 129
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=6.1e-11 Score=97.64 Aligned_cols=107 Identities=19% Similarity=0.217 Sum_probs=98.3
Q ss_pred CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461 6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77 (253)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (253)
.-+.+|..+..+..+|..++..|++++|+..|.+++.. .|..+.++.++|.++...|++++|+..+.+++.+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34467889999999999999999999999999999995 6677889999999999999999999999999988
Q ss_pred --------CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461 78 --------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 78 --------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 112 (253)
+|....+++.+|.++...|++++|+..|.+++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 141 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 141 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999986
No 130
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.28 E-value=4.4e-11 Score=90.40 Aligned_cols=86 Identities=10% Similarity=0.039 Sum_probs=74.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHH
Q psy11461 44 NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDI 123 (253)
Q Consensus 44 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 123 (253)
++.++..+..+|.+++..|+|++|+..|++++.++|++..+++.+|.++..+|++++|+..|+++++++|++...+....
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999855444433
Q ss_pred HHHHHH
Q psy11461 124 ACQLRI 129 (253)
Q Consensus 124 ~~~~~~ 129 (253)
......
T Consensus 87 ~~~~~~ 92 (164)
T 3sz7_A 87 LARFDM 92 (164)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 333333
No 131
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.28 E-value=1.9e-11 Score=92.29 Aligned_cols=89 Identities=9% Similarity=0.029 Sum_probs=80.1
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcH-HHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV-KAQFFL 88 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~l 88 (253)
.|..+..+.++|.+++..|+|++|+..+.+++.++|.++.+|+++|.+|..+|++++|+.++.+++.++|++. .+...+
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999999999999999999999999998 567677
Q ss_pred HHHHHHhCCH
Q psy11461 89 GQALHEINHY 98 (253)
Q Consensus 89 g~~~~~~~~~ 98 (253)
+.+....+.+
T Consensus 139 ~~~~~~~~~~ 148 (162)
T 3rkv_A 139 KIVTERRAEK 148 (162)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666555433
No 132
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.27 E-value=3.2e-11 Score=94.03 Aligned_cols=97 Identities=9% Similarity=0.061 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH 93 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 93 (253)
...+..+|.+++..|+|++|+.+|.+++..+|.++.+++++|.+|..+|++++|+..+++++.++|++..++..++.++.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHH-HHHHHHHh
Q psy11461 94 EINHYDEAV-KHLQRAYD 110 (253)
Q Consensus 94 ~~~~~~~A~-~~~~~al~ 110 (253)
.+++..++. ..|.+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999888877 45555544
No 133
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.27 E-value=2.3e-11 Score=91.51 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=69.5
Q ss_pred CCcccHHHHHHHHHHHHhccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-----------CHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQY----------EEAINCYTRAIIKNPVIPSYFTNRALCYLKLK-----------QYVHC 67 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~----------~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~-----------~~~~A 67 (253)
.+|.++..|+++|.++...+++ ++|+..|++||.++|+++.+|+++|.+|..+| ++++|
T Consensus 31 l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA 110 (158)
T 1zu2_A 31 SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLA 110 (158)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHH
Confidence 4688999999999999998875 59999999999999999999999999999885 89999
Q ss_pred HHHHHHHHhhCCCcHH
Q psy11461 68 CDDCRKALELEPSLVK 83 (253)
Q Consensus 68 ~~~~~~al~l~p~~~~ 83 (253)
+.+|++|++++|++..
T Consensus 111 ~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 111 TQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhCCCCHH
Confidence 9999999999999853
No 134
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=5.1e-11 Score=98.13 Aligned_cols=103 Identities=23% Similarity=0.300 Sum_probs=94.7
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC--
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE-- 78 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-- 78 (253)
..+..+..+..+|..++..|++++|+.+|.+++.. .|..+.++.++|.++..+|++++|+..+.+++.+.
T Consensus 64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999987 35667899999999999999999999999999884
Q ss_pred ------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 79 ------PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 79 ------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
|....++..+|.++...|++++|+..|++++.+
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 667788999999999999999999999999998
No 135
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.26 E-value=5.5e-10 Score=95.32 Aligned_cols=107 Identities=25% Similarity=0.307 Sum_probs=97.8
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhhCHHHHHHHHHHHHhh------CC
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP----SYFTNRALCYLKLKQYVHCCDDCRKALEL------EP 79 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p 79 (253)
....+..+...|..++..|+|++|+.+|++++...|.++ .++..+|.++...|++++|+..+++++.+ .|
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 355688899999999999999999999999999999984 68999999999999999999999999987 45
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 80 SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 80 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
....+++.+|.++..+|++++|+..+.+++.+.|...
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 121 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 121 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Confidence 5678999999999999999999999999999988753
No 136
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.25 E-value=5.1e-11 Score=102.24 Aligned_cols=106 Identities=16% Similarity=0.193 Sum_probs=90.4
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV-------IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL 81 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (253)
..+..+..+..+|..++..|+++.|+.+|.+|+.+.+. .+.++.++|.+|..+|++++|+..+.+++.+.+..
T Consensus 138 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 217 (383)
T 3ulq_A 138 DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE 217 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Confidence 44557889999999999999999999999999988443 34589999999999999999999999999885533
Q ss_pred ------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 82 ------VKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 82 ------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
..+++++|.++..+|++++|+.+|++++++.+.
T Consensus 218 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 218 KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 258899999999999999999999999996543
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=9.4e-11 Score=106.33 Aligned_cols=113 Identities=9% Similarity=0.020 Sum_probs=106.7
Q ss_pred CCcccHHHHHHHHHHHHhccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CHHHHHHHHHHHHh
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQ----------YEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK--QYVHCCDDCRKALE 76 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~----------~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~ 76 (253)
.+|+...+|..+|.++...|+ +++++.++.+++..+|.+..+|.+|+.++.+++ +|++++.++.++++
T Consensus 58 ~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~ 137 (567)
T 1dce_A 58 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE 137 (567)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh
Confidence 468889999999999999998 999999999999999999999999999999999 77999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhchhcccchHH
Q psy11461 77 LEPSLVKAQFFLGQALHEIN-HYDEAVKHLQRAYDLSREQNLNYGD 121 (253)
Q Consensus 77 l~p~~~~a~~~lg~~~~~~~-~~~~A~~~~~~al~l~p~~~~~~~~ 121 (253)
++|.|..||.+++.++..+| .++++++++.++++.+|.+..++..
T Consensus 138 ~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~ 183 (567)
T 1dce_A 138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183 (567)
T ss_dssp HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHH
Confidence 99999999999999999999 9999999999999999998655443
No 138
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.24 E-value=5e-10 Score=92.60 Aligned_cols=104 Identities=26% Similarity=0.332 Sum_probs=95.4
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHhh------CCCcH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI----PSYFTNRALCYLKLKQYVHCCDDCRKALEL------EPSLV 82 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~~ 82 (253)
....++..|..++..|++++|+..|.+++..+|.+ +.++..+|.++...|++++|+..+.+++.+ .|...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 45678899999999999999999999999999998 468899999999999999999999999987 45567
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
.++..+|.++...|++++|+..+.+++++.+...
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 117 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999988753
No 139
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.24 E-value=3.9e-11 Score=106.08 Aligned_cols=91 Identities=18% Similarity=0.270 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH 93 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 93 (253)
+..+.++|.++++.|+|++|+.+|.+++.++|.++.+++++|.+|..+|++++|+.+|++|++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHH
Q psy11461 94 EINHYDEAVKH 104 (253)
Q Consensus 94 ~~~~~~~A~~~ 104 (253)
.++++++|.+.
T Consensus 397 ~~~~~~~a~~~ 407 (457)
T 1kt0_A 397 KAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 140
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.24 E-value=1.1e-11 Score=105.41 Aligned_cols=102 Identities=19% Similarity=0.162 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH-H
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQAL-H 93 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~-~ 93 (253)
..+.++|.+++..|+|++|+.+|.+++.++|.++.+++++|.+|..+|++++|+.+|++++.++|++..++..++.+. .
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999999984 4
Q ss_pred HhCCHHHHHHHHHHHHhhchhcc
Q psy11461 94 EINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 94 ~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
..+..+.+...|.+++...|++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCC
Confidence 55678889999999999999863
No 141
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.24 E-value=1.7e-10 Score=96.60 Aligned_cols=114 Identities=9% Similarity=-0.017 Sum_probs=104.8
Q ss_pred CCcccHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHh---hCHHHHHHHHHHHHhhCC
Q psy11461 9 TNNLSDKELKDEGNRYFGLR--QYEEAINCYTRAIIKNPVIPSYFTNRALCY----LKL---KQYVHCCDDCRKALELEP 79 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g--~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~al~l~p 79 (253)
-+|....+|..+|.++...| ++++++.++..++..+|.+..+|..|+.++ ... +++.+++..+.+++.++|
T Consensus 62 ~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p 141 (306)
T 3dra_A 62 ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP 141 (306)
T ss_dssp HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT
T ss_pred HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC
Confidence 46888999999999999999 999999999999999999999999999999 667 789999999999999999
Q ss_pred CcHHHHHHHHHHHHHhCCHH--HHHHHHHHHHhhchhcccchHHH
Q psy11461 80 SLVKAQFFLGQALHEINHYD--EAVKHLQRAYDLSREQNLNYGDD 122 (253)
Q Consensus 80 ~~~~a~~~lg~~~~~~~~~~--~A~~~~~~al~l~p~~~~~~~~~ 122 (253)
.|..+|++++.++..+|.++ ++++++.++++.+|.+..++...
T Consensus 142 kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R 186 (306)
T 3dra_A 142 KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHR 186 (306)
T ss_dssp TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999998 99999999999999986655433
No 142
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.24 E-value=9.9e-11 Score=86.64 Aligned_cols=106 Identities=15% Similarity=0.294 Sum_probs=93.7
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc--
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP------SYFTNRALCYLKLKQYVHCCDDCRKALELEPSL-- 81 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-- 81 (253)
.+..+..+..+|..++..|++++|+.+|.+++...+... .++.++|.++..+|++++|+..+.+++.+.+..
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 84 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 84 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 345678899999999999999999999999998865422 589999999999999999999999999886543
Q ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 82 ----VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 82 ----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
..+++.+|.++...|++++|+..+.+++.+.+..
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 122 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 122 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 6689999999999999999999999999987654
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.23 E-value=2.2e-10 Score=88.73 Aligned_cols=105 Identities=8% Similarity=0.036 Sum_probs=93.5
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh---CC--
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL---EP-- 79 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l---~p-- 79 (253)
...+..+..+|..++..|++++|+.+|.+++.. .|..+.++.++|.++..+|++++|+..+.+++.+ .+
T Consensus 23 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 102 (203)
T 3gw4_A 23 ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED 102 (203)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc
Confidence 367889999999999999999999999999984 4456778999999999999999999999999998 33
Q ss_pred --CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 80 --SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 80 --~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
....+++.+|.++..+|++++|+..+.+++.+.+..
T Consensus 103 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 140 (203)
T 3gw4_A 103 PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA 140 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 335679999999999999999999999999987654
No 144
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.23 E-value=4e-10 Score=91.89 Aligned_cols=99 Identities=19% Similarity=0.214 Sum_probs=87.7
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhhCCCcHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK----LKQYVHCCDDCRKALELEPSLVKAQ 85 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~ 85 (253)
+|.++.+++.+|..++..|++++|+.+|.+++. |.++.++.++|.+|.. .+++++|+.++++++.++ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 356788899999999999999999999999988 7788999999999999 999999999999999875 78999
Q ss_pred HHHHHHHHH----hCCHHHHHHHHHHHHhhc
Q psy11461 86 FFLGQALHE----INHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 86 ~~lg~~~~~----~~~~~~A~~~~~~al~l~ 112 (253)
+.+|.++.. .+++++|+..|+++++.+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 108 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK 108 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC
Confidence 999999999 999999999999999874
No 145
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.23 E-value=1.3e-10 Score=87.58 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC-------cHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHhh----
Q psy11461 48 PSYFTNRALCYLKLKQYVHCCDDCRKALELEPS-------LVK-----AQFFLGQALHEINHYDEAVKHLQRAYDL---- 111 (253)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-------~~~-----a~~~lg~~~~~~~~~~~A~~~~~~al~l---- 111 (253)
+..+.++|.++++.|+|++|+..|++|+.++|+ +.. +|+++|.++..+|+|++|+.+|.+|+++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 457889999999999999999999999999999 554 9999999999999999999999999999
Q ss_pred ---chhcccch
Q psy11461 112 ---SREQNLNY 119 (253)
Q Consensus 112 ---~p~~~~~~ 119 (253)
+|++...+
T Consensus 91 ~e~~pd~~~A~ 101 (159)
T 2hr2_A 91 GELNQDEGKLW 101 (159)
T ss_dssp CCTTSTHHHHH
T ss_pred ccCCCchHHHH
Confidence 99875444
No 146
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.22 E-value=2.8e-10 Score=80.54 Aligned_cols=87 Identities=28% Similarity=0.404 Sum_probs=82.3
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
.|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..+++++.++|.+..++..+|
T Consensus 39 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 118 (125)
T 1na0_A 39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhC
Q psy11461 90 QALHEIN 96 (253)
Q Consensus 90 ~~~~~~~ 96 (253)
.++...|
T Consensus 119 ~~~~~~g 125 (125)
T 1na0_A 119 NAKQKQG 125 (125)
T ss_dssp HHHHHHC
T ss_pred HHHHhcc
Confidence 9987765
No 147
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.21 E-value=1.4e-10 Score=99.50 Aligned_cols=106 Identities=22% Similarity=0.243 Sum_probs=96.1
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHh-----hC
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI------PSYFTNRALCYLKLKQYVHCCDDCRKALE-----LE 78 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----l~ 78 (253)
.+..+..+..+|..+...|+|++|+.+|.+++...+.. +.++.++|.+|..+|++++|+..+++++. .+
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 45567889999999999999999999999999885543 25899999999999999999999999999 46
Q ss_pred -CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 79 -PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 79 -p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
|....+++.+|.++..+|++++|+..+++++++.+..
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 297 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA 297 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 8889999999999999999999999999999997764
No 148
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.20 E-value=1.4e-10 Score=96.88 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=78.0
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc----
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV------IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL---- 81 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---- 81 (253)
..+..+.++|..+...|+|++|+.+|.+++.+.+. ...++.++|.+|.. |++++|+..|++|+.+.|..
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~ 152 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR 152 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence 45777788888888888888888888888777432 36777788888877 88888888888888776543
Q ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 82 --VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 82 --~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
..++.++|.++..+|++++|+.+|++++++.|.+.
T Consensus 153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 189 (307)
T 2ifu_A 153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME 189 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 46677788888888888888888888888777653
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.20 E-value=9e-10 Score=92.99 Aligned_cols=116 Identities=9% Similarity=0.020 Sum_probs=106.0
Q ss_pred CCCCcccHHHHHHHHHHHHhccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--HHHHHHHHHHH
Q psy11461 7 FTTNNLSDKELKDEGNRYFGLRQ----------YEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ--YVHCCDDCRKA 74 (253)
Q Consensus 7 ~~~~~~~a~~~~~~g~~~~~~g~----------~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~a 74 (253)
...+|+...+|...+.++...|. +.+++.++..++..+|.+..+|..|+.++..+++ +++++..+.++
T Consensus 57 L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 136 (331)
T 3dss_A 57 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF 136 (331)
T ss_dssp HTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred HHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence 44678999999999999988776 7899999999999999999999999999999994 99999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhhchhcccchHHH
Q psy11461 75 LELEPSLVKAQFFLGQALHEINH-YDEAVKHLQRAYDLSREQNLNYGDD 122 (253)
Q Consensus 75 l~l~p~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~l~p~~~~~~~~~ 122 (253)
+.++|.|..+|.+++.++...|. ++++++++.++++.+|.+..++...
T Consensus 137 l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R 185 (331)
T 3dss_A 137 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYR 185 (331)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999998 6999999999999999986655433
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.19 E-value=3.7e-10 Score=79.15 Aligned_cols=83 Identities=11% Similarity=0.063 Sum_probs=78.8
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG 89 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 89 (253)
.|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++..+|++++|+..+.+++.++|++..++..++
T Consensus 34 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 34 DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHH
Q psy11461 90 QAL 92 (253)
Q Consensus 90 ~~~ 92 (253)
.+.
T Consensus 114 ~~~ 116 (118)
T 1elw_A 114 NME 116 (118)
T ss_dssp HHH
T ss_pred Hhh
Confidence 764
No 151
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.19 E-value=1.4e-10 Score=101.64 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=78.7
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-------------------hCHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKL-------------------KQYVHCCDD 70 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~-------------------~~~~~A~~~ 70 (253)
.|..+..+..+|..+...|++++|+..|.+++..+|+++.++.++|.+|... +.++.|+..
T Consensus 243 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 322 (472)
T 4g1t_A 243 APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322 (472)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 4556667777777777777777777777777777777777777777776543 335677777
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 71 CRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 71 ~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+.+++.++|.+..+++.+|.++...|++++|+.+|++++++.|++
T Consensus 323 ~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 777777777777777777777778888888888888887776654
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.18 E-value=3e-09 Score=87.85 Aligned_cols=104 Identities=11% Similarity=0.046 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchHHHHH
Q psy11461 45 PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIA 124 (253)
Q Consensus 45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 124 (253)
|.++..+.++|.++...|+|++|+..|.+++.++|++..+++++|.++..+|++++|+..++++++++|++...+.....
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999998766665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 125 CQLRIAKKKRWAETEEKRIAQEIE 148 (253)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~ 148 (253)
......+...+....++.+...|+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc
Confidence 555555555555555555555554
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.18 E-value=4.2e-10 Score=93.22 Aligned_cols=101 Identities=17% Similarity=0.039 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHH----HhCCC--CHHHHHHHHHHHHHhhCHHHHHHHHHHHH---hhCCCc---
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAI----IKNPV--IPSYFTNRALCYLKLKQYVHCCDDCRKAL---ELEPSL--- 81 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai----~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al---~l~p~~--- 81 (253)
...++.+|..+...|++++|+.+|.+++ ..... ...++.++|.+|..+|++++|+..+.+++ ...|++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~ 194 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc
Confidence 4445556666666666666666666665 22111 23456666666666666666666666666 223332
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 82 -VKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 82 -~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
..+++++|.++..+|++++|+.++++++++.+.
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 145666666666666666666666666665543
No 154
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.18 E-value=1.4e-10 Score=99.73 Aligned_cols=96 Identities=19% Similarity=0.195 Sum_probs=90.3
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
..+..+..+.++|.++++.|+|++|+.+|++++.++|.++.+++++|.+|..+|++++|+.++++|++++|++..++..+
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l 347 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHH
Q psy11461 89 GQALHEINHYDEAVKH 104 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~ 104 (253)
+.++..+++++++.+.
T Consensus 348 ~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988887653
No 155
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.18 E-value=8.2e-11 Score=97.52 Aligned_cols=103 Identities=13% Similarity=0.059 Sum_probs=88.4
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc----
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIK-------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL---- 81 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---- 81 (253)
.+..+..+|.+++..|+|++|+.+|.+++.. .+..+.++.++|.+|..+|++++|+..+.+++.+.+..
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 3667999999999999999999999999953 12234589999999999999999999999999886543
Q ss_pred --HHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhchhc
Q psy11461 82 --VKAQFFLGQALHEIN-HYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 82 --~~a~~~lg~~~~~~~-~~~~A~~~~~~al~l~p~~ 115 (253)
..+++.+|.++..+| .+++|+.+|++|+.+....
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 789999999999999 5799999999999887643
No 156
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.18 E-value=5.2e-10 Score=76.90 Aligned_cols=85 Identities=18% Similarity=0.091 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHHHHHHhhC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcccchH
Q psy11461 44 NPVIPSYFTNRALCYLKLKQ---YVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120 (253)
Q Consensus 44 ~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 120 (253)
+|.++.++..+|.+++..++ .++|...+++++.++|+++.+++.+|..++..|+|++|+..|+++++.+|.+ ...
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~--~~~ 79 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN--LDR 79 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT--CCH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--ccH
Confidence 68899999999999987666 7999999999999999999999999999999999999999999999999983 334
Q ss_pred HHHHHHHHHH
Q psy11461 121 DDIACQLRIA 130 (253)
Q Consensus 121 ~~~~~~~~~~ 130 (253)
..+...+..+
T Consensus 80 ~~i~~~I~~A 89 (93)
T 3bee_A 80 VTIIESINKA 89 (93)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4454444443
No 157
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.17 E-value=3e-10 Score=80.54 Aligned_cols=85 Identities=12% Similarity=-0.021 Sum_probs=74.0
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc--HHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL--VKAQ 85 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~ 85 (253)
...|..+..++.+|..++..|++++|+..|.+++..+|.++.++.++|.+|..+|++++|+..+++++.++|.+ ..+.
T Consensus 13 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (115)
T 2kat_A 13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVV 92 (115)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999998753 3444
Q ss_pred HHHHHHH
Q psy11461 86 FFLGQAL 92 (253)
Q Consensus 86 ~~lg~~~ 92 (253)
..+...+
T Consensus 93 ~~l~~~l 99 (115)
T 2kat_A 93 KELQVFL 99 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4443333
No 158
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.17 E-value=1e-10 Score=97.76 Aligned_cols=106 Identities=14% Similarity=0.117 Sum_probs=93.7
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC--
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV------IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS-- 80 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-- 80 (253)
........+...|+.+...|+|++|+.+|.+++.+.+. ...++.++|.+|..+|++++|+.++++++.+.+.
T Consensus 31 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g 110 (307)
T 2ifu_A 31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG 110 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC
Confidence 34567888999999999999999999999999998653 4999999999999999999999999999988542
Q ss_pred ----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 81 ----LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 81 ----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
...++.++|.++.. |++++|+.+|++|+.+.|..
T Consensus 111 ~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~ 148 (307)
T 2ifu_A 111 TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE 148 (307)
T ss_dssp CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC
Confidence 24678999999988 99999999999999998864
No 159
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.16 E-value=3.5e-10 Score=76.11 Aligned_cols=71 Identities=30% Similarity=0.407 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 46 VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
.++.++.++|.++...|++++|+..+++++.++|.+..+++.+|.++...|++++|+..|+++++++|++.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 77 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999874
No 160
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.15 E-value=4.2e-09 Score=87.14 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=92.2
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc--
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV------IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL-- 81 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-- 81 (253)
++.....+...+..++..|+|++|+..|.+++...+. ....+..+|.++...|++++|+..+.+++.+.+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 3567888999999999999999999999999998764 47777889999999999999999999999876543
Q ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461 82 ----VKAQFFLGQALHEINHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 82 ----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p 113 (253)
..+++.+|.++..+|++++|+.+|.+++++..
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~ 186 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999996543
No 161
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.15 E-value=3.3e-10 Score=83.78 Aligned_cols=102 Identities=22% Similarity=0.322 Sum_probs=90.0
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC------
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI------PSYFTNRALCYLKLKQYVHCCDDCRKALELEPS------ 80 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~------ 80 (253)
.+..+..+|..++..|++++|+..|.+++...+.. +.++.++|.++..+|++++|+..+.+++.+.+.
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 127 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG 127 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHh
Confidence 45688999999999999999999999999886543 568999999999999999999999999987432
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 81 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
...++..+|.++...|++++|+..+.+++++...
T Consensus 128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 128 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999988654
No 162
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.15 E-value=2.8e-10 Score=97.16 Aligned_cols=106 Identities=15% Similarity=0.299 Sum_probs=95.8
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc--
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP------SYFTNRALCYLKLKQYVHCCDDCRKALELEPSL-- 81 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-- 81 (253)
.+..+..+..+|..++..|++++|+.+|.+++...|... .++.++|.++..+|++++|+..+.+++.+.|..
T Consensus 183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 262 (406)
T 3sf4_A 183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 262 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC
Confidence 455677899999999999999999999999998866543 389999999999999999999999999987765
Q ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 82 ----VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 82 ----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
..++..+|.++...|++++|+..|.+++.+.+..
T Consensus 263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 7789999999999999999999999999998775
No 163
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.14 E-value=3.5e-10 Score=78.99 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 47 IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
++..+.++|.++...|+|++|+..+++++.++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 457899999999999999999999999999999999999999999999999999999999999999986
No 164
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.14 E-value=5.1e-10 Score=95.90 Aligned_cols=104 Identities=17% Similarity=0.157 Sum_probs=95.1
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh-----hCCC
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNP------VIPSYFTNRALCYLKLKQYVHCCDDCRKALE-----LEPS 80 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----l~p~ 80 (253)
..+..+..+|..+...|+|++|+.+|.+++...+ ..+.++.++|.+|..+|++++|+..+.+++. .+|.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 4678899999999999999999999999998743 1346899999999999999999999999999 7888
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 81 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
...+++.+|.++..+|++++|+..+++++++.+..
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 89999999999999999999999999999997764
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.14 E-value=1.1e-09 Score=78.61 Aligned_cols=87 Identities=10% Similarity=0.074 Sum_probs=76.9
Q ss_pred CCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI---PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA 84 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (253)
+.++..+..++.+|.+++..|+|++|+..|.+++..+|++ +.+++++|.++..+|++++|+..+++++..+|++..+
T Consensus 33 p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 33 PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 3444455899999999999999999999999999999999 8899999999999999999999999999999999887
Q ss_pred HHHHHHHHHH
Q psy11461 85 QFFLGQALHE 94 (253)
Q Consensus 85 ~~~lg~~~~~ 94 (253)
...+..+...
T Consensus 113 ~~a~~~l~~l 122 (129)
T 2xev_A 113 RVAQERLQSI 122 (129)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7665554443
No 166
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.13 E-value=2.5e-09 Score=90.30 Aligned_cols=110 Identities=9% Similarity=-0.027 Sum_probs=103.2
Q ss_pred CCcccHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHhhCCCcHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLR--QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ-YVHCCDDCRKALELEPSLVKAQ 85 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g--~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~a~ 85 (253)
.+|.+..+|...+..+...| .+.+++.++.+++..+|.|..+|+.++.+....|. +++++.++.+++..+|.|..||
T Consensus 103 ~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW 182 (331)
T 3dss_A 103 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW 182 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 47889999999999999988 49999999999999999999999999999999999 6999999999999999999999
Q ss_pred HHHHHHHHHh--------------CCHHHHHHHHHHHHhhchhcccc
Q psy11461 86 FFLGQALHEI--------------NHYDEAVKHLQRAYDLSREQNLN 118 (253)
Q Consensus 86 ~~lg~~~~~~--------------~~~~~A~~~~~~al~l~p~~~~~ 118 (253)
.+++.++..+ +.++++++++.+++.++|++..+
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~Sa 229 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSA 229 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999988 56899999999999999998543
No 167
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.12 E-value=2.3e-10 Score=98.37 Aligned_cols=105 Identities=16% Similarity=0.273 Sum_probs=94.9
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc---
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP------SYFTNRALCYLKLKQYVHCCDDCRKALELEPSL--- 81 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--- 81 (253)
+..+..+..+|..++..|++++|+.+|.+++...|... .++.++|.+|..+|++++|+..+++++.+.+..
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 45567899999999999999999999999999876533 389999999999999999999999999987754
Q ss_pred ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 82 ---VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 82 ---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
..++..+|.++..+|++++|+.+|++++.+.+..
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 6789999999999999999999999999998775
No 168
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=4.8e-10 Score=101.70 Aligned_cols=111 Identities=9% Similarity=-0.011 Sum_probs=104.2
Q ss_pred CCcccHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHhhCCCcHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLR--QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK-QYVHCCDDCRKALELEPSLVKAQ 85 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g--~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~ 85 (253)
.+|+...+|..++..+...| +|++|++++.++++.+|.+..+|..|+.+...+| .+++++.++.++++.+|.|..+|
T Consensus 102 ~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW 181 (567)
T 1dce_A 102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW 181 (567)
T ss_dssp HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHH
Confidence 46889999999999999999 7799999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHh--------------CCHHHHHHHHHHHHhhchhcccch
Q psy11461 86 FFLGQALHEI--------------NHYDEAVKHLQRAYDLSREQNLNY 119 (253)
Q Consensus 86 ~~lg~~~~~~--------------~~~~~A~~~~~~al~l~p~~~~~~ 119 (253)
+++|.++..+ +.++++++++.+|+.++|++...+
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW 229 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW 229 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHH
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999886 568999999999999999985433
No 169
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.11 E-value=1.2e-09 Score=90.52 Aligned_cols=101 Identities=17% Similarity=0.044 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHhh-------CCCcH
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI------PSYFTNRALCYLKLKQYVHCCDDCRKALEL-------EPSLV 82 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-------~p~~~ 82 (253)
.+..+|..+...|++++|+.+|.+++...+.. ..++.++|.+|..+|++++|+..+++++.+ .+...
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 44568999999999999999999999975432 347999999999999999999999999953 23345
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
.+++++|.++..+|++++|+.++.+++++.+...
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~ 230 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999999988753
No 170
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.10 E-value=2.1e-09 Score=95.63 Aligned_cols=98 Identities=13% Similarity=0.130 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--------CC
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL--------EP 79 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--------~p 79 (253)
.....+..+..+|+|++|+..|.+++.. +|.....+.|+|.+|..+|+|++|+..+++++.+ +|
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 3445566678899999999999999987 3444568999999999999999999999999976 34
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461 80 SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 80 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p 113 (253)
+....+.++|.+|..+|++++|+.+|++|+.+-.
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~ 424 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL 424 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999998743
No 171
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.10 E-value=5.1e-10 Score=95.90 Aligned_cols=105 Identities=17% Similarity=0.125 Sum_probs=88.3
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC--
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV-------IPSYFTNRALCYLKLKQYVHCCDDCRKALELEP-- 79 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p-- 79 (253)
..+..+..+..+|..++..|++..|+.++.+|+...+. .+.++.++|.+|..+|++++|+..+.+++.+.+
T Consensus 136 ~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 215 (378)
T 3q15_A 136 DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI 215 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 44567889999999999999999999999999987443 245788999999999999999999999998743
Q ss_pred ----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461 80 ----SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 80 ----~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p 113 (253)
....++.++|.++..+|++++|+.+|.+++.+..
T Consensus 216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 1346788999999999999999999999999544
No 172
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.10 E-value=4.1e-10 Score=93.09 Aligned_cols=106 Identities=15% Similarity=0.301 Sum_probs=94.3
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc--
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI------PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL-- 81 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-- 81 (253)
.+..+..+..+|..++..|++++|+..|.+++...+.. ..++.++|.++...|++++|+..+.+++.+.+..
T Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 258 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence 34556789999999999999999999999999885542 3389999999999999999999999999987665
Q ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 82 ----VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 82 ----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
..++..+|.++...|++++|+..+++++.+.+..
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 7789999999999999999999999999998765
No 173
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.09 E-value=2e-09 Score=90.14 Aligned_cols=109 Identities=8% Similarity=-0.102 Sum_probs=102.8
Q ss_pred CCcccHHHHHHHHHHH----Hhc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHH--HHHHHHHHHHhhCC
Q psy11461 9 TNNLSDKELKDEGNRY----FGL---RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYV--HCCDDCRKALELEP 79 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~----~~~---g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~--~A~~~~~~al~l~p 79 (253)
.+|+...+|..++..+ ... +++.+++.++.+++..+|.+..+|..|+.++..++.++ +++..+.+++.++|
T Consensus 98 ~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~ 177 (306)
T 3dra_A 98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL 177 (306)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence 4688889999999999 666 89999999999999999999999999999999999999 99999999999999
Q ss_pred CcHHHHHHHHHHHHHhCC------HHHHHHHHHHHHhhchhccc
Q psy11461 80 SLVKAQFFLGQALHEINH------YDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 80 ~~~~a~~~lg~~~~~~~~------~~~A~~~~~~al~l~p~~~~ 117 (253)
.|..||.+++.++..++. ++++++++.+++.++|++..
T Consensus 178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S 221 (306)
T 3dra_A 178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS 221 (306)
T ss_dssp TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH
T ss_pred CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCcc
Confidence 999999999999999987 99999999999999999844
No 174
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.09 E-value=4.6e-09 Score=85.53 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=92.1
Q ss_pred cccHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhhCCCcH
Q psy11461 11 NLSDKELKDEGNRYFG----LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK----LKQYVHCCDDCRKALELEPSLV 82 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~----~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~ 82 (253)
+..+.+++.+|..+.. .+++++|+.+|.+++..+ ++.++.++|.+|.. .+++++|+.++++++.+ +++
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~ 110 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYA 110 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCc
Confidence 4556789999999999 999999999999999985 89999999999999 99999999999999997 489
Q ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHhhchh
Q psy11461 83 KAQFFLGQALHE----INHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 83 ~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~p~ 114 (253)
.+++.+|.++.. .+++++|+..|+++++.++.
T Consensus 111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (273)
T 1ouv_A 111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDG 146 (273)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcH
Confidence 999999999999 99999999999999998643
No 175
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.09 E-value=1.1e-09 Score=92.86 Aligned_cols=113 Identities=11% Similarity=0.060 Sum_probs=92.2
Q ss_pred CCcccHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-h-CHHHHHHHHHHHHhhCCCcHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLR-QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKL-K-QYVHCCDDCRKALELEPSLVKAQ 85 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g-~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~al~l~p~~~~a~ 85 (253)
.+|+...+|..++.++...| .+++++.++.+++..+|.+..+|..|+.++..+ + ++++++..+.+++.++|.|..+|
T Consensus 83 ~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW 162 (349)
T 3q7a_A 83 MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTW 162 (349)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHH
T ss_pred hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHH
Confidence 46777888888888888888 488888888888888888888888888888887 6 78888888888888888888888
Q ss_pred HHHHHHHHHhCCHH--------HHHHHHHHHHhhchhcccchHH
Q psy11461 86 FFLGQALHEINHYD--------EAVKHLQRAYDLSREQNLNYGD 121 (253)
Q Consensus 86 ~~lg~~~~~~~~~~--------~A~~~~~~al~l~p~~~~~~~~ 121 (253)
..++.++..+|.++ ++++++.++++.+|.+..++..
T Consensus 163 ~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~ 206 (349)
T 3q7a_A 163 AYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGW 206 (349)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 88888888887776 8888888888888887554433
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.1e-09 Score=80.20 Aligned_cols=80 Identities=19% Similarity=0.107 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALH 93 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 93 (253)
...+..+|..++..|+|++|+..|.+++..+|.++.++.++|.++..+|++++|+..+.+++.++|++..++..++.+..
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999988877643
No 177
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.08 E-value=8.5e-11 Score=81.84 Aligned_cols=71 Identities=21% Similarity=0.306 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 44 NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 44 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
+|.++.++..+|.++...|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|+++++++|.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 68888999999999999999999999999999999999999999999999999999999999999999988
No 178
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.06 E-value=1.1e-09 Score=90.22 Aligned_cols=99 Identities=11% Similarity=0.014 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC--CC-cHHHHHHHHH
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKN-PVI-PSYFTNRALCYLKLKQYVHCCDDCRKALELE--PS-LVKAQFFLGQ 90 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~-p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--p~-~~~a~~~lg~ 90 (253)
..+.+|..+++.|+|++|+.+|+.++... |.. ..+++++|.++..+|++++|+.+|++++... |. ...+++++|.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gl 216 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAM 216 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence 44445555555555555555554443321 100 1244445555555555555555555554322 32 3344555555
Q ss_pred HHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
|+..+|+.++|...|++++..+|+
T Consensus 217 aL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 217 ARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCc
Confidence 555555555555555555554443
No 179
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.05 E-value=1.1e-09 Score=84.80 Aligned_cols=108 Identities=18% Similarity=0.118 Sum_probs=92.8
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC-
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK---NPV----IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS- 80 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~---~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~- 80 (253)
..+..+..+..+|..+...|++++|+..|.+++.. .++ .+.++.++|.++..+|++++|+..+.+++.+.+.
T Consensus 61 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 140 (203)
T 3gw4_A 61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA 140 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 44567889999999999999999999999999998 443 3567999999999999999999999999976432
Q ss_pred -c----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 81 -L----VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 81 -~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
+ ..++..+|.++...|++++|+..+++++++.....
T Consensus 141 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 2 34578999999999999999999999999877653
No 180
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.05 E-value=3.1e-09 Score=95.18 Aligned_cols=107 Identities=12% Similarity=-0.029 Sum_probs=97.6
Q ss_pred CcccHHHHHHHHHHHHh-------ccCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFG-------LRQYE-------EAINCYTRAII-KNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~-------~g~~~-------~A~~~y~~ai~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (253)
.|..+..|..+|..+.. .|+++ +|+..|.+|+. .+|.++.+|..+|..+...|++++|...|+++
T Consensus 268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a 347 (530)
T 2ooe_A 268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 347 (530)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 36678899999999886 79987 99999999997 79999999999999999999999999999999
Q ss_pred HhhCCCcH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 75 LELEPSLV-KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 75 l~l~p~~~-~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
+.++|.++ .+|..+|.++...|++++|...|.+|++..|...
T Consensus 348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~ 390 (530)
T 2ooe_A 348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH 390 (530)
T ss_dssp HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCT
T ss_pred hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCch
Confidence 99999985 6999999999999999999999999999877653
No 181
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.02 E-value=4.1e-09 Score=72.30 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 51 FTNRALCYLKLKQYVHCCDDCRKALELEPSLVK-AQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~-a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
..++|.++...|++++|+..+++++.++|++.. +++.+|.++..+|++++|+..|+++++++|++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 70 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 357899999999999999999999999999999 9999999999999999999999999999999754
No 182
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.01 E-value=6.5e-09 Score=93.09 Aligned_cols=111 Identities=9% Similarity=-0.104 Sum_probs=99.4
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP-SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
..|.....|..+|..+...|+++.|+..|.+++...|.++ .+|.++|.++.+.|++++|...|.+|+...|.+...+..
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 395 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 395 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence 3578899999999999999999999999999999999986 699999999999999999999999999999988777776
Q ss_pred HHHH-HHHhCCHHHHHHHHHHHHhhchhcccch
Q psy11461 88 LGQA-LHEINHYDEAVKHLQRAYDLSREQNLNY 119 (253)
Q Consensus 88 lg~~-~~~~~~~~~A~~~~~~al~l~p~~~~~~ 119 (253)
.+.+ +...|++++|...|+++++..|++...+
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~ 428 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV 428 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHH
Confidence 6665 3468999999999999999999875433
No 183
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.01 E-value=5.4e-09 Score=73.16 Aligned_cols=78 Identities=15% Similarity=0.058 Sum_probs=68.9
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKN-------PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA 84 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (253)
.++...+.+|..++..|+|..|+..|.+|+... +..+.++.++|.|++++|+++.|+..+++++.++|++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 457788999999999999999999999999863 3457789999999999999999999999999999999888
Q ss_pred HHHHH
Q psy11461 85 QFFLG 89 (253)
Q Consensus 85 ~~~lg 89 (253)
..+++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 87776
No 184
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.99 E-value=4.6e-09 Score=82.96 Aligned_cols=97 Identities=15% Similarity=0.032 Sum_probs=88.9
Q ss_pred ccHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhhCC--Cc
Q psy11461 12 LSDKELKDEGNRYFGLR----QYEEAINCYTRAIIKNPVIPSYFTNRALCYLK----LKQYVHCCDDCRKALELEP--SL 81 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g----~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p--~~ 81 (253)
..+.+++.+|..+.. + ++++|+.+|.+++. +.++.+++++|.+|.. .+++++|+.++++++...| .+
T Consensus 48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 124 (212)
T 3rjv_A 48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA 124 (212)
T ss_dssp TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence 467889999999998 7 99999999999965 5789999999999988 8899999999999999988 46
Q ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHHhh
Q psy11461 82 VKAQFFLGQALHE----INHYDEAVKHLQRAYDL 111 (253)
Q Consensus 82 ~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l 111 (253)
+.+++.+|.+|.. .+++++|+..|+++.++
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 9999999999999 88999999999999998
No 185
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.99 E-value=4.4e-09 Score=89.26 Aligned_cols=110 Identities=9% Similarity=-0.040 Sum_probs=103.9
Q ss_pred CCCcccHHHHHHHHHHHHhc-c-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHH--------HHHHHHHHHHhh
Q psy11461 8 TTNNLSDKELKDEGNRYFGL-R-QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYV--------HCCDDCRKALEL 77 (253)
Q Consensus 8 ~~~~~~a~~~~~~g~~~~~~-g-~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~--------~A~~~~~~al~l 77 (253)
..+|++..+|..++..+... + ++++++.++.+++..+|.+..+|..|+.++..++.++ +++..+.+++.+
T Consensus 117 ~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 117 VQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV 196 (349)
T ss_dssp HTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence 35789999999999999987 7 9999999999999999999999999999999999988 999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHhhchhccc
Q psy11461 78 EPSLVKAQFFLGQALHEINH-------YDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 78 ~p~~~~a~~~lg~~~~~~~~-------~~~A~~~~~~al~l~p~~~~ 117 (253)
+|.|..||.+++.++..++. ++++++++.+++.++|++..
T Consensus 197 dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S 243 (349)
T 3q7a_A 197 DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS 243 (349)
T ss_dssp CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999987 79999999999999999843
No 186
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.98 E-value=1.6e-08 Score=71.99 Aligned_cols=70 Identities=17% Similarity=0.128 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 46 VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
..+..+..+|.++...|++++|+..+.+++.++|.+..+++.+|.++...|++++|+..+.+++.+.|.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 3467889999999999999999999999999999999999999999999999999999999999999976
No 187
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=5.3e-09 Score=82.60 Aligned_cols=97 Identities=15% Similarity=0.097 Sum_probs=90.6
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh----CHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK----QYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
.++.+++.+|..++..+++++|+.+|++++.. .++.+++++|.+|.. + ++++|+.++++++. +.++.++++
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~ 90 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV 90 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence 56889999999999999999999999999875 689999999999998 7 89999999999965 679999999
Q ss_pred HHHHHHH----hCCHHHHHHHHHHHHhhch
Q psy11461 88 LGQALHE----INHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 88 lg~~~~~----~~~~~~A~~~~~~al~l~p 113 (253)
+|.+|.. .+++++|+..|+++.+.++
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence 9999998 8999999999999999988
No 188
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.97 E-value=1.1e-08 Score=76.02 Aligned_cols=88 Identities=13% Similarity=0.096 Sum_probs=80.9
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHhhC-C-CcHHHHHHHHHHHHHhCCHHHHH
Q psy11461 28 RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK---QYVHCCDDCRKALELE-P-SLVKAQFFLGQALHEINHYDEAV 102 (253)
Q Consensus 28 g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~-p-~~~~a~~~lg~~~~~~~~~~~A~ 102 (253)
+....+.+.|.+.+..+|.+..+.+++|.|+.+.+ +..+++..++.+++.+ | ++..++|++|..++.+|+|++|.
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34567788899999989999999999999999988 6779999999999998 7 67899999999999999999999
Q ss_pred HHHHHHHhhchhc
Q psy11461 103 KHLQRAYDLSREQ 115 (253)
Q Consensus 103 ~~~~~al~l~p~~ 115 (253)
++++++++++|++
T Consensus 92 ~y~~~lL~ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHhcCCCC
Confidence 9999999999997
No 189
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.95 E-value=4e-09 Score=92.42 Aligned_cols=93 Identities=11% Similarity=0.060 Sum_probs=79.8
Q ss_pred HHHHHhccCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--------CCCcHHH
Q psy11461 21 GNRYFGLRQYEEAINCYTRAIIK-----NPV---IPSYFTNRALCYLKLKQYVHCCDDCRKALEL--------EPSLVKA 84 (253)
Q Consensus 21 g~~~~~~g~~~~A~~~y~~ai~~-----~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--------~p~~~~a 84 (253)
+......|+|++|+..|.+++.+ .|+ ....+.|+|.+|..+|+|++|+..+++++.+ +|+....
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 44445678999999999999986 344 4567999999999999999999999999976 3455667
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461 85 QFFLGQALHEINHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 113 (253)
++++|.+|..+|++++|+.+|++|+++-.
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998743
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.93 E-value=3.1e-09 Score=94.57 Aligned_cols=107 Identities=16% Similarity=0.037 Sum_probs=93.9
Q ss_pred CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461 6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77 (253)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (253)
.-+.+|..+..+.++|..|..+|+|++|+.+|.+++.+ +|..+..+.|+|.+|..+|+|++|+..+++|+.+
T Consensus 343 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 343 FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999977 4555678999999999999999999999999976
Q ss_pred -----CCC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461 78 -----EPS---LVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 78 -----~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 112 (253)
.|+ ......+++.++..++.+.+|...|.++.+-.
T Consensus 423 ~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 423 LLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 45667899999999999999999999987654
No 191
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.93 E-value=3.6e-09 Score=87.15 Aligned_cols=97 Identities=15% Similarity=0.090 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc--HHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL--VKAQFFLGQA 91 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~~~lg~~ 91 (253)
......++..+...|+|++|.+.|..++...|.+. ..+.+|.++++.++|++|+..++.++...+.. ..+++++|.+
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence 45667789999999999999999999999999888 99999999999999999999999888763222 4589999999
Q ss_pred HHHhCCHHHHHHHHHHHHhh
Q psy11461 92 LHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 92 ~~~~~~~~~A~~~~~~al~l 111 (253)
+..+|++++|+..|++++.-
T Consensus 181 l~~LG~~~eAl~~l~~a~~g 200 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDS 200 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTS
T ss_pred HHHCCCHHHHHHHHHHHhcC
Confidence 99999999999999999853
No 192
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.90 E-value=2e-08 Score=87.91 Aligned_cols=99 Identities=13% Similarity=0.113 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh--------C
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIK-----NPV---IPSYFTNRALCYLKLKQYVHCCDDCRKALEL--------E 78 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-----~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--------~ 78 (253)
.........+..+|+|++|+..|.+++.. .|+ ....+.++|.+|..+|+|++|+..+++++.+ +
T Consensus 288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 34455566778899999999999999976 333 3568999999999999999999999999976 3
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461 79 PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 79 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p 113 (253)
|.....++++|.+|..+|++++|+.+|++|+++-.
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 44556799999999999999999999999998743
No 193
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.87 E-value=1.9e-08 Score=69.00 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=67.6
Q ss_pred CCcccHHHHHHHHHHHHhccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQ---YEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL 81 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~---~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (253)
++|.++..+..+|..++..++ .++|...+.+++..+|+++.++..+|..+++.|+|++|+..+++++..+|.+
T Consensus 1 ~~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 1 SNAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp -CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 367889999999999976655 7999999999999999999999999999999999999999999999999984
No 194
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.81 E-value=1.2e-07 Score=80.64 Aligned_cols=105 Identities=10% Similarity=0.001 Sum_probs=70.1
Q ss_pred CcccHHHHHHHHHHHHhccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHH-------HHHH-HHH--HHHh
Q psy11461 10 NNLSDKELKDEGNRYFGLRQ---YEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYV-------HCCD-DCR--KALE 76 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~---~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~-------~A~~-~~~--~al~ 76 (253)
....+-.++..|..++..+. +..|+.+|.+|++++|+++.++..++.||.....+. .++. .+. .++.
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 34467778888988887644 589999999999999999999998888775322110 1111 111 1234
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 77 l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
++|.++.++..+|.++...|++++|+..+++|+.++|+
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s 309 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS 309 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 55666666666666666667777777777777777643
No 195
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.80 E-value=5.8e-08 Score=82.50 Aligned_cols=101 Identities=17% Similarity=0.086 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC-----
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKN--------PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS----- 80 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----- 80 (253)
+..+..+|..++..|++++|+..|.+++... |....++.++|.++...|++++|...+.+++.+.+.
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 4567889999999999999999999999874 334567889999999999999999999999998765
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 81 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
...++..+|.++...|++++|...+.+++.+.+.
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 3567889999999999999999999999988654
No 196
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.79 E-value=6.2e-08 Score=82.31 Aligned_cols=103 Identities=10% Similarity=-0.043 Sum_probs=86.7
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC--------
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI------PSYFTNRALCYLKLKQYVHCCDDCRKALELE-------- 78 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------- 78 (253)
.+..+..+|..++..|+++.|+..+.+++...|.. ..++.++|.++..+|++++|+..+++++.+.
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 131 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 131 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence 34577889999999999999999999999875543 2347889999999999999999999999875
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 79 PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 79 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
|....++..+|.++...|++++|...+.+++.+.+..
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 3345678889999999999999999999999988764
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.77 E-value=1.3e-07 Score=69.55 Aligned_cols=91 Identities=15% Similarity=0.038 Sum_probs=84.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-
Q psy11461 20 EGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK----LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE- 94 (253)
Q Consensus 20 ~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~- 94 (253)
+|..+...+.++.|+.+|+++... .++.+++++|.+|.. .+++++|+.++++|.+. .++.+++++|.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 899999999999999999999987 688999999999999 89999999999999986 689999999999999
Q ss_pred ---hCCHHHHHHHHHHHHhhchh
Q psy11461 95 ---INHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 95 ---~~~~~~A~~~~~~al~l~p~ 114 (253)
.+++++|+..|++|.+.+..
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCH
T ss_pred CCCCcCHHHHHHHHHHHHHCCCH
Confidence 89999999999999988543
No 198
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.72 E-value=4.8e-07 Score=80.06 Aligned_cols=96 Identities=22% Similarity=0.183 Sum_probs=62.4
Q ss_pred cHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHhhCCCcHHH
Q psy11461 13 SDKELKDEGNRYFGL-----RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK---QYVHCCDDCRKALELEPSLVKA 84 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~-----g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~~~a 84 (253)
.+.+++.+|..+... +++++|+..|.+++.. .++.+++++|.+|...| ++++|+.+++++++. .++.+
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a 365 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAA 365 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHH
Confidence 455666677666665 6777777777776664 34566666666666643 666667777666665 45666
Q ss_pred HHHHHHHHHH----hCCHHHHHHHHHHHHhhc
Q psy11461 85 QFFLGQALHE----INHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 85 ~~~lg~~~~~----~~~~~~A~~~~~~al~l~ 112 (253)
++.+|.++.. .+++++|+..|+++.+.+
T Consensus 366 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 366 QFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 6666666666 666666666666666653
No 199
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.68 E-value=1.8e-06 Score=72.00 Aligned_cols=103 Identities=8% Similarity=-0.126 Sum_probs=85.3
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC----cHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNP--VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS----LVKAQ 85 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~ 85 (253)
.....+..+|..+...|++++|+..+.++|..+| .+..++...+.+++++|+.+.|.+.+++..+.+|+ +-...
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l 177 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMI 177 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHH
Confidence 3455667899999999999999999999999887 78889999999999999999999999999999883 23334
Q ss_pred HHH--HHHHHHhC--CHHHHHHHHHHHHhhchh
Q psy11461 86 FFL--GQALHEIN--HYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 86 ~~l--g~~~~~~~--~~~~A~~~~~~al~l~p~ 114 (253)
..+ |++.+..| ++.+|...|..+....|+
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~ 210 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTFPT 210 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence 444 54566667 899999999998887775
No 200
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.66 E-value=1.5e-07 Score=69.89 Aligned_cols=82 Identities=16% Similarity=0.100 Sum_probs=73.4
Q ss_pred CcccHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLR---QYEEAINCYTRAIIKN-P-VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA 84 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g---~~~~A~~~y~~ai~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (253)
.+.+..+.|++|.++.+.+ ++++++..++..+..+ | ....+++++|..|+++++|++|.++++++++++|+|..+
T Consensus 28 ~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 28 GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 3467899999999999988 7789999999999998 7 568999999999999999999999999999999999988
Q ss_pred HHHHHHH
Q psy11461 85 QFFLGQA 91 (253)
Q Consensus 85 ~~~lg~~ 91 (253)
...+..+
T Consensus 108 ~~Lk~~i 114 (152)
T 1pc2_A 108 KELERLI 114 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7655433
No 201
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.63 E-value=6.4e-07 Score=62.38 Aligned_cols=70 Identities=16% Similarity=0.067 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC-------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 47 IPSYFTNRALCYLKLKQYVHCCDDCRKALELE-------PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
++.-.+.+|..++..++|..|+.+++.|+... +....++..+|.++..+|+++.|+..+++++++.|++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 45567899999999999999999999999863 34678899999999999999999999999999999973
No 202
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.60 E-value=3.3e-06 Score=74.70 Aligned_cols=97 Identities=16% Similarity=0.011 Sum_probs=84.4
Q ss_pred ccHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----hCHHHHHHHHHHHHhhCCCcH
Q psy11461 12 LSDKELKDEGNRYFG----LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKL-----KQYVHCCDDCRKALELEPSLV 82 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~----~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~l~p~~~ 82 (253)
..+.+++.+|..+.. .+++++|+.+|++++.. .++.+++++|.+|... +++++|+.+++++++. .+.
T Consensus 253 ~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~ 328 (490)
T 2xm6_A 253 GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDA 328 (490)
T ss_dssp TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCH
Confidence 456788899999988 89999999999999865 5788999999999988 8999999999999886 567
Q ss_pred HHHHHHHHHHHHhC---CHHHHHHHHHHHHhhc
Q psy11461 83 KAQFFLGQALHEIN---HYDEAVKHLQRAYDLS 112 (253)
Q Consensus 83 ~a~~~lg~~~~~~~---~~~~A~~~~~~al~l~ 112 (253)
.+++.+|.++...| ++++|+..|+++.+.+
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~ 361 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG 361 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC
Confidence 89999999998866 7899999999999873
No 203
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.58 E-value=7.1e-07 Score=73.19 Aligned_cols=106 Identities=14% Similarity=0.034 Sum_probs=91.3
Q ss_pred CcccHHHHHHHHHHHHh-----ccC------HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHh-----hCHHHHHHHH
Q psy11461 10 NNLSDKELKDEGNRYFG-----LRQ------YEEAINCYTRAIIKNPV--IPSYFTNRALCYLKL-----KQYVHCCDDC 71 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~-----~g~------~~~A~~~y~~ai~~~p~--~~~~~~~~a~~~~~~-----~~~~~A~~~~ 71 (253)
++.++..++..|..... .|. ...|...+.++++++|+ +..+|..+|..|.+. |+.++|..+|
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f 227 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF 227 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence 46677777776665522 233 46888999999999999 778999999999995 9999999999
Q ss_pred HHHHhhCCCc-HHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhchhc
Q psy11461 72 RKALELEPSL-VKAQFFLGQALHEI-NHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 72 ~~al~l~p~~-~~a~~~lg~~~~~~-~~~~~A~~~~~~al~l~p~~ 115 (253)
++|++++|+. +.+++.+|..++.. |++++|.+.+++|+...|..
T Consensus 228 erAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 228 EHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9999999975 99999999999884 99999999999999999884
No 204
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.56 E-value=2.8e-07 Score=81.09 Aligned_cols=94 Identities=13% Similarity=0.049 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----hCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy11461 16 ELKDEGNRYFGLR---QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKL----KQYVHCCDDCRKALELEPSLVKAQFFL 88 (253)
Q Consensus 16 ~~~~~g~~~~~~g---~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~l~p~~~~a~~~l 88 (253)
+++.+|..+...| ++.+|+..|.+++...|..+..++++|.+|... +++++|+.+|+++. |.++.+++++
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L 254 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 7788888888888 888888888888888888888888888888665 68888888888887 7888888888
Q ss_pred HHH-H--HHhCCHHHHHHHHHHHHhhc
Q psy11461 89 GQA-L--HEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 89 g~~-~--~~~~~~~~A~~~~~~al~l~ 112 (253)
|.+ + ...+++++|+..|+++.+.+
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 887 4 45778888888888887654
No 205
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.48 E-value=3.2e-06 Score=60.60 Aligned_cols=93 Identities=12% Similarity=0.098 Sum_probs=81.6
Q ss_pred HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHH---HHHHHHHHHhhC-C-CcHHHHHHHHHHHHHhCCH
Q psy11461 24 YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVH---CCDDCRKALELE-P-SLVKAQFFLGQALHEINHY 98 (253)
Q Consensus 24 ~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~l~-p-~~~~a~~~lg~~~~~~~~~ 98 (253)
.........+...|.+.+..++.+..+.+++|.++.+..+... ++..+...+..+ | .....+|.+|..++.+|+|
T Consensus 11 ~~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 3344556778888999988888999999999999999887666 999999999877 5 5778999999999999999
Q ss_pred HHHHHHHHHHHhhchhcc
Q psy11461 99 DEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 99 ~~A~~~~~~al~l~p~~~ 116 (253)
..|.+++...|+..|++.
T Consensus 91 ~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCCCCH
Confidence 999999999999999983
No 206
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.46 E-value=1.3e-05 Score=78.42 Aligned_cols=93 Identities=13% Similarity=0.016 Sum_probs=79.0
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCC----------
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS---------- 80 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---------- 80 (253)
...+..|+.+|..+...|++.+|+.+|.+| +++..|.+.|.++.++|+|++|++.+..|.+..++
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 1176 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHH
Confidence 356788999999999999999999999876 78889999999999999999999999887755532
Q ss_pred -----------------cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy11461 81 -----------------LVKAQFFLGQALHEINHYDEAVKHLQRA 108 (253)
Q Consensus 81 -----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a 108 (253)
+...+..+|..+...|+|++|..+|.+|
T Consensus 1177 YAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 2345677888888899999999888887
No 207
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.44 E-value=1.8e-06 Score=75.94 Aligned_cols=97 Identities=16% Similarity=0.064 Sum_probs=85.9
Q ss_pred cccHHHHHHHHHH-H--HhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHhhCCCcH
Q psy11461 11 NLSDKELKDEGNR-Y--FGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK-----QYVHCCDDCRKALELEPSLV 82 (253)
Q Consensus 11 ~~~a~~~~~~g~~-~--~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~l~p~~~ 82 (253)
+..+.+++.+|.. + ...+++++|+.+|++++.. .++.+++++|.+|. .| ++++|+.+|+++. +.++
T Consensus 245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~ 318 (452)
T 3e4b_A 245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREV 318 (452)
T ss_dssp GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCH
Confidence 5678899999998 4 5789999999999999865 58999999999998 56 9999999999999 8999
Q ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHhhch
Q psy11461 83 KAQFFLGQALHE----INHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 83 ~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~p 113 (253)
.+++++|.+|.. ..++++|+..|+++.+.+.
T Consensus 319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 999999998887 3499999999999998643
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.36 E-value=8e-07 Score=77.76 Aligned_cols=90 Identities=18% Similarity=0.094 Sum_probs=74.2
Q ss_pred CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461 6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77 (253)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (253)
.-+.+|..+..+.++|..|..+|+|++|+.+|.+++.. +|..+..++|+|.+|..+|++++|+..+++|+.+
T Consensus 321 lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 321 LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 44578889999999999999999999999999999976 4455668999999999999999999999999976
Q ss_pred -----CCCcH---HHHHHHHHHHHHh
Q psy11461 78 -----EPSLV---KAQFFLGQALHEI 95 (253)
Q Consensus 78 -----~p~~~---~a~~~lg~~~~~~ 95 (253)
.|+++ ..+.+++.+...+
T Consensus 401 ~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 401 MRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 34443 4455666665543
No 209
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.2e-05 Score=69.21 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=33.5
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461 17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP-----------------SYFTNRALCYLKLKQYVHCCDDCRKALE 76 (253)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (253)
....|..+...|+|.+|++.|.+++...|... .++.++|.+|..+|+|++|+..+.+++.
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455555666666666666666665555422 2355556666666666666655555444
No 210
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.29 E-value=1.6e-05 Score=77.78 Aligned_cols=95 Identities=21% Similarity=0.285 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC--------------
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP-------------- 79 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p-------------- 79 (253)
...+...|..++..|+|++|+.+|.++ ..|..+|.||.++|++++|++.+++|....+
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHH
Confidence 356778999999999999999999996 4799999999999999999999999955433
Q ss_pred -----------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 80 -----------SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 80 -----------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
.++..+..++..|...|.+++|+.++++++.+++.+.
T Consensus 1267 ~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A 1267 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHM 1314 (1630)
T ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh
Confidence 1334455667778889999999999999999997753
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.28 E-value=1.4e-06 Score=76.27 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=65.4
Q ss_pred CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461 6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77 (253)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (253)
.-+.+|..+..+.++|..|..+|+|++|+.+|.+++.+ +|+.+..++|+|.+|..+|++++|+..+++|+.+
T Consensus 332 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 332 FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 44578999999999999999999999999999999977 4555678999999999999999999999999986
No 212
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=2.2e-05 Score=67.63 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 48 PSYFTNRALCYLKLKQYVHCCDDCRKALEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
..++.++|.+|...|+|.+|+..+.+++.. .+....++..+|.++..+|++++|...+++++.+.+...
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 209 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY 209 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC
Confidence 567889999999999999999999999875 234567899999999999999999999999999877653
No 213
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.24 E-value=6.1e-06 Score=60.39 Aligned_cols=80 Identities=20% Similarity=0.169 Sum_probs=71.6
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hCCHHHHH
Q psy11461 27 LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE----INHYDEAV 102 (253)
Q Consensus 27 ~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~----~~~~~~A~ 102 (253)
.+++++|+.+|+++....+..+. +|.+|...+.+++|+.+++++... .++.+++++|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 36789999999999998754443 999999999999999999999986 789999999999999 89999999
Q ss_pred HHHHHHHhhc
Q psy11461 103 KHLQRAYDLS 112 (253)
Q Consensus 103 ~~~~~al~l~ 112 (253)
..|++|.+..
T Consensus 82 ~~~~~Aa~~g 91 (138)
T 1klx_A 82 QYYSKACGLN 91 (138)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHcCC
Confidence 9999999873
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.23 E-value=2.1e-05 Score=64.55 Aligned_cols=75 Identities=11% Similarity=-0.044 Sum_probs=61.8
Q ss_pred CCCCHHHHHHHHHHHHH-----------hhCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHh-----CCHHHHHHHH
Q psy11461 44 NPVIPSYFTNRALCYLK-----------LKQYVHCCDDCRKALELEPS--LVKAQFFLGQALHEI-----NHYDEAVKHL 105 (253)
Q Consensus 44 ~p~~~~~~~~~a~~~~~-----------~~~~~~A~~~~~~al~l~p~--~~~a~~~lg~~~~~~-----~~~~~A~~~~ 105 (253)
+|.++.+++..|..... ++....|...+++|+++||+ +..+|..+|..|... |+.+.|.++|
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f 227 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF 227 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence 56667777777766654 22367899999999999999 677999999999996 9999999999
Q ss_pred HHHHhhchhc-ccc
Q psy11461 106 QRAYDLSREQ-NLN 118 (253)
Q Consensus 106 ~~al~l~p~~-~~~ 118 (253)
++|++++|+. ...
T Consensus 228 erAL~LnP~~~id~ 241 (301)
T 3u64_A 228 EHLTRYCSAHDPDH 241 (301)
T ss_dssp HHHHHHCCTTCSHH
T ss_pred HHHHHhCCCCCchH
Confidence 9999999974 443
No 215
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.20 E-value=1.1e-05 Score=67.16 Aligned_cols=103 Identities=8% Similarity=-0.156 Sum_probs=81.7
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC----CHHHHHHHH--HHHHHhh--CHHHHHHHHHHHHhhCCCcH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV----IPSYFTNRA--LCYLKLK--QYVHCCDDCRKALELEPSLV 82 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~----~~~~~~~~a--~~~~~~~--~~~~A~~~~~~al~l~p~~~ 82 (253)
+.....+...+.++.+.|+.+.|.+.+++....+|+ +-....+++ .+.+..| ++.+|...|+++....|++.
T Consensus 133 ~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~ 212 (310)
T 3mv2_B 133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK 212 (310)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH
T ss_pred cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc
Confidence 467788888999999999999999999999999883 223444454 4466667 99999999999998888733
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 83 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
.....++ ++..+|++++|...++.+++..|+
T Consensus 213 ~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 213 TQLGLLN-LHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp HHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred cHHHHHH-HHHHcCCHHHHHHHHHHHHHhccc
Confidence 3333333 899999999999999998888644
No 216
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.11 E-value=2e-06 Score=59.28 Aligned_cols=36 Identities=33% Similarity=0.519 Sum_probs=34.0
Q ss_pred CCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhcCccc
Q psy11461 216 HFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAY 251 (253)
Q Consensus 216 ~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n~wa~ 251 (253)
..+|+||++++..+|+||..||++|+.|+.+|+|+-
T Consensus 58 ~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~~ 93 (98)
T 1wgm_A 58 QTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQS 93 (98)
T ss_dssp CBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTCS
T ss_pred CCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchhh
Confidence 479999999999999999999999999999999973
No 217
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.10 E-value=2.4e-05 Score=58.60 Aligned_cols=96 Identities=11% Similarity=0.099 Sum_probs=78.0
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC---C
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP---------SYFTNRALCYLKLKQYVHCCDDCRKALELEP---S 80 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p---~ 80 (253)
....++.....++..|.|+.|+-.+..++....+++ .++..+|.+++..++|..|...|++|+.+.. .
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 345688999999999999999999999877643322 3788999999999999999999999976521 1
Q ss_pred c----------------------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy11461 81 L----------------------VKAQFFLGQALHEINHYDEAVKHLQRA 108 (253)
Q Consensus 81 ~----------------------~~a~~~lg~~~~~~~~~~~A~~~~~~a 108 (253)
+ ....|.+|.|+.+++++.+|+..++..
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1 257799999999999999999987753
No 218
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.05 E-value=3.4e-06 Score=73.48 Aligned_cols=88 Identities=22% Similarity=0.337 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHH-----
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLG----- 89 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg----- 89 (253)
.+|..+|..++..|+|++|+.+|.++ ..|..+|.|+.++|+|++|++.++++ ++++.|...+
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD 189 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence 37888899999999999999999876 36888889999999999999888888 2444444433
Q ss_pred -------------------------HHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 90 -------------------------QALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 90 -------------------------~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.+|...|.+++|+.++++++.+++..
T Consensus 190 ~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah 240 (449)
T 1b89_A 190 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH 240 (449)
T ss_dssp TTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred cCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence 45555666666666666666666443
No 219
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.05 E-value=1.2e-05 Score=70.10 Aligned_cols=96 Identities=13% Similarity=0.104 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCC---------------------------CCHHHHHHHHHHHHHhhCHHHHH
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNP---------------------------VIPSYFTNRALCYLKLKQYVHCC 68 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p---------------------------~~~~~~~~~a~~~~~~~~~~~A~ 68 (253)
.|..+|.++++.|+|++|+++|.++. +| .++.-...+..+|.+.|+|++|+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHH
Confidence 46678999999999999999999982 22 12222333457888999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhhch
Q psy11461 69 DDCRKALELEPSLVKAQFFLGQALHEI--NHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 69 ~~~~~al~l~p~~~~a~~~lg~~~~~~--~~~~~A~~~~~~al~l~p 113 (253)
..+++++.+++.+...+..+|.++.+- ++..+.++.|...+.+.|
T Consensus 228 ~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 228 TMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 999999999999999999999988664 577788887776655443
No 220
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.00 E-value=4.3e-05 Score=54.73 Aligned_cols=81 Identities=17% Similarity=0.113 Sum_probs=70.6
Q ss_pred cccHHHHHHHHHHHHhccCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEE---AINCYTRAIIKN-P-VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ 85 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~---A~~~y~~ai~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 85 (253)
+....+-|++|.++.+...... +|..+...+..+ | ..-.+.+.+|..++++|+|.+|...++.+++++|+|..|.
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 3567889999999999888877 999999998876 5 4667999999999999999999999999999999999887
Q ss_pred HHHHHH
Q psy11461 86 FFLGQA 91 (253)
Q Consensus 86 ~~lg~~ 91 (253)
.....+
T Consensus 112 ~Lk~~i 117 (126)
T 1nzn_A 112 ELERLI 117 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 221
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.89 E-value=0.00025 Score=65.50 Aligned_cols=102 Identities=9% Similarity=-0.055 Sum_probs=88.9
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC----------
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAI-NCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE---------- 78 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~-~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---------- 78 (253)
.|..+..|+..+..+...|+.++|. ..|.+|+...|.+..+|...+......|+++.|...|++++..-
T Consensus 339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 4567888999999999999999997 99999999999999999999999999999999999999998752
Q ss_pred -CC-----------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 79 -PS-----------LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 79 -p~-----------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
|. ...+|...+......|..+.|...|.+|++.
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 43 3457777888888889999999999999987
No 222
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.85 E-value=0.00041 Score=51.01 Aligned_cols=106 Identities=11% Similarity=-0.046 Sum_probs=90.3
Q ss_pred CCcccHHHHHHHHHHHHhccCH------HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQY------EEAINCYTRAIIKNPV--------IPSYFTNRALCYLKLKQYVHCCDDCRKA 74 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~------~~A~~~y~~ai~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (253)
..|.+.+.|.......-+.|+. +.-++.|++|+..-|. ...+|...|.. ...++.++|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 4567788888888888888998 8899999999998774 23466666754 6779999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 75 l~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+.++....+.|...|+--..+|+...|.+.+.+|+.++|..
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 99988898999999999999999999999999999999875
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.83 E-value=0.00014 Score=61.83 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=69.7
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 40 AIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 40 ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
++..+|.++.++.-+|.++...|++++|+..+++|+.++| +..+|..+|.++...|++++|++.|.+|++++|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 3466899999999999999999999999999999999997 467889999999999999999999999999999863
No 224
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.81 E-value=0.0005 Score=49.43 Aligned_cols=71 Identities=11% Similarity=0.065 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHhhC---HHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhcc
Q psy11461 46 VIPSYFTNRALCYLKLKQ---YVHCCDDCRKALELEPS-LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116 (253)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 116 (253)
-++..-++.|.|+.+..+ ...++..+...+..+|. ....+|.+|..++.+|+|++|.++...++++.|++.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 467889999999998775 45789999999998884 578999999999999999999999999999999983
No 225
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.80 E-value=1.4e-05 Score=55.14 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhcC
Q psy11461 216 HFDPVTRVKLSADQLIPNFAMKEVVDNFLQEND 248 (253)
Q Consensus 216 ~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n~ 248 (253)
..+|+||+|++..+|+||..||++|+.|+.+|+
T Consensus 64 ~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 64 PTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp SBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 479999999999999999999999999999986
No 226
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.74 E-value=0.00047 Score=49.54 Aligned_cols=80 Identities=8% Similarity=-0.060 Sum_probs=68.4
Q ss_pred ccHHHHHHHHHHHHhccCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQY---EEAINCYTRAIIKNPV-IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~---~~A~~~y~~ai~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 87 (253)
..+.+-|++|.++.+..+. ..+|..+...+..+|. .-.+++.+|..++++|+|..|.++++.++++.|+|..|...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3567888999999887655 5799999999998884 57899999999999999999999999999999999988765
Q ss_pred HHHH
Q psy11461 88 LGQA 91 (253)
Q Consensus 88 lg~~ 91 (253)
...+
T Consensus 118 k~~I 121 (134)
T 3o48_A 118 KSMV 121 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 227
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.70 E-value=1.4e-05 Score=53.41 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=31.0
Q ss_pred CCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhcC
Q psy11461 216 HFDPVTRVKLSADQLIPNFAMKEVVDNFLQEND 248 (253)
Q Consensus 216 ~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n~ 248 (253)
..+|+||++++..+|+||..||++|+.|+.+|+
T Consensus 49 ~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 49 PTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp SBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 479999999999999999999999999998874
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.67 E-value=0.0022 Score=46.62 Aligned_cols=71 Identities=11% Similarity=0.061 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHHhhC---HHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 45 PVIPSYFTNRALCYLKLKQ---YVHCCDDCRKALELEPS-LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 45 p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.-++...+++|.|+.+..+ ..+++..++..+..+|. ....+|.+|..++.+|+|.+|.++....|+..|++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 4578899999999999775 45789999999998884 66789999999999999999999999999999998
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.65 E-value=0.00078 Score=49.05 Aligned_cols=80 Identities=8% Similarity=-0.058 Sum_probs=69.3
Q ss_pred cccHHHHHHHHHHHHhccCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQY---EEAINCYTRAIIKNPV-IPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~---~~A~~~y~~ai~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 86 (253)
......-|++|.++.+...- ..+|..++..+...|. .-.+++.+|..++++|+|.+|.++++..+++.|+|..|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45678889999999987765 4799999999998884 5679999999999999999999999999999999988876
Q ss_pred HHHH
Q psy11461 87 FLGQ 90 (253)
Q Consensus 87 ~lg~ 90 (253)
....
T Consensus 116 Lk~~ 119 (144)
T 1y8m_A 116 LKSM 119 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 230
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.57 E-value=0.0015 Score=60.22 Aligned_cols=108 Identities=10% Similarity=-0.057 Sum_probs=88.2
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHhhCHHHH
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK-----------NPV-----------IPSYFTNRALCYLKLKQYVHC 67 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-----------~p~-----------~~~~~~~~a~~~~~~~~~~~A 67 (253)
.|.....++..+......|+++.|...|.+++.. .|. .+.+|...+......|..+.|
T Consensus 374 ~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~A 453 (679)
T 4e6h_A 374 IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAAS 453 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHH
Confidence 3556777888999999999999999999999975 253 345788888888899999999
Q ss_pred HHHHHHHHhh-CCCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhchhccc
Q psy11461 68 CDDCRKALEL-EPSLVKAQFFLGQALHEIN-HYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 68 ~~~~~~al~l-~p~~~~a~~~lg~~~~~~~-~~~~A~~~~~~al~l~p~~~~ 117 (253)
...|.+|++. .+.....|...|..-...+ +++.|...|.++++..|+++.
T Consensus 454 R~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~ 505 (679)
T 4e6h_A 454 RKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGE 505 (679)
T ss_dssp HHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchH
Confidence 9999999987 4455677777777666665 489999999999999988744
No 231
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.42 E-value=5.6e-05 Score=71.00 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=32.3
Q ss_pred cCCCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhcC
Q psy11461 214 VGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQEND 248 (253)
Q Consensus 214 ~g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n~ 248 (253)
.+.+||+||+||+.++++||++||++|++|+.+|.
T Consensus 925 ~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 925 SDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp TCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCcccccccHHHHHHHHHHHHHHH
Confidence 45699999999999999999999999999998874
No 232
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.19 E-value=0.0026 Score=47.58 Aligned_cols=80 Identities=19% Similarity=0.136 Sum_probs=63.0
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC------CC-------------------CHHHHHHHHHHHHHhhCHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKN------PV-------------------IPSYFTNRALCYLKLKQYVH 66 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~------p~-------------------~~~~~~~~a~~~~~~~~~~~ 66 (253)
..++.+..+|+.+|..|+|..|...|++|+... +. +..+.+..|.||.+++++.+
T Consensus 61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~ 140 (167)
T 3ffl_A 61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD 140 (167)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence 456789999999999999999999999998661 11 12578899999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461 67 CCDDCRKALELEPSLVKAQFFLGQAL 92 (253)
Q Consensus 67 A~~~~~~al~l~p~~~~a~~~lg~~~ 92 (253)
|+..++.+- ....+++.-..||..|
T Consensus 141 Ai~~Le~Ip-~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 141 AIAILDGIP-SRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred HHHHHhcCC-chhcCHHHHHHHHHHh
Confidence 999886542 2235777777777665
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.97 E-value=0.017 Score=49.55 Aligned_cols=96 Identities=13% Similarity=-0.032 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCC--------C--H------------HHHHHHHHHHHHhhCHHHHHHHHHH
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPV--------I--P------------SYFTNRALCYLKLKQYVHCCDDCRK 73 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~--------~--~------------~~~~~~a~~~~~~~~~~~A~~~~~~ 73 (253)
.+...|......|+...|...+.+|+.+... . . .+...++.++...|++.+++..+..
T Consensus 117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~ 196 (388)
T 2ff4_A 117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA 196 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555666789999999999999988421 1 1 2344577888899999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 74 ALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 74 al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
++..+|-+-.++..+-.++...|+..+|++.|+++.+.
T Consensus 197 ~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 197 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887653
No 234
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.97 E-value=0.00047 Score=44.92 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=32.5
Q ss_pred CCCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhcCc
Q psy11461 215 GHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDW 249 (253)
Q Consensus 215 g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n~w 249 (253)
....|++|.+++...++||..|++.|+.|+.+|+.
T Consensus 43 ~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 43 HKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred cCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 45799999999999999999999999999999985
No 235
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.88 E-value=0.027 Score=45.49 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=58.8
Q ss_pred HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH
Q psy11461 22 NRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA 84 (253)
Q Consensus 22 ~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 84 (253)
..+++.|+.++|+......|+.+|.++.....+...+.-.|+|+.|..-++.+.+++|.....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 467899999999999999999999999999999999999999999999999999999986543
No 236
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.82 E-value=0.046 Score=48.36 Aligned_cols=103 Identities=10% Similarity=-0.113 Sum_probs=65.7
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---------------------------------
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALC--------------------------------- 57 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~--------------------------------- 57 (253)
|..+..|...+..+...|+.+.|...|.+|+.. |.+..++...+..
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 288 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL 288 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHH
Confidence 455788888888888899999999999999988 8876655544332
Q ss_pred -------HHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhchhc
Q psy11461 58 -------YLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEIN-HYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 58 -------~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~-~~~~A~~~~~~al~l~p~~ 115 (253)
..+.+..+.|...|.+| ...+.....|...|..-...+ +.+.|...|..+++..|+.
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~ 353 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS 353 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC
Confidence 11244556666666666 322223444444444444444 4666667777666665554
No 237
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.56 E-value=0.13 Score=45.68 Aligned_cols=100 Identities=12% Similarity=0.018 Sum_probs=78.3
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC-CcHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP-SLVKAQFFLGQ 90 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p-~~~~a~~~lg~ 90 (253)
+...|..+-..+.+.|++++|...|.+..... .-+...|..+-.+|.+.|++++|...+.+.....- -+...|..+-.
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 45567778888888999999999998877652 33677788888888899999999999988876432 25567777888
Q ss_pred HHHHhCCHHHHHHHHHHHHhhc
Q psy11461 91 ALHEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 91 ~~~~~~~~~~A~~~~~~al~l~ 112 (253)
++...|+.++|.+.|++..+..
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHhhCCCHHHHHHHHHHHHHhC
Confidence 8889999999999888876543
No 238
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.55 E-value=0.0012 Score=44.69 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=30.7
Q ss_pred CCCCCCCCCC---CCCCCCcCcHHHHHHHHHHhhhcC
Q psy11461 215 GHFDPVTRVK---LSADQLIPNFAMKEVVDNFLQEND 248 (253)
Q Consensus 215 g~~DP~tr~~---l~~~~l~pN~~lk~a~~~~l~~n~ 248 (253)
+..+|+|+.+ ++..+|+||..|+..|+.|+.+++
T Consensus 48 ~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~~ 84 (94)
T 2yu4_A 48 KAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKRH 84 (94)
T ss_dssp CBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTCC
T ss_pred CCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHhc
Confidence 4589998877 999999999999999999998875
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.011 Score=54.97 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy11461 50 YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108 (253)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 108 (253)
++..-+.-+...|+|+-|+..+++|+.+.|.....|+.|+.||..+|+|+.|+-.++.+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 45555777778999999999999999999999999999999999999999999777665
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.013 Score=54.54 Aligned_cols=61 Identities=16% Similarity=0.084 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (253)
+..+..++..+..+|+|+-|+.+.++|+..-|.....|..||.||..+|+|+.|+-.+..+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4467778999999999999999999999999999999999999999999999999877655
No 241
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.03 E-value=0.063 Score=47.51 Aligned_cols=79 Identities=15% Similarity=0.010 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE 94 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 94 (253)
.+..+|....-...+..|..+|.+|+.+.|.+...|+.+|.+....|+.-+|+-+|.+++....-.+.+.-++...+-.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 5667899888889999999999999999999999999999999999999999999999998877788888888877765
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.83 E-value=0.05 Score=39.97 Aligned_cols=70 Identities=17% Similarity=0.088 Sum_probs=55.7
Q ss_pred HhCCCCHHHHHHHHHHHHHhhCH------HHHHHHHHHHHhhCCC--------cHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy11461 42 IKNPVIPSYFTNRALCYLKLKQY------VHCCDDCRKALELEPS--------LVKAQFFLGQALHEINHYDEAVKHLQR 107 (253)
Q Consensus 42 ~~~p~~~~~~~~~a~~~~~~~~~------~~A~~~~~~al~l~p~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~ 107 (253)
-+.|.+++.|.+.....-+.|+. +..+..|++|+..-|- .+..|.+.|.. ...++.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 46799999999999999999999 9999999999987664 23445555544 567999999999999
Q ss_pred HHhhc
Q psy11461 108 AYDLS 112 (253)
Q Consensus 108 al~l~ 112 (253)
++.++
T Consensus 86 a~~~h 90 (161)
T 4h7y_A 86 ARANC 90 (161)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 99983
No 243
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.83 E-value=0.12 Score=45.71 Aligned_cols=94 Identities=15% Similarity=-0.026 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK-QYVHCCDDCRKALELEPSLVKAQFFLGQAL 92 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 92 (253)
...|...+....+.+..+.|...|.+| ...+.....|...|..-...+ +++.|...++.+++..|+++..+...+...
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456778888888889999999999999 433345677877787777777 599999999999999999988888788888
Q ss_pred HHhCCHHHHHHHHHHH
Q psy11461 93 HEINHYDEAVKHLQRA 108 (253)
Q Consensus 93 ~~~~~~~~A~~~~~~a 108 (253)
...|+.+.|...|.++
T Consensus 365 ~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 365 LRIGDEENARALFKRL 380 (493)
T ss_dssp HHHTCHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHH
Confidence 8899999999999987
No 244
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.81 E-value=0.28 Score=36.85 Aligned_cols=92 Identities=20% Similarity=0.174 Sum_probs=71.5
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh--hC---------------CC
Q psy11461 18 KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE--LE---------------PS 80 (253)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~---------------p~ 80 (253)
..++..++-.|.|..|+-.+. .-+.....+-.+.||.++++|..|+.+++..+. .+ |.
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~ 111 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG 111 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred hhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence 346777888888887776554 335566777789999999999999999999983 22 33
Q ss_pred cHHH-HHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 81 LVKA-QFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 81 ~~~a-~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
+... +..+|.++...|+-++|+.++.......|-
T Consensus 112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 4343 455799999999999999999999887763
No 245
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.93 E-value=0.49 Score=40.48 Aligned_cols=93 Identities=12% Similarity=0.034 Sum_probs=73.3
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC---CCcH----HHH
Q psy11461 19 DEGNRYFGLRQYEEAINCYTRAIIKNPV------IPSYFTNRALCYLKLKQYVHCCDDCRKALELE---PSLV----KAQ 85 (253)
Q Consensus 19 ~~g~~~~~~g~~~~A~~~y~~ai~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---p~~~----~a~ 85 (253)
.+|..|+..|+|.+|...+.+....-.. ....+.....+|..++++.++...+.+|.... +..+ ...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 6899999999999999999998875221 23467778889999999999999998886542 1222 334
Q ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHhh
Q psy11461 86 FFLGQALH-EINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 86 ~~lg~~~~-~~~~~~~A~~~~~~al~l 111 (253)
..-|..+. ..++|..|...|-.+++-
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 55688888 899999999999999754
No 246
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.75 E-value=0.38 Score=38.77 Aligned_cols=59 Identities=15% Similarity=0.061 Sum_probs=56.0
Q ss_pred HHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 57 CYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 57 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
.+++.|..++|+..+...|+-+|.+......+.+.++-.|+++.|.+-++.+.+++|+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 45678999999999999999999999999999999999999999999999999999986
No 247
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.66 E-value=0.14 Score=45.24 Aligned_cols=64 Identities=13% Similarity=-0.082 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461 50 YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p 113 (253)
++..+|........+..|..+|.+|+.+.|++..++..+|.+....|+.-+|+-+|.+++....
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~ 217 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCC
Confidence 4556777777778899999999999999999999999999999999999999999999987543
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.57 Score=35.32 Aligned_cols=48 Identities=4% Similarity=-0.178 Sum_probs=33.0
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy11461 23 RYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75 (253)
Q Consensus 23 ~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 75 (253)
.....|+++.|.+..... ++...|..+|...+..|+++-|+.+|.++-
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 345667777777765543 456677777777777777777777776653
No 249
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.54 E-value=0.15 Score=44.28 Aligned_cols=99 Identities=10% Similarity=0.047 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC---CC-c--HHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV---IPSYFTNRALCYLKLKQYVHCCDDCRKALELE---PS-L--VKA 84 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---p~-~--~~a 84 (253)
...+..+|..++..|+++.|.++|.++...... -..++.....++...++|..+...+.++-.+. ++ . .+.
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 345678999999999999999999998876433 35688888899999999999999999986652 21 1 133
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461 85 QFFLGQALHEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 85 ~~~lg~~~~~~~~~~~A~~~~~~al~l~ 112 (253)
....|..+...++|.+|...|..++...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 4556777888999999999998887543
No 250
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=94.41 E-value=0.015 Score=35.78 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=18.7
Q ss_pred cCCCCCCCCCCCCCCCCcCcHHH
Q psy11461 214 VGHFDPVTRVKLSADQLIPNFAM 236 (253)
Q Consensus 214 ~g~~DP~tr~~l~~~~l~pN~~l 236 (253)
+| .||+|++||+.++|+||..-
T Consensus 38 ~~-~cP~t~~~L~~~~Lip~~~~ 59 (61)
T 2bay_A 38 TG-NDPITNEPLSIEEIVEIVPS 59 (61)
T ss_dssp HS-BCTTTCCBCCGGGCEECCCC
T ss_pred CC-CCcCCcCCCChhhcEECccC
Confidence 45 49999999999999999643
No 251
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=93.79 E-value=3.3 Score=36.47 Aligned_cols=85 Identities=9% Similarity=0.002 Sum_probs=70.6
Q ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhCCHHHHHHHH
Q psy11461 28 RQYEEAINCYTRAIIKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE-PSLVKAQFFLGQALHEINHYDEAVKHL 105 (253)
Q Consensus 28 g~~~~A~~~y~~ai~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~~~~~~A~~~~ 105 (253)
+..+.|.+.|.+..... +-+...|+.+-.+|.+.|++++|...+++..... .-+...|..+-.++...|+.++|.+.|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 44788999999877653 3367889999999999999999999999987653 236778888888999999999999999
Q ss_pred HHHHhhc
Q psy11461 106 QRAYDLS 112 (253)
Q Consensus 106 ~~al~l~ 112 (253)
....+.+
T Consensus 164 ~~M~~~G 170 (501)
T 4g26_A 164 AHMVESE 170 (501)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 9987653
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.47 E-value=0.37 Score=41.12 Aligned_cols=61 Identities=8% Similarity=0.064 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (253)
+...++..+...|++.+|+..+..++..+|-+-.++..+-.++...|+..+|+..|+++-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456778888999999999999999999999999999999999999999999999987654
No 253
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.29 E-value=0.22 Score=44.09 Aligned_cols=105 Identities=13% Similarity=-0.018 Sum_probs=61.2
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHH----------HHHHHHHh-----CC-CCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAIN----------CYTRAIIK-----NP-VIPSYFTNRALCYLKLKQYVHCCDDCRKA 74 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~----------~y~~ai~~-----~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (253)
.-.+..||..+..+-..|+...... .+-.++.. |+ ..+.+++.+-..|+..+.|+.|.....++
T Consensus 178 ~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 178 LINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp -------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3455666666666666666554321 22222222 22 23567888899999999999999999999
Q ss_pred HhhCCCc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 75 LELEPSL-------VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 75 l~l~p~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
. .|.+ ...+|++|.++...++|.+|.+++..|++.+|.+..
T Consensus 258 ~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 258 E--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp C--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred c--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 5 3322 456788999999999999999999999999987643
No 254
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=92.71 E-value=2.4 Score=31.85 Aligned_cols=69 Identities=9% Similarity=-0.081 Sum_probs=56.1
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----------------CCCCHH-HHHHHHHHHHHhhCHHHHHHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIK-----------------NPVIPS-YFTNRALCYLKLKQYVHCCDDCRK 73 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-----------------~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~ 73 (253)
..+.+.+-.+-++.+.++|..|+.+++..+.- +|.+-. ++..+|..+.+.|+-++|+..+..
T Consensus 60 NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 60 NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 45677788889999999999999999999832 334444 466679999999999999999998
Q ss_pred HHhhCCC
Q psy11461 74 ALELEPS 80 (253)
Q Consensus 74 al~l~p~ 80 (253)
....+|-
T Consensus 140 Sf~~~~l 146 (242)
T 3kae_A 140 SFGKSFL 146 (242)
T ss_dssp HHHHCCC
T ss_pred hcCCccc
Confidence 8877653
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.66 E-value=3.1 Score=36.11 Aligned_cols=100 Identities=15% Similarity=0.089 Sum_probs=78.0
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHh---hCCCc--
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIK-NPV-----IPSYFTNRALCYLKLKQYVHCCDDCRKALE---LEPSL-- 81 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---l~p~~-- 81 (253)
.+.....++..+...|+|.+|...+.....- ... -..++..-...|...++|..|...++++-. -.+..
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 5667788999999999999999999887543 111 135777888999999999999999998742 12222
Q ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461 82 --VKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 82 --~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 112 (253)
...+...|..+...++|.+|..+|..++...
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 2345667888999999999999999998753
No 256
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.52 E-value=3.3 Score=39.96 Aligned_cols=97 Identities=6% Similarity=-0.117 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC-CCcHHHHHHHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIK----NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE-PSLVKAQFFLG 89 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~lg 89 (253)
..+..+-+.|.+.|+.++|...+...... ..-+...|+.+-..|.+.|++++|...+++..... .-|...|..+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 35778888999999999999999765432 34567889999999999999999999999987643 22666777777
Q ss_pred HHHHHhCC-HHHHHHHHHHHHhh
Q psy11461 90 QALHEINH-YDEAVKHLQRAYDL 111 (253)
Q Consensus 90 ~~~~~~~~-~~~A~~~~~~al~l 111 (253)
.++...|+ .++|.+.|+...+.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHc
Confidence 78888887 46787777665543
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.26 E-value=0.39 Score=46.98 Aligned_cols=94 Identities=10% Similarity=0.103 Sum_probs=73.3
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHhhCHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIK-----------------------NPVIPSYFTNRALCYLKLKQYVHCCD 69 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~-----------------------~p~~~~~~~~~a~~~~~~~~~~~A~~ 69 (253)
++..-+.+|.+++..|++++|..+|.+|... ....+.+|......+.+.+.++.+++
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455688999999999999999999887321 11234678888888889999999999
Q ss_pred HHHHHHhhCCC-cH----HHHHHHHHHHHHhCCHHHHHHHHH
Q psy11461 70 DCRKALELEPS-LV----KAQFFLGQALHEINHYDEAVKHLQ 106 (253)
Q Consensus 70 ~~~~al~l~p~-~~----~a~~~lg~~~~~~~~~~~A~~~~~ 106 (253)
..+.|+...+. +. ..|.++-..+..+|+|++|...+.
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 99999986543 22 246777888999999999977664
No 258
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=92.24 E-value=0.11 Score=34.45 Aligned_cols=35 Identities=31% Similarity=0.461 Sum_probs=31.5
Q ss_pred CCCCCCCCCC-CCCCCcCcHHHHHHHHHHhhhcCcc
Q psy11461 216 HFDPVTRVKL-SADQLIPNFAMKEVVDNFLQENDWA 250 (253)
Q Consensus 216 ~~DP~tr~~l-~~~~l~pN~~lk~a~~~~l~~n~wa 250 (253)
..-|+.|.++ ....+.||..|++.|+.|...+++.
T Consensus 51 ~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 86 (92)
T 3ztg_A 51 HTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT 86 (92)
T ss_dssp CCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred CcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence 4689999997 6789999999999999999998875
No 259
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.33 E-value=2 Score=39.48 Aligned_cols=46 Identities=11% Similarity=0.006 Sum_probs=26.4
Q ss_pred HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy11461 24 YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74 (253)
Q Consensus 24 ~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 74 (253)
+...|+++.|.+..... + +...|.++|..+.+.++++.|+.+|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~---~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE---S--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC---C--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh---C--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44556666666654432 2 1345666666666666666666666553
No 260
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.29 E-value=1.3 Score=40.90 Aligned_cols=75 Identities=21% Similarity=0.079 Sum_probs=54.8
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCC
Q psy11461 18 KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINH 97 (253)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~ 97 (253)
......+-..|.++.|+...+ ++...+ ...+..|+++.|.+.++ ..++...|..+|..+...++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC
Confidence 445556667788787776552 233333 34467899999988763 23677899999999999999
Q ss_pred HHHHHHHHHHH
Q psy11461 98 YDEAVKHLQRA 108 (253)
Q Consensus 98 ~~~A~~~~~~a 108 (253)
++.|+.+|.++
T Consensus 697 ~~~A~~~y~~~ 707 (814)
T 3mkq_A 697 FKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999999885
No 261
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=90.91 E-value=0.39 Score=31.77 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=22.6
Q ss_pred CCCCCcccHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy11461 6 NFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAI 41 (253)
Q Consensus 6 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai 41 (253)
|....-..|..+-..+..+.+.|+|++||++..+|.
T Consensus 7 ~~~spLn~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 7 GMEGPLNLAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccchhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 333334456666667777777777777777666654
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.90 E-value=8.2 Score=32.10 Aligned_cols=92 Identities=15% Similarity=0.115 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHh---C----------------------CCCHHHHHHHHHHHHHhhC------
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIK---N----------------------PVIPSYFTNRALCYLKLKQ------ 63 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~---~----------------------p~~~~~~~~~a~~~~~~~~------ 63 (253)
+.+..+++.|.++++|++|++.+...... . |-+......+..++.....
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~ 115 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRK 115 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHH
Confidence 45667888888999999999875443322 1 1111222222222222211
Q ss_pred --HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy11461 64 --YVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQ 106 (253)
Q Consensus 64 --~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~ 106 (253)
..+|+.|..+.-...-.++..+..+|..++..+++.+|...|-
T Consensus 116 ~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 116 RFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 2233333333111122367788999999999999999988874
No 263
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=88.60 E-value=0.17 Score=33.93 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=15.3
Q ss_pred cCCCCCCCCCCCCCCCCc
Q psy11461 214 VGHFDPVTRVKLSADQLI 231 (253)
Q Consensus 214 ~g~~DP~tr~~l~~~~l~ 231 (253)
-|..+|+||||+++++++
T Consensus 66 ~~~~HPLSREpit~sMIv 83 (102)
T 2kkx_A 66 EGLPHPLTREPITASIIV 83 (102)
T ss_dssp HTCCCTTTCCCCCTTTEE
T ss_pred cCCCCCCccCCCCHhhEe
Confidence 456799999999999875
No 264
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.49 E-value=2.8 Score=38.06 Aligned_cols=90 Identities=14% Similarity=0.033 Sum_probs=62.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHH
Q psy11461 20 EGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYD 99 (253)
Q Consensus 20 ~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~ 99 (253)
+|..++..+...++...+.+..... .+....--++..-++.|+|..|..++.+.-.-.....+..|.+|.++..+|+.+
T Consensus 258 ia~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~ 336 (618)
T 1qsa_A 258 VAWRLMGNDVTDEQAKWRDDAIMRS-QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREA 336 (618)
T ss_dssp HHHTSCSTTCCHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCChHHHHHHHhccccC-CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHH
Confidence 3434444453445566666655433 333333344444557799999999998765544456888999999999999999
Q ss_pred HHHHHHHHHHh
Q psy11461 100 EAVKHLQRAYD 110 (253)
Q Consensus 100 ~A~~~~~~al~ 110 (253)
+|...|.++..
T Consensus 337 ~a~~~~~~~a~ 347 (618)
T 1qsa_A 337 EAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999998875
No 265
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=87.18 E-value=2.8 Score=36.51 Aligned_cols=88 Identities=8% Similarity=0.081 Sum_probs=63.2
Q ss_pred cCHHHHHHHHHHHHHhCCC-------CH---------HHHHHHHHHHHHhhCHHHHHHHHHHHHhhC--------CC--c
Q psy11461 28 RQYEEAINCYTRAIIKNPV-------IP---------SYFTNRALCYLKLKQYVHCCDDCRKALELE--------PS--L 81 (253)
Q Consensus 28 g~~~~A~~~y~~ai~~~p~-------~~---------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--------p~--~ 81 (253)
...+.|.....++....-. .. .+..++-.+|+++++..-|...++..-... |. -
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 3446667777777765211 10 235567789999999988888775442222 21 2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-chhc
Q psy11461 82 VKAQFFLGQALHEINHYDEAVKHLQRAYDL-SREQ 115 (253)
Q Consensus 82 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l-~p~~ 115 (253)
+..+|.+|..+...++|.+|.+.+..|++. +|.+
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 456899999999999999999999999999 8865
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.94 E-value=10 Score=31.18 Aligned_cols=27 Identities=19% Similarity=0.020 Sum_probs=23.8
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy11461 80 SLVKAQFFLGQALHEINHYDEAVKHLQ 106 (253)
Q Consensus 80 ~~~~a~~~lg~~~~~~~~~~~A~~~~~ 106 (253)
.++..|..+|..++..|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 367789999999999999999998876
No 267
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=86.80 E-value=6.1 Score=29.64 Aligned_cols=44 Identities=14% Similarity=-0.097 Sum_probs=22.5
Q ss_pred HhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy11461 60 KLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108 (253)
Q Consensus 60 ~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 108 (253)
+.|+++.|...++.. ++...|..+|......|+++-|+.+|.++
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 345555555554433 34445555555555555555555555543
No 268
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=83.88 E-value=17 Score=34.76 Aligned_cols=92 Identities=22% Similarity=0.155 Sum_probs=66.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh-hCC-------------------
Q psy11461 20 EGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE-LEP------------------- 79 (253)
Q Consensus 20 ~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-l~p------------------- 79 (253)
+...+...|.++-|.+ .+...|.++..-+-+|.+|+..|++++|..+|.+|-. +..
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 5667777888775543 5567788888888999999999999999999987642 211
Q ss_pred -C--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 80 -S--LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 80 -~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
+ ....|.....++-..+-++-++...+.|+.....+
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~d 930 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD 930 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSC
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC
Confidence 1 11244555666677788888999999998765433
No 269
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=83.41 E-value=1.4 Score=30.73 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=19.7
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAII 42 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~ 42 (253)
...+..+...|...=..|+|.+|+.+|..++.
T Consensus 15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34555556666666666666666666666654
No 270
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=83.29 E-value=3.4 Score=26.11 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=25.6
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHH
Q psy11461 18 KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSY 50 (253)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~ 50 (253)
..+|..+...|++++|+.++.+|+...|.-..+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 347888888888888888888888887775444
No 271
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=82.75 E-value=2.8 Score=32.20 Aligned_cols=53 Identities=9% Similarity=-0.051 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHH-----HHHHHHHHHHhCCHHH
Q psy11461 48 PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKA-----QFFLGQALHEINHYDE 100 (253)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a-----~~~lg~~~~~~~~~~~ 100 (253)
..+.+-+|..+...++|.+|..++..|+...|..... +..+--+..-+|+...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~ 71 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT 71 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4577788999999999999999999999887765322 3333344455676543
No 272
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.31 E-value=10 Score=37.05 Aligned_cols=94 Identities=20% Similarity=0.134 Sum_probs=68.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh-CC-------------------
Q psy11461 20 EGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL-EP------------------- 79 (253)
Q Consensus 20 ~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-~p------------------- 79 (253)
+...+...|.++.+.+ .+...|.++...+.+|.+++..|++++|..+|.+|-.- ..
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 4455666777766544 34567888888899999999999999999999887321 00
Q ss_pred ---CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchhccc
Q psy11461 80 ---SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117 (253)
Q Consensus 80 ---~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~ 117 (253)
.-...|+.....+-..+.++.+++..+.|++..+.+..
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~ 934 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 934 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCCh
Confidence 11234556666777789999999999999988665433
No 273
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=82.04 E-value=7.6 Score=25.08 Aligned_cols=32 Identities=22% Similarity=0.095 Sum_probs=24.5
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIK 43 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~ 43 (253)
..+..+...|..+=+.|+|.+|+.+|..++..
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35566777787888888888888888888764
No 274
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=82.02 E-value=7.4 Score=28.14 Aligned_cols=83 Identities=12% Similarity=0.087 Sum_probs=56.4
Q ss_pred hccCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q psy11461 26 GLRQYEEAINCYTRAIIKNPVIPSYFTNRA-LCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKH 104 (253)
Q Consensus 26 ~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a-~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~ 104 (253)
.-|+...-+.+|-+. ..+.. |..+| ..+..+|+-++-.+.+...+.-.+-++..++.+|.+|...|+..+|-+.
T Consensus 73 ~C~NlKrVi~C~~~~----n~~se-~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 73 KCQNLKSVVECGVIN----NTLNE-HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp GCSCTHHHHHHHHHT----TCCCH-HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhcHHHHHHHHHHh----cchHH-HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 456666777777643 22223 33444 3455677777777777666666667788999999999999999999999
Q ss_pred HHHHHhhch
Q psy11461 105 LQRAYDLSR 113 (253)
Q Consensus 105 ~~~al~l~p 113 (253)
+.+|-+.+-
T Consensus 148 l~~AC~kG~ 156 (172)
T 1wy6_A 148 LIEACKKGE 156 (172)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhhh
Confidence 888877643
No 275
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=81.77 E-value=0.66 Score=30.05 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=16.0
Q ss_pred HHHHHHHHhhhcCcccC
Q psy11461 236 MKEVVDNFLQENDWAYE 252 (253)
Q Consensus 236 lk~a~~~~l~~n~wa~~ 252 (253)
||.+|..||.++||+|+
T Consensus 54 Lk~~V~~~L~~~~~~~~ 70 (82)
T 3fau_A 54 IKPAVIKYLISHSFRFS 70 (82)
T ss_dssp HHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHhCCCcee
Confidence 99999999999999984
No 276
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.59 E-value=12 Score=31.79 Aligned_cols=99 Identities=13% Similarity=0.092 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh----------------------CCCCH--------------------H--
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIK----------------------NPVIP--------------------S-- 49 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~----------------------~p~~~--------------------~-- 49 (253)
-.+...+|..|...|++++-.+++...... -|.+. .
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999998888877554221 12211 1
Q ss_pred --HHHHHHHHHHHhhCHHHHHHHHHHHHhh----CCC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461 50 --YFTNRALCYLKLKQYVHCCDDCRKALEL----EPS--LVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 50 --~~~~~a~~~~~~~~~~~A~~~~~~al~l----~p~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 112 (253)
+-..+|..|+..|+|.+|...+.+...- |.. -...+..-...|..++++..+...+.+|....
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 1236799999999999998888887763 221 23456667788999999999999999988765
No 277
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=80.41 E-value=2.6 Score=27.39 Aligned_cols=32 Identities=25% Similarity=0.193 Sum_probs=20.3
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAII 42 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~ 42 (253)
-..+..+...|...-..|+|++|+.+|..++.
T Consensus 10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666666666666777777776666654
No 278
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.13 E-value=3.6 Score=36.40 Aligned_cols=70 Identities=11% Similarity=0.061 Sum_probs=58.8
Q ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCc
Q psy11461 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI-------PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL 81 (253)
Q Consensus 10 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 81 (253)
....+..+..+-..|...+.|++|..+..++. .|.+ ..+++..|.++.-+++|.+|..++..|+...|.+
T Consensus 227 ~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 227 NETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred cchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 34557777888889999999999999999985 4532 4678888999999999999999999999987754
No 279
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=79.86 E-value=1.5 Score=30.65 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=28.6
Q ss_pred CCCCCCCCCCCC-CCCcCcHHHHHHHHHHhhhc
Q psy11461 216 HFDPVTRVKLSA-DQLIPNFAMKEVVDNFLQEN 247 (253)
Q Consensus 216 ~~DP~tr~~l~~-~~l~pN~~lk~a~~~~l~~n 247 (253)
..-|+-|.+++. ..+.||..|++.++.|+-..
T Consensus 88 ~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~ 120 (124)
T 3fl2_A 88 FSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGY 120 (124)
T ss_dssp CBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTT
T ss_pred CCCCCCCccCCCCCCCCCCHHHHHHHHHHcccc
Confidence 479999999988 78999999999999998654
No 280
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=79.44 E-value=7.8 Score=25.21 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=14.6
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 89 GQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 89 g~~~~~~~~~~~A~~~~~~al~l 111 (253)
|.-.-..|+|++|+.+|..+++.
T Consensus 23 Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 23 AVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 33345567777777777776654
No 281
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=78.68 E-value=11 Score=24.31 Aligned_cols=32 Identities=19% Similarity=0.068 Sum_probs=23.7
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIK 43 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~ 43 (253)
..+..+...|...=+.|+|.+|+.+|..++..
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566777777777888888888888877764
No 282
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=78.15 E-value=2.4 Score=27.75 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=20.4
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIK 43 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~ 43 (253)
..+..+...|...-..|+|++|+.+|..++..
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555666666666677777777777666643
No 283
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.23 E-value=9 Score=36.65 Aligned_cols=71 Identities=10% Similarity=0.123 Sum_probs=54.9
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---------------------CCC--CHHHHHHHHHHHHHhhCHHHHH
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIK---------------------NPV--IPSYFTNRALCYLKLKQYVHCC 68 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~---------------------~p~--~~~~~~~~a~~~~~~~~~~~A~ 68 (253)
.++..-|.+|..+...|++++|..+|.+|-.- .+. ...+|...+..+.+.+.++-++
T Consensus 838 ~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi 917 (950)
T 4gq2_M 838 SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 917 (950)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHH
Confidence 34555688999999999999999999886421 001 2247888899999999999999
Q ss_pred HHHHHHHhh-CCCcH
Q psy11461 69 DDCRKALEL-EPSLV 82 (253)
Q Consensus 69 ~~~~~al~l-~p~~~ 82 (253)
..++.||.. .+++.
T Consensus 918 ~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 918 EFSLLADASKETDDE 932 (950)
T ss_dssp HHHHHHHHTCCSCCH
T ss_pred HHHHHHHhhcccCCc
Confidence 999999974 44444
No 284
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=76.84 E-value=1.8 Score=31.50 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCC-CCcCcHHHHHHHHHHhhh
Q psy11461 217 FDPVTRVKLSAD-QLIPNFAMKEVVDNFLQE 246 (253)
Q Consensus 217 ~DP~tr~~l~~~-~l~pN~~lk~a~~~~l~~ 246 (253)
.-|+.|.++... .+.||..|+++++.|+..
T Consensus 115 ~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 115 SCPACRHDLGQNYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp BCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred cCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence 579999999988 999999999999999853
No 285
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=76.27 E-value=7.3 Score=35.63 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=27.2
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q psy11461 17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK 62 (253)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~ 62 (253)
....|..++..|+|.-|.+....++..+|++..+...+|.+|.++|
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4445555566666666666666666666666666666665555544
No 286
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=74.86 E-value=5.5 Score=26.28 Aligned_cols=27 Identities=26% Similarity=0.146 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy11461 49 SYFTNRALCYLKLKQYVHCCDDCRKAL 75 (253)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~al 75 (253)
..+..+|..+.+.|+|++||.+..+|.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 456667777777777777777666554
No 287
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=74.11 E-value=1.7 Score=28.99 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=28.5
Q ss_pred CCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhc
Q psy11461 216 HFDPVTRVKLSADQLIPNFAMKEVVDNFLQEN 247 (253)
Q Consensus 216 ~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n 247 (253)
..=|+-|.++....+.||..|++.++.|....
T Consensus 58 ~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 58 TQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp CBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999997654
No 288
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=72.84 E-value=7.6 Score=25.84 Aligned_cols=28 Identities=21% Similarity=0.308 Sum_probs=23.3
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCCC
Q psy11461 19 DEGNRYFGLRQYEEAINCYTRAIIKNPV 46 (253)
Q Consensus 19 ~~g~~~~~~g~~~~A~~~y~~ai~~~p~ 46 (253)
.+|..+...|+++.|+.+|.+|+...|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4788888888888898888888888765
No 289
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=72.40 E-value=5.5 Score=25.14 Aligned_cols=30 Identities=27% Similarity=0.467 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 86 FFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 86 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
..+|..+...|++++|...|-+|+..+|.-
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 347999999999999999999999999874
No 290
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=71.58 E-value=7.8 Score=29.65 Aligned_cols=39 Identities=8% Similarity=-0.120 Sum_probs=34.2
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS 49 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~ 49 (253)
...+.-.+-+|..++.+++|.+|.+.+..|+...|....
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~ 49 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQ 49 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHH
Confidence 445678889999999999999999999999999887653
No 291
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=70.58 E-value=4.4 Score=27.84 Aligned_cols=30 Identities=13% Similarity=-0.022 Sum_probs=26.6
Q ss_pred CCCCCCCCCCCCCCcCcHHHHHHHHHHhhh
Q psy11461 217 FDPVTRVKLSADQLIPNFAMKEVVDNFLQE 246 (253)
Q Consensus 217 ~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~ 246 (253)
.=|+-|.++....+.||..|++.++.|...
T Consensus 57 ~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 57 GCPVCYTPAWIQDLKINRQLDSMIQLCSKL 86 (117)
T ss_dssp BCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred CCcCCCCcCccccccccHHHHHHHHHHHHH
Confidence 479999999999999999999999988653
No 292
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=69.31 E-value=29 Score=25.42 Aligned_cols=31 Identities=13% Similarity=0.302 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCC
Q psy11461 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPV 46 (253)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~ 46 (253)
.-+..|..+|..|+|=+|-+.+..+-...+.
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~ 64 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGR 64 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCC
Confidence 4466777777778888777777776655443
No 293
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.31 E-value=13 Score=31.96 Aligned_cols=68 Identities=9% Similarity=0.019 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 47 IPSYFTNRALCYLKLKQYVHCCDDCRKALELEP---SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p---~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
...++..+|..|...|++++|.+.+.++..... .-...++..-.++...+++..+...+.++..+-..
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~ 200 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK 200 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc
Confidence 445788999999999999999999999876532 34577888888899999999999999999877543
No 294
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=68.96 E-value=2.5 Score=28.17 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhhcCccc
Q psy11461 235 AMKEVVDNFLQENDWAY 251 (253)
Q Consensus 235 ~lk~a~~~~l~~n~wa~ 251 (253)
.||.+|..||.++||+|
T Consensus 61 ~Lk~~V~~~L~~~~~~~ 77 (96)
T 2d9i_A 61 RIKPAVIKYLISHSFRF 77 (96)
T ss_dssp CHHHHHHHHHHHTTCCE
T ss_pred hHHHHHHHHHhhCCCcc
Confidence 69999999999999987
No 295
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=68.55 E-value=8.3 Score=25.45 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=16.7
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYTRAII 42 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~ 42 (253)
.+..+...|...-..|+|.+|+.+|..++.
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555556666666665555544
No 296
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=68.23 E-value=31 Score=24.93 Aligned_cols=61 Identities=8% Similarity=-0.099 Sum_probs=49.3
Q ss_pred HHHHHH-HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461 17 LKDEGN-RYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77 (253)
Q Consensus 17 ~~~~g~-~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (253)
+..+|. .+..+|+-++-.+.+...+.-.+-++.+...+|.+|.+.|+..+|...+.+|-+-
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 455554 4467888888888888877777778999999999999999999999999998764
No 297
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=65.27 E-value=15 Score=24.01 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=21.4
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIK 43 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~ 43 (253)
..++.+...|..+++.++|.+|...+.++...
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 34556666677777777777777777776644
No 298
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=63.91 E-value=50 Score=25.70 Aligned_cols=63 Identities=14% Similarity=0.071 Sum_probs=31.8
Q ss_pred HHHHHHHHHHH-----HhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH-hhCHHHHHHHHHHHHh
Q psy11461 14 DKELKDEGNRY-----FGLRQYEEAINCYTRAIIK--------NPVIPSYFTNRALCYLK-LKQYVHCCDDCRKALE 76 (253)
Q Consensus 14 a~~~~~~g~~~-----~~~g~~~~A~~~y~~ai~~--------~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~ 76 (253)
...++..|..| +..|+-+.|...|+.|..+ +|-...+..|.+..|+. +++.++|....++|+.
T Consensus 120 VFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 120 FFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33444555544 3455556666666666543 22222344444444332 4556666666666644
No 299
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=63.08 E-value=9 Score=25.48 Aligned_cols=30 Identities=27% Similarity=0.467 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhchhc
Q psy11461 86 FFLGQALHEINHYDEAVKHLQRAYDLSREQ 115 (253)
Q Consensus 86 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 115 (253)
..+|..+...|+++.|+.+|-+|+..+|.-
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 347999999999999999999999998873
No 300
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=60.92 E-value=31 Score=29.06 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=36.3
Q ss_pred HHHHHHHHHhh-----CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461 67 CCDDCRKALEL-----EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 67 A~~~~~~al~l-----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p 113 (253)
++..|.+||.. ....+..|..+|-.++..+++.+|++++..|-..-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~ 327 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAG 327 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHH
Confidence 55666666654 345677888999999999999999999998876543
No 301
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=60.24 E-value=31 Score=22.12 Aligned_cols=14 Identities=7% Similarity=-0.159 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhh
Q psy11461 64 YVHCCDDCRKALEL 77 (253)
Q Consensus 64 ~~~A~~~~~~al~l 77 (253)
.+.|+....+|++.
T Consensus 16 ~~~Ai~lv~~Ave~ 29 (83)
T 2w2u_A 16 EEMARKYAINAVKA 29 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555554
No 302
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=57.64 E-value=60 Score=31.53 Aligned_cols=63 Identities=11% Similarity=-0.102 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461 50 YFTNRALCYLKLKQYVHCCDDCRKALEL----EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 112 (253)
.|+.+-.+|.+.|+.++|...+...... -.-+...|..+-..++..|+.++|.+.|..-.+.+
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G 195 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 5888889999999999999999764432 23477889999999999999999999999887654
No 303
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=57.60 E-value=4.1 Score=27.52 Aligned_cols=29 Identities=14% Similarity=0.315 Sum_probs=26.6
Q ss_pred CCCCCCCCCCCCCCcCcHHHHHHHHHHhh
Q psy11461 217 FDPVTRVKLSADQLIPNFAMKEVVDNFLQ 245 (253)
Q Consensus 217 ~DP~tr~~l~~~~l~pN~~lk~a~~~~l~ 245 (253)
.=|+-|.+++...+.||..+.+.++.|+.
T Consensus 60 ~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 60 QCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp CCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred CCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 57999999999999999999999998884
No 304
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=56.87 E-value=17 Score=23.17 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIK 43 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~ 43 (253)
.-....+|+.+-..|+|+.|+.+|..++..
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 344556777777777888887777777654
No 305
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=52.99 E-value=42 Score=21.42 Aligned_cols=14 Identities=7% Similarity=-0.123 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhC
Q psy11461 65 VHCCDDCRKALELE 78 (253)
Q Consensus 65 ~~A~~~~~~al~l~ 78 (253)
+.|+....+|++.|
T Consensus 9 ~~Ai~lv~~Ave~D 22 (83)
T 2v6y_A 9 DMARKYAILAVKAD 22 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666543
No 306
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=51.70 E-value=51 Score=28.35 Aligned_cols=47 Identities=9% Similarity=0.025 Sum_probs=35.4
Q ss_pred HHHHHHHHHhh-----CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhch
Q psy11461 67 CCDDCRKALEL-----EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSR 113 (253)
Q Consensus 67 A~~~~~~al~l-----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p 113 (253)
++..|.+||.. ...++..|..+|-.++..+++.+|+.++..|-..-.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~ 349 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQ 349 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHH
Confidence 45555555543 345677888999999999999999999998876543
No 307
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=50.93 E-value=35 Score=31.12 Aligned_cols=48 Identities=15% Similarity=0.134 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCC
Q psy11461 50 YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINH 97 (253)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~ 97 (253)
....+|...+..|+|.-|...+..++..+|+|..+...++.+|.++|.
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 456678888889999999999999999999999999999999988874
No 308
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=48.84 E-value=7.6 Score=27.62 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhhcCccc
Q psy11461 235 AMKEVVDNFLQENDWAY 251 (253)
Q Consensus 235 ~lk~a~~~~l~~n~wa~ 251 (253)
.||.+|..||.++||+|
T Consensus 106 ~Lk~~V~~~L~~~~~~~ 122 (135)
T 2vkc_A 106 RIKPAVIKYLISHSFRF 122 (135)
T ss_dssp THHHHHHHHHHTTTCEE
T ss_pred hHHHHHHHHHhcCCCce
Confidence 59999999999999987
No 309
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=46.85 E-value=1.3 Score=27.91 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=20.9
Q ss_pred CCCCCCCCCCCCCCCcCcHHHHHHH
Q psy11461 216 HFDPVTRVKLSADQLIPNFAMKEVV 240 (253)
Q Consensus 216 ~~DP~tr~~l~~~~l~pN~~lk~a~ 240 (253)
..=|+-|.+++...+.||..|++.+
T Consensus 54 ~~CP~Cr~~~~~~~l~~n~~l~~lv 78 (79)
T 2egp_A 54 SSCPVCGISYSFEHLQANQHLANIV 78 (79)
T ss_dssp CCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred CcCCCCCCcCCHhhCCcCHHHHHhh
Confidence 4579999999999999999887543
No 310
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=45.23 E-value=57 Score=28.25 Aligned_cols=62 Identities=16% Similarity=0.030 Sum_probs=48.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh-CCCc
Q psy11461 20 EGNRYFGLRQYEEAINCYTRAIIKNP----------VIPSYFTNRALCYLKLKQYVHCCDDCRKALEL-EPSL 81 (253)
Q Consensus 20 ~g~~~~~~g~~~~A~~~y~~ai~~~p----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-~p~~ 81 (253)
+-..||+.++...|...++..-...+ .-+.+++-+|..+.-.++|.+|..++..|+.. .|.+
T Consensus 182 L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 182 LNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 34578899999998888865543322 12467888999999999999999999999998 7654
No 311
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=43.16 E-value=68 Score=27.93 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhCCC-----------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 64 YVHCCDDCRKALELEPS-----------LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 64 ~~~A~~~~~~al~l~p~-----------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
|+..+.++..|+.+-|. ..-|+..+|.+|+..++|++|+....+++..
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45677788888776543 2357888999999999999999999999853
No 312
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=42.97 E-value=85 Score=26.95 Aligned_cols=46 Identities=9% Similarity=0.015 Sum_probs=34.4
Q ss_pred HHHHHHHHHhh-----CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q psy11461 67 CCDDCRKALEL-----EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112 (253)
Q Consensus 67 A~~~~~~al~l-----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 112 (253)
++..|.+||.. .......|..+|-.++..+++.+|++++..|-..-
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi 333 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVI 333 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhh
Confidence 44555555553 23456788888999999999999999998886653
No 313
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=42.50 E-value=59 Score=27.42 Aligned_cols=64 Identities=14% Similarity=0.000 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHH--hccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461 13 SDKELKDEGNRYF--GLRQYEEAINCYTRAIIK-----NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76 (253)
Q Consensus 13 ~a~~~~~~g~~~~--~~g~~~~A~~~y~~ai~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (253)
.+.++-++|..-- -......++..|.+||.. ......-|..+|.++++.+++.+|+..+..|-.
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 3444555554332 222223378888888865 345566788899999999999999998877643
No 314
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=42.45 E-value=71 Score=27.46 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhhCCC--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 64 YVHCCDDCRKALELEPS--------LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 64 ~~~A~~~~~~al~l~p~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
|+..+.++..|+.+-|. ..-|+..+|.+++..|+|++|.....+++..
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 46678888888876553 2457888999999999999999999998864
No 315
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=42.16 E-value=58 Score=27.95 Aligned_cols=46 Identities=13% Similarity=-0.011 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461 31 EEAINCYTRAIIKNPV--------IPSYFTNRALCYLKLKQYVHCCDDCRKALE 76 (253)
Q Consensus 31 ~~A~~~y~~ai~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (253)
+..+..++.|+..-|. -..++..+|.+|+-+++|++|+..++++|.
T Consensus 165 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 165 DFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 3444445555554332 345788899999999999999999999885
No 316
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=41.80 E-value=9 Score=26.24 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=25.0
Q ss_pred CCCCCCCCCCCCCCcCcHHHHHHHHHHh
Q psy11461 217 FDPVTRVKLSADQLIPNFAMKEVVDNFL 244 (253)
Q Consensus 217 ~DP~tr~~l~~~~l~pN~~lk~a~~~~l 244 (253)
.=|+-|.+++..+++||..++..+..+.
T Consensus 55 ~CP~Cr~~~~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 55 KCPVDNEILLENQLFPDNFAKREILSLM 82 (118)
T ss_dssp BCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred CCCCCCCCcCHHhcccCHHHHHHHccce
Confidence 6899999999999999999999887653
No 317
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=47.82 E-value=5.5 Score=36.53 Aligned_cols=51 Identities=10% Similarity=0.010 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHH
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYV 65 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~ 65 (253)
......|..++..|+|.-|.+....++..+|++..+...+|.+|.++|.-.
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~ 512 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQT 512 (668)
Confidence 345556777788888888888888888888888888888888887777533
No 318
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=41.63 E-value=95 Score=28.02 Aligned_cols=55 Identities=7% Similarity=-0.045 Sum_probs=43.8
Q ss_pred HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461 22 NRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76 (253)
Q Consensus 22 ~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (253)
...++.|++..|...+...-......+...+-+|.++..+|+.++|...|.++..
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3456779999999998775543335677788889999999999999999988875
No 319
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=41.47 E-value=5.5 Score=31.74 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK 43 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~ 43 (253)
...|..+...|..+=+.|+|.+|+.+|..++..
T Consensus 20 ~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~ 52 (257)
T 2ymb_A 20 STAAATVLKRAVELDSESRYPQALVCYQEGIDL 52 (257)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345556677777777778888888887777764
No 320
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=41.45 E-value=66 Score=20.37 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 85 QFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 85 ~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
...+|.=+..+|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 455677788889999999999988754
No 321
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=41.39 E-value=15 Score=24.61 Aligned_cols=30 Identities=10% Similarity=0.386 Sum_probs=26.0
Q ss_pred CCCCCCCCCCCCC----CCcCcHHHHHHHHHHhh
Q psy11461 216 HFDPVTRVKLSAD----QLIPNFAMKEVVDNFLQ 245 (253)
Q Consensus 216 ~~DP~tr~~l~~~----~l~pN~~lk~a~~~~l~ 245 (253)
..=|+-|.++... .+.+|..|.+.++.|+.
T Consensus 51 ~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 51 KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred CcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 5689999999876 78999999999998875
No 322
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=41.18 E-value=77 Score=27.58 Aligned_cols=30 Identities=13% Similarity=-0.001 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461 48 PSYFTNRALCYLKLKQYVHCCDDCRKALEL 77 (253)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (253)
..++..+|.+|+-+++|++|+..+++++..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 458889999999999999999999999864
No 323
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=40.68 E-value=82 Score=27.00 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhCCC--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 64 YVHCCDDCRKALELEPS--------LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 64 ~~~A~~~~~~al~l~p~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
|+..+.+++.|+.+-|. ..-|+..+|.+++..|+|++|+....+++..
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 56678888888876553 3457888999999999999999999999864
No 324
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=40.60 E-value=1.2e+02 Score=23.08 Aligned_cols=79 Identities=10% Similarity=0.074 Sum_probs=54.1
Q ss_pred HHHHHHHHh---------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhCCHHHHHH
Q psy11461 35 NCYTRAIIK---------NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE--LEPSLVKAQFFLGQALHEINHYDEAVK 103 (253)
Q Consensus 35 ~~y~~ai~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~p~~~~a~~~lg~~~~~~~~~~~A~~ 103 (253)
..+.+++.. ||....+|...+.++ ..+...++...|..... +.-.....|-..|..+-..|++.+|..
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 567777765 333344566655554 12225577777776655 445566677777888999999999999
Q ss_pred HHHHHHhhchh
Q psy11461 104 HLQRAYDLSRE 114 (253)
Q Consensus 104 ~~~~al~l~p~ 114 (253)
.|+.+++....
T Consensus 137 Vy~~GI~~~A~ 147 (202)
T 3esl_A 137 LLELGAENNCR 147 (202)
T ss_dssp HHHHHHHTTCB
T ss_pred HHHHHHHcCCc
Confidence 99999987543
No 325
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=40.52 E-value=12 Score=24.17 Aligned_cols=22 Identities=18% Similarity=0.570 Sum_probs=16.5
Q ss_pred CcCcHHHHHHHHHHhhhcCcccC
Q psy11461 230 LIPNFAMKEVVDNFLQENDWAYE 252 (253)
Q Consensus 230 l~pN~~lk~a~~~~l~~n~wa~~ 252 (253)
-.||-.| +++.+||++.||-|+
T Consensus 62 ~~s~~eL-dk~t~wLD~rgWwYe 83 (85)
T 2l48_A 62 PTSDAQL-KAMKEYLDRKGWWYE 83 (85)
T ss_dssp CCCHHHH-HHHHHHHHHTTCCEE
T ss_pred CCCHHHH-HHHHHHHhccCceEE
Confidence 4466444 678899999999986
No 326
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=39.81 E-value=80 Score=21.95 Aligned_cols=33 Identities=15% Similarity=-0.030 Sum_probs=25.2
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK 43 (253)
Q Consensus 11 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~ 43 (253)
.+.|......|...+..|.|+.|.-...+|+..
T Consensus 13 ~~~A~~dL~~A~~~l~~g~y~~a~F~aqQA~Ek 45 (135)
T 1o3u_A 13 MDAAKDDLEHAKHDLEHGFYNWACFSSQQAAEK 45 (135)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 456777778888888899998888777777654
No 327
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=39.41 E-value=78 Score=20.61 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=9.0
Q ss_pred HhCCHHHHHHHHHHHHh
Q psy11461 94 EINHYDEAVKHLQRAYD 110 (253)
Q Consensus 94 ~~~~~~~A~~~~~~al~ 110 (253)
..|+|++|+.+|..+++
T Consensus 27 ~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 27 AESRYQQALVCYQEGID 43 (93)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 34555555555555544
No 328
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=39.36 E-value=60 Score=21.94 Aligned_cols=79 Identities=11% Similarity=-0.077 Sum_probs=47.2
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHH
Q psy11461 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDE 100 (253)
Q Consensus 21 g~~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~ 100 (253)
|-.---.-..++|...- ..+...+..-.+-.-|...+..+|+|++|....+..- .+..--.++.|-...|-.++
T Consensus 14 AL~gTG~H~HqEA~tIA-dwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~ 87 (116)
T 2p58_C 14 ALIGTGNHYHEEANCIA-EWLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGSA 87 (116)
T ss_dssp HHHHHTTTCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHHH
T ss_pred HHHHccchHHHHHHHHH-HHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHH
Confidence 33333344555655433 3344455533445556777788888988887664432 44444556777788888877
Q ss_pred HHHHH
Q psy11461 101 AVKHL 105 (253)
Q Consensus 101 A~~~~ 105 (253)
+..-+
T Consensus 88 le~rL 92 (116)
T 2p58_C 88 LESRL 92 (116)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76655
No 329
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=39.24 E-value=68 Score=27.58 Aligned_cols=45 Identities=7% Similarity=-0.001 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461 32 EAINCYTRAIIK-----NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76 (253)
Q Consensus 32 ~A~~~y~~ai~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (253)
.++..|.+||.. ......-|..+|-++++.+++.+|+..+..|-.
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 367778887765 344566788899999999999999988876643
No 330
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=39.23 E-value=87 Score=26.88 Aligned_cols=45 Identities=16% Similarity=0.028 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461 32 EAINCYTRAIIKNP--------VIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76 (253)
Q Consensus 32 ~A~~~y~~ai~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (253)
..+..++.|+..-| +-..++..+|.+|+-+++|++|+..++++|.
T Consensus 172 ~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 172 EIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34444555555433 2346888999999999999999999999986
No 331
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=38.14 E-value=1.7e+02 Score=24.05 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC----CH----HH--HH------HHHHHHHH-hhC-----HHHHHHHH
Q psy11461 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPV----IP----SY--FT------NRALCYLK-LKQ-----YVHCCDDC 71 (253)
Q Consensus 14 a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~----~~----~~--~~------~~a~~~~~-~~~-----~~~A~~~~ 71 (253)
...-...|..++..|+|.+|+..|+.++..-|- +. .+ +. -+|...-. ... .++..+.+
T Consensus 102 l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~l 181 (320)
T 3mkr_B 102 LIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRIC 181 (320)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHH
Confidence 344567899999999999999999999877542 11 11 11 11211111 011 01211222
Q ss_pred HHHH-----hhCCCcHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 72 RKAL-----ELEPSLVK-AQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 72 ~~al-----~l~p~~~~-a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
+-+- .+.|.+.. ++..--...++.++|..|....++.+++.|.
T Consensus 182 ELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 182 EMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 2221 11222222 2222234467789999999999999999775
No 332
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=37.60 E-value=96 Score=26.71 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhCCC--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 64 YVHCCDDCRKALELEPS--------LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 64 ~~~A~~~~~~al~l~p~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
|+..+.++..|+.+-|. ..-|+..+|.+|+..|+|++|+....+++..
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 56678888888876553 2457888999999999999999999999864
No 333
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=37.12 E-value=1.3e+02 Score=23.16 Aligned_cols=127 Identities=10% Similarity=0.151 Sum_probs=68.1
Q ss_pred cCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--hCCHHHHHHH
Q psy11461 28 RQYEEAINCYTRAIIK-NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE--INHYDEAVKH 104 (253)
Q Consensus 28 g~~~~A~~~y~~ai~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~--~~~~~~A~~~ 104 (253)
..|.+-+..+.+=... .-.....+..+..+.+. .+-..|+.+|..|+..+|-++.-.+..-..|.. .++-.=.+..
T Consensus 72 ~rFQ~~v~aLE~E~~~ErqqL~etH~~RV~a~Ln-~rrr~Ale~y~~ALq~~pP~~~~vl~aLk~yirae~KDR~Htl~h 150 (219)
T 3pmr_A 72 EHFQSILQTLEEQVSGERQRLVETHATRVIALIN-DQRRAALEGFLAALQADPPQAERVLLALRRYLRAEQKEQRHTLRH 150 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3455555555432221 11122344444444432 345778899999998887776554444333333 2334446888
Q ss_pred HHHHHhhchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 105 LQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLI 157 (253)
Q Consensus 105 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 157 (253)
|+-+...+|.....+...+..-++.......... ..+...|.+...+...+
T Consensus 151 f~Hv~~~dpe~A~~~k~~vl~hL~~Id~r~NqSL--~lL~~~P~l~~~i~~~i 201 (219)
T 3pmr_A 151 YQHVAAVDPEKAQQMRFQVHTHLQVIEERVNQSL--GLLDQNPHLAQELRPQI 201 (219)
T ss_dssp HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHH--HHHTTSHHHHHHHHHHH
T ss_pred HHHHHccCHHHHhhcchHHHHHHHHHHHHHhhhH--HHHHcCchHHHHHhHHH
Confidence 9999888988655554444444444443332222 34445566655554444
No 334
>1oqe_K Tumor necrosis factor receptor superfamily member 13C; ligand receptor complex, immune system; 2.50A {Homo sapiens} SCOP: g.24.1.2
Probab=36.76 E-value=7.4 Score=19.63 Aligned_cols=10 Identities=30% Similarity=0.388 Sum_probs=7.4
Q ss_pred CCCCCCCCCC
Q psy11461 216 HFDPVTRVKL 225 (253)
Q Consensus 216 ~~DP~tr~~l 225 (253)
.|||++|.=+
T Consensus 9 CfDpLvR~CV 18 (31)
T 1oqe_K 9 CFDLLVRHCV 18 (31)
T ss_dssp EEETTTTEEE
T ss_pred ccChhhhcce
Confidence 5899998533
No 335
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=36.58 E-value=12 Score=30.00 Aligned_cols=29 Identities=10% Similarity=-0.075 Sum_probs=26.0
Q ss_pred CCCC--CCCCCCCCCCcCcHHHHHHHHHHhh
Q psy11461 217 FDPV--TRVKLSADQLIPNFAMKEVVDNFLQ 245 (253)
Q Consensus 217 ~DP~--tr~~l~~~~l~pN~~lk~a~~~~l~ 245 (253)
.-|+ .|++++...|+||..|+..|+.+-.
T Consensus 220 ~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~ 250 (267)
T 3htk_C 220 DCPQAACSQVVSMRDFVRDPIMELRCKIAKM 250 (267)
T ss_dssp ECSGGGCSCEECGGGEEECHHHHHHHHHHHH
T ss_pred CCCcccccCcCchhhCCcCHHHHHHHHHHHH
Confidence 5899 7799999999999999999988754
No 336
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.31 E-value=2.6 Score=26.82 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCCCCCcCcHHHHHHH
Q psy11461 216 HFDPVTRVKLSADQLIPNFAMKEVV 240 (253)
Q Consensus 216 ~~DP~tr~~l~~~~l~pN~~lk~a~ 240 (253)
..=|+-|.+++...+.||..|++.|
T Consensus 60 ~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecv_A 60 SSCPVCRISYQPENIRPNRHVANIV 84 (85)
T ss_dssp CCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred CcCCCCCCccCHHhcCccHHHHHhh
Confidence 4579999999999999999886543
No 337
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=36.07 E-value=8.8 Score=27.02 Aligned_cols=51 Identities=8% Similarity=0.125 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhchhcCCCCCCCCCCCCCCCCcCcHHHHHHHHHHhhhcCccc
Q psy11461 199 ELNDLFVAIDERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAY 251 (253)
Q Consensus 199 ~~~~~f~~~~~~~~~~g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~~n~wa~ 251 (253)
+++++|..+.+....|--+||-...+++.. .-|.++.+|.+.+|..+|-+|
T Consensus 42 ~i~~vl~~la~~tg~NiV~d~~V~G~VTl~--l~~v~~~~al~~iL~~~gl~~ 92 (128)
T 4ar0_A 42 EIRTILQILAKESGMNIVASDSVNGKMTLS--LKDVPWDQALDLVMQARNLDM 92 (128)
T ss_dssp EHHHHHHHHHHTTCCEEEECTTCCCEEEEE--EEEEEHHHHHHHHHHHHTEEE
T ss_pred CHHHHHHHHHHHHCCcEEEcCCCCceeeEe--ecCCCHHHHHHHHHHHcCceE
Confidence 467888888888888888999888777654 679999999999999998765
No 338
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=35.66 E-value=70 Score=27.60 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461 31 EEAINCYTRAIIKNP--------VIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77 (253)
Q Consensus 31 ~~A~~~y~~ai~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (253)
+..+..+..|+..-| +-..++..+|.+|+-+++|++|+..++++|..
T Consensus 177 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 177 EQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 344455555555433 23457889999999999999999999999864
No 339
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.91 E-value=2.3 Score=27.00 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=20.7
Q ss_pred CCCCCCCCCCCCCCCcCcHHHHHHH
Q psy11461 216 HFDPVTRVKLSADQLIPNFAMKEVV 240 (253)
Q Consensus 216 ~~DP~tr~~l~~~~l~pN~~lk~a~ 240 (253)
..=|+-|.+++...+.||..|++.|
T Consensus 60 ~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 60 GNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp BCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred CCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 3579999999999999999886543
No 340
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=34.55 E-value=54 Score=22.11 Aligned_cols=18 Identities=6% Similarity=-0.156 Sum_probs=9.5
Q ss_pred HHHhhCHHHHHHHHHHHH
Q psy11461 58 YLKLKQYVHCCDDCRKAL 75 (253)
Q Consensus 58 ~~~~~~~~~A~~~~~~al 75 (253)
..+.|+|++|...+.+|-
T Consensus 30 ~Ak~g~fe~A~~~l~eA~ 47 (105)
T 2e2a_A 30 AAENGDFAKADSLVVEAG 47 (105)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 345555555555555554
No 341
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=34.17 E-value=55 Score=21.96 Aligned_cols=18 Identities=6% Similarity=-0.062 Sum_probs=8.7
Q ss_pred HHHhhCHHHHHHHHHHHH
Q psy11461 58 YLKLKQYVHCCDDCRKAL 75 (253)
Q Consensus 58 ~~~~~~~~~A~~~~~~al 75 (253)
..+.|+|++|...+.++-
T Consensus 28 ~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 28 QAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 334455555555554443
No 342
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=33.43 E-value=68 Score=23.18 Aligned_cols=33 Identities=15% Similarity=0.053 Sum_probs=20.7
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKN 44 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~ 44 (253)
..|..|...|..+-..|+|.+|...|..+|+..
T Consensus 99 ~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 99 LSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 345556666666666666666666666666653
No 343
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=33.25 E-value=2e+02 Score=23.59 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC--------HHH--HHHHHHHHHHhhCHHHHH-----HHHHHHHhh--
Q psy11461 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVI--------PSY--FTNRALCYLKLKQYVHCC-----DDCRKALEL-- 77 (253)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~y~~ai~~~p~~--------~~~--~~~~a~~~~~~~~~~~A~-----~~~~~al~l-- 77 (253)
..-...|..++..|+|.+|+..|+.++..-|-. ..+ +...+.-|.--=..+-+. .+..+.+++
T Consensus 115 ~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAA 194 (325)
T 3mv2_A 115 NEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAA 194 (325)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 345668999999999999999999998763311 011 111111111100000000 011222222
Q ss_pred -------CCCcHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 78 -------EPSLVK-AQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 78 -------~p~~~~-a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
.|.+.. ++..--...++.++|..|....++.+++.|.
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 222221 2222234467889999999999999999986
No 344
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=32.62 E-value=20 Score=23.58 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=25.8
Q ss_pred CCCCCCCCCCCCCCCcCcHHHHHHHHHHhh
Q psy11461 216 HFDPVTRVKLSADQLIPNFAMKEVVDNFLQ 245 (253)
Q Consensus 216 ~~DP~tr~~l~~~~l~pN~~lk~a~~~~l~ 245 (253)
..=|+-|.+++.+.+++|..+.+.++.+-+
T Consensus 59 ~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~ 88 (100)
T 3lrq_A 59 AQCPHCRAPLQLRELVNCRWAEEVTQQLDT 88 (100)
T ss_dssp SBCTTTCCBCCGGGCEECTTHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHhHhhHHHHHHHHHHHH
Confidence 356999999999999999999998887654
No 345
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=32.36 E-value=1e+02 Score=26.49 Aligned_cols=63 Identities=6% Similarity=-0.092 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFG--LRQYEEAINCYTRAIIK-----NPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75 (253)
Q Consensus 13 ~a~~~~~~g~~~~~--~g~~~~A~~~y~~ai~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 75 (253)
.+.++.++|..--. ......++..|.+||.. .......|+.+|-++++.+++.+|+..+..+-
T Consensus 261 YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 261 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhh
Confidence 34555555554322 22223467788888875 34456678888999999999999999988774
No 346
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=31.75 E-value=35 Score=26.38 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=25.3
Q ss_pred HHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCC
Q psy11461 56 LCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINH 97 (253)
Q Consensus 56 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~ 97 (253)
.++.+.|.|++|...+++.+.-++.+.+.-.-|..+-....-
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
Confidence 344566777777777777776665555555555555444443
No 347
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=31.72 E-value=26 Score=20.71 Aligned_cols=20 Identities=15% Similarity=0.419 Sum_probs=14.3
Q ss_pred CcHHHHHHHHHHhhhcCccc
Q psy11461 232 PNFAMKEVVDNFLQENDWAY 251 (253)
Q Consensus 232 pN~~lk~a~~~~l~~n~wa~ 251 (253)
++.-|++||..||++.-|.+
T Consensus 29 ~s~lireAi~~yl~~~E~~~ 48 (58)
T 2ay0_A 29 PHWLIKQAIFSYLEQLENSD 48 (58)
T ss_dssp HHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 55568999999999887643
No 348
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.49 E-value=92 Score=21.39 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhchh
Q psy11461 63 QYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114 (253)
Q Consensus 63 ~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 114 (253)
.+++|..+..+||.+|.. |.-...+..|..++..+.+++.+...
T Consensus 18 ~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhcccccc
Confidence 356666666666666531 22222222344455556666666543
No 349
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=31.12 E-value=65 Score=21.85 Aligned_cols=17 Identities=18% Similarity=0.030 Sum_probs=8.8
Q ss_pred HHhhCHHHHHHHHHHHH
Q psy11461 59 LKLKQYVHCCDDCRKAL 75 (253)
Q Consensus 59 ~~~~~~~~A~~~~~~al 75 (253)
.+.|+|++|...+.++-
T Consensus 33 Ak~gdfe~A~~~l~eA~ 49 (109)
T 3k1s_A 33 AKQGKMAEADEAMVKAK 49 (109)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34555555555555543
No 350
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=30.52 E-value=1.1e+02 Score=19.87 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=12.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhC
Q psy11461 20 EGNRYFGLRQYEEAINCYTRAIIKN 44 (253)
Q Consensus 20 ~g~~~~~~g~~~~A~~~y~~ai~~~ 44 (253)
.|..+|..|+|=+|=+.+...-...
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~ 31 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKA 31 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhC
Confidence 4445555555555555555444433
No 351
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=30.41 E-value=75 Score=24.80 Aligned_cols=46 Identities=24% Similarity=0.246 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhCCCcHHH---HHHHHHHHHH-hCCHHHHHHHHHHHHhh
Q psy11461 64 YVHCCDDCRKALELEPSLVKA---QFFLGQALHE-INHYDEAVKHLQRAYDL 111 (253)
Q Consensus 64 ~~~A~~~~~~al~l~p~~~~a---~~~lg~~~~~-~~~~~~A~~~~~~al~l 111 (253)
|.+|...... .+.|.++-. ..+.+.-|+. +++.++|....++|+.-
T Consensus 153 Y~~A~~iA~~--~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~ 202 (234)
T 2br9_A 153 YKAASDIAMT--ELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 202 (234)
T ss_dssp HHHHHHHHHH--HSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--cCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455444432 344555422 2233333333 56677776666666654
No 352
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=29.85 E-value=1.9e+02 Score=22.14 Aligned_cols=105 Identities=10% Similarity=0.101 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--hCCHHHHHHHHHHHHhhchhcccchHHHHHHHH
Q psy11461 50 YFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHE--INHYDEAVKHLQRAYDLSREQNLNYGDDIACQL 127 (253)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~--~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 127 (253)
.+..+..+.+. .+-..|+.+|..|+..+|-++.-.+..-.-|.. .++-.=.+..|+-+...+|.....+...+..-+
T Consensus 88 tH~qRV~a~ln-~rrr~Ale~y~~ALq~~pp~~~~il~aLk~yirae~KDR~Hti~hy~Hv~~~dpe~A~~~k~~v~~hL 166 (211)
T 3umh_A 88 THMARVEAMLN-DRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHL 166 (211)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCHHHHHhcchHHHHHH
Confidence 34444444332 345678888888888777765544433333322 233334677788888888775443333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11461 128 RIAKKKRWAETEEKRIAQEIELLTYLNRLI 157 (253)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 157 (253)
+.......... ..+...|.+...+...+
T Consensus 167 ~~id~r~NqsL--~lL~~~P~l~~~i~~~~ 194 (211)
T 3umh_A 167 RVIYERMNQSL--SLLYNVPAVAEEIQDEV 194 (211)
T ss_dssp HHHHHHHHHHH--HGGGGSHHHHHHHHHHH
T ss_pred HHHHHHHhHhH--HHHHhCcHHHHHHHHHH
Confidence 33332222211 23335555555444433
No 353
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=29.52 E-value=71 Score=22.10 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=11.1
Q ss_pred HHHhhCHHHHHHHHHHHHh
Q psy11461 58 YLKLKQYVHCCDDCRKALE 76 (253)
Q Consensus 58 ~~~~~~~~~A~~~~~~al~ 76 (253)
..+.|+|++|...+..|-+
T Consensus 47 ~Ak~gdfe~A~~~l~eA~e 65 (120)
T 3l8r_A 47 AMREKNYILAEQKLQEAND 65 (120)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3455666666666666543
No 354
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=29.19 E-value=1.9e+02 Score=21.96 Aligned_cols=70 Identities=9% Similarity=-0.056 Sum_probs=52.9
Q ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy11461 9 TNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK--NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP 79 (253)
Q Consensus 9 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 79 (253)
.++.-...|...+..+ ..+...++.+.|.-.... .-..+.+|..-|..+-..|++.+|...|..+++..-
T Consensus 75 ND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 75 NDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4455555666666655 344466777877776654 456788999999999999999999999999998754
No 355
>2ra1_A Surface layer protein; triple coiled-coil, S-layer protein, protein binding, sugar protein; 2.41A {Geobacillus stearothermophilus}
Probab=28.91 E-value=2.6e+02 Score=23.57 Aligned_cols=106 Identities=8% Similarity=-0.020 Sum_probs=62.8
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHH--HhhCHHH-HHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCH
Q psy11461 23 RYFGLRQYEEAINCYTRAIIKNPVIPSYFTN-RALCYL--KLKQYVH-CCDDCRKALELEPSLVKAQFFLGQALHEINHY 98 (253)
Q Consensus 23 ~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~-~a~~~~--~~~~~~~-A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~ 98 (253)
.....|+.+.+.+.|.+..-.-.....++.+ .|..-. -++.|.. |.....+++- |-+....+..++.+..-|++
T Consensus 112 ~ai~~~dl~~a~~~YHklsyeikk~avll~RVYG~stRe~il~~fk~pA~~l~~~~~y--~Itv~~~~~~~~~a~~~g~l 189 (412)
T 2ra1_A 112 AAVDAKDLKKAEELYHKISYELKTRTVILDRVYGQSTRELLRSTFKADAQALRDRLIY--DITVAMKAREAQDAVKAGNL 189 (412)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSTHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhhccHHHHHHHhhhhhHhhhhcEEEEecccChhHHHHHHHHhhchHHHHHHHhhh--HHHHHHHHHHHHHHhccCcH
Confidence 4456788888888887764221111111111 011110 1223333 4444444332 34555666778889999999
Q ss_pred HHHHHHHHHHHhhchhcccchHHHHHHHHHHH
Q psy11461 99 DEAVKHLQRAYDLSREQNLNYGDDIACQLRIA 130 (253)
Q Consensus 99 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 130 (253)
++|...+..+-+.-|.-.+.+..++......+
T Consensus 190 ~~a~~~l~~v~~~l~kv~d~FkaeL~~aa~~a 221 (412)
T 2ra1_A 190 DKAKAALDQVNQYVSKVTDAFKAELQKAAQDA 221 (412)
T ss_dssp HHHHHHHHHHHHHGGGCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Confidence 99999999999999988777877776544443
No 356
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=28.73 E-value=25 Score=23.90 Aligned_cols=25 Identities=16% Similarity=0.318 Sum_probs=19.8
Q ss_pred CCCcCcHHHHHHHHHHhhhcCcccC
Q psy11461 228 DQLIPNFAMKEVVDNFLQENDWAYE 252 (253)
Q Consensus 228 ~~l~pN~~lk~a~~~~l~~n~wa~~ 252 (253)
.++.=...-|++.-.|-++|||.|.
T Consensus 60 ~qv~L~F~skE~AiayAek~G~~y~ 84 (108)
T 2lju_A 60 QQVCLSFTTRELAIAYAVAHKIDYT 84 (108)
T ss_dssp CCSCEEESSHHHHHHHHHHTTCEEE
T ss_pred ccceEecCCHHHHHHHHHHcCCEEE
Confidence 4455556678999999999999884
No 357
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=28.62 E-value=29 Score=26.44 Aligned_cols=33 Identities=9% Similarity=0.054 Sum_probs=15.4
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy11461 23 RYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRA 55 (253)
Q Consensus 23 ~~~~~g~~~~A~~~y~~ai~~~p~~~~~~~~~a 55 (253)
.++++|.|++|.+.+++.+..++++..+...|.
T Consensus 126 VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~ 158 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERIFGDPNSHMPFKSKLL 158 (211)
T ss_dssp HHHHTTCHHHHHHHHHHHC-----CCTTHHHHH
T ss_pred HHHHccchHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 455666666666666666555554444444333
No 358
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.34 E-value=1.3e+02 Score=25.90 Aligned_cols=48 Identities=19% Similarity=0.017 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhCCC-----------------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 64 YVHCCDDCRKALELEPS-----------------------LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 64 ~~~A~~~~~~al~l~p~-----------------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
++..+.+++.|+.+-|. ..-|+..+|.+++..|+|++|+....+++..
T Consensus 156 y~~I~~DL~~A~~~Lp~~~~~~~~~~~~~~~~~~~~~r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 156 LSYAKAELLTAIEDLPYQYGTQTNLYYGSYGAQWQGKLFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCSSSCBTTBCGGGGTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCccccccccccccccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 55677788888775442 1247788999999999999999999999864
No 359
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=28.14 E-value=20 Score=26.19 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=24.7
Q ss_pred CCCCCCCCCCCCCCcCcHHHHHHHHHHh
Q psy11461 217 FDPVTRVKLSADQLIPNFAMKEVVDNFL 244 (253)
Q Consensus 217 ~DP~tr~~l~~~~l~pN~~lk~a~~~~l 244 (253)
.-|+-|.+++.++++||..++..+..+.
T Consensus 55 ~CP~Cr~~~~~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 55 KCPVDNEILLENQLFPDNFAKREILSLM 82 (170)
T ss_dssp BCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred CCCCCccCcchhhhhhhHHHHHHHhhcc
Confidence 6899999999999999999999887643
No 360
>4err_A Autotransporter adhesin; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.55A {Vibrio vulnificus}
Probab=27.81 E-value=39 Score=22.04 Aligned_cols=18 Identities=11% Similarity=0.518 Sum_probs=15.3
Q ss_pred cHHHHHHHHHHhhhcCcc
Q psy11461 233 NFAMKEVVDNFLQENDWA 250 (253)
Q Consensus 233 N~~lk~a~~~~l~~n~wa 250 (253)
=..|...|+.||..+||-
T Consensus 47 l~~L~~kie~Yl~~hPdS 64 (90)
T 4err_A 47 SFELNKKINDYIAEHPTS 64 (90)
T ss_dssp HHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHhcCCch
Confidence 357899999999999984
No 361
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=27.37 E-value=17 Score=24.62 Aligned_cols=18 Identities=11% Similarity=0.241 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhhcCccc
Q psy11461 234 FAMKEVVDNFLQENDWAY 251 (253)
Q Consensus 234 ~~lk~a~~~~l~~n~wa~ 251 (253)
-.|++||+..-+++|||.
T Consensus 24 ~lL~~Ai~~~~dddGWa~ 41 (105)
T 2kpm_A 24 KFVLAALEQSSDDAGWAN 41 (105)
T ss_dssp HHHHHHHHHTBCTTSCEE
T ss_pred HHHHHHHHHhcCCcCcEe
Confidence 479999999989999974
No 362
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=27.28 E-value=85 Score=20.32 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYT 38 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~ 38 (253)
.+..|+.-|..++..|++..|+.++.
T Consensus 38 mA~~Y~~Da~~fl~kGD~v~Ala~is 63 (87)
T 2pmr_A 38 RALNYRDDSVYYLEKGDHITSFGCIT 63 (87)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566777777777888877777654
No 363
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.18 E-value=78 Score=21.75 Aligned_cols=44 Identities=7% Similarity=0.108 Sum_probs=25.4
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy11461 28 RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP 79 (253)
Q Consensus 28 g~~~~A~~~y~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 79 (253)
..|+.|..+..+||..+.. +.--..+.-|.+.+..+.++|.+..
T Consensus 17 ~~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~ 60 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISS 60 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccc
Confidence 4567788888888877541 2222223335555666666666654
No 364
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=27.11 E-value=87 Score=20.23 Aligned_cols=26 Identities=8% Similarity=0.202 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHH
Q psy11461 13 SDKELKDEGNRYFGLRQYEEAINCYT 38 (253)
Q Consensus 13 ~a~~~~~~g~~~~~~g~~~~A~~~y~ 38 (253)
.+..|+.-|..++..|++..|+.++.
T Consensus 34 mA~~Y~~Da~~fl~kGD~v~Ala~is 59 (86)
T 2oo2_A 34 NIEAYISDSRYFLEKGDLVRAFECVV 59 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45677777888888888888877754
No 365
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=27.01 E-value=1.4e+02 Score=26.05 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461 48 PSYFTNRALCYLKLKQYVHCCDDCRKALE 76 (253)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (253)
..++..+|.+|+-.++|++|+..+++++.
T Consensus 182 ~aA~allarv~L~~~~~~~A~~~a~~vi~ 210 (517)
T 3qnk_A 182 GAAYALKSRVELYDKRYEDVIKSCAEVYK 210 (517)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788889999999999999999999885
No 366
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=26.80 E-value=1.5e+02 Score=25.44 Aligned_cols=30 Identities=10% Similarity=-0.063 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461 48 PSYFTNRALCYLKLKQYVHCCDDCRKALEL 77 (253)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (253)
..++..+|.+|+-.++|++|+..++++|..
T Consensus 197 ~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 197 LSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 457888999999999999999999999854
No 367
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=26.47 E-value=1.3e+02 Score=25.78 Aligned_cols=31 Identities=16% Similarity=-0.016 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy11461 47 IPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77 (253)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 77 (253)
-..++..+|.+|+-+++|++|...+++++..
T Consensus 190 k~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 190 TDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3468889999999999999999999999864
No 368
>3qtm_A Uncharacterized protein C4B3.07; tetratricopeptide repeat, enhancer of translation terminatio translation; HET: CME; 2.15A {Schizosaccharomyces pombe} PDB: 3qtn_B
Probab=26.28 E-value=2.5e+02 Score=22.52 Aligned_cols=48 Identities=10% Similarity=0.067 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhcCCCCCCCCCCCCCCCCcCcHHHHHHHHHHh
Q psy11461 190 EARRDRSMAELNDLFVAIDERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFL 244 (253)
Q Consensus 190 ~~~~~~~~~~~~~~f~~~~~~~~~~g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l 244 (253)
...+.+.+.++...|+.+. . -.|-+-.|++++.++|=+.|-.+...|-
T Consensus 152 ~~ta~kmi~qa~~~l~~La--q-----k~~e~~t~~tld~~rpl~~lS~yl~~~~ 199 (346)
T 3qtm_A 152 TQLVNPYIEKAIQYLRPLA--Q-----DSTEYFDALTPDSLRPLYILSSYLFQFG 199 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHH--S-----TTSCCCTTCCTTTTTTHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHH--h-----hChhhccccccchhhHHHHHHHHHHHhc
Confidence 3456677888888887665 1 2344444555566677777766655543
No 369
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=26.16 E-value=1.4e+02 Score=25.73 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhCC-------------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy11461 64 YVHCCDDCRKALELEP-------------SLVKAQFFLGQALHEINHYDEAVKHLQRAYD 110 (253)
Q Consensus 64 ~~~A~~~~~~al~l~p-------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 110 (253)
|+..+.+++.|+.+-| +..-|+-.+|.+++..++|++|.....+++.
T Consensus 160 y~~I~~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 160 YQQIFDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4566777777776433 1235788899999999999999999999985
No 370
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=25.14 E-value=29 Score=22.19 Aligned_cols=16 Identities=13% Similarity=0.381 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhhcCcc
Q psy11461 235 AMKEVVDNFLQENDWA 250 (253)
Q Consensus 235 ~lk~a~~~~l~~n~wa 250 (253)
.||++|..||.++|..
T Consensus 46 vLr~~V~~~L~~~~~V 61 (83)
T 2zqe_A 46 ALRQAIREALRRDKRV 61 (83)
T ss_dssp HHHHHHHHHHHHCTTE
T ss_pred HHHHHHHHHHhcCCce
Confidence 7999999999999864
No 371
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=25.12 E-value=1e+02 Score=24.42 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=10.1
Q ss_pred hCCHHHHHHHHHHHHhh
Q psy11461 95 INHYDEAVKHLQRAYDL 111 (253)
Q Consensus 95 ~~~~~~A~~~~~~al~l 111 (253)
+++.++|+...++|+.-
T Consensus 191 ln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 191 LNSPDRACNLAKQAFDE 207 (260)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 46666666666665543
No 372
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=24.82 E-value=1.7e+02 Score=25.41 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhCCC-----------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 64 YVHCCDDCRKALELEPS-----------LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 64 ~~~A~~~~~~al~l~p~-----------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
++..+++++.|+..-|. ..-|+..+|.+++..++|++|.....+++..
T Consensus 153 ~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 153 YDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677888888876553 2357888999999999999999999999864
No 373
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.55 E-value=2e+02 Score=20.85 Aligned_cols=60 Identities=5% Similarity=-0.045 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHhhCCCc------HHHHHH-HHHH--HHHhCCHHHHHHHHHHHHhh
Q psy11461 52 TNRALCYLKLKQYVHCCDDCRKALELEPSL------VKAQFF-LGQA--LHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 52 ~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------~~a~~~-lg~~--~~~~~~~~~A~~~~~~al~l 111 (253)
+..|..++..|+|-+|-+.++.+-...+.. ..++.. ++.+ +...|+...|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445777888899999999999998765544 334444 4333 46679999999999999874
No 374
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=24.03 E-value=40 Score=18.87 Aligned_cols=14 Identities=21% Similarity=0.641 Sum_probs=10.7
Q ss_pred HHHHHHhhhcCccc
Q psy11461 238 EVVDNFLQENDWAY 251 (253)
Q Consensus 238 ~a~~~~l~~n~wa~ 251 (253)
+-+..||+.|.|-.
T Consensus 22 ~~A~~~Lea~nWDL 35 (45)
T 3e21_A 22 DEAITLLEQNNWDL 35 (45)
T ss_dssp HHHHHHHHHTTTCH
T ss_pred HHHHHHHHHcCCcH
Confidence 45778999999953
No 375
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=23.76 E-value=1.8e+02 Score=19.83 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=8.0
Q ss_pred hCCHHHHHHHHHHHHh
Q psy11461 95 INHYDEAVKHLQRAYD 110 (253)
Q Consensus 95 ~~~~~~A~~~~~~al~ 110 (253)
.|+|++|+.+|..+++
T Consensus 31 ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 31 AGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 3455555555554444
No 376
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=23.50 E-value=1.2e+02 Score=23.90 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=10.7
Q ss_pred hCCHHHHHHHHHHHHhh
Q psy11461 95 INHYDEAVKHLQRAYDL 111 (253)
Q Consensus 95 ~~~~~~A~~~~~~al~l 111 (253)
+++.+.|....++|+.-
T Consensus 187 ln~~~~Ac~lAk~Afd~ 203 (248)
T 3uzd_A 187 QNAPEQACHLAKTAFDD 203 (248)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 46677776666666554
No 377
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=23.40 E-value=1.1e+02 Score=21.38 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q psy11461 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIK 43 (253)
Q Consensus 12 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~ai~~ 43 (253)
..+..+...|..++..||..+|-+-|-+|...
T Consensus 5 ~lAe~yL~EA~ell~kGD~vQAsEK~ykAaee 36 (129)
T 2jpu_A 5 TSAEVYYEEAEEFLSKGDLVQACEKYYKAAEE 36 (129)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 45778999999999999999998888777654
No 378
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=22.05 E-value=1.1e+02 Score=21.85 Aligned_cols=25 Identities=16% Similarity=-0.001 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461 52 TNRALCYLKLKQYVHCCDDCRKALE 76 (253)
Q Consensus 52 ~~~a~~~~~~~~~~~A~~~~~~al~ 76 (253)
...|..|..-|+.+.|.-.|-+.+.
T Consensus 44 lr~A~~y~~egd~e~AYily~R~~~ 68 (146)
T 2xze_A 44 IRMASIYSEEGNIEHAFILYNKYIT 68 (146)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3446666666666666666666443
No 379
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=21.95 E-value=2.2e+02 Score=24.94 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhCCC-------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy11461 64 YVHCCDDCRKALELEPS-------------LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111 (253)
Q Consensus 64 ~~~A~~~~~~al~l~p~-------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 111 (253)
++..++++..|+..-|. ..-|+..+|.+++..++|++|...+..++..
T Consensus 167 ~~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 167 LKWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 45677788888876552 1357888999999999999999999999864
No 380
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=21.79 E-value=35 Score=19.27 Aligned_cols=18 Identities=17% Similarity=0.497 Sum_probs=13.4
Q ss_pred CcHHHHHHHHHHhhhcCc
Q psy11461 232 PNFAMKEVVDNFLQENDW 249 (253)
Q Consensus 232 pN~~lk~a~~~~l~~n~w 249 (253)
++--|++|+..||+..-|
T Consensus 29 ~s~lir~Ai~~yl~~~e~ 46 (52)
T 2gpe_A 29 PHWLIKQAIFSYLEQLEN 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455689999999987544
No 381
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=21.79 E-value=1.2e+02 Score=26.15 Aligned_cols=29 Identities=3% Similarity=0.044 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy11461 48 PSYFTNRALCYLKLKQYVHCCDDCRKALE 76 (253)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 76 (253)
..++..+|.+|+.+++|++|+..+++++.
T Consensus 180 ~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 180 GAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 45788899999999999999999998874
No 382
>3msv_A Nuclear import adaptor, NRO1; helix repeats, heat repeats, protein binding; 2.18A {Schizosaccharomyces pombe}
Probab=21.33 E-value=3.4e+02 Score=22.16 Aligned_cols=48 Identities=10% Similarity=0.065 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhcCCCCCCCCCCCCCCCCcCcHHHHHHHHHHh
Q psy11461 190 EARRDRSMAELNDLFVAIDERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFL 244 (253)
Q Consensus 190 ~~~~~~~~~~~~~~f~~~~~~~~~~g~~DP~tr~~l~~~~l~pN~~lk~a~~~~l 244 (253)
...+.+.+.++...|+.+. .-.|-+-.|++++.++|=+.|--+...|-
T Consensus 199 ~~ta~kmi~qa~~~l~~La-------qk~~e~~t~~tld~~rpl~~lS~yl~~~~ 246 (393)
T 3msv_A 199 TQLVNPYIEKAIQYLRPLA-------QDSTEYFDALTPDSLRPLYILSSYLFQFG 246 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------STTSCCCTTCCTGGGTTHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHH-------hhChhhccccccchhhHHHHHHHHHHHhc
Confidence 3456677888888887665 12344444555666677777766655543
No 383
>2hfg_R Tumor necrosis factor receptor superfamily member; FAB fragment, TNFRSF, antibody-receptor complex, CRD, immune; 2.61A {Homo sapiens}
Probab=21.29 E-value=20 Score=20.22 Aligned_cols=10 Identities=40% Similarity=0.717 Sum_probs=7.5
Q ss_pred CCCCCCCCCC
Q psy11461 216 HFDPVTRVKL 225 (253)
Q Consensus 216 ~~DP~tr~~l 225 (253)
.|||++|.=+
T Consensus 21 CfDPLvR~CV 30 (51)
T 2hfg_R 21 CFDPLVRHCV 30 (51)
T ss_dssp EEETTTTEEE
T ss_pred ccChhhhcce
Confidence 5999998533
No 384
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=21.09 E-value=72 Score=16.75 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhh
Q psy11461 98 YDEAVKHLQRAYDL 111 (253)
Q Consensus 98 ~~~A~~~~~~al~l 111 (253)
|++|+..|+.+++.
T Consensus 18 yDKAVaSfk~alk~ 31 (37)
T 3s6n_M 18 YDKAVASFKHALKN 31 (37)
T ss_pred HHHHHHHHHHHHhc
Confidence 45555555555543
No 385
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=21.09 E-value=49 Score=23.90 Aligned_cols=30 Identities=23% Similarity=0.322 Sum_probs=24.8
Q ss_pred CCCCCCCCCC-CCCCCcCcHHHHHHHHHHhh
Q psy11461 216 HFDPVTRVKL-SADQLIPNFAMKEVVDNFLQ 245 (253)
Q Consensus 216 ~~DP~tr~~l-~~~~l~pN~~lk~a~~~~l~ 245 (253)
..-|+-|.++ ....+.||..|++.|+.+..
T Consensus 91 ~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 91 KECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 4589999999 45679999999999998854
No 386
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=21.09 E-value=1.3e+02 Score=26.03 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhhCCC--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy11461 64 YVHCCDDCRKALELEPS--------LVKAQFFLGQALHEINHYDEAVKHLQRAYD 110 (253)
Q Consensus 64 ~~~A~~~~~~al~l~p~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 110 (253)
|+..+++++.|+.+-|. ..-|+..+|.+|+..++|++|+..+.+++.
T Consensus 154 y~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 154 WAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 56678888888876553 235788899999999999999999998874
No 387
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=20.64 E-value=53 Score=17.86 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=7.0
Q ss_pred HHHHHHHHHhhh
Q psy11461 235 AMKEVVDNFLQE 246 (253)
Q Consensus 235 ~lk~a~~~~l~~ 246 (253)
++++|+++.|++
T Consensus 23 avrqALQdLlse 34 (40)
T 4e17_B 23 AVRQALQDLLSE 34 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 556666666554
Done!