RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11461
(253 letters)
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 216 bits (552), Expect = 2e-70
Identities = 128/278 (46%), Positives = 170/278 (61%), Gaps = 40/278 (14%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
+ELK++GNR F R+Y EA CY RAI +NP++ Y+TNRALCYLK++Q DCR+A
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64
Query: 75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKR 134
LEL+ VKA FFLGQ E+ YDEA+ +LQRAY L++EQ LN+GDDI LRIAKKKR
Sbjct: 65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 124
Query: 135 WAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDAVQEAVMRIEARRD 194
W EE+RI QE EL +YL RLI + E+EL +R+ E DG ++ IEA+ D
Sbjct: 125 WNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGH-IRAQQACIEAKHD 183
Query: 195 RSMAELNDLFVAIDERR---------------------------------------RKVG 215
+ MA++++LF +DE+R ++VG
Sbjct: 184 KYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG 243
Query: 216 HFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
HF+PVTR L+ +QLIPN AMKEV+D F+ EN W +Y
Sbjct: 244 HFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVEDY 281
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 149 bits (378), Expect = 6e-46
Identities = 75/128 (58%), Positives = 94/128 (73%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
+ELK++GNR F R+Y EA CY RAI +NP++ Y+TNRALCYLK++Q DCR+A
Sbjct: 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 69
Query: 75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKR 134
LEL+ VKA FFLGQ E+ YDEA+ +LQRAY L++EQ LN+GDDI LRIAKKKR
Sbjct: 70 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129
Query: 135 WAETEEKR 142
W EE+R
Sbjct: 130 WNSIEERR 137
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 113 bits (284), Expect = 5e-32
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
E + EG YF + A+ YT I + P ++NRA KL + DC KA+
Sbjct: 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI 65
Query: 76 ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE-QNLNYGDDIACQLRIAKKKR 134
E +P+ V+A A + Y A++ L A E N + +I A ++R
Sbjct: 66 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125
Query: 135 W 135
+
Sbjct: 126 F 126
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 112 bits (283), Expect = 2e-31
Identities = 29/96 (30%), Positives = 47/96 (48%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
+LK EGN ++Y +AI+ YT+A+ P P Y +NRA Y Q+ +D A
Sbjct: 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELAT 72
Query: 76 ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
++P KA LG A ++ Y A + ++ +
Sbjct: 73 VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 108 bits (273), Expect = 6e-30
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
ELK + N YF + YE AI Y++AI NP Y+ NR+L YL+ + Y + D +A+
Sbjct: 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 74
Query: 76 ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRW 135
EL+ +K + + + + A++ + + D + + K
Sbjct: 75 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-----DAKMKYQECNKIVK 129
Query: 136 AETEEKRIAQE 146
+ E+ IA +
Sbjct: 130 QKAFERAIAGD 140
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 106 bits (268), Expect = 1e-29
Identities = 26/96 (27%), Positives = 47/96 (48%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
ELK++GN+ + ++A+ CY+ AI +P ++NR+ Y K Y +D K +
Sbjct: 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65
Query: 76 ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
+L+P K AL +N ++EA + +
Sbjct: 66 DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 106 bits (268), Expect = 2e-29
Identities = 36/96 (37%), Positives = 53/96 (55%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
LK EGN + +E A++ Y +AI NP YF NRA Y KL Y DC +A+
Sbjct: 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAI 73
Query: 76 ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
++P+ KA +G AL +N + EAV + ++A +L
Sbjct: 74 CIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109
Score = 52.2 bits (126), Expect = 6e-09
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 22 NR---YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE 78
NR Y L Y A+ RAI +P + L L ++V +KALEL+
Sbjct: 51 NRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD 110
Query: 79 PSLVKAQFFLGQALHEIN 96
P + L A ++
Sbjct: 111 PDNETYKSNLKIAELKLR 128
Score = 34.1 bits (79), Expect = 0.013
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ 63
G L ++ EA+ Y +A+ +P +Y +N + LKL++
Sbjct: 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 106 bits (267), Expect = 2e-29
Identities = 25/96 (26%), Positives = 44/96 (45%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
E K++GN YF Y A+ Y A+ ++P ++NRA C KL ++ DDC +
Sbjct: 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCI 74
Query: 76 ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
L+ +K L + + +A + + A +
Sbjct: 75 RLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110
Score = 46.4 bits (111), Expect = 5e-07
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 21 GNR---YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77
NR L +++ A++ I + + +A C + ++++ AL++
Sbjct: 51 SNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110
Query: 78 EPS 80
+PS
Sbjct: 111 DPS 113
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 106 bits (268), Expect = 2e-29
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
+K++GN F Y +A+ YT AI +NP ++NRA CY KL ++ DC + +
Sbjct: 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI 77
Query: 76 ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
+LEP+ +K AL + Y +A+ Q+A DL
Sbjct: 78 QLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113
Score = 48.8 bits (117), Expect = 1e-07
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 21 GNR---YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77
NR Y L +++ A+ I P +T +A +K Y D +KAL+L
Sbjct: 54 SNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113
Query: 78 EPSLVKAQ 85
+ S +A
Sbjct: 114 DSSCKEAA 121
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 106 bits (267), Expect = 3e-29
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNP---VIPSYFTNRALCYLKLKQYVHCCDDC 71
++L+ EGN F Y A+ YT+A+ + NRA C+LKL+ Y +
Sbjct: 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEA 88
Query: 72 RKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
KA+E + VKA + QAL ++ D+AV LQR L
Sbjct: 89 SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128
Score = 40.8 bits (96), Expect = 7e-05
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 22 NR---YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE 78
NR + L Y++A ++AI K+ R+ KL + D ++ + LE
Sbjct: 70 NRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129
Query: 79 PS 80
P
Sbjct: 130 PK 131
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 105 bits (263), Expect = 4e-29
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
+ K++GN F Y EA++CY + I P P ++N+A+ +KL +Y C++ L
Sbjct: 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65
Query: 76 ELEPSLVKA------QFFLGQALHEINHYDEAVKHLQRA 108
+ Q+ L A + V +
Sbjct: 66 RYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 100 bits (250), Expect = 6e-27
Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 16/135 (11%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
+ K+ GN + + ++ A+ Y +A +P +Y TN+A Y + Y C + C KA+
Sbjct: 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65
Query: 76 ELEP-------SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLR 128
E+ + KA +G + + Y +A+ ++ R D+ + +
Sbjct: 66 EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP------DVLKKCQ 119
Query: 129 IAKKKRWAETEEKRI 143
A+K E++R+
Sbjct: 120 QAEKIL---KEQERL 131
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A
{Danio rerio} PDB: 2c2v_S 2oxq_C
Length = 179
Score = 97.4 bits (242), Expect = 3e-25
Identities = 68/178 (38%), Positives = 98/178 (55%), Gaps = 44/178 (24%)
Query: 115 QNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAET 174
Q LN+GDDI LRIAKKKRW EEKRI+QE EL YL++LI + E+EL + ++
Sbjct: 7 QRLNFGDDIPSALRIAKKKRWNSIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDD 66
Query: 175 KRLDGDAVQEAVMRIEARRDRSMAELNDLFVAIDERR----------------------- 211
+ GD + +++++ D+ + ++++LF +DE+R
Sbjct: 67 SQNGGD-----ISKMKSKHDKYLMDMDELFSQVDEKRKKREIPDYLCGKISFELMREPCI 121
Query: 212 ----------------RKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYEY 253
++VGHFDPVTR L+ DQLIPN AMKEV+D F+QEN W +Y
Sbjct: 122 TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWVEDY 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 94.4 bits (235), Expect = 3e-24
Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 22/146 (15%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAII------------------KNPVIPSYFTNRAL 56
+ L+ +GN F + Y+EAI+ Y A+ + + N +
Sbjct: 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQ 71
Query: 57 CYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116
CYL + + + L+ E + KA F +A DEA + L+
Sbjct: 72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA- 130
Query: 117 LNYGDDIACQLRIAKKKRWAETEEKR 142
+A +++I ++R + + R
Sbjct: 131 ---ASVVAREMKIVTERRAEKKADSR 153
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 96.5 bits (240), Expect = 1e-23
Identities = 38/194 (19%), Positives = 73/194 (37%), Gaps = 22/194 (11%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAI---------------IKNPVIPSYFTNRALCYL 59
+K+ G YF +Y++A+ Y + + + + N A+C+L
Sbjct: 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207
Query: 60 KLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY 119
KL+ + + C KALEL+ + K G+A +N ++ A Q+ L
Sbjct: 208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN---- 263
Query: 120 GDDIACQLRIAKKK--RWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRL 177
QL + +++ R E+K A E L +A + + ++
Sbjct: 264 -KAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQK 322
Query: 178 DGDAVQEAVMRIEA 191
A ++ + EA
Sbjct: 323 SNTAGSQSQVETEA 336
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 90.4 bits (225), Expect = 3e-23
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
KD GN + + +E+A Y +AI +P +++ N+A Y + K++ C C KA+
Sbjct: 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69
Query: 76 ELEPSL-------VKAQFFLGQALHEINHYDEAVKHLQRAYDLSR 113
E+ KA G A + N AV+ R+ R
Sbjct: 70 EVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 91.4 bits (227), Expect = 7e-23
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 21/144 (14%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAII----------------KNPVIPSYFTNRALCY 58
++K+EGN +F + EAI Y A+ K + S N A CY
Sbjct: 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCY 98
Query: 59 LKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN 118
K K Y D K L+++ + VKA + LG A +EA ++L +A L+
Sbjct: 99 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN--- 155
Query: 119 YGDDIACQLRIAKKKRWAETEEKR 142
DI + K ++ +
Sbjct: 156 --LDIRNSYELCVNKLKEARKKDK 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 92.1 bits (228), Expect = 1e-21
Identities = 36/189 (19%), Positives = 82/189 (43%), Gaps = 28/189 (14%)
Query: 14 DKELKDEGNRYFGLRQYEEAINCYTRAI----------------IKNPVIPSYFTNRALC 57
+K++G YF +Y +A+ Y + + ++ ++ ++ N A+C
Sbjct: 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF-LNLAMC 326
Query: 58 YLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117
YLKL++Y + C KAL L+ + K + G+A +N ++ A ++ +++ QN
Sbjct: 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQN- 384
Query: 118 NYGDDIACQLRIAKKKRWAETE-EKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKR 176
Q+ + +KK E ++RI + + +DA++E ++
Sbjct: 385 ---KAARLQISMCQKKAKEHNERDRRIYANM-----FKKFAEQDAKEEANKAMGKKTSEG 436
Query: 177 LDGDAVQEA 185
+ + ++
Sbjct: 437 VTNEKGTDS 445
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 89.7 bits (223), Expect = 1e-20
Identities = 28/93 (30%), Positives = 48/93 (51%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
ELK + N YF + YE AI Y++AI NP Y+ NR+L YL+ + Y + D +A+
Sbjct: 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 67
Query: 76 ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
EL+ +K + + + + A++ +
Sbjct: 68 ELDKKYIKGYYRRAASNMALGKFRAALRDYETV 100
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 87.8 bits (217), Expect = 2e-20
Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 22/145 (15%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAI-----------------IKNPVIPSYFTNRALC 57
K +GN F + EEA+ Y AI + V N A C
Sbjct: 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAAC 239
Query: 58 YLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117
+KLK+Y C L E KA F G+A E+ D A ++A + +
Sbjct: 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD-- 297
Query: 118 NYGDDIACQLRIAKKKRWAETEEKR 142
I +LR ++ A ++++
Sbjct: 298 ---KAIRRELRALAEQEKALYQKQK 319
Score = 35.4 bits (81), Expect = 0.014
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 27 LRQYEEAINCYTRAIIKNPVIP-SYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ 85
L++Y+EAI + + P + F R +L Q DD RKA + P +
Sbjct: 243 LKRYDEAIGHCNIVLTEEEKNPKALF-RRGKAKAELGQMDSARDDFRKAQKYAPDDKAIR 301
Query: 86 FFLGQALHEINHYDEAVKHL 105
L + + K +
Sbjct: 302 RELRALAEQEKALYQKQKEM 321
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 85.5 bits (212), Expect = 2e-19
Identities = 17/97 (17%), Positives = 38/97 (39%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
++ + G + Q +A++ + A+ +P + RA +L + + D K
Sbjct: 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86
Query: 75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
++L+ A+ G L + DEA ++
Sbjct: 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123
Score = 80.5 bits (199), Expect = 1e-17
Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 9/137 (6%)
Query: 2 SKSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSY----FTNRALC 57
+ +L + +Y +A + Y + P I Y C
Sbjct: 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHC 304
Query: 58 YLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117
+ K ++ V C + L++EP V A +A YDEA++ + A + +
Sbjct: 305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND-- 362
Query: 118 NYGDDIACQLRIAKKKR 134
I L A++
Sbjct: 363 ---QQIREGLEKAQRLL 376
Score = 71.3 bits (175), Expect = 2e-14
Identities = 14/94 (14%), Positives = 37/94 (39%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
+ L+ + FG Y AI + + RA C++K + D + A
Sbjct: 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 203
Query: 75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
+L+ +A + + +++ ++ ++ ++
Sbjct: 204 SKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237
Score = 58.2 bits (141), Expect = 4e-10
Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 15/142 (10%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+ + + EAI + + P + +RA YL + Y D A E +
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKK-------- 132
+ + L +A + + + L ++N + I ++A +
Sbjct: 362 DQQIREGLEKAQRLLKQSQKRDYY----KILGVKRNAKKQEIIKAYRKLALQWHPDNFQN 417
Query: 133 ---KRWAETEEKRIAQEIELLT 151
K+ AE + IA E+L+
Sbjct: 418 EEEKKKAEKKFIDIAAAKEVLS 439
Score = 57.4 bits (139), Expect = 9e-10
Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 15/107 (14%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+ + + + A+ T+ I + R LK + DD +K L+ PS
Sbjct: 67 ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
Query: 81 ---------------LVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112
++ Y A+ L + ++
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173
Score = 56.6 bits (137), Expect = 2e-09
Identities = 12/103 (11%), Positives = 27/103 (26%), Gaps = 12/103 (11%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+ + +AI+ A F + Y +L + + R+ L+L+
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243
Query: 81 LVKAQFFL------------GQALHEINHYDEAVKHLQRAYDL 111
+ + L Y +A +
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286
Score = 54.3 bits (131), Expect = 9e-09
Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 15/103 (14%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSY---------------FTNRALCYLKLKQYV 65
G+ + +EA + + + + NP ++AL Y
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160
Query: 66 HCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
K LE+ + + + + +A+ L+ A
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 203
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 83.4 bits (207), Expect = 2e-19
Identities = 28/97 (28%), Positives = 43/97 (44%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
+E + EG YF + A+ YT I + P ++NRA KL + DC KA
Sbjct: 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 199
Query: 75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
+E +P+ V+A A + Y A++ L A
Sbjct: 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236
Score = 81.1 bits (201), Expect = 2e-18
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
+ K EGN+++ RQ++EAI Y +A + I +Y NRA + +Y A+
Sbjct: 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLNDAV 65
Query: 76 ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
E + + ++ I + + L++
Sbjct: 66 EQGREMRADYKVISKSFARIGNAYHKLGDLKKT 98
Score = 61.8 bits (151), Expect = 1e-11
Identities = 11/88 (12%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+ +YE AI+ A+ + + + + + + ++ H D +K +E
Sbjct: 45 AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK 104
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
+ L ++ + ++ +K +
Sbjct: 105 SLTE-HRTADILTKLRNAEKELKKAEAE 131
Score = 60.3 bits (147), Expect = 4e-11
Identities = 9/88 (10%), Positives = 20/88 (22%), Gaps = 1/88 (1%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+ + + + I + A KL+ + P
Sbjct: 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPE 137
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
+ G+ + + AVK
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEM 165
Score = 60.3 bits (147), Expect = 5e-11
Identities = 12/88 (13%), Positives = 26/88 (29%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+ LR E+ + NP Y + + + ++ P
Sbjct: 112 ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE 171
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
+ AL ++ + EA+ +A
Sbjct: 172 DARGYSNRAAALAKLMSFPEAIADCNKA 199
Score = 58.7 bits (143), Expect = 2e-10
Identities = 12/72 (16%), Positives = 23/72 (31%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
L + EAI +AI K+P + +A + +K+Y + A +
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 239
Query: 81 LVKAQFFLGQAL 92
+
Sbjct: 240 VNNGSSAREIDQ 251
Score = 41.8 bits (99), Expect = 1e-04
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQY 64
+++Y A+ A K+ + + + R + L K
Sbjct: 214 ATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257
Score = 27.1 bits (61), Expect = 4.5
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 79 PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
S+ + G ++ +DEA++H +A++L
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWEL 34
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 84.6 bits (210), Expect = 3e-19
Identities = 17/94 (18%), Positives = 37/94 (39%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
++ + G + Q +A++ + A+ +P + RA +L + + D K
Sbjct: 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63
Query: 75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
+ L+ A+ G L + DEA ++
Sbjct: 64 IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 97
Score = 82.3 bits (204), Expect = 2e-18
Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 9/136 (6%)
Query: 2 SKSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSY----FTNRALC 57
+ +L + +Y +A + Y + P + Y C
Sbjct: 222 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHC 281
Query: 58 YLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117
+ K ++ V C + L++EP V A +A YDEA++ + A + +
Sbjct: 282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND-- 339
Query: 118 NYGDDIACQLRIAKKK 133
I L A++
Sbjct: 340 ---QQIREGLEKAQRL 352
Score = 73.5 bits (181), Expect = 2e-15
Identities = 13/94 (13%), Positives = 36/94 (38%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
+ L+ + F Y AI + + RA C++K + D + A
Sbjct: 121 QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 180
Query: 75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
+L+ +A + + +++ ++ ++ ++
Sbjct: 181 SKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214
Score = 60.4 bits (147), Expect = 8e-11
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 15/103 (14%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+ + + + A+ T+ I + R LK + DD +K L+ PS
Sbjct: 44 ATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 103
Query: 81 LVKAQFFLGQ---------------ALHEINHYDEAVKHLQRA 108
+ + Q + Y A+ L +
Sbjct: 104 EQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI 146
Score = 57.3 bits (139), Expect = 8e-10
Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 12/100 (12%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+ + +AI+ A F + Y +L + + R+ L+L+
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220
Query: 81 LVKAQFFL------------GQALHEINHYDEAVKHLQRA 108
+ + L Y +A +
Sbjct: 221 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 260
Score = 57.3 bits (139), Expect = 8e-10
Identities = 14/80 (17%), Positives = 28/80 (35%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+ + + EAI + + P + +RA YL + Y D A E +
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338
Query: 81 LVKAQFFLGQALHEINHYDE 100
+ + L +A + +
Sbjct: 339 DQQIREGLEKAQRLLKQSQK 358
Score = 55.7 bits (135), Expect = 3e-09
Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 15/103 (14%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNP---------------VIPSYFTNRALCYLKLKQYV 65
G+ + +EA + + + + NP ++AL Y
Sbjct: 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137
Query: 66 HCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
K LE+ + + + + +A+ L+ A
Sbjct: 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 180
Score = 38.4 bits (90), Expect = 0.001
Identities = 8/64 (12%), Positives = 15/64 (23%)
Query: 48 PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQR 107
L Q A++ +P A + + A+ L +
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 108 AYDL 111
L
Sbjct: 63 VIAL 66
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 82.6 bits (204), Expect = 3e-18
Identities = 30/200 (15%), Positives = 60/200 (30%), Gaps = 9/200 (4%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+ G+ R + +P P +++ ++A + P
Sbjct: 30 ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEE 140
+LG AL + + A RA+ L E+ + + R+ +
Sbjct: 90 HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA 149
Query: 141 K---RIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDAVQEAVMRIEARRDRSM 197
+ +AQ + + L + + E + R A+ +V + R RS
Sbjct: 150 QVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTR------AQAIAASVRPLAPTRVRSK 203
Query: 198 AELNDLFVAIDERRRKVGHF 217
L FV+ G
Sbjct: 204 GPLRVGFVSNGFGAHPTGLL 223
Score = 59.1 bits (143), Expect = 2e-10
Identities = 15/80 (18%), Positives = 25/80 (31%)
Query: 29 QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88
+ A+ P + A L + ++ L L P +A L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 89 GQALHEINHYDEAVKHLQRA 108
G+ + EA LQ+A
Sbjct: 64 GRVRWTQQRHAEAAVLLQQA 83
Score = 40.2 bits (94), Expect = 4e-04
Identities = 9/41 (21%), Positives = 12/41 (29%)
Query: 71 CRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
R A+ P A L A + +QR L
Sbjct: 12 LRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL 52
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 77.9 bits (192), Expect = 3e-18
Identities = 13/95 (13%), Positives = 29/95 (30%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G + ++++A + + + YF C L Y ++ +
Sbjct: 25 GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
+ F + ++ D A A L+ Q
Sbjct: 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119
Score = 49.7 bits (119), Expect = 5e-08
Identities = 14/71 (19%), Positives = 26/71 (36%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G L YE+A+ Y+ + + P + + A C+L+L A L +
Sbjct: 59 GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118
Query: 81 LVKAQFFLGQA 91
+ +A
Sbjct: 119 QPAHEALAARA 129
Score = 40.9 bits (96), Expect = 7e-05
Identities = 5/75 (6%), Positives = 18/75 (24%)
Query: 37 YTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEIN 96
+ + ++ + L+ + LG +
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 97 HYDEAVKHLQRAYDL 111
Y++A++ +
Sbjct: 67 LYEQALQSYSYGALM 81
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 81.3 bits (201), Expect = 7e-18
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
LKD+GN++F ++Y++AI Y A+ P +++N + CY+ + + KAL
Sbjct: 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKAL 66
Query: 76 ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
EL+P K A + + +A+ L
Sbjct: 67 ELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99
Score = 75.9 bits (187), Expect = 5e-16
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76
L+ G F A +AI P + SY AL + KAL+
Sbjct: 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYI-YMALIMADRNDSTEYYNYFDKALK 298
Query: 77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
L+ + + GQ + +YD+A K +A +L
Sbjct: 299 LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL 333
Score = 72.1 bits (177), Expect = 1e-14
Identities = 18/88 (20%), Positives = 35/88 (39%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G F L+ Y++A + +A +P + A + ++ C +A P
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
+ F + L + N +D+A+K A
Sbjct: 371 APEVPNFFAEILTDKNDFDKALKQYDLA 398
Score = 70.5 bits (173), Expect = 4e-14
Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 12/137 (8%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCD---------DC 71
+++A+ Y AI + + A K
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438
Query: 72 RKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAK 131
KA +L+P +A+ L Q + DEA+ + + DL+R A A
Sbjct: 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL---QAITFAEAA 495
Query: 132 KKRWAETEEKRIAQEIE 148
K + + +A++I+
Sbjct: 496 KVQQRIRSDPVLAKKIQ 512
Score = 60.9 bits (148), Expect = 6e-11
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 9/97 (9%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+ ++++ ++ A K P P A + A+ELE
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404
Query: 81 LVKAQFFLGQALHE---------INHYDEAVKHLQRA 108
L + + + + ++ EA L++A
Sbjct: 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441
Score = 55.9 bits (135), Expect = 3e-09
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Query: 27 LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86
R +EE ++ + + + + +D +KA+EL P V +
Sbjct: 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYI 274
Query: 87 FLGQALHEINHYDEAVKHLQRAYDLSRE 114
++ + + N E + +A L
Sbjct: 275 YMALIMADRNDSTEYYNYFDKALKLDSN 302
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 80.2 bits (198), Expect = 2e-17
Identities = 31/136 (22%), Positives = 55/136 (40%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
+LK+ GN +F + + EAI Y AI +P P +++N + CY+ + KA
Sbjct: 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKA 85
Query: 75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKR 134
LE++P KA A + ++ +A+ L + + L K
Sbjct: 86 LEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKV 145
Query: 135 WAETEEKRIAQEIELL 150
E K + ++L
Sbjct: 146 LNENLSKDEGRGSQVL 161
Score = 72.1 bits (177), Expect = 1e-14
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 1/91 (1%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G +F +A +I +P SY AL + +KA++L P
Sbjct: 250 GIFHFLKNNLLDAQVLLQESINLHPTPNSYI-FLALTLADKENSQEFFKFFQKAVDLNPE 308
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
+ GQ + Y A + Q+A L
Sbjct: 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339
Score = 70.9 bits (174), Expect = 2e-14
Identities = 20/91 (21%), Positives = 34/91 (37%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G YF L+ Y+ A + +A NP + A K ++ + P+
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
L + F + L + +D A+K A L
Sbjct: 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407
Score = 70.9 bits (174), Expect = 3e-14
Identities = 18/88 (20%), Positives = 32/88 (36%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+E + +A+ NP P + +R Y L+ Y + +D +KA L P
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
V L L++ + E+
Sbjct: 343 NVYPYIQLACLLYKQGKFTESEAFFNET 370
Score = 65.5 bits (160), Expect = 2e-12
Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 21/146 (14%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCC------------ 68
++ AI Y A V K
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444
Query: 69 ----DDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE-----QNLNY 119
KA EL+P +A+ L Q ++ DEA++ + + L+R Q +
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF 504
Query: 120 GDDIACQLRIAKKKRWAETEEKRIAQ 145
+ Q R+ + E +A+
Sbjct: 505 AEAAKIQKRLRADPIISAKMELTLAR 530
Score = 59.7 bits (145), Expect = 1e-10
Identities = 15/104 (14%), Positives = 28/104 (26%), Gaps = 16/104 (15%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+ ++ E+ + +K P +P T A + A LE
Sbjct: 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410
Query: 81 LVKA----------------QFFLGQALHEINHYDEAVKHLQRA 108
K Q + ++ A+K L +A
Sbjct: 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454
Score = 54.3 bits (131), Expect = 8e-09
Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 1/99 (1%)
Query: 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCD 69
+ + L Y ++ T + + +
Sbjct: 205 SATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264
Query: 70 DCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
++++ L P+ + FL L + + E K Q+A
Sbjct: 265 LLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKA 302
Score = 52.4 bits (126), Expect = 4e-08
Identities = 10/87 (11%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 29 QYEEAINCYTRAIIKNP-VIPSYFT---NRALCYLKLKQYVHCCDDCRKALELEPSLVKA 84
+ + +P +Y NR + K + + A+EL+P+
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 85 QFFLGQALHEINHYDEAVKHLQRAYDL 111
+ ++ ++ +A ++
Sbjct: 62 YSNISACYISTGDLEKVIEFTTKALEI 88
Score = 49.3 bits (118), Expect = 4e-07
Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 2/108 (1%)
Query: 3 KSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAI--IKNPVIPSYFTNRALCYLK 60
S+ + + E + Y+ A + A+ + + Y L
Sbjct: 162 PSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221
Query: 61 LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
Y L + A + G N+ +A LQ +
Sbjct: 222 TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 75.2 bits (185), Expect = 3e-17
Identities = 17/102 (16%), Positives = 33/102 (32%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
++ ++ + EEA + I + Y A Y +Q+ D A
Sbjct: 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97
Query: 76 ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117
L + F GQ + +A + + S ++ L
Sbjct: 98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139
Score = 30.1 bits (68), Expect = 0.39
Identities = 2/40 (5%), Positives = 10/40 (25%)
Query: 72 RKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
+ + ++ + + +EA +
Sbjct: 26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY 65
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 75.3 bits (185), Expect = 3e-17
Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 2/125 (1%)
Query: 17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76
L + YE+A + + + +F C + QY
Sbjct: 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83
Query: 77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE--QNLNYGDDIACQLRIAKKKR 134
++ + F + L + EA L A +L + ++ L K K+
Sbjct: 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKK 143
Query: 135 WAETE 139
+ E
Sbjct: 144 EMKHE 148
Score = 43.0 bits (101), Expect = 1e-05
Identities = 16/145 (11%), Positives = 33/145 (22%), Gaps = 2/145 (1%)
Query: 29 QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88
+ + A + Y + L+ + L
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 89 GQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIE 148
G + YD A+ + + C L+ + AQE+
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFL--AQELI 119
Query: 149 LLTYLNRLITEDAEKELGSIRRDAE 173
++ L +I+ E
Sbjct: 120 ANXPEFXELSTRVSSMLEAIKLKKE 144
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 75.5 bits (186), Expect = 5e-16
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 21/146 (14%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAI---------IKNPVIPSY-------FTNRALCY 58
++LK+ GN +F + +E AI YT+ + ++ N C
Sbjct: 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACK 283
Query: 59 LKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN 118
LK+ + D C +ALE++PS KA + Q + YD+A+ L++A +++ E
Sbjct: 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK-- 341
Query: 119 YGDDIACQLRIAKKKRWAETEEKRIA 144
I +L K+K A+ ++++ A
Sbjct: 342 ---AIQAELLKVKQKIKAQKDKEKAA 364
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 74.5 bits (183), Expect = 2e-15
Identities = 16/91 (17%), Positives = 33/91 (36%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G Y + + EA ++++ +P + A + ++ A L
Sbjct: 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
FLG ++ + A ++LQ +Y L
Sbjct: 440 THLPYLFLGMQHMQLGNILLANEYLQSSYAL 470
Score = 66.4 bits (162), Expect = 1e-12
Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 4/121 (3%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+ + ++++AI+ YT A + + +++L + + + + L
Sbjct: 414 AHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIA----KKKRWA 136
LG + A+ H Q A L ++ N A + K K +
Sbjct: 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533
Query: 137 E 137
Sbjct: 534 A 534
Score = 65.6 bits (160), Expect = 2e-12
Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 7/98 (7%)
Query: 21 GNRYFGLRQYEEAINCYTRAI-------IKNPVIPSYFTNRALCYLKLKQYVHCCDDCRK 73
G F + AIN + A+ + + N Y KLK Y D +
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541
Query: 74 ALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
L L + + A+ HL + +
Sbjct: 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579
Score = 62.9 bits (153), Expect = 1e-11
Identities = 8/88 (9%), Positives = 27/88 (30%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+ F ++ + + T+ + +P + + + ++ P
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
+G +N EA ++ ++
Sbjct: 372 KAVTWLAVGIYYLCVNKISEARRYFSKS 399
Score = 60.6 bits (147), Expect = 8e-11
Identities = 15/98 (15%), Positives = 25/98 (25%), Gaps = 7/98 (7%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE-- 78
G ++ L A + P + + + AL L
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507
Query: 79 -----PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
LG A ++ YD A+ L + L
Sbjct: 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545
Score = 57.5 bits (139), Expect = 9e-10
Identities = 19/74 (25%), Positives = 34/74 (45%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G+ Y L+ Y+ AI+ + ++ + + T AL YL K ++L + P+
Sbjct: 523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582
Query: 81 LVKAQFFLGQALHE 94
+ A L +AL E
Sbjct: 583 EIMASDLLKRALEE 596
Score = 56.8 bits (137), Expect = 2e-09
Identities = 13/100 (13%), Positives = 25/100 (25%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
+ L Y +I +A +++ K
Sbjct: 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI 331
Query: 75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
LE++P + +LHE ++ D E
Sbjct: 332 LEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371
Score = 44.4 bits (105), Expect = 2e-05
Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 37/128 (28%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTN--------------------------- 53
G Y L ++ A CY A++ + F
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266
Query: 54 -----RALCYLKLKQYVH-----CCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVK 103
R+L LKL + H +D ++ L + + + +
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326
Query: 104 HLQRAYDL 111
+ ++
Sbjct: 327 ITTKILEI 334
Score = 44.1 bits (104), Expect = 3e-05
Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 2/106 (1%)
Query: 13 SDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
+ L+ + +QY+ A + + F A Y Y
Sbjct: 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLT 141
Query: 73 KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLN 118
K S ++ L ++ + A+ L +++
Sbjct: 142 KEDLYNRSS-ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNA 186
Score = 42.9 bits (101), Expect = 6e-05
Identities = 15/107 (14%), Positives = 30/107 (28%), Gaps = 17/107 (15%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
Y Y A T+ + N + A C +KL + + +
Sbjct: 124 AQVYCCTGDYARAKCLLTKEDLYNRSSACRY-LAAFCLVKLYDWQGALNLLGETNPFRKD 182
Query: 81 LVKAQ----------------FFLGQALHEINHYDEAVKHLQRAYDL 111
A + GQ ++++D A + + A +
Sbjct: 183 EKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229
Score = 34.4 bits (79), Expect = 0.035
Identities = 17/137 (12%), Positives = 36/137 (26%), Gaps = 2/137 (1%)
Query: 14 DKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRK 73
L G + + A + S R Y L + + ++
Sbjct: 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLE-ASMCYLRGQVYTNLSNFDRAKECYKE 225
Query: 74 ALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKK 133
AL ++ +A L H + +E L+ Y +++ + +
Sbjct: 226 ALMVDAKCYEAFDQLVS-NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSH 284
Query: 134 RWAETEEKRIAQEIELL 150
+ I L
Sbjct: 285 EDELRRAEDYLSSINGL 301
Score = 28.7 bits (64), Expect = 2.1
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 3/110 (2%)
Query: 58 YLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117
L +QY K L++ + A F+L Q Y A L + ++
Sbjct: 94 ALMQQQYKCAAFVGEKVLDITGNPNDA-FWLAQVYCCTGDYARAKCLLTKE--DLYNRSS 150
Query: 118 NYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGS 167
A L + A + N+L+ +D +L +
Sbjct: 151 ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEA 200
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 73.3 bits (179), Expect = 5e-15
Identities = 20/138 (14%), Positives = 47/138 (34%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+ + +EA+ Y AI +P ++N +++ +A+++ P+
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEE 140
A L + + EA+ + A L + Y + C + + E +
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169
Query: 141 KRIAQEIELLTYLNRLIT 158
K ++ + L
Sbjct: 170 KLVSIVADQLEKNRLPSV 187
Score = 66.4 bits (161), Expect = 1e-12
Identities = 18/91 (19%), Positives = 35/91 (38%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
N EEA+ Y +A+ P + +N A + + ++A+ + P+
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
A +G L E+ A++ RA +
Sbjct: 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQI 106
Score = 45.6 bits (107), Expect = 9e-06
Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 1/89 (1%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+ + EAI Y A+ P P + N A C + + + +K + +
Sbjct: 118 ASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAY 109
++ + ++A
Sbjct: 178 QLEKNRL-PSVHPHHSMLYPLSHGFRKAI 205
Score = 45.6 bits (107), Expect = 9e-06
Identities = 16/68 (23%), Positives = 22/68 (32%)
Query: 44 NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVK 103
P N A + RKALE+ P A L L + EA+
Sbjct: 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64
Query: 104 HLQRAYDL 111
H + A +
Sbjct: 65 HYKEAIRI 72
Score = 32.5 bits (73), Expect = 0.14
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
P+ + L E + +EAV+ ++A ++
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 38
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 71.8 bits (177), Expect = 1e-14
Identities = 22/88 (25%), Positives = 31/88 (35%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
GN Y Q +EAI Y A+ P + N A + AL+ P
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
L + LG L + +EA +A
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKA 161
Score = 69.9 bits (172), Expect = 4e-14
Identities = 25/88 (28%), Positives = 34/88 (38%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
GN R ++ A+ Y RA+ +P N A Y + D R+A+EL+P
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
A L AL E EA A
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTA 297
Score = 69.5 bits (171), Expect = 7e-14
Identities = 22/88 (25%), Positives = 29/88 (32%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
N EA +CY A+ P N A + RKALE+ P
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
A L L + EA+ H + A
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEA 365
Score = 68.3 bits (168), Expect = 1e-13
Identities = 15/88 (17%), Positives = 31/88 (35%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+R + +E A + + P + + + ++ A++ P
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
L +A LG E EA++H + A
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHA 93
Score = 68.0 bits (167), Expect = 2e-13
Identities = 26/88 (29%), Positives = 37/88 (42%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
GN L + EEA CY +AI P ++N + + KA+ L+P+
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
+ A LG L E +D AV RA
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRA 229
Score = 57.6 bits (140), Expect = 7e-10
Identities = 15/75 (20%), Positives = 29/75 (38%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
N EEA+ Y +A+ P + +N A + + ++A+ + P+
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371
Query: 81 LVKAQFFLGQALHEI 95
A +G L E+
Sbjct: 372 FADAYSNMGNTLKEM 386
Score = 44.5 bits (106), Expect = 2e-05
Identities = 7/56 (12%), Positives = 12/56 (21%)
Query: 53 NRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
A + + C + EP L + D + A
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA 59
Score = 36.8 bits (86), Expect = 0.004
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLK 62
+ + +EA+ Y AI +P ++N +++
Sbjct: 346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 70.8 bits (174), Expect = 1e-14
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 3/103 (2%)
Query: 12 LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQY---VHCC 68
++D + F Y EAI + + K P + RA+CY +L +Y
Sbjct: 1 MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60
Query: 69 DDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
+ + + + G+ L + A++ Q A D
Sbjct: 61 ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103
Score = 69.2 bits (170), Expect = 4e-14
Identities = 14/88 (15%), Positives = 26/88 (29%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G Q AI Y A+ ++ + + + K + +
Sbjct: 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
K + LGQA + Y +A +
Sbjct: 141 DPKVFYELGQAYYYNKEYVKADSSFVKV 168
Score = 65.8 bits (161), Expect = 6e-13
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 3/107 (2%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G+ ++ + AI + I P F Y K+YV K LEL+P+
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174
Query: 81 LVKAQFFLGQALHEINH---YDEAVKHLQRAYDLSREQNLNYGDDIA 124
+ + +A + A + ++ ++ Y D++
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221
Score = 64.6 bits (158), Expect = 2e-12
Identities = 11/94 (11%), Positives = 33/94 (35%), Gaps = 3/94 (3%)
Query: 21 GNRYFGLRQYEEAI---NCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77
Y+ L +Y+ A Y + + F +K Q + A++
Sbjct: 44 AVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103
Query: 78 EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
+ + + +G + ++ A++++++
Sbjct: 104 DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137
Score = 50.7 bits (122), Expect = 9e-08
Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 8/80 (10%)
Query: 27 LRQYEEAINCYTRAI--------IKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE 78
+ A Y + I + A Y + V + L L+
Sbjct: 192 DTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251
Query: 79 PSLVKAQFFLGQALHEINHY 98
P+ KA L L +H+
Sbjct: 252 PTNKKAIDGLKMKLEHHHHH 271
Score = 33.0 bits (76), Expect = 0.064
Identities = 4/44 (9%), Positives = 10/44 (22%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQY 64
Y R +A + + +P + +
Sbjct: 228 AYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 69.9 bits (172), Expect = 1e-14
Identities = 21/88 (23%), Positives = 35/88 (39%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
GN Y Y+EA + + +A+ F +KL+Q ++A+EL +
Sbjct: 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
+A+F G L DEA+
Sbjct: 158 DTEARFQFGMCLANEGMLDEALSQFAAV 185
Score = 67.9 bits (167), Expect = 7e-14
Identities = 22/88 (25%), Positives = 33/88 (37%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
R YE+A +T+AI +N + N A + + KALEL+ S
Sbjct: 30 MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS 89
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
A + G Y EA ++A
Sbjct: 90 AATAYYGAGNVYVVKEMYKEAKDMFEKA 117
Score = 66.4 bits (163), Expect = 2e-13
Identities = 15/88 (17%), Positives = 27/88 (30%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G L Q + A+ RA+ N +C E +P
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
A + G + ++A++ L +A
Sbjct: 192 HADAFYNAGVTYAYKENREKALEMLDKA 219
Score = 56.0 bits (136), Expect = 1e-09
Identities = 13/78 (16%), Positives = 29/78 (37%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G +EA++ + ++P F N + Y + + KA++++P
Sbjct: 166 GMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225
Query: 81 LVKAQFFLGQALHEINHY 98
+ A H +H+
Sbjct: 226 HMLALHAKKLLGHHHHHH 243
Score = 49.1 bits (118), Expect = 3e-07
Identities = 9/80 (11%), Positives = 20/80 (25%), Gaps = 3/80 (3%)
Query: 29 QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88
+ + R + + + Y + KA+E
Sbjct: 7 HHHHSSGLVPRGSHMASM---TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINF 63
Query: 89 GQALHEINHYDEAVKHLQRA 108
L +N + A+ +A
Sbjct: 64 ANLLSSVNELERALAFYDKA 83
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 67.7 bits (166), Expect = 2e-13
Identities = 11/92 (11%), Positives = 26/92 (28%), Gaps = 1/92 (1%)
Query: 21 GNRYFGL-RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP 79
G Y + + E A ++A + + ++ A +L
Sbjct: 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK 156
Query: 80 SLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
++G N+ A + +A +
Sbjct: 157 GCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188
Score = 66.2 bits (162), Expect = 7e-13
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 9/103 (8%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFT---------NRALCYLKLKQYVHCCDDC 71
G F +++ A + A+ K I + T N KLK+Y D
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259
Query: 72 RKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
R+AL L P +G + +++ AV + A L R+
Sbjct: 260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302
Score = 65.4 bits (160), Expect = 1e-12
Identities = 14/102 (13%), Positives = 28/102 (27%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G+ + ++++A+ Y A L Y +AL + P
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE 191
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDD 122
+G + + A K A + + D
Sbjct: 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233
Score = 63.1 bits (154), Expect = 8e-12
Identities = 16/81 (19%), Positives = 33/81 (40%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G+ L++Y EA++ + +A++ P S ++ + + + + D AL L
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302
Query: 81 LVKAQFFLGQALHEINHYDEA 101
+ LG + EA
Sbjct: 303 DTFSVTMLGHCIEMYIGDSEA 323
Score = 56.1 bits (136), Expect = 2e-09
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
R++ ++ + + K+P S ++L + K ++L PS
Sbjct: 29 AERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88
Query: 81 LVKAQFFLGQALHEI-NHYDEAVKHLQRA 108
+ F +G + + + A ++L +A
Sbjct: 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKA 117
Score = 44.6 bits (106), Expect = 1e-05
Identities = 10/84 (11%), Positives = 22/84 (26%)
Query: 31 EEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90
+ + ++ + A + + C +E +P
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64
Query: 91 ALHEINHYDEAVKHLQRAYDLSRE 114
L E+N +E + DL
Sbjct: 65 TLVELNKANELFYLSHKLVDLYPS 88
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 66.6 bits (163), Expect = 4e-13
Identities = 20/91 (21%), Positives = 32/91 (35%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G Y L A N +++A+ P +P F + + + + LEL+P+
Sbjct: 50 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
A G AL+ A L Y
Sbjct: 110 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140
Score = 55.4 bits (134), Expect = 2e-09
Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 4/92 (4%)
Query: 21 GNRYFGLRQYEEAINCYTRAI----IKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76
Q E + + + + + R + Y L +D +AL
Sbjct: 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71
Query: 77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
+ P + + +LG L + ++D A +
Sbjct: 72 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV 103
Score = 50.4 bits (121), Expect = 1e-07
Identities = 7/79 (8%), Positives = 15/79 (18%)
Query: 29 QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88
E T + YL L + A+ +
Sbjct: 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYA 255
Query: 89 GQALHEINHYDEAVKHLQR 107
L + + + +
Sbjct: 256 LLELSLLGQDQDDLAESDQ 274
Score = 48.8 bits (117), Expect = 4e-07
Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 4/91 (4%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQY---VHCCDDCRKALEL 77
G + + + A + +P P L KL + K+ +
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 177
Query: 78 EPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
+ +F+LG + E +
Sbjct: 178 QWGWNIVEFYLG-NISEQTLMERLKADATDN 207
Score = 48.5 bits (116), Expect = 5e-07
Identities = 12/92 (13%), Positives = 26/92 (28%), Gaps = 5/92 (5%)
Query: 22 NRYFGLRQ--YEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ---YVHCCDDCRKALE 76
Y ++ ++A + K+ + + + D
Sbjct: 150 WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS 209
Query: 77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
L L + F+LG+ + D A + A
Sbjct: 210 LAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241
Score = 35.7 bits (83), Expect = 0.008
Identities = 9/44 (20%), Positives = 12/44 (27%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQY 64
G Y L + A + A+ N L L Q
Sbjct: 222 GKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 265
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 64.8 bits (159), Expect = 5e-13
Identities = 16/88 (18%), Positives = 31/88 (35%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G + +Y +A+ + + + + Y+K + ++L P
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
VK LG ++ YD AV L +
Sbjct: 75 NVKVATVLGLTYVQVQKYDLAVPLLIKV 102
Score = 63.2 bits (155), Expect = 1e-12
Identities = 20/88 (22%), Positives = 33/88 (37%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G Y + R++ P T L Y+++++Y K E P
Sbjct: 49 GIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI 108
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
+F LG AL + +DEA+ + A
Sbjct: 109 NFNVRFRLGVALDNLGRFDEAIDSFKIA 136
Score = 62.5 bits (153), Expect = 3e-12
Identities = 17/88 (19%), Positives = 39/88 (44%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G Y +++Y+ A+ + NP+ + + L ++ D + AL L P+
Sbjct: 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
K + + ++ ++EA+ H ++A
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEALPHFKKA 170
Score = 45.1 bits (108), Expect = 4e-06
Identities = 10/65 (15%), Positives = 25/65 (38%)
Query: 44 NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVK 103
+ + Y+ ++ + + K +Y + + + V LG A + D +
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63
Query: 104 HLQRA 108
L+R+
Sbjct: 64 LLERS 68
Score = 31.3 bits (72), Expect = 0.21
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNP 45
Y + ++EEA+ + +A +
Sbjct: 151 AFSYEQMGRHEEALPHFKKANELDE 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 62.5 bits (153), Expect = 6e-13
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 8/96 (8%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQY---VHCCDDCRKALEL 77
G + Y E+I+ + +AI +P Y+ + L++Y V C + + +
Sbjct: 13 GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYN---YVINV 69
Query: 78 EP--SLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
AL I + + + L
Sbjct: 70 IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105
Score = 31.3 bits (72), Expect = 0.081
Identities = 1/25 (4%), Positives = 3/25 (12%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNP 45
+ + E
Sbjct: 83 ADALRYIEGKEVEAEIAEARAKLEH 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 64.4 bits (157), Expect = 9e-13
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 19 DEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE 78
+EG + ++ A++ ++ + I F N Y LK +++ +
Sbjct: 11 NEGVLAADKKDWKGALDAFSAVQDPHSRI--CF-NIGCMYTILKNMTEAEKAFTRSINRD 67
Query: 79 PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116
L A F G ++ YD A+K L+ A R
Sbjct: 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105
Score = 57.8 bits (140), Expect = 2e-10
Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 16/118 (13%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G Y L+ EA +TR+I ++ + + R + Y + ++Y D ++AL
Sbjct: 44 GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103
Query: 81 ----------------LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDD 122
+ + + + + +A + L A + E + D
Sbjct: 104 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 161
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 62.0 bits (151), Expect = 9e-13
Identities = 11/86 (12%), Positives = 27/86 (31%)
Query: 31 EEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQ 90
+ + + Y + +Q+ R AL+ +P+ A +LG+
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 91 ALHEINHYDEAVKHLQRAYDLSREQN 116
L A + + ++ +
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSRG 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 62.4 bits (153), Expect = 1e-12
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
GN Y+ Y+EAI Y +A+ +P + N Y K Y + +KALEL+P
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
+A + LG A ++ YDEA+++ Q+A
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKA 95
Score = 62.4 bits (153), Expect = 1e-12
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
GN Y+ Y+EAI Y +A+ +P + N Y K Y + +KALEL+P
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
+A + LG A ++ YDEA+++ Q+A
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKA 129
Score = 40.4 bits (96), Expect = 8e-05
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 53 NRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
N Y K Y + +KALEL+P +A + LG A ++ YDEA+++ Q+A
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Score = 31.6 bits (73), Expect = 0.082
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNP 45
GN Y+ Y+EAI Y +A+ +P
Sbjct: 110 GNAYYKQGDYDEAIEYYQKALELDP 134
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 61.7 bits (150), Expect = 1e-12
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 2/104 (1%)
Query: 7 FTTNN--LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQY 64
F NN + + +EG L EA + K P + + L + ++
Sbjct: 8 FEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD 67
Query: 65 VHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
A L+P + L + ++ + A+ L+
Sbjct: 68 GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 111
Score = 42.4 bits (100), Expect = 1e-05
Identities = 9/59 (15%), Positives = 16/59 (27%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP 79
G + AI A + +P + A+ + R L +P
Sbjct: 58 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116
Score = 41.3 bits (97), Expect = 4e-05
Identities = 14/59 (23%), Positives = 17/59 (28%)
Query: 53 NRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
L LKL + EP +A LG E A+ L A L
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML 80
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 65.0 bits (159), Expect = 2e-12
Identities = 19/88 (21%), Positives = 32/88 (36%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G Y Y+ A RA+ P + + D +AL++ P
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
V+ + + + ++ YD A K L RA
Sbjct: 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRA 266
Score = 63.1 bits (154), Expect = 9e-12
Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 2/108 (1%)
Query: 3 KSHNFTTNN--LSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK 60
+ F NN + + +EG L EA + P + + L +
Sbjct: 8 TDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAE 67
Query: 61 LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
++ A L+P + L + ++ + A+ L+
Sbjct: 68 NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 115
Score = 62.7 bits (153), Expect = 9e-12
Identities = 22/98 (22%), Positives = 36/98 (36%)
Query: 11 NLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDD 70
++ D ++ E + +Y E A+ NP + + Y Y +
Sbjct: 135 DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAAN 194
Query: 71 CRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
R+A+EL P + LG L N EA+ RA
Sbjct: 195 LRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232
Score = 58.1 bits (141), Expect = 4e-10
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 15/103 (14%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNP---------------VIPSYFTNRALCYLKLKQYV 65
+ A+ ++ P + + + +Y
Sbjct: 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155
Query: 66 HCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
C ALE+ P+ + LG + N+YD A +L+RA
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRA 198
Score = 53.8 bits (130), Expect = 9e-09
Identities = 14/103 (13%), Positives = 22/103 (21%), Gaps = 15/103 (14%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G + AI A + +P + A+ + R L +P
Sbjct: 62 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121
Query: 81 LVKA---------------QFFLGQALHEINHYDEAVKHLQRA 108
+ N Y E L A
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164
Score = 46.1 bits (110), Expect = 3e-06
Identities = 16/85 (18%), Positives = 22/85 (25%), Gaps = 4/85 (4%)
Query: 29 QYEEAINCYTRAIIKNPVI--PSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86
+ Y NP + + L LKL + P +A
Sbjct: 2 HMLQNNTDYPFEA-NNPYMYHENPM-EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWR 59
Query: 87 FLGQALHEINHYDEAVKHLQRAYDL 111
LG E A+ L A L
Sbjct: 60 SLGLTQAENEKDGLAIIALNHARML 84
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 62.8 bits (153), Expect = 3e-12
Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 1/92 (1%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
Y R Y++A Y + K P A + Q K L+LE
Sbjct: 61 ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120
Query: 81 LVKAQFFLGQALHEI-NHYDEAVKHLQRAYDL 111
+ A FLG + + ++ +
Sbjct: 121 NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS 152
Score = 62.1 bits (151), Expect = 5e-12
Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 16/112 (14%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNP----------------VIPSYFTNRALCYL 59
E+ + + Q +A++ + + I N + T AL Y
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65
Query: 60 KLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
K + Y ++ L+ P+ V + +A++ ++ L
Sbjct: 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117
Score = 61.7 bits (150), Expect = 7e-12
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 1/92 (1%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRA-LCYLKLKQYVHCCDDCRKALELEP 79
Q ++A+ Y + + + YL +Q + K L
Sbjct: 95 AEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154
Query: 80 SLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
+ A++ G + Y++A LQ+
Sbjct: 155 KMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186
Score = 43.2 bits (102), Expect = 2e-05
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 18/93 (19%)
Query: 24 YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK 83
Y Q ++ + + + + L L +Y + +K + PS
Sbjct: 133 YLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS--- 189
Query: 84 AQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116
EA K L + + +E N
Sbjct: 190 ---------------TEAQKTLDKILRIEKEVN 207
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 64.8 bits (158), Expect = 3e-12
Identities = 14/95 (14%), Positives = 25/95 (26%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
L + + +A P + L+ +A L P
Sbjct: 283 SGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 342
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
V A + + L +A+ L+ EQ
Sbjct: 343 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 377
Score = 64.8 bits (158), Expect = 3e-12
Identities = 16/95 (16%), Positives = 27/95 (28%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G L + + +A P + L+ +A L P
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 376
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
V A G + + L +A+ L+ EQ
Sbjct: 377 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ 411
Score = 63.6 bits (155), Expect = 7e-12
Identities = 14/95 (14%), Positives = 25/95 (26%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
L + + +A P + L+ +A L P
Sbjct: 79 DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 138
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
V A + + L +A+ L+ EQ
Sbjct: 139 QVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ 173
Score = 63.2 bits (154), Expect = 1e-11
Identities = 12/88 (13%), Positives = 20/88 (22%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G L + + +A P + L+ +A L P
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 444
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
V A G + + A
Sbjct: 445 QVVAIASNGGGRPALESIVAQLSRPDPA 472
Score = 62.8 bits (153), Expect = 1e-11
Identities = 14/92 (15%), Positives = 26/92 (28%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G L + + +A P + + L+ +A L P
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQ 308
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112
V A G + + L +A+ L+
Sbjct: 309 QVVAIASNGGGKQALETVQRLLPVLCQAHGLT 340
Score = 62.5 bits (152), Expect = 2e-11
Identities = 14/95 (14%), Positives = 26/95 (27%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
L + + +A P + L+ +A L P
Sbjct: 113 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPE 172
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
V A G + + L +A+ L+ +Q
Sbjct: 173 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 207
Score = 61.3 bits (149), Expect = 5e-11
Identities = 13/99 (13%), Positives = 26/99 (26%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
L + + +A P + L+ +A L P
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPE 410
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY 119
V A + + L +A+ L+ +Q +
Sbjct: 411 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAI 449
Score = 61.3 bits (149), Expect = 5e-11
Identities = 13/91 (14%), Positives = 23/91 (25%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
L + + +A P + L+ +A L P
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 206
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
V A G + + L +A+ L
Sbjct: 207 QVVAIASNGGGKQALETVQRLLPVLCQAHGL 237
Score = 60.5 bits (147), Expect = 8e-11
Identities = 14/95 (14%), Positives = 26/95 (27%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G L + + +A P + L+ +A L P
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 274
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
V A + + L +A+ L+ +Q
Sbjct: 275 QVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309
Score = 49.7 bits (119), Expect = 3e-07
Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 5/95 (5%)
Query: 26 GLRQYEEAINCYTRAIIK-----NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G EA++ + A+ P + L+ +A L P
Sbjct: 45 GGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 104
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
V A + + L +A+ L+ EQ
Sbjct: 105 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 139
Score = 41.7 bits (98), Expect = 1e-04
Identities = 7/59 (11%), Positives = 12/59 (20%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP 79
L + + +A P + L+ V AL
Sbjct: 419 DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALT 477
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 64.3 bits (157), Expect = 4e-12
Identities = 17/88 (19%), Positives = 37/88 (42%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G + ++ AI+ + A+ P S + + + +ALE++P
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
+++++ LG + + Y EAV + A
Sbjct: 280 FIRSRYNLGISCINLGAYREAVSNFLTA 307
Score = 57.0 bits (138), Expect = 1e-09
Identities = 9/88 (10%), Positives = 19/88 (21%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G + AI R + P A+ Y C+ + ++ P
Sbjct: 106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
+ ++
Sbjct: 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVL 193
Score = 53.1 bits (128), Expect = 2e-08
Identities = 14/100 (14%), Positives = 27/100 (27%), Gaps = 12/100 (12%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
Y ++A I +NP N+ ++ D ++
Sbjct: 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199
Query: 81 LVKA------------QFFLGQALHEINHYDEAVKHLQRA 108
++A Q LG H ++ A+ A
Sbjct: 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239
Score = 53.1 bits (128), Expect = 2e-08
Identities = 17/102 (16%), Positives = 27/102 (26%)
Query: 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCD 69
++ + E + Y L LK
Sbjct: 27 EEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTIL 86
Query: 70 DCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
A+ +P +A FLG E + A+ LQR +L
Sbjct: 87 FMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL 128
Score = 52.8 bits (127), Expect = 3e-08
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 2/96 (2%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNP--VIPSYFTNRALCYLKLKQYVHCCDDCR 72
+ E Y A +N + P T + + ++ D
Sbjct: 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN 237
Query: 73 KALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
AL + P LG L + +EAV+ RA
Sbjct: 238 AALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRA 273
Score = 37.0 bits (86), Expect = 0.004
Identities = 7/91 (7%), Positives = 18/91 (19%), Gaps = 8/91 (8%)
Query: 26 GLRQYEEAINCYTRAI-IKNPVIPSY-------FTNRALCYLKLKQYVHCCDDCRKALEL 77
G ++E A + + + + + E
Sbjct: 1 GAMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTEN 60
Query: 78 EPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
F G + + ++ A
Sbjct: 61 PFKDWPGAFEEGLKRLKEGDLPVTILFMEAA 91
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 63.5 bits (155), Expect = 7e-12
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G + +Y++A++C+T A+ P + Q R+ALEL+P
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
+++++ LG + + + EAV+H A
Sbjct: 284 YIRSRYNLGISCINLGAHREAVEHFLEA 311
Score = 56.6 bits (137), Expect = 1e-09
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 2/91 (2%)
Query: 20 EGNRYFGLRQYEEAINCYTRAIIKNP--VIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77
+ E + A+ +P + P + + +Y D AL +
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246
Query: 78 EPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
P+ LG L N +EAV +RA
Sbjct: 247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277
Score = 49.3 bits (118), Expect = 4e-07
Identities = 13/103 (12%), Positives = 23/103 (22%), Gaps = 15/103 (14%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G Q AI+ R + P + A+ + C+ R L P+
Sbjct: 105 GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA 164
Query: 81 LVKAQFFLGQALHEINH---------------YDEAVKHLQRA 108
+ + E + A
Sbjct: 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA 207
Score = 46.2 bits (110), Expect = 4e-06
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Query: 31 EEAINCYTRAIIKNPVIPSYFT----NRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86
+ Y + P L L+ + A++ +P ++A
Sbjct: 43 DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQ 102
Query: 87 FLGQALHEINHYDEAVKHLQRA 108
+LG E A+ L+R
Sbjct: 103 YLGTTQAENEQELLAISALRRC 124
Score = 36.9 bits (86), Expect = 0.004
Identities = 10/95 (10%), Positives = 16/95 (16%), Gaps = 23/95 (24%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G L + EA+ + A+ +
Sbjct: 292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWST---------------- 335
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
L AL + D R
Sbjct: 336 -------LRLALSMLGQSDAYGAADARDLSTLLTM 363
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 60.1 bits (147), Expect = 7e-12
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
GN Y+ Y+EAI Y +A+ +P + N Y K Y + +KALEL+P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
+A + LG A ++ YDEA+++ Q+A
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKA 103
Score = 50.9 bits (123), Expect = 1e-08
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
GN Y+ Y+EAI Y +A+ +P + N Y K Y + +KALEL+P+
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
Query: 81 LVKAQFFLGQALHE 94
+A+ LG A +
Sbjct: 110 NAEAKQNLGNAKQK 123
Score = 40.1 bits (95), Expect = 8e-05
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 53 NRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
N Y K Y + +KALEL+P+ +A + LG A ++ YDEA+++ Q+A
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Score = 32.8 bits (76), Expect = 0.030
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKL 61
NL GN Y+ Y+EAI Y +A+ +P N K
Sbjct: 81 YNL--------GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 60.7 bits (148), Expect = 2e-11
Identities = 14/96 (14%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 27 LRQYEEAINCYTRAIIKNPVIPSY---FTNRALCYLKLKQYVHCCDDCRKALELEPSLVK 83
L + E++ + +A+ +P P+ N+ +C K Q+ +++L +P
Sbjct: 90 LNRPAESMAYFDKAL-ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP 148
Query: 84 AQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY 119
A L + +A + ++ +
Sbjct: 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADD 184
Score = 55.0 bits (133), Expect = 3e-09
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
Y + Y +A A+ +P + RA Y LK + R+AL ++P
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74
Query: 81 LVKAQFFLGQAL-HEINHYDEAVKHLQRA 108
+ G L +N E++ + +A
Sbjct: 75 SAEINNNYGWFLCGRLNRPAESMAYFDKA 103
Score = 43.0 bits (102), Expect = 2e-05
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 52 TNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
T A+ Y++ + Y AL+ +P A + + D+A + ++A +
Sbjct: 12 TQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI 71
Query: 112 SR---EQNLNYG 120
E N NYG
Sbjct: 72 KPDSAEINNNYG 83
Score = 37.6 bits (88), Expect = 0.002
Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 4/98 (4%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G Q+ A R++ P P F A + Q +K
Sbjct: 120 GICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV 179
Query: 81 LVKAQFFLG-QALHEINHYDEAVKH---LQRAYDLSRE 114
L LG + + + A ++ LQ + S E
Sbjct: 180 LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217
Score = 27.2 bits (61), Expect = 4.3
Identities = 5/36 (13%), Positives = 10/36 (27%)
Query: 76 ELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
E + + L Y +A ++ A
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS 37
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 60.7 bits (148), Expect = 3e-11
Identities = 19/88 (21%), Positives = 33/88 (37%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G Y E+A +A+ +P A+ + + ++ RKAL +
Sbjct: 44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
+ G L+E Y+EA + L A
Sbjct: 104 NARVLNNYGGFLYEQKRYEEAYQRLLEA 131
Score = 50.7 bits (122), Expect = 8e-08
Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE--LE 78
+ + + A Y +A+ + N + K+Y +A + L
Sbjct: 78 AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY 137
Query: 79 PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
P + LG ++ +A ++ +++ L
Sbjct: 138 PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170
Score = 46.9 bits (112), Expect = 2e-06
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 1/80 (1%)
Query: 29 QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFL 88
+ N + + L YL+ RKALE++PS A L
Sbjct: 19 SHMGDQN-PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAAL 77
Query: 89 GQALHEINHYDEAVKHLQRA 108
A + ++A
Sbjct: 78 AVVFQTEMEPKLADEEYRKA 97
Score = 45.0 bits (107), Expect = 7e-06
Identities = 11/88 (12%), Positives = 27/88 (30%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G +++ +A + +++ N PS A K ++YV +
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
++ + D A + +
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQL 235
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 59.1 bits (144), Expect = 8e-11
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G Y L + ++A +A+ A YL + + KALE P
Sbjct: 125 GLVYALLGERDKAEASLKQALALEDTPEIRS-ALAELYLSMGRLDEALAQYAKALEQAPK 183
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYD 110
+ + AL +EA + +
Sbjct: 184 DLDLRVRYASALLLKGKAEEAARAAALEHH 213
Score = 58.3 bits (142), Expect = 2e-10
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 11/99 (11%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G + + L +Y+ A+ + RA+ +NP P A LKL ++ + + P
Sbjct: 12 GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR 71
Query: 81 LVKAQFFLGQALHEINH-----------YDEAVKHLQRA 108
+ L +A + ++A+ L+ A
Sbjct: 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA 110
Score = 56.4 bits (137), Expect = 6e-10
Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 11/99 (11%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCC-----------D 69
L A+ + + P + + Y+ L +
Sbjct: 46 ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105
Query: 70 DCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
+ A + P G + D+A L++A
Sbjct: 106 VLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQA 144
Score = 43.3 bits (103), Expect = 2e-05
Identities = 8/56 (14%), Positives = 23/56 (41%)
Query: 53 NRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
+ L +Y +AL+ P +A ++L + ++ + A+++ +
Sbjct: 10 RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTL 65
Score = 27.1 bits (61), Expect = 4.7
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 84 AQFFLGQALHEINHYDEAVKHLQRA 108
LG L+ + YD A+ +RA
Sbjct: 7 NPLRLGVQLYALGRYDAALTLFERA 31
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 60.4 bits (146), Expect = 9e-11
Identities = 19/134 (14%), Positives = 42/134 (31%), Gaps = 7/134 (5%)
Query: 28 RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVH-CCDDCRKALELEPSLVKAQF 86
+ E+ + + V + Y KA++LEP LV+A
Sbjct: 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWN 141
Query: 87 FLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQE 146
LG+ + A A L+ +N L + ++ ++ ++
Sbjct: 142 QLGEVYWKKGDVTSAHTCFSGA--LTHCKN----KVSLQNLSMVLRQLQTDSGDEHSRHV 195
Query: 147 IELLTYLNRLITED 160
++ + + D
Sbjct: 196 MDSVRQAKLAVQMD 209
Score = 58.9 bits (142), Expect = 3e-10
Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 3/102 (2%)
Query: 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSY---FTNRALCYLKLKQYVH 66
L + L N + ++A++ Y +A + S NRA + + Y
Sbjct: 217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGE 276
Query: 67 CCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
+ +A L+P+ + Q Q L ++ ++ +
Sbjct: 277 ALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318
Score = 52.3 bits (125), Expect = 5e-08
Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 14/103 (13%)
Query: 28 RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87
EA ++A+ P + + Y K AL + +
Sbjct: 117 DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQN 175
Query: 88 LGQALHEI---------NHYDEAVKHLQRAYDLSREQNLNYGD 121
L L ++ H ++V+ + A + ++ G
Sbjct: 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----DVLDGR 214
Score = 48.5 bits (115), Expect = 9e-07
Identities = 16/115 (13%), Positives = 38/115 (33%), Gaps = 18/115 (15%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCC---------DDC 71
G Y+ A C++ A+ S N ++ +L+
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ-NLSMVLRQLQTDSGDEHSRHVMDSVRQA 202
Query: 72 RKALELEPSLVKAQFFLGQAL--------HEINHYDEAVKHLQRAYDLSREQNLN 118
+ A++++ ++ + LG A +A+ +A + R+ + N
Sbjct: 203 KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257
Score = 46.9 bits (111), Expect = 2e-06
Identities = 12/102 (11%), Positives = 25/102 (24%), Gaps = 11/102 (10%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYL-----------KLKQYVHCCD 69
+ R +++ A+ + + + YL +Q +
Sbjct: 186 DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA 245
Query: 70 DCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
K S Y EA++ +A L
Sbjct: 246 QAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287
Score = 38.5 bits (89), Expect = 0.002
Identities = 11/100 (11%), Positives = 26/100 (26%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+ Y EA+ +++A +P P L + + K +
Sbjct: 265 ATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQ 324
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
+ + ++ + +L L G
Sbjct: 325 SMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQPG 364
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 60.4 bits (146), Expect = 1e-10
Identities = 15/95 (15%), Positives = 27/95 (28%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G L + + +A P + L+ +A L P
Sbjct: 301 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPD 360
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
V A G + + L +A+ L+ +Q
Sbjct: 361 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395
Score = 60.4 bits (146), Expect = 1e-10
Identities = 13/95 (13%), Positives = 25/95 (26%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
L + + +A P + L+ +A L P
Sbjct: 199 NGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPD 258
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
V A + + L +A+ L+ +Q
Sbjct: 259 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ 293
Score = 60.0 bits (145), Expect = 2e-10
Identities = 14/95 (14%), Positives = 26/95 (27%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
L + + +A P + L+ +A L P
Sbjct: 233 DGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPD 292
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
V A G + + L +A+ L+ +Q
Sbjct: 293 QVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQ 327
Score = 57.0 bits (137), Expect = 1e-09
Identities = 14/95 (14%), Positives = 27/95 (28%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G L + + +A V + L+ +A L P+
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
V A + + L +A+ L+ +Q
Sbjct: 632 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666
Score = 56.6 bits (136), Expect = 2e-09
Identities = 13/95 (13%), Positives = 25/95 (26%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
L + + +A P + L+ +A L P
Sbjct: 267 IGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPD 326
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
V A + + L +A+ L+ +Q
Sbjct: 327 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 361
Score = 55.4 bits (133), Expect = 5e-09
Identities = 16/124 (12%), Positives = 34/124 (27%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
L + + +A P + L+ +A L P
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPD 665
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEE 140
V A G + + L +A+ L++EQ + + + + +R
Sbjct: 666 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLC 725
Query: 141 KRIA 144
+
Sbjct: 726 QAHG 729
Score = 55.0 bits (132), Expect = 7e-09
Identities = 13/95 (13%), Positives = 24/95 (25%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G L + + +A P + L+ +A L
Sbjct: 538 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQV 597
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
V A + + L +A+ L+ Q
Sbjct: 598 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632
Score = 52.3 bits (125), Expect = 6e-08
Identities = 14/95 (14%), Positives = 26/95 (27%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
L + + +A P + L+ +A L P
Sbjct: 504 IGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 563
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
V A G + + L +A+ L++ Q
Sbjct: 564 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQ 598
Score = 52.0 bits (124), Expect = 8e-08
Identities = 12/95 (12%), Positives = 24/95 (25%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
L + + +A P + L+ +A L
Sbjct: 640 DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQE 699
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
V A + + L +A+ L+ +Q
Sbjct: 700 QVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQ 734
Score = 51.6 bits (123), Expect = 1e-07
Identities = 12/95 (12%), Positives = 24/95 (25%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
L + + + P + L+ +A L P
Sbjct: 436 DGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPD 495
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
V A + + L +A+ L+ +Q
Sbjct: 496 QVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ 530
Score = 51.2 bits (122), Expect = 1e-07
Identities = 14/99 (14%), Positives = 27/99 (27%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
L ++ + +A P + L +A L P
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPD 529
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNY 119
V A G + + L +A+ L+ +Q +
Sbjct: 530 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 568
Score = 50.8 bits (121), Expect = 2e-07
Identities = 16/124 (12%), Positives = 33/124 (26%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G L + + +A + L+ +A L P
Sbjct: 674 GGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPD 733
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEE 140
V A G + + L +A+ L+ Q + +I + + +R
Sbjct: 734 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLC 793
Query: 141 KRIA 144
+
Sbjct: 794 QDHG 797
Score = 49.6 bits (118), Expect = 4e-07
Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 1/95 (1%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
L + + +A P + L+ +A L P
Sbjct: 335 DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 394
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
V A G + + L +A+ L+ +Q
Sbjct: 395 QVVAIASNGGK-QALETVQRLLPVLCQAHGLTPDQ 428
Score = 47.3 bits (112), Expect = 2e-06
Identities = 12/93 (12%), Positives = 27/93 (29%)
Query: 27 LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86
L + + +A P + L+ + L P+ V A
Sbjct: 408 LETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIA 467
Query: 87 FLGQALHEINHYDEAVKHLQRAYDLSREQNLNY 119
+ + + L +A+ L+ +Q +
Sbjct: 468 SHDGGKQALETVQQLLPVLCQAHGLTPDQVVAI 500
Score = 46.9 bits (111), Expect = 3e-06
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 5/95 (5%)
Query: 26 GLRQYEEAINCYTRAIIK-----NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G EA++ A+ P + L+ +A L P+
Sbjct: 165 GGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPA 224
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
V A + + L +A+ L +Q
Sbjct: 225 QVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQ 259
Score = 43.9 bits (103), Expect = 3e-05
Identities = 12/89 (13%), Positives = 24/89 (26%)
Query: 27 LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86
L + + +A P + L+ +A L P+ V A
Sbjct: 714 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIA 773
Query: 87 FLGQALHEINHYDEAVKHLQRAYDLSREQ 115
+ + L + + L+ Q
Sbjct: 774 SNIGGKQALETVQRLLPVLCQDHGLTLAQ 802
Score = 40.8 bits (95), Expect = 3e-04
Identities = 14/124 (11%), Positives = 34/124 (27%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
G L + + +A P + L+ + L +
Sbjct: 742 GGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLA 801
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEE 140
V A + + L +A+ L+++Q + +I + + +R
Sbjct: 802 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLC 861
Query: 141 KRIA 144
+
Sbjct: 862 QDHG 865
Score = 30.8 bits (69), Expect = 0.57
Identities = 11/119 (9%), Positives = 27/119 (22%), Gaps = 3/119 (2%)
Query: 2 SKSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKL 61
+ H T + + + L + + + + L
Sbjct: 861 CQDHGLTPDQV--VAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGG-KQAL 917
Query: 62 KQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
+ + L P V A + + L + + L+ Q +
Sbjct: 918 ETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIA 976
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 55.5 bits (134), Expect = 3e-10
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Query: 29 QYEEAINCYTRAIIKNPVIPSYFT---NRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ 85
+A+ Y +AI + L +Y ++ P+ +
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 86 FFLGQALHEINHYDEAVKHLQRA 108
F L+ + Y++ V+ L +
Sbjct: 65 VFYAMVLYNLGRYEQGVELLLKI 87
Score = 40.5 bits (95), Expect = 6e-05
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 13/91 (14%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE-LEP 79
G+ + L +Y +A + + P + A+ L +Y + +E L
Sbjct: 34 GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRY-------EQGVELLLK 86
Query: 80 SLVKAQFFLGQALHEINHYDEAVKHLQRAYD 110
+ + I Y +A+ D
Sbjct: 87 IIAET-----SDDETIQSYKQAILFYADKLD 112
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 57.3 bits (138), Expect = 1e-09
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 24 YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVH---CCDDCRKALELEPS 80
G Q E A C+ +A+ K P P + + A+ +L + D R+A+ L P
Sbjct: 148 KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207
Query: 81 LVKAQFFLGQALHEI----NHYDEAVKHLQRAYDL 111
+ L LH++ E K ++ A +
Sbjct: 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK 242
Score = 54.6 bits (131), Expect = 8e-09
Identities = 18/110 (16%), Positives = 32/110 (29%), Gaps = 19/110 (17%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK-------------------L 61
Y + ++AI +A+ P CY L
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313
Query: 62 KQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
+ H +KA E +L + L + Y+EA + Q+ +
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363
Score = 52.6 bits (126), Expect = 3e-08
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 23 RYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDD----CRKALELE 78
R + AI+ +AI NP AL K+++ + +ALE
Sbjct: 184 RLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA 243
Query: 79 PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
P + + + D+A++ L++A +
Sbjct: 244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276
Score = 44.9 bits (106), Expect = 1e-05
Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 5/99 (5%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+ E A+ K P + + A Y + + + +KALE P+
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279
Query: 81 LVKAQFFLG-----QALHEINHYDEAVKHLQRAYDLSRE 114
+G + +N + + ++ +L
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGH 318
Score = 44.5 bits (105), Expect = 2e-05
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 4/103 (3%)
Query: 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCD 69
+ + + L A+ +A N + + A + QY
Sbjct: 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEY 355
Query: 70 DCRKALELEPSLVKAQ---FFLGQAL-HEINHYDEAVKHLQRA 108
+K E + V Q G +++ D+A+ H
Sbjct: 356 YFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398
Score = 41.8 bits (98), Expect = 1e-04
Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 10/91 (10%)
Query: 24 YFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK 83
+ ++ ++AI+ + + N + KL++ + L + +
Sbjct: 382 LYQMKCEDKAIHHFIEGVKINQ----KSREKEKMKDKLQKIA------KMRLSKNGADSE 431
Query: 84 AQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
A L +A + +R +
Sbjct: 432 ALHVLAFLQELNEKMQQADEDSERGLESGSL 462
Score = 31.8 bits (72), Expect = 0.20
Identities = 13/110 (11%), Positives = 24/110 (21%), Gaps = 19/110 (17%)
Query: 21 GNRYFGLRQYEEAINCYTRAII---------KNPVIPSYFTNRALCYLKLKQYVHCCDDC 71
Q E A+ C +A + N A Y + +
Sbjct: 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117
Query: 72 RKALELEPSLVKA--------QFFLGQALHEI--NHYDEAVKHLQRAYDL 111
K + G + N + A ++A +
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK 167
Score = 29.5 bits (66), Expect = 1.2
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 69 DDCRKALELEPSLVKAQFF--LGQALHEINHYDEAVKHLQRAYDLSREQNLNYGD 121
D E + KA L H + A++ L++A +L ++++ + +
Sbjct: 36 DKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAE 90
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 54.5 bits (130), Expect = 1e-09
Identities = 20/144 (13%), Positives = 38/144 (26%), Gaps = 23/144 (15%)
Query: 18 KDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSY------------FTNRALCYLKLKQYV 65
+ R +Y+EA RA+ + +P A L+ +
Sbjct: 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFD 74
Query: 66 HCCDDCRKAL-------ELEPS----LVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
KAL EL + A + AL + EA+ ++ ++ E
Sbjct: 75 EALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134
Query: 115 QNLNYGDDIACQLRIAKKKRWAET 138
+ +
Sbjct: 135 RKGETPGKERMMEVAIDRIAQLGA 158
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 53.3 bits (128), Expect = 6e-09
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 3/97 (3%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCD---DCRKALEL 77
G Y Y ++ Y +A+ + A KAL L
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110
Query: 78 EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
+ + + A L +Y +A++ Q+ DL+
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147
Score = 41.0 bits (96), Expect = 9e-05
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 3/96 (3%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
+D +++ + E + I NP + YL Y + R+AL
Sbjct: 12 RQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQAL 71
Query: 76 ELEPSLVKAQFFLGQALHEINHY---DEAVKHLQRA 108
+L + L L+ + + +A
Sbjct: 72 QLRGENAELYAALATVLYYQASQHMTAQTRAMIDKA 107
Score = 35.2 bits (81), Expect = 0.009
Identities = 12/69 (17%), Positives = 22/69 (31%)
Query: 72 RKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAK 131
+ + P + LG+ N Y ++ ++A L E Y A
Sbjct: 34 QDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS 93
Query: 132 KKRWAETEE 140
+ A+T
Sbjct: 94 QHMTAQTRA 102
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase,
UBL conjugation pathway; NMR {Mus musculus}
Length = 85
Score = 48.5 bits (116), Expect = 5e-08
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 215 GHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWA 250
DP R L+ L P +KE + +++E +
Sbjct: 48 SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQSS 83
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 48.4 bits (116), Expect = 6e-08
Identities = 14/75 (18%), Positives = 32/75 (42%)
Query: 42 IKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEA 101
+++P P A +LK + +E +P V + LG+ ++ D+A
Sbjct: 1 MEDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA 60
Query: 102 VKHLQRAYDLSREQN 116
+ + +++RE+
Sbjct: 61 IDTYAQGIEVAREEG 75
Score = 44.6 bits (106), Expect = 1e-06
Identities = 10/87 (11%), Positives = 27/87 (31%), Gaps = 4/87 (4%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNP-VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEP 79
+ A+ + + +P + +Y+ + Y +L + D + +E+
Sbjct: 14 AQEHLKHDNASRALALFEELVETDPDYVGTYY-HLGKLYERLDRTDDAIDTYAQGIEVAR 72
Query: 80 SLVKAQFF--LGQALHEINHYDEAVKH 104
+ L A + + H
Sbjct: 73 EEGTQKDLSELQDAKLKAEGLEHHHHH 99
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 48.2 bits (116), Expect = 7e-08
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCD 69
NL GN Y+ Y+EAI Y +A+ +P + N Y K Y +
Sbjct: 13 YNL--------GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 70 DCRKALELEPSLVKAQFFLGQALHE 94
+KALEL+P+ +A+ LG A +
Sbjct: 65 YYQKALELDPNNAEAKQNLGNAKQK 89
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.2
Length = 98
Score = 47.5 bits (113), Expect = 1e-07
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 215 GHFDPVTRVKLSADQLIPNFAMKEVVDNFLQEN 247
DP R L+ DQ+ PN +KE + +L E
Sbjct: 57 DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER 89
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin
ligase, E4 polyubiquitin chain EL factor,
phosphoprotein, UBL conjugation pathway; NMR {Homo
sapiens} PDB: 3l1x_A 3l1z_B
Length = 100
Score = 46.6 bits (111), Expect = 3e-07
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 215 GHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWA 250
DP R L+ L P +KE + +++E +
Sbjct: 63 SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQNS 98
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 49.8 bits (119), Expect = 3e-07
Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 13/131 (9%)
Query: 3 KSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIP------SYFTNRAL 56
T L L G F ++Y EAI Y A + P + + A
Sbjct: 90 TPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAE 149
Query: 57 CYLKLKQYVHCCDDCRKALEL-------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAY 109
Y +KQ +AL++ +++ F + + HYD+A+ HL+ A
Sbjct: 150 AYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL 209
Query: 110 DLSREQNLNYG 120
+L+ + +
Sbjct: 210 ELAMDIQNDRF 220
Score = 45.2 bits (107), Expect = 8e-06
Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 15/114 (13%)
Query: 21 GNRYFGLRQYEEAINCYTRAI--------IKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
Y+ ++Q ++ +A+ I S F A Y K Y
Sbjct: 148 AEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF-VIAGNYDDFKHYDKALPHLE 206
Query: 73 KALEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
ALEL + + + + + AV+H Q+A +SRE+ +
Sbjct: 207 AALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260
Score = 38.3 bits (89), Expect = 0.001
Identities = 13/103 (12%), Positives = 28/103 (27%), Gaps = 6/103 (5%)
Query: 21 GNRYFGLRQYEEAINCYTRAI-----IKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
N Y + A+ + +A ++P + K Q + L
Sbjct: 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288
Query: 76 ELEPSL-VKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNL 117
+ + K L L + + + ++NL
Sbjct: 289 DHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL 331
Score = 37.9 bits (88), Expect = 0.002
Identities = 8/105 (7%), Positives = 20/105 (19%), Gaps = 15/105 (14%)
Query: 21 GNRYFGLRQYEEAINCYTRAI-----IKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKAL 75
Q ++A + + F Y + L
Sbjct: 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE----RKIHDLL 323
Query: 76 E------LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
L + H+++A ++ +
Sbjct: 324 SYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQED 368
Score = 36.7 bits (85), Expect = 0.005
Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 8/118 (6%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFT--NRALCYLKLKQYVHCCDDCRKALEL- 77
G Y E + K + Y++ R + K+YV R+A +
Sbjct: 72 GKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKEL 131
Query: 78 -----EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIA 130
+ + F + +A + + ++ H+ +A D+ + L I IA
Sbjct: 132 PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189
Score = 31.3 bits (71), Expect = 0.25
Identities = 12/119 (10%), Positives = 31/119 (26%), Gaps = 21/119 (17%)
Query: 19 DEGNRYFGLRQYEEAINCYTRA------IIKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
+E + +A + ++ + Y++ + + Y+
Sbjct: 17 NEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYG 76
Query: 73 KALELEPSLVKAQ---------------FFLGQALHEINHYDEAVKHLQRAYDLSREQN 116
+ L + FF G + Y EA+ + + A +
Sbjct: 77 NRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVS 135
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 48.7 bits (116), Expect = 7e-07
Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 13/113 (11%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIP------SYFTNRALCYLKLKQYVHCCDDCRKA 74
G R+Y AI + +A K + +F + Y +KQ D R+A
Sbjct: 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169
Query: 75 LEL-------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
E+ L++ ++ Y++A+ H Q+AY ++ +
Sbjct: 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222
Score = 46.7 bits (111), Expect = 2e-06
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 21 GNRYFGLRQYEEAINCYTRAI-----IKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
+ L+QYE+AI+ + +A K ++ N LC QY ++A
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250
Query: 75 LEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116
+ + PSL +A F + Q +++ D+A ++ + S++
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG 298
Score = 45.2 bits (107), Expect = 8e-06
Identities = 18/114 (15%), Positives = 44/114 (38%), Gaps = 15/114 (13%)
Query: 21 GNRYFGLRQYEEAINCYTRAI--------IKNPVIPSYFTNRALCYLKLKQYVHCCDDCR 72
Y+ ++Q +++ +A ++ + A +L LKQY +
Sbjct: 150 SESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS-LFATNFLDLKQYEDAISHFQ 208
Query: 73 KALEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
KA + + + + +G + + Y++A+ + +RA + E N+
Sbjct: 209 KAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262
Score = 28.6 bits (64), Expect = 2.2
Identities = 15/125 (12%), Positives = 35/125 (28%), Gaps = 23/125 (18%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRA------IIKNPVIPSYFTNRALCYLKLKQYVHCC 68
E +E Y +A + ++ + Y++ + + +Y+
Sbjct: 13 GEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPL 72
Query: 69 DDCRKALELEPSLVKAQ-----------------FFLGQALHEINHYDEAVKHLQRAYDL 111
+ R + S + + FF G + Y A+K ++A
Sbjct: 73 EKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESK 132
Query: 112 SREQN 116
Sbjct: 133 LIFVK 137
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 46.3 bits (109), Expect = 1e-06
Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 19 DEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYV----------HCC 68
D + + +E+ NP+ T L+L Q+
Sbjct: 7 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 66
Query: 69 DDCRKALELEPSLVKAQFFLGQALHEI-----------NHYDEAVKHLQRAYDL 111
+AL ++P +A + +G A +++D A + Q+A D
Sbjct: 67 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin
ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana}
SCOP: g.44.1.2
Length = 78
Score = 44.1 bits (105), Expect = 1e-06
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 206 AIDERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQEN 247
+I + P ++ L L PN+ +K ++ + + N
Sbjct: 34 SIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESN 75
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 46.9 bits (112), Expect = 2e-06
Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 10/109 (9%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKN----PVIPSYFTNRALCYLKLKQYVHCCDDC 71
EL EG R ++ + A+ + + ++ Y L Y +
Sbjct: 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYH 70
Query: 72 RKALEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
L L + KA LG L + ++DEA+ QR D+SRE
Sbjct: 71 HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 119
Score = 45.8 bits (109), Expect = 5e-06
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 12/116 (10%)
Query: 21 GNRYFGLRQYEEAINCYTRAI-----IKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
GN Y L ++E A Y + + +K+ V + Y L+ Y D K
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293
Query: 75 LEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIA 124
L + +A + LG A + ++D+A+ ++ ++SRE G+ A
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTA 349
Score = 43.8 bits (104), Expect = 3e-05
Identities = 16/106 (15%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Query: 21 GNRYFGLRQYEEAINCYTRAI-IK-----NPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
GN ++ L + +A+ + + + I ++N Y+ L ++ + +K
Sbjct: 194 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253
Query: 75 LEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
L L ++ + LG + Y++A+ + + +++E
Sbjct: 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299
Score = 33.0 bits (76), Expect = 0.073
Identities = 15/100 (15%), Positives = 21/100 (21%), Gaps = 20/100 (20%)
Query: 21 GNRYFGLRQYEEAINCYTRA------IIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
GN L ++EAI C R + N Y + C
Sbjct: 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVG 153
Query: 75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
E + AV + L
Sbjct: 154 EFPEEVR--------------DALQAAVDFYEENLSLVTA 179
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 46.9 bits (112), Expect = 3e-06
Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 10/109 (9%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAI-IKN---PVIPSYFTNRALCYLKLKQYVHCCDDC 71
EL EG R + + AI + + ++ Y L Y
Sbjct: 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYH 109
Query: 72 RKALEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
+ L L K+ LG L + +DEA +R L+R+
Sbjct: 110 KHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQ 158
Score = 45.0 bits (107), Expect = 1e-05
Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 20/115 (17%)
Query: 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRA------IIKNPVIPSYFTNRALCYLKLKQ 63
+NL GN + L Q+E+A Y R + + V + Y L +
Sbjct: 267 SNL--------GNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE 318
Query: 64 YVHCCDDCRKALEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112
+ + + L + +A + LG A I ++ A+K+ ++ L+
Sbjct: 319 FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373
Score = 44.2 bits (105), Expect = 2e-05
Identities = 19/117 (16%), Positives = 44/117 (37%), Gaps = 20/117 (17%)
Query: 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAI-IK-----NPVIPSYFTNRALCYLKLKQ 63
NL GN Y+ L ++ AI + + I +N ++ L Q
Sbjct: 227 GNL--------GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278
Query: 64 YVHCCDDCRKALEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
+ + ++ L L ++ + LG ++ ++ A+++ R +++E
Sbjct: 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335
Score = 39.6 bits (93), Expect = 6e-04
Identities = 17/123 (13%), Positives = 42/123 (34%), Gaps = 29/123 (23%)
Query: 21 GNRYFGLRQYEEAINCYTRAI-----IKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
GN + +++EA C R + + + N Y +++ + +
Sbjct: 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFG 192
Query: 75 LELEPSLVKAQFFLGQAL-----------------------HEINHYDEAVKHLQRAYDL 111
+++ +L +A F + L + + + A++H Q +
Sbjct: 193 DDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252
Query: 112 SRE 114
+RE
Sbjct: 253 ARE 255
Score = 39.6 bits (93), Expect = 7e-04
Identities = 13/107 (12%), Positives = 29/107 (27%), Gaps = 10/107 (9%)
Query: 20 EGNRYFGLRQYEEAINCYTRAIIK------NPVIPSYFTNRALCYLKLKQYVHCCDDCRK 73
E GL N + + + +
Sbjct: 14 ENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQA 73
Query: 74 ALELE----PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116
A++ +L LG A + Y++A+++ + L++ N
Sbjct: 74 AIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN 120
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 46.5 bits (111), Expect = 3e-06
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 10/109 (9%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAI-IKN---PVIPSYFTNRALCYLKLKQYVHCCDDC 71
EL EG R ++ + A+ + + + ++ Y L Y +
Sbjct: 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYH 66
Query: 72 RKALEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
L L + KA LG L + ++DEA+ QR D+SRE
Sbjct: 67 HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 115
Score = 46.1 bits (110), Expect = 4e-06
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 21 GNRYFGLRQYEEAINCYTRAI-----IKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
GN Y L ++E A Y + + +K+ V + Y L+ Y D K
Sbjct: 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289
Query: 75 LEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
L + +A + LG A + ++D+A+ ++ ++SRE
Sbjct: 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335
Score = 43.0 bits (102), Expect = 4e-05
Identities = 16/106 (15%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Query: 21 GNRYFGLRQYEEAINCYTRAI-IK-----NPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
GN ++ L + +A+ + + + I ++N Y+ L ++ + +K
Sbjct: 190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249
Query: 75 LEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
L L ++ + LG + Y++A+ + + +++E
Sbjct: 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295
Score = 32.2 bits (74), Expect = 0.13
Identities = 16/100 (16%), Positives = 23/100 (23%), Gaps = 20/100 (20%)
Query: 21 GNRYFGLRQYEEAINCYTRAI-----IKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
GN L ++EAI C R + + + N Y + C
Sbjct: 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTG 149
Query: 75 LELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
E N AV + L
Sbjct: 150 EFPEDVR--------------NALQAAVDLYEENLSLVTA 175
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 46.2 bits (109), Expect = 4e-06
Identities = 11/81 (13%), Positives = 27/81 (33%)
Query: 28 RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87
+ E +N T I + P + +R + L+ + L + A
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205
Query: 88 LGQALHEINHYDEAVKHLQRA 108
+ E +D ++++ +
Sbjct: 206 RQWVIQEFKLWDNELQYVDQL 226
Score = 40.1 bits (93), Expect = 4e-04
Identities = 9/88 (10%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
Query: 27 LRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQF 86
LR + + + ++ + +R + K + + + L+ +
Sbjct: 179 LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN 238
Query: 87 FLGQALHEINHYDEAVKHLQRAYDLSRE 114
+ Y++ L+R + E
Sbjct: 239 QRYFVISNTTGYNDR-AVLEREVQYTLE 265
Score = 37.7 bits (87), Expect = 0.003
Identities = 9/81 (11%), Positives = 25/81 (30%), Gaps = 1/81 (1%)
Query: 29 QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQ-YVHCCDDCRKALELEPSLVKAQFF 87
+ E A AI N + + R + L++ + +E +P +
Sbjct: 112 RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171
Query: 88 LGQALHEINHYDEAVKHLQRA 108
+ + + ++ +
Sbjct: 172 RRVLVEWLRDPSQELEFIADI 192
Score = 33.1 bits (75), Expect = 0.071
Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 25/149 (16%)
Query: 17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS--YFTNRALCYLKLKQYVHCCDDCRKA 74
+ Y E + I P S + L L +Y + + +
Sbjct: 243 VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLN---QL 299
Query: 75 LELEPSL-----------VKAQFFLGQALHEINHYDEAVKH---LQRAYDLSREQNLNYG 120
L+L+PS + Q ++ + ++A++ L + D R+ Y
Sbjct: 300 LDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRK---EYW 356
Query: 121 DDIACQLRIAKKKRWAETEEKRIAQEIEL 149
I L+ E + Q+ E
Sbjct: 357 RYIGRSLQSKHS---TENDSPTNVQQEEF 382
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 44.7 bits (105), Expect = 1e-05
Identities = 9/87 (10%), Positives = 25/87 (28%)
Query: 22 NRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL 81
+ G + ++A + K +A C++ ++ ++AL+ +
Sbjct: 174 SLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233
Query: 82 VKAQFFLGQALHEINHYDEAVKHLQRA 108
+ L + E
Sbjct: 234 PETLINLVVLSQHLGKPPEVTNRYLSQ 260
Score = 35.1 bits (80), Expect = 0.014
Identities = 8/91 (8%), Positives = 22/91 (24%), Gaps = 2/91 (2%)
Query: 24 YFGLRQYEEAINCYTRAIIKNP--VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL 81
L + + A + ++ + T ++ ++ +
Sbjct: 140 LLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT 199
Query: 82 VKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112
+ ++ A LQ A D
Sbjct: 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230
Score = 30.5 bits (68), Expect = 0.42
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+ ++E A A+ K+ P N + L + + L+
Sbjct: 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK---D 263
Query: 81 LVKAQFFLGQALHEINHYDEAVKH 104
++ F+ + + N +D V
Sbjct: 264 AHRSHPFIKEYRAKENDFDRLVLQ 287
Score = 28.6 bits (63), Expect = 2.1
Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 10/98 (10%)
Query: 17 LKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE 76
L R + + + + + + ++ A Y + +
Sbjct: 75 LASHSRRDAIVAELDREM-----SRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS 129
Query: 77 LEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
LE + Q L +++ D A K L++ D +
Sbjct: 130 LECMAMTVQ-----ILLKLDRLDLARKELKKMQDQDED 162
Score = 27.8 bits (61), Expect = 3.8
Identities = 25/153 (16%), Positives = 44/153 (28%), Gaps = 9/153 (5%)
Query: 24 YFGLRQYEEAINCYTRAIIKNP-VIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLV 82
F + Y++ IN R +P YL ++Y D+ + + E V
Sbjct: 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAV 68
Query: 83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN-----LNYGDDIACQLRIAKKKRWAE 137
+ + L + D V L R S + L R
Sbjct: 69 RM---FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125
Query: 138 TEEKRIAQEIELLTYLNRLITEDAEKELGSIRR 170
+ + + L + A KEL ++
Sbjct: 126 QGDSLECMAMTVQILLKLDRLDLARKELKKMQD 158
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 43.3 bits (103), Expect = 1e-05
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 21 GNRYFGLRQYEEAINCYTRAI-----IKN-PVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
GN Y L ++E A Y + + +K+ V + Y L+ Y D K
Sbjct: 56 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115
Query: 75 LEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
L + +A + LG A + ++D+A+ ++ ++SRE
Sbjct: 116 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161
Score = 39.4 bits (93), Expect = 3e-04
Identities = 15/106 (14%), Positives = 41/106 (38%), Gaps = 12/106 (11%)
Query: 21 GNRYFGLRQYEEAINCYTRA------IIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKA 74
GN ++ L + +A+ + + ++N Y+ L ++ + +K
Sbjct: 16 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75
Query: 75 LEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
L L ++ + LG + Y++A+ + + +++E
Sbjct: 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 121
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 43.4 bits (103), Expect = 2e-05
Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 13/113 (11%)
Query: 21 GNRYFGLRQYEEAINCYTRAII-------KNPVIPSYFTNRALCYLKLKQYVHCCDDCRK 73
G ++ A C+ + A L + K
Sbjct: 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132
Query: 74 ALEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
+L + ++ A LG + + EA +H RA D+ E +
Sbjct: 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEA 185
Score = 36.1 bits (84), Expect = 0.005
Identities = 7/114 (6%), Positives = 28/114 (24%), Gaps = 15/114 (13%)
Query: 21 GNRYFGLRQYEEAINCYTRAI-----IKNP--VIPSYFTNRALCYLKLKQYVHCCDDCRK 73
G Y + +++EA + + + + + +
Sbjct: 33 GYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRAL-HQVGMVERMAGNWDAARRCFLE 91
Query: 74 ALEL-------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYG 120
EL + + + A + +++ +++ +
Sbjct: 92 ERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA 145
Score = 30.3 bits (69), Expect = 0.40
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 72 RKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116
+ L + A+F LG ++ +DEA Q +++
Sbjct: 16 QALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG 60
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 44.3 bits (104), Expect = 2e-05
Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 3/87 (3%)
Query: 28 RQYEEAINCYTRA--IIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQ 85
+Q + + + + +A+ L + ++LE S +
Sbjct: 255 KQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NY 313
Query: 86 FFLGQALHEINHYDEAVKHLQRAYDLS 112
LG+ EA A++L
Sbjct: 314 VLLGKVYEMKGMNREAADAYLTAFNLR 340
Score = 36.2 bits (83), Expect = 0.006
Identities = 12/95 (12%), Positives = 23/95 (24%), Gaps = 10/95 (10%)
Query: 28 RQYEEAINCYTRAIIKNPVIPSYFTNRALCY--------LKLKQYVHCCDDCRKALELEP 79
+ A + +P +AL L KQ + + L
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272
Query: 80 SLVKA--QFFLGQALHEINHYDEAVKHLQRAYDLS 112
+ + DE+ + + DL
Sbjct: 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307
Score = 33.9 bits (77), Expect = 0.045
Identities = 10/88 (11%), Positives = 18/88 (20%), Gaps = 3/88 (3%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPS 80
+ +E+ I +Y Y D A L P
Sbjct: 284 AVSALVKGKTDESYQAINTGIDLEMSWLNYV-LLGKVYEMKGMNREAADAYLTAFNLRPG 342
Query: 81 LVKAQFFLGQALHEINHYDEAVKHLQRA 108
+ + V +L +
Sbjct: 343 A--NTLYWIENGIFQTSVPYVVPYLDKF 368
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 44.0 bits (103), Expect = 3e-05
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 215 GHFDPVTRVKLSADQLIPNFAMKEVVDNFLQENDWAYE 252
DP R+ L + + PN +++ + F ++ +
Sbjct: 926 DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKEEAK 963
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 42.6 bits (100), Expect = 5e-05
Identities = 10/109 (9%), Positives = 29/109 (26%), Gaps = 12/109 (11%)
Query: 20 EGNRYFGLRQYEEAINCYTRAII------KNPVIPSYFTNRALCYLKLKQYVHCCDDCRK 73
+ +A++ Y +A + + ++ +++ +K
Sbjct: 121 RAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180
Query: 74 ALEL------EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116
+ P+ K Y A K ++ +Y +
Sbjct: 181 EKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSG 229
Score = 40.3 bits (94), Expect = 3e-04
Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 11/107 (10%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSY------FTNRALCYLKLKQYVHCCDDCRKA 74
+ +Q E+A + Y + + S F + L++ KA
Sbjct: 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA 102
Query: 75 LEL-----EPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116
+ P L E +AV Q+A + +
Sbjct: 103 SVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEE 149
Score = 33.3 bits (76), Expect = 0.061
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 20/93 (21%)
Query: 30 YEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSL------VK 83
Y+ A + Y +A A+ + KQ D + E + K
Sbjct: 32 YDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAK 77
Query: 84 AQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116
A G L ++ EAV+++++A + E
Sbjct: 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG 110
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha,
GFT-structural genomics, PSI-2, protein structure
initiative; NMR {Bacteroides fragilis}
Length = 99
Score = 38.1 bits (89), Expect = 3e-04
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 5/85 (5%)
Query: 16 ELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPS--YFTNRALCYLKLKQYVHCCDDCRK 73
+ E A+ + PV Y+ Y KL + ++ +
Sbjct: 2 DQLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYY-LMGNAYRKLGDWQKALNNYQS 60
Query: 74 ALELEP--SLVKAQFFLGQALHEIN 96
A+EL P ++A+ + L+ N
Sbjct: 61 AIELNPDSPALQARKMVMDILNFYN 85
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 9e-04
Identities = 41/215 (19%), Positives = 66/215 (30%), Gaps = 83/215 (38%)
Query: 98 YDEAVKHLQRAYDLS---------REQNLNYGDDIACQLR------IAKKKRWAETEEKR 142
++ A H + Y S +++G + ++R I + + + ++
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
Query: 143 IAQEIEL----LTY------LNR--------LITEDAE----KELGSIRRDA-------- 172
I +EI T+ L+ + E A K G I DA
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 173 E--------------------TKRLDGDAVQEAVMRIE-ARRDRSMAELNDLFVAI---D 208
E R G +Q AV R E R + M +N VA
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYR--GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 209 ERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNF 243
E + V V RV L+ E+V N+
Sbjct: 1824 EALQYV-----VERVGKRTGWLV------EIV-NY 1846
Score = 33.1 bits (75), Expect = 0.087
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 18/58 (31%)
Query: 196 SMAELNDL-----FVAIDERRRKVGHFDPVTRVKLSADQLIPNFAMKEVVDNFLQEND 248
+ AEL + +V+ KVG FD V + L E + +L+ ND
Sbjct: 56 TPAEL--VGKFLGYVSSLVEPSKVGQFDQVLNLCL-----------TEFENCYLEGND 100
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.001
Identities = 40/263 (15%), Positives = 77/263 (29%), Gaps = 63/263 (23%)
Query: 1 MSKSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK 60
+ ++ F + + ++ + R Y E + R N V Y +R YLK
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMT----RMYIEQRD---RLYNDNQVFAKYNVSRLQPYLK 139
Query: 61 LKQYVHCCDDCRKALELEPS-LVKAQFFLG---QALHEINHYDEAVKHLQRAYDLSREQN 116
L+Q LEL P+ V LG + A+ +
Sbjct: 140 LRQ---------ALLELRPAKNVLIDGVLGSGKTWV--------ALDVCL---SYKVQCK 179
Query: 117 LNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKR 176
+++ I W + + + L L +L+ + S + +
Sbjct: 180 MDFK--IF----------WLNLKNCNSPETV--LEMLQKLLY-QIDPNWTSRSDHSSNIK 224
Query: 177 LDGDAVQEAVMRIEARRDRSMAELNDLFVAIDE--RRRKVGHFDP------VTRVKLSAD 228
L ++Q + R+ + N L V + + F+ TR K D
Sbjct: 225 LRIHSIQAELRRLLKSKPYE----NCLLV-LLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 229 QLIPN----FAMKEVVDNFLQEN 247
L ++ +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDE 302
Score = 27.1 bits (59), Expect = 7.5
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 61 LKQYV-HCCDDCR------KALE-----LEPSLVKAQF--FLGQALHEINH--YDEAVKH 104
LK Y + CD+ A+ +E +L+ +++ L AL + ++EA K
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Query: 105 LQR 107
+QR
Sbjct: 587 VQR 589
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 36.7 bits (84), Expect = 0.005
Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 13/130 (10%)
Query: 3 KSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFT------NRAL 56
K + YE I + + + + A
Sbjct: 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163
Query: 57 CYLKLKQYVHCCDDCRKALELEPSL-------VKAQFFLGQALHEINHYDEAVKHLQRAY 109
Y + D + L+ +L VK ++ +AL+ + Y+E++ + +A
Sbjct: 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223
Query: 110 DLSREQNLNY 119
++S N
Sbjct: 224 EISCRINSMA 233
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 34.8 bits (81), Expect = 0.017
Identities = 12/129 (9%), Positives = 31/129 (24%), Gaps = 37/129 (28%)
Query: 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK---------NPVIPSYFTNRALCY 58
T NNL + Y ++++A Y + + + + +
Sbjct: 197 TKNNL--------ASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEERE 248
Query: 59 LKLKQYVHCCDDCRKALELE-------------PSLVKAQFFLGQALHEINHYDEAVKHL 105
+ + P++ LG ++ A
Sbjct: 249 ECKGKQ-------KDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301
Query: 106 QRAYDLSRE 114
+ A ++
Sbjct: 302 EAAMRSRKQ 310
Score = 34.4 bits (80), Expect = 0.022
Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 24/126 (19%)
Query: 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAII--------KNPVIPSYFTNRALCYL 59
T NNL Y +Y+EA RA+ +P + N AL
Sbjct: 113 TLNNL--------AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ 164
Query: 60 KLKQYVHCCDDCRKALELE--------PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
+Y ++ALE+ P++ K + L + + +A +
Sbjct: 165 NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224
Query: 112 SREQNL 117
+ E+
Sbjct: 225 AHEREF 230
Score = 30.2 bits (69), Expect = 0.58
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 35/135 (25%)
Query: 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAI--------IKNPVIPSYFTNRALCYL 59
T +NL +Y +YE A+ +A+ +P + + AL Y
Sbjct: 29 TLHNL--------VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR 80
Query: 60 KLKQYVHCCDD----CRKALELE--------PSLVKAQFFLGQALHEINHYDEAVKHLQR 107
+Y D AL + P++ L + Y EA +R
Sbjct: 81 DQNKY----KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR 136
Query: 108 AYDLSREQNLNYGDD 122
A ++ + G D
Sbjct: 137 ALEIREKV---LGKD 148
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 34.0 bits (79), Expect = 0.028
Identities = 14/116 (12%), Positives = 27/116 (23%), Gaps = 23/116 (19%)
Query: 8 TTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIK---------NPVIPSYFTNRALCY 58
T NNL + Y +Y++A Y + + N + +
Sbjct: 171 TKNNL--------ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEERE 222
Query: 59 LKLKQYVHCCDDCRKALELE------PSLVKAQFFLGQALHEINHYDEAVKHLQRA 108
+ + P++ LG + A A
Sbjct: 223 ESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278
Score = 32.1 bits (74), Expect = 0.12
Identities = 19/131 (14%), Positives = 34/131 (25%), Gaps = 38/131 (29%)
Query: 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAII--------KNPVIPSYFTNRALCYLKL 61
NNL Y +Y+EA RA+ +P + N AL
Sbjct: 89 NNL--------AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQ 140
Query: 62 KQYVHCCDDCRKALELE---------------PSLVKAQFFLGQALHEINHYDEAVKHLQ 106
+ + P++ K + L + Y +A +
Sbjct: 141 GKA-------EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYK 193
Query: 107 RAYDLSREQNL 117
+ E+
Sbjct: 194 EILTRAHEKEF 204
Score = 30.6 bits (70), Expect = 0.41
Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 29/130 (22%)
Query: 10 NNLSDKELKDEGNRYFGLRQYEEAINCYTRAI--------IKNP-VIPSYFTNRALCYLK 60
N L Y +Y+EA + A+ +P V + N A+ Y K
Sbjct: 47 NIL--------ALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATL-NNLAVLYGK 97
Query: 61 LKQYVHCCDDCRKALELE--------PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLS 112
+Y C++ALE+ P + K L +E + +RA ++
Sbjct: 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157
Query: 113 REQNLNYGDD 122
+ G D
Sbjct: 158 ATR---LGPD 164
Score = 27.1 bits (61), Expect = 4.9
Identities = 16/103 (15%), Positives = 26/103 (25%), Gaps = 31/103 (30%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE-P 79
+ GL A+ +A+ +D K + P
Sbjct: 8 HHHSSGLVPRGSAVPLCKQAL---------------------------EDLEKTSGHDHP 40
Query: 80 SLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDD 122
+ L + N Y EA L A + + G D
Sbjct: 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKT---LGKD 80
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase;
1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB:
1n87_A
Length = 61
Score = 30.8 bits (70), Expect = 0.053
Identities = 6/27 (22%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 206 AIDERRRKVGHFDPVTRVKLSADQLIP 232
+++ + G+ DP+T LS ++++
Sbjct: 30 LLEQYVKDTGN-DPITNEPLSIEEIVE 55
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 33.5 bits (76), Expect = 0.067
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 17/89 (19%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE---- 76
G+R + + Y+ A Y S F A + L +Y D RKA
Sbjct: 1202 GDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTW 1253
Query: 77 ---LEPSLVKAQFFLGQ--ALHEINHYDE 100
+ +F L Q LH + H DE
Sbjct: 1254 KEVCFACVDGKEFRLAQMCGLHIVVHADE 1282
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 33.0 bits (75), Expect = 0.074
Identities = 10/110 (9%), Positives = 22/110 (20%), Gaps = 14/110 (12%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYF------TNRALCYLKLKQYVHCCDDCRKA 74
G + ++ + + ++ + KA
Sbjct: 60 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 119
Query: 75 LELE--------PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116
+L P Q L DEA + ++
Sbjct: 120 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169
Score = 32.3 bits (73), Expect = 0.13
Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 11/115 (9%)
Query: 44 NPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE------LEPSLVKAQFFLGQALHEINH 97
N + + N A + L ++ + E L L + L Q +
Sbjct: 249 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308
Query: 98 YDEAVKHLQRAYDLSREQN-----LNYGDDIACQLRIAKKKRWAETEEKRIAQEI 147
+A + L A L+ + G+ +A QLR + E+ AQ I
Sbjct: 309 KSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRI 363
Score = 31.1 bits (70), Expect = 0.30
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 54 RALCYLKLKQYVHCCDDCRKALELEP-----SLVKAQFFLGQALHEINHYDEAVKHLQRA 108
RA + + ALE P S + A LG+ LH ++ +Q+
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79
Query: 109 YDLSREQNLNYG 120
++R+ ++ +
Sbjct: 80 EQMARQHDVWHY 91
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 32.6 bits (74), Expect = 0.080
Identities = 14/115 (12%), Positives = 35/115 (30%), Gaps = 9/115 (7%)
Query: 69 DDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQ---NLNYGDDIAC 125
+ +A++ P + + L ++ A + L ++ L E +
Sbjct: 18 ELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77
Query: 126 QLRIAKKKRWAETEEKRIAQE----IELLTYLNRLITEDAEKELGSIRRDAETKR 176
A+K ++ E + L N + +++ + E R
Sbjct: 78 AQ--ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 30.5 bits (69), Expect = 0.11
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 219 PVTRVK-LSADQLIPNFAMKEVVDNFLQEND 248
P +S D LI N +++ V+NF E
Sbjct: 54 PTCHQNDVSPDALIANKFLRQAVNNFKNETG 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 32.3 bits (73), Expect = 0.12
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 20/94 (21%)
Query: 29 QYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL------EPSLV 82
++EEA + +A A Y K+ D KA + E
Sbjct: 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAG 77
Query: 83 KAQFFLGQALHEINHYDEAVKHLQRAYDLSREQN 116
+ + AV L+ A + +
Sbjct: 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG 111
Score = 31.1 bits (70), Expect = 0.25
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIP-------SYFTNRALCYLKLKQYVHCCDDCRK 73
+ QY EA + Y++ I + YF + LC L V ++
Sbjct: 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224
Query: 74 ALELEPSL 81
+P+
Sbjct: 225 GQSEDPNF 232
Score = 31.1 bits (70), Expect = 0.31
Identities = 9/109 (8%), Positives = 31/109 (28%), Gaps = 13/109 (11%)
Query: 21 GNRYFGLRQYEEAINCYTRAII------KNPVIPSYFTNRALCYLKLKQY---VHCCDDC 71
Y ++ A + + +A + + C+ V ++
Sbjct: 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103
Query: 72 RKALELEPSLVKAQFFLGQA----LHEINHYDEAVKHLQRAYDLSREQN 116
+ + F + ++++ Y +A+ + A + +
Sbjct: 104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ 152
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2,
protein structure initiative; 2.15A {Vibrio
parahaemolyticus rimd 2210633}
Length = 93
Score = 29.8 bits (67), Expect = 0.22
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 72 RKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
+AL+LEP A + + EA+ D +
Sbjct: 33 EQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.24
Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 35/83 (42%)
Query: 131 KKKRWAETEEKRIAQEIELLTYLNRLITEDAEKELGSIRRDAETKRLDGDAVQEAVMRIE 190
++W E + KR+ + DA +K E R +
Sbjct: 86 SIRKWREEQRKRLQE------------------------LDAASKV------MEQEWREK 115
Query: 191 ARRDRSMAELNDLFVAIDERRRK 213
A++ +L + E+ K
Sbjct: 116 AKK-----DLEEWNQRQSEQVEK 133
Score = 28.2 bits (62), Expect = 2.1
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 13/66 (19%)
Query: 128 RIAKKKRWAETEEKRIAQEIELLT---------YLNRLITEDAEKELGSIRRDAET--KR 176
R ++KR E + E E + +E EK + R + ++
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ--SEQVEKNKINNRIADKAFYQQ 148
Query: 177 LDGDAV 182
D D +
Sbjct: 149 PDADII 154
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.33
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 7/35 (20%)
Query: 209 ERR--RKVGHFDPVTRVKLSADQLIPNFAMKEVVD 241
E++ +K+ +KL AD P A+K ++
Sbjct: 18 EKQALKKLQ-----ASLKLYADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 1.0
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 12/40 (30%)
Query: 100 EAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETE 139
+A+K LQ + L Y DD A L I A E
Sbjct: 20 QALKKLQASLKL-------YADDSAPALAIK-----ATME 47
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 31.1 bits (70), Expect = 0.34
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 17/89 (19%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE---- 76
G+R + + Y+ A Y S F A + L +Y D RKA
Sbjct: 151 GDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202
Query: 77 ---LEPSLVKAQFFLGQ--ALHEINHYDE 100
+ +F L Q LH + H DE
Sbjct: 203 KEVCFACVDGKEFRLAQMCGLHIVVHADE 231
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 31.1 bits (69), Expect = 0.35
Identities = 15/117 (12%), Positives = 35/117 (29%), Gaps = 12/117 (10%)
Query: 55 ALCYLKLKQYVHCCDDCRKALEL--------EPSLVKAQFFLGQALHEINHYDEAVKHLQ 106
+ L+ Y R+ ++ L A G H + +
Sbjct: 358 SEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMIC 417
Query: 107 RAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNRLITEDAEK 163
+AY + + +G + + R E R+ ++ E + + R + +
Sbjct: 418 KAYAILL---VTHGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 30.5 bits (69), Expect = 0.39
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 69 DDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIA 124
++ + P L LH++ +EA++ L +L D
Sbjct: 206 QQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHL----RXDLTAADGQT 257
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 31.0 bits (70), Expect = 0.45
Identities = 22/192 (11%), Positives = 51/192 (26%), Gaps = 12/192 (6%)
Query: 45 PVIPSYFTNRALCYLK------LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHY 98
+ + T + L+ + Q+ + + FL + N +
Sbjct: 439 DLQVDFLTEKNRSQLQDLHRKMVTQFQRYYQP-HTLSPDQEDCMYWYNFLAYHMASANMH 497
Query: 99 DEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYLNR-LI 157
E + + + + + ++ + + + LN L+
Sbjct: 498 KELCALMFSLDWI--KAKTELVGPAHLIHEFVAYRHILDEKDCAVCENFQEFLSLNGHLL 555
Query: 158 TEDAEKELGSIR-RDAETKRLDGDAVQEAVMRIEARRDRSMAELNDLFVAIDERRRKVGH 216
+ + + ET + A +A + R +N + R H
Sbjct: 556 GRQPFPNIVQLGLCEPETSEVYRQAKLQAKQEGDTGRLYLEW-INKKTIKNLSRLVVRPH 614
Query: 217 FDPVTRVKLSAD 228
D V S D
Sbjct: 615 TDAVYHACFSQD 626
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles,
endocytosis, SELF- assembly, alpha-alpha superhelix;
2.60A {Bos taurus} SCOP: a.118.1.3
Length = 449
Score = 30.2 bits (68), Expect = 0.56
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 17/89 (19%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALE---- 76
G+R + + Y+ A Y S F A + L +Y D RKA
Sbjct: 129 GDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTW 180
Query: 77 ---LEPSLVKAQFFLGQ--ALHEINHYDE 100
+ +F L Q LH + H DE
Sbjct: 181 KEVCFACVDGKEFRLAQMCGLHIVVHADE 209
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 30.1 bits (67), Expect = 0.63
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 28 RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVK--AQ 85
Y +A+ A + + +A+ Y +++ D + A + + A
Sbjct: 116 GNYADAMEALEAAPVAGSEHLVAWM-KAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAG 174
Query: 86 FFLGQALHEINHYDEAVKHLQRAYDLSREQ 115
G A + + EA + L A D +
Sbjct: 175 VAHGVAAANLALFTEAERRLTEANDSPAGE 204
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo
sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Length = 376
Score = 30.1 bits (67), Expect = 0.67
Identities = 20/140 (14%), Positives = 37/140 (26%), Gaps = 27/140 (19%)
Query: 28 RQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELEPSLVKAQFF 87
E N Y +A + ++ + YL LK + A +
Sbjct: 213 ALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTA--------------YAYCY 258
Query: 88 LGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEI 147
G+ L + EA++ LQ A L + + +
Sbjct: 259 HGETLLASDKCGEAIRSLQEAEKLYAK----------AEALCKEYGETKGPGPTVKPSGH 308
Query: 148 ELLTYLNRLITED---AEKE 164
L L+ ++E
Sbjct: 309 LFFRKLGNLVKNTLEKCQRE 328
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 30.3 bits (69), Expect = 0.70
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 21/87 (24%)
Query: 68 CDDCRKALELEPSLVKAQFFLGQALHEINH------YDEAVKHLQRAYDLSREQNLNYGD 121
C + + ++ + L Y +A+K+ L++++ YG+
Sbjct: 269 CTVIDNVMAVHGDKIR---KMNPHLKLPTRPFKRMTYADAIKYCNDHGILNKDKPFEYGE 325
Query: 122 DIACQLRIAKKKRWAETEEKRIAQEIE 148
DI +E E+++ EI
Sbjct: 326 DI------------SEKPERQMTDEIG 340
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt
pseudomonas, protein binding; 2.50A {Pseudomonas
fluorescens}
Length = 452
Score = 30.1 bits (68), Expect = 0.78
Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 13/98 (13%)
Query: 21 GNRYF---GLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALEL 77
Y Q E + + + V ++ + L D + A L
Sbjct: 183 ATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQR--VDSVARV-LGDATLGTPDEKTAQAL 239
Query: 78 ----EPSLVKAQFFLGQALHEINH---YDEAVKHLQRA 108
P + L Q L++ ++ +K+L
Sbjct: 240 LEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNG 277
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 29.8 bits (66), Expect = 0.80
Identities = 12/105 (11%), Positives = 31/105 (29%), Gaps = 12/105 (11%)
Query: 27 LRQYEEAINCYTRAI-IKNPVIPSYFTNRALCYLKLKQYVHCCDDCRKALELE------- 78
L E + + N + L ++ + +K ++
Sbjct: 318 LEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY 377
Query: 79 -PSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDD 122
++ LG+ + + K L++A + + +G D
Sbjct: 378 SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME---VAHGKD 419
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 27.4 bits (61), Expect = 1.8
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 219 PVTRVKLSADQLIPNFAMKEVVDNFLQ 245
P V ++ L N + E+V +
Sbjct: 61 PTCCVTVTEPDLKNNRILDELVKSLNF 87
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase;
HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava}
SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Length = 803
Score = 28.9 bits (65), Expect = 2.0
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 9/47 (19%)
Query: 60 KLKQYVHCCDDCRKALELEPSLVKAQFF------LGQALHEINHYDE 100
K++++ DDC + P +++ Q A+ + +D
Sbjct: 670 KVRRFY-ALDDCGTRIN--PMIIEGQIHGGLTEGYAVAMGQQMPFDA 713
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum,
molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A
{Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1
PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Length = 809
Score = 28.7 bits (65), Expect = 2.1
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 9/47 (19%)
Query: 60 KLKQYVHCCDDCRKALELEPSLVKAQFF------LGQALHEINHYDE 100
K +++ DDC + P +++ Q A+ + YDE
Sbjct: 676 KTRRFY-ALDDCGTRIN--PMIIEGQVHGGLTEAFAVAMGQEIRYDE 719
>2dxq_A AGR_C_4057P, acetyltransferase; structural genomics, PSI-2, protein
struc initiative, midwest center for structural
genomics, MCSG; 1.80A {Agrobacterium tumefaciens str}
Length = 150
Score = 27.8 bits (62), Expect = 2.1
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 11/80 (13%)
Query: 147 IELLTYLNR----LITEDAEKELGSIRRDAETK----RLDGDAVQEAVMRIE---ARRDR 195
+EL LN L T++A ++ +G V A + I R R
Sbjct: 20 LELYQVLNPSDPELTTQEAGAVFAAMLAQPGLTIFVATENGKPVATATLLIVPNLTRAAR 79
Query: 196 SMAELNDLFVAIDERRRKVG 215
A + ++ R R G
Sbjct: 80 PYAFIENVVTLEARRGRGYG 99
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 28.7 bits (63), Expect = 2.2
Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 11/76 (14%)
Query: 55 ALCYLKLKQYVHCCDDCRKAL--------ELEPSLVKAQFFLGQALHEINHYDEAVKHLQ 106
+ L + + P +G+ + +A+K+L+
Sbjct: 336 MDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLR 395
Query: 107 RAYDLSREQNLNYGDD 122
A+D+ R + +G +
Sbjct: 396 LAFDIMR---VTHGRE 408
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD;
HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1
d.133.1.1
Length = 788
Score = 28.7 bits (65), Expect = 2.3
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 9/47 (19%)
Query: 60 KLKQYVHCCDDCRKALELEPSLVKAQFF------LGQALHEINHYDE 100
++ + +DC + P +V+ Q +GQ L E YD+
Sbjct: 656 RVTDFF-AVEDCGTMIN--PMIVEGQIRGGIAQAIGQTLLEEVIYDD 699
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 28.4 bits (62), Expect = 2.4
Identities = 16/111 (14%), Positives = 36/111 (32%)
Query: 1 MSKSHNFTTNNLSDKELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRALCYLK 60
+ K + + + + L G+ Q +A + Y A P + A+
Sbjct: 139 IVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS 198
Query: 61 LKQYVHCCDDCRKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDL 111
++ +++ ++ A L +AL + + VK D
Sbjct: 199 KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDF 249
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 27.6 bits (61), Expect = 2.6
Identities = 12/111 (10%), Positives = 33/111 (29%), Gaps = 9/111 (8%)
Query: 72 RKALELEPSLVKAQFFLGQALHEINHYDEAVKHLQRAYDLSREQNLNYGDDIACQLRIAK 131
+ + S + L E ++ A + L ++ + + A
Sbjct: 30 QTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAA 89
Query: 132 KKRWAETEEKRIAQEIE--------LLTYLNRLITEDAEKEL-GSIRRDAE 173
+ + E+ +A + + Y E+A + L ++ +
Sbjct: 90 ESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain,
hydrolase; 1.95A {Homo sapiens}
Length = 363
Score = 28.2 bits (62), Expect = 2.6
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 84 AQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
A +G+ E + E V + Q A D E
Sbjct: 254 AHLHMGKQAEEQQKFGERVAYFQSALDKLNE 284
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 85
Score = 26.6 bits (58), Expect = 3.1
Identities = 10/49 (20%), Positives = 25/49 (51%)
Query: 105 LQRAYDLSREQNLNYGDDIACQLRIAKKKRWAETEEKRIAQEIELLTYL 153
+ AY+ S+ + + + +D+ C ++I K +W + R+ + + L
Sbjct: 8 MIAAYENSKWEPVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLL 56
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 26.4 bits (58), Expect = 3.7
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 219 PVTRVKLSADQLIPNFAMKEVVDNF 243
P R L +L+ +EV
Sbjct: 62 PHCRAPLQLRELVNCRWAEEVTQQL 86
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein
transport; 1.95A {Saccharomyces cerevisiae}
Length = 392
Score = 27.8 bits (61), Expect = 3.7
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 84 AQFFLGQALHEINHYDEAVKHLQRAYDLSRE 114
+ ++ G L E N EA+ L +
Sbjct: 259 SAYYHGLHLEEENRVGEAIAFLDFSMQQLIS 289
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 27.5 bits (60), Expect = 4.8
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 126 QLRIAKKKRWAETEEKRIAQEIEL----LTYLNRLITEDAEKELGSIRRDAETKRLDGDA 181
AK + + E RI E + L I +AE E R+ E
Sbjct: 718 STGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQL 777
Query: 182 VQE-----AVMRIEARRDRSMAE 199
E + +EA++ + M E
Sbjct: 778 ELEVSKAQQLANVEAKKFKEMTE 800
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 26.1 bits (57), Expect = 5.4
Identities = 5/33 (15%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 219 PVT---RVKLSADQLIPNFAMKEVVDNFLQEND 248
P + LI + A++ ++N ++
Sbjct: 52 PQIGCSHTDIRKSDLIQDEALRRAIENHNKKRH 84
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat,
cysteine rich protein, loop-helix-TU repeat protein,
hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Length = 273
Score = 26.8 bits (60), Expect = 7.7
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 82 VKAQFFLGQALHEINHYDEAVKHLQRA 108
K LG ++ + +A K+ ++A
Sbjct: 6 PKELVGLGAKSYKEKDFTQAKKYFEKA 32
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase
family, dimer heterotrimers, oxidoreductase; HET: PCD
FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1
d.133.1.1 PDB: 1sb3_A*
Length = 769
Score = 26.8 bits (60), Expect = 8.1
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 9/47 (19%)
Query: 60 KLKQYVHCCDDCRKALELEPSLVKAQFF------LGQALHEINHYDE 100
+ D KAL P V+ Q +GQAL E YD
Sbjct: 640 TAHKVW-VAVDVGKALN--PLAVEGQTQGGVWMGMGQALSEETVYDN 683
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 25.8 bits (57), Expect = 8.4
Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 3/46 (6%)
Query: 21 GNRYFGLRQYEEAINCYTRAIIKNP---VIPSYFTNRALCYLKLKQ 63
G Y+ R ++ A + + + P L +
Sbjct: 46 GESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGK 91
Score = 25.8 bits (57), Expect = 9.9
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 10/101 (9%)
Query: 15 KELKDEGNRYFGLRQYEEAINCYTRAIIKNPVIPSYFTNRAL-----CYLKLKQYVHCCD 69
+ + +Y++A + + P +T AL Y + +
Sbjct: 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYP--NGVYTPNALYWLGESYYATRNFQLAEA 60
Query: 70 DCRKALELEPSLVK---AQFFLGQALHEINHYDEAVKHLQR 107
R + P+ K LG + + EA + LQ+
Sbjct: 61 QFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQ 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.392
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,023,428
Number of extensions: 251370
Number of successful extensions: 1585
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1182
Number of HSP's successfully gapped: 402
Length of query: 253
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 162
Effective length of database: 4,160,982
Effective search space: 674079084
Effective search space used: 674079084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)