BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11462
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
Query: 37 HTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKE 96
H + VSLEE+Y GC K + + + ++P +I N KI+ I++K G E T F KE
Sbjct: 16 HDLRVSLEEIYSGCTKKMKISHKRLNPDG--KSIRNEDKILTIEVKKGWKEGTKITFPKE 73
Query: 97 PLEYSTS--SEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHI 154
+ S + ++++ + KDKPH++F R+G+D+ +SL+EAL G + V TLD R + +
Sbjct: 74 GDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPV 133
Query: 155 PITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLL 210
D+ KV EG+P + P RGDL I + +P+ + R L +L
Sbjct: 134 VFKDVIRPGMRRKV-PGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 188
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
Query: 37 HTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKE 96
H + VSLEE+Y GC K + + + ++P +I N KI+ I++K G E T F KE
Sbjct: 9 HDLRVSLEEIYSGCTKKMKISHKRLNPDG--KSIRNEDKILTIEVKKGWKEGTKITFPKE 66
Query: 97 PLEYSTS--SEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHI 154
+ S + ++++ + KDKPH++F R+G+D+ +SL+EAL G + V TLD R + +
Sbjct: 67 GDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPV 126
Query: 155 PITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLL 210
D+ KV EG+P + P RGDL I + +P+ + R L +L
Sbjct: 127 VFKDVIRPGMRRKV-PGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 181
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
Query: 37 HTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKE 96
H + VSLEE+Y GC K + + + ++P +I N KI+ I++K G E T F KE
Sbjct: 7 HDLRVSLEEIYSGCTKKMKISHKRLNPDG--KSIRNEDKILTIEVKKGWKEGTKITFPKE 64
Query: 97 PLEYSTS--SEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHI 154
+ S + ++++ + KDKPH++F R+G+D+ +SL+EAL G + V TLD R + +
Sbjct: 65 GDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPV 124
Query: 155 PITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLL 210
D+ KV EG+P + P RGDL I + +P+ + R L +L
Sbjct: 125 VFKDVIRPGMRRKV-PGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 179
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 39 VVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKEPL 98
++V+LEELY G K + V + ++ + N IV ++IKPG + T +S E
Sbjct: 10 LLVTLEELYLGKRKKIKVTRKRF----IEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGD 65
Query: 99 EYS---TSSEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIP 155
+ S + ++++I + K H F R+ L K + L ALTGF+ VTTLD+R L IP
Sbjct: 66 QESPGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIPLVRALTGFTCPVTTLDNRNLQIP 125
Query: 156 ITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLD 211
I ++ ++ K++ +EG P +P +GDL + I +PK L+P+ +K + LD
Sbjct: 126 IKEIVN-PKTRKIVPNEGXPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEALD 180
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 41 VSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKEPLEY 100
VSLE+L+ G K + + S + I I++KPG T + K +Y
Sbjct: 9 VSLEDLFVGKKKSFKIGRKGPHGASEKTQI-------DIQLKPGWKAGTKITY-KNQGDY 60
Query: 101 STSS----EVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPI 156
+ + + + ++K H F R+G DL +S KE+L GFS T+ T+D R L P+
Sbjct: 61 NPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTL--PL 118
Query: 157 TDLTTCNQSM-KVIKSEGMPHVEEPHLRGDLFIHLSIDYP 195
+ + S +GMP + P RG+L + +DYP
Sbjct: 119 SRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYP 158
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 41 VSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKEPLEY 100
VSLE+L+ G K + + S + I I++KPG T + K +Y
Sbjct: 9 VSLEDLFVGKKKSFKIGRKGPHGASEKTQI-------DIQLKPGWKAGTKITY-KNQGDY 60
Query: 101 STSS----EVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPI 156
+ + + + ++K H F R+G DL +S KE+L GFS T+ T+D R L P+
Sbjct: 61 NPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTL--PL 118
Query: 157 TDLTTCNQSM-KVIKSEGMPHVEEPHLRGDLFIHLSIDYP 195
+ + S +GMP + P RG+L + +DYP
Sbjct: 119 SRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYP 158
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Query: 72 NTSKIVHIKIKPGL--PEHTVFKFSKEPLEYSTSSEVIVITKDKPHDVFWREGADLHMKK 129
N KI+ + ++PG+ + VFK + +V+ I ++PH F R+G DL +
Sbjct: 109 NERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEA 168
Query: 130 NVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSM-KVIKSEGMPHVEEPHLRGDLFI 188
+ L A+ G F + + L + I M KVI+ +GMP + + G+L I
Sbjct: 169 EIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMP-IPKYGGYGNLII 227
Query: 189 HLSIDYPK 196
+I P+
Sbjct: 228 KFTIKDPE 235
>pdb|2HQ2|A Chain A, Structure Of The Escherichia Coli O157:h7 Heme Oxygenase
Chus In Complex With Heme
Length = 354
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 48 RGCVKLLTVPVQEIDPCSVQLNIINTSKIVHI 79
RGCV++ T V+++ P LNI N + +H+
Sbjct: 259 RGCVQIFTGVVEKVVPMKGWLNIFNPTFTLHL 290
>pdb|1U9T|A Chain A, Crystal Structure Analysis Of Chus, An E. Coli Heme
Oxygenase
Length = 354
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 48 RGCVKLLTVPVQEIDPCSVQLNIINTSKIVHI 79
RGCV++ T V+++ P LNI N + +H+
Sbjct: 259 RGCVQIFTGVVEKVVPMKGWLNIFNPTFTLHL 290
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,675,704
Number of Sequences: 62578
Number of extensions: 270492
Number of successful extensions: 804
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 14
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)