Query psy11462
Match_columns 237
No_of_seqs 150 out of 1437
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 19:04:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11462.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11462hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q2g_A HSP40 protein, heat sho 100.0 1.7E-47 5.9E-52 315.0 25.9 176 31-211 2-180 (180)
2 3agx_A DNAJ homolog subfamily 100.0 4.5E-47 1.6E-51 312.7 25.4 176 32-211 2-180 (181)
3 3lz8_A Putative chaperone DNAJ 100.0 8.4E-47 2.9E-51 337.0 24.0 198 9-213 115-318 (329)
4 1c3g_A Heat shock protein 40; 100.0 6.9E-45 2.3E-49 296.9 19.8 167 33-207 1-170 (170)
5 1nlt_A Protein YDJ1, mitochond 100.0 4.8E-44 1.6E-48 308.1 22.5 179 28-207 7-248 (248)
6 3i38_A Putative chaperone DNAJ 99.9 2.3E-27 7.9E-32 179.7 11.7 96 113-213 2-97 (109)
7 1xao_A YDJ1, mitochondrial pro 99.9 2.6E-25 8.9E-30 171.4 12.8 96 117-214 1-100 (121)
8 3i38_A Putative chaperone DNAJ 99.4 4.2E-13 1.4E-17 101.1 6.4 79 26-120 5-84 (109)
9 1xao_A YDJ1, mitochondrial pro 99.3 3.4E-12 1.1E-16 97.9 6.6 74 29-117 3-81 (121)
10 2q2g_A HSP40 protein, heat sho 99.2 1.7E-11 6E-16 100.1 6.3 95 8-119 70-168 (180)
11 1c3g_A Heat shock protein 40; 99.2 1.1E-11 3.8E-16 100.4 4.5 95 8-119 64-162 (170)
12 3agx_A DNAJ homolog subfamily 99.1 1.1E-10 3.8E-15 95.4 7.2 80 25-119 85-168 (181)
13 1nlt_A Protein YDJ1, mitochond 99.1 6.6E-11 2.3E-15 101.3 6.1 91 10-117 141-236 (248)
14 3lz8_A Putative chaperone DNAJ 99.1 1.6E-10 5.3E-15 102.8 6.2 91 11-119 212-303 (329)
15 2ctt_A DNAJ homolog subfamily 95.7 0.00031 1.1E-08 51.7 -4.0 31 32-62 1-31 (104)
16 2da1_A Alpha-fetoprotein enhan 56.5 9 0.00031 25.0 3.0 38 197-234 13-57 (70)
17 1yz8_P Pituitary homeobox 2; D 55.0 12 0.0004 24.3 3.4 38 197-234 9-53 (68)
18 2dn0_A Zinc fingers and homeob 51.2 10 0.00035 25.3 2.6 39 196-234 13-58 (76)
19 1ahd_P Antennapedia protein mu 50.7 13 0.00043 24.2 3.0 38 197-234 8-52 (68)
20 1jgg_A Segmentation protein EV 49.9 8.5 0.00029 24.3 2.0 38 197-234 7-51 (60)
21 3a03_A T-cell leukemia homeobo 49.8 7.4 0.00025 24.3 1.6 38 197-234 3-47 (56)
22 2dmu_A Homeobox protein goosec 48.1 9 0.00031 25.0 1.9 38 197-234 13-57 (70)
23 2vi6_A Homeobox protein nanog; 48.0 9.5 0.00032 24.2 2.0 38 197-234 9-53 (62)
24 1akh_A Protein (mating-type pr 48.0 8.1 0.00028 24.4 1.6 38 197-234 11-55 (61)
25 2k40_A Homeobox expressed in E 47.6 11 0.00039 24.3 2.3 38 197-234 7-51 (67)
26 1bw5_A ISL-1HD, insulin gene e 46.9 9.8 0.00033 24.5 1.9 38 197-234 9-53 (66)
27 3a02_A Homeobox protein arista 46.5 9.5 0.00032 24.1 1.8 38 197-234 5-49 (60)
28 2da6_A Hepatocyte nuclear fact 46.3 11 0.00037 27.2 2.2 32 197-228 12-43 (102)
29 2e19_A Transcription factor 8; 46.1 13 0.00046 24.0 2.5 38 197-234 9-53 (64)
30 1k61_A Mating-type protein alp 45.8 11 0.00036 23.8 1.9 39 196-234 3-51 (60)
31 1ig7_A Homeotic protein MSX-1; 45.6 9.5 0.00032 23.8 1.7 38 197-234 6-50 (58)
32 2hdd_A Protein (engrailed home 45.3 11 0.00037 23.9 1.9 38 197-234 9-53 (61)
33 1zq3_P PRD-4, homeotic bicoid 44.7 13 0.00046 24.1 2.3 38 197-234 8-52 (68)
34 2da2_A Alpha-fetoprotein enhan 43.9 9.3 0.00032 24.9 1.5 38 197-234 13-57 (70)
35 2e1o_A Homeobox protein PRH; D 43.8 9.4 0.00032 25.0 1.5 38 197-234 13-57 (70)
36 2dmq_A LIM/homeobox protein LH 43.6 9.9 0.00034 25.5 1.6 38 197-234 13-57 (80)
37 2djn_A Homeobox protein DLX-5; 43.6 11 0.00037 24.6 1.8 38 197-234 13-57 (70)
38 2h1k_A IPF-1, pancreatic and d 43.2 12 0.00042 23.8 1.9 38 197-234 9-53 (63)
39 2cra_A Homeobox protein HOX-B1 42.5 11 0.00036 24.7 1.5 38 197-234 13-57 (70)
40 2dmt_A Homeobox protein BARH-l 41.7 13 0.00044 25.0 1.9 38 197-234 23-67 (80)
41 3rkq_A Homeobox protein NKX-2. 41.6 16 0.00056 22.5 2.3 38 197-234 8-52 (58)
42 2da5_A Zinc fingers and homeob 41.3 13 0.00045 24.7 1.9 38 197-234 13-57 (75)
43 4aw0_A HPDK1, 3-phosphoinositi 40.8 20 0.0007 30.6 3.5 48 190-237 249-299 (311)
44 2dms_A Homeobox protein OTX2; 40.7 11 0.00038 25.3 1.5 38 197-234 13-57 (80)
45 2cue_A Paired box protein PAX6 40.2 14 0.00049 24.8 2.0 38 197-234 13-57 (80)
46 1ftt_A TTF-1 HD, thyroid trans 39.7 14 0.00048 23.9 1.8 38 197-234 8-52 (68)
47 1puf_B PRE-B-cell leukemia tra 38.8 19 0.00065 23.6 2.4 38 197-234 7-54 (73)
48 1uhs_A HOP, homeodomain only p 38.5 18 0.00061 23.7 2.2 38 197-234 7-52 (72)
49 1b72_B Protein (PBX1); homeodo 38.1 19 0.00065 24.4 2.4 38 197-234 7-54 (87)
50 1du6_A PBX1, homeobox protein 37.7 13 0.00045 23.6 1.4 38 197-234 9-56 (64)
51 2ecc_A Homeobox and leucine zi 37.0 14 0.00047 25.1 1.5 38 197-234 9-53 (76)
52 2l7z_A Homeobox protein HOX-A1 36.9 17 0.00058 23.9 1.9 38 197-234 13-57 (73)
53 1nk2_P Homeobox protein VND; h 36.8 15 0.00052 24.4 1.7 38 197-234 15-59 (77)
54 2dmp_A Zinc fingers and homeob 36.7 17 0.00057 25.1 1.9 38 197-234 19-63 (89)
55 3k2a_A Homeobox protein MEIS2; 36.7 17 0.00057 23.7 1.8 38 197-234 4-51 (67)
56 3ubd_A Ribosomal protein S6 ki 36.1 28 0.00097 29.5 3.7 47 191-237 242-290 (304)
57 1fjl_A Paired protein; DNA-bin 35.9 18 0.00061 24.3 1.9 38 197-234 24-68 (81)
58 2da3_A Alpha-fetoprotein enhan 34.7 10 0.00034 25.4 0.5 38 197-234 23-67 (80)
59 1b72_A Protein (homeobox prote 34.2 23 0.00079 24.7 2.3 39 196-234 39-84 (97)
60 2da4_A Hypothetical protein DK 33.6 9.6 0.00033 25.6 0.2 38 197-234 14-62 (80)
61 1b8i_A Ultrabithorax, protein 33.1 21 0.00072 24.0 1.9 39 196-234 25-70 (81)
62 1mnm_C Protein (MAT alpha-2 tr 32.8 22 0.00074 24.2 2.0 38 197-234 33-80 (87)
63 1wh5_A ZF-HD homeobox family p 32.3 18 0.00061 24.5 1.4 38 197-234 23-71 (80)
64 1puf_A HOX-1.7, homeobox prote 31.7 23 0.00079 23.5 1.9 38 197-234 19-63 (77)
65 2hi3_A Homeodomain-only protei 31.5 23 0.0008 23.2 1.9 38 197-234 8-53 (73)
66 2r5y_A Homeotic protein sex co 31.5 24 0.00082 24.1 2.0 38 197-234 34-78 (88)
67 2kt0_A Nanog, homeobox protein 31.0 20 0.0007 24.1 1.6 38 197-234 28-72 (84)
68 2ly9_A Zinc fingers and homeob 30.0 26 0.00088 22.9 1.9 38 197-234 12-56 (74)
69 1x2n_A Homeobox protein pknox1 29.8 25 0.00086 22.9 1.8 38 197-234 13-60 (73)
70 3nau_A Zinc fingers and homeob 29.6 21 0.00073 23.5 1.4 38 197-234 10-54 (66)
71 3zxf_A Galectin-7; sugar bindi 28.3 68 0.0023 23.8 4.3 23 76-98 7-29 (138)
72 2l9r_A Homeobox protein NKX-3. 28.1 23 0.00078 23.3 1.4 38 197-234 10-54 (69)
73 3u0k_A Rcamp; fluorescent prot 27.6 96 0.0033 28.0 5.8 141 68-215 153-313 (440)
74 1msz_A DNA-binding protein smu 27.1 32 0.0011 23.9 2.0 22 191-212 35-56 (86)
75 3nv1_A Galectin-9, galectin 9 27.0 83 0.0028 23.3 4.5 23 77-99 10-32 (138)
76 3a01_A Homeodomain-containing 27.0 24 0.00081 24.5 1.3 38 197-234 23-67 (93)
77 2cuf_A FLJ21616 protein; homeo 26.7 29 0.00099 24.0 1.8 32 197-228 13-44 (95)
78 1le8_B Mating-type protein alp 26.3 29 0.00099 23.4 1.7 37 198-234 9-55 (83)
79 3zsj_A Galectin-3; sugar bindi 26.3 67 0.0023 23.8 3.9 23 77-99 6-28 (138)
80 2m0c_A Homeobox protein arista 25.6 33 0.0011 22.3 1.8 38 197-234 15-59 (75)
81 1wh7_A ZF-HD homeobox family p 23.8 53 0.0018 22.1 2.6 38 197-235 23-72 (80)
82 1lfb_A Liver transcription fac 23.2 44 0.0015 23.6 2.2 31 197-227 15-45 (99)
83 1n10_A PHL P I, pollen allerge 23.0 3.1E+02 0.011 22.4 8.3 102 48-168 127-239 (241)
84 2dmn_A Homeobox protein TGIF2L 22.9 56 0.0019 22.0 2.6 38 197-234 13-60 (83)
85 3i8t_A Galectin-4; S-type lect 22.7 2.2E+02 0.0076 21.7 6.4 22 76-97 30-51 (164)
86 2yro_A Galectin-8; GAL-BIND le 21.5 1.5E+02 0.005 22.5 5.1 40 76-115 18-67 (155)
87 3zxf_A Galectin-7; sugar bindi 21.3 1.5E+02 0.0051 21.8 5.0 43 153-196 9-59 (138)
88 3nar_A ZHX1, zinc fingers and 20.8 44 0.0015 23.1 1.8 38 197-234 31-75 (96)
89 3d1n_I POU domain, class 6, tr 20.0 47 0.0016 25.1 1.9 38 197-234 99-143 (151)
No 1
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.7e-47 Score=315.00 Aligned_cols=176 Identities=34% Similarity=0.573 Sum_probs=165.4
Q ss_pred CCCCEEEEEEeehHhHhcCeEEEEEeeeEEecCCCCceeEEEeeEEEEEEeCCCCCCCCEEEEccCCCC-CC--CCccEE
Q psy11462 31 SSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKEPLE-YS--TSSEVI 107 (237)
Q Consensus 31 ~g~di~~~l~lsL~ea~~G~~k~v~~~r~~~~g~G~~~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~-~~--~~GDl~ 107 (237)
+++|+.+.++|||+|||+|+++++.+.+.+.|++ |++.+.++++|.||||+++|++|+|+|+|++ .+ .+||||
T Consensus 2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~----g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~ 77 (180)
T 2q2g_A 2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH----KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLV 77 (180)
T ss_dssp --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT----EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEE
T ss_pred CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC----ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEE
Confidence 3789999999999999999999999999999975 5788899999999999999999999999998 44 789999
Q ss_pred EEEEecCCcceeeeCcceEEEEEecHHhHhcCCeEEEEcCCCcEEEEEeCCccccCCcEEEEcCCCCCCCCCCCCCccEE
Q psy11462 108 VITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLF 187 (237)
Q Consensus 108 v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~i~i~tldG~~l~i~ip~~~~~~g~~~~i~g~G~p~~~~~~~rGDl~ 187 (237)
|+|++++|+.|+|+|+||+++++|++++|++|++++|+|+||+.+.|++|++ +++|++++|+|+|||..++++.+||||
T Consensus 78 v~i~~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~v~i~ip~~-t~~g~~~rl~g~Gmp~~~~~~~~GDL~ 156 (180)
T 2q2g_A 78 LIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEI-VNPKTRKIVPNEGMPIKNQPGQKGDLI 156 (180)
T ss_dssp EEEEECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECTTCCEEEEEECSC-CCTTCEEEETTCSCBCSSSTTCBCCEE
T ss_pred EEEEEEecccEEEcCCEEEEEEEcCHHHHhCCCEEEeeCCCCCEEEEECCCc-cCCCEEEEECCcCCCcCCCCCCcCCEE
Confidence 9999999999999999999999999999999999999999998899999999 999999999999999876556899999
Q ss_pred EEEEEECCCCCCHHHHHHHHHhhc
Q psy11462 188 IHLSIDYPKFLSPDLRKTLSTLLD 211 (237)
Q Consensus 188 V~~~V~~P~~l~~~~~~ll~~~~~ 211 (237)
|+|+|.+|++|+++|+++|+++++
T Consensus 157 V~~~V~~P~~Ls~~q~~~l~~~~p 180 (180)
T 2q2g_A 157 LEFDICFPKSLTPEQKKLIKEALD 180 (180)
T ss_dssp EEEEEECCSCCCHHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHHhcC
Confidence 999999999999999999999873
No 2
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=100.00 E-value=4.5e-47 Score=312.70 Aligned_cols=176 Identities=32% Similarity=0.560 Sum_probs=162.6
Q ss_pred CCCEEEEEEeehHhHhcCeEEEEEeeeEEe-cCCCCceeEEEeeEEEEEEeCCCCCCCCEEEEccCCCCCC--CCccEEE
Q psy11462 32 SNQQVHTVVVSLEELYRGCVKLLTVPVQEI-DPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKEPLEYS--TSSEVIV 108 (237)
Q Consensus 32 g~di~~~l~lsL~ea~~G~~k~v~~~r~~~-~g~G~~~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~--~~GDl~v 108 (237)
++|+.+.++|||+|||+|+++++.+.+.+. | .| +|++.+.++++|.||||+++|++|+|+|+|++.+ .+|||||
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~~c~~c-~G--~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~g~~GDl~v 78 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISHKRLNP-DG--KSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVF 78 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEEEEECT-TS--SCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSSSCCCCEEE
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEecccCCC-CC--ceEEEEeEEEEEEECCCccCCcEEEEeeccccCCCCCcccEEE
Confidence 578999999999999999999999998876 5 34 3688899999999999999999999999999987 7899999
Q ss_pred EEEecCCcceeeeCcceEEEEEecHHhHhcCCeEEEEcCCCcEEEEEeCCccccCCcEEEEcCCCCCCCCCCCCCccEEE
Q psy11462 109 ITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFI 188 (237)
Q Consensus 109 ~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~i~i~tldG~~l~i~ip~~~~~~g~~~~i~g~G~p~~~~~~~rGDl~V 188 (237)
+|++++|+.|+|+|+||+++++|++++|++|++++|+|+||+.+.|++|++ +++|++++|+|+|||..++++.+|||||
T Consensus 79 ~i~~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~i~~~-t~~g~~~rl~g~Gmp~~~~~~~~GDL~V 157 (181)
T 3agx_A 79 VLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDV-IRPGMRRKVPGEGLPLPKTPEKRGDLII 157 (181)
T ss_dssp EEEECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECSC-CCTTCEEEETTCSCBCSSSTTSBCCEEE
T ss_pred EEEEeccccceeeCCcEEEEEEcCHHHHhCCCEEEeECCCCCEEEEECCCc-cCCCcEEEECCcCCCcCCCCCCcCCEEE
Confidence 999999999999999999999999999999999999999998899999999 9999999999999998765567999999
Q ss_pred EEEEECCCCCCHHHHHHHHHhhc
Q psy11462 189 HLSIDYPKFLSPDLRKTLSTLLD 211 (237)
Q Consensus 189 ~~~V~~P~~l~~~~~~ll~~~~~ 211 (237)
+|+|.+|++|+++|+++|+++++
T Consensus 158 ~~~V~~P~~ls~~q~~~l~~~~~ 180 (181)
T 3agx_A 158 EFEVIFPERIPQTSRTVLEQVLP 180 (181)
T ss_dssp EEEEECCSCCCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 99999999999999999999985
No 3
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=8.4e-47 Score=336.96 Aligned_cols=198 Identities=18% Similarity=0.220 Sum_probs=165.3
Q ss_pred CChhhHhhhhhcCCCCC--CCCCCCCCCEEEEEEeehHhHhcCeEEEEEeeeEEecCCCCceeEEEeeEEEEEEeCCCCC
Q psy11462 9 MRKRAILRNLQGEKGSK--QDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLP 86 (237)
Q Consensus 9 ~~~~d~f~~~fg~~g~~--~~~~~~g~di~~~l~lsL~ea~~G~~k~v~~~r~~~~g~G~~~g~v~~~~~l~V~Ip~G~~ 86 (237)
.+++|||++|||+++.. ++.+++|.|+.+.|.|||+|+|+|+++.+.+.+.+.|+.|. ..+...++++|.||||++
T Consensus 115 ~~f~diF~~~Fg~~g~~~~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~--v~~~~~~~l~V~IP~Gv~ 192 (329)
T 3lz8_A 115 QDFDDIFSSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGM--IESETPKTLNVKIPAGVV 192 (329)
T ss_dssp ----------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC---CCEEEEEEEEEEECTTCC
T ss_pred CchhhhhHhhhcCcCCCCCCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeE--EEEecceEEEEeCCCCCC
Confidence 36789999999874321 23456899999999999999999999999999999888772 334446789999999999
Q ss_pred CCCEEEEccCCCCCC---CCccEEEEEEecCCcceeeeCcceEEEEEecHHhHhcCCeEEEEcCCCcEEEEEeCCccccC
Q psy11462 87 EHTVFKFSKEPLEYS---TSSEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCN 163 (237)
Q Consensus 87 ~G~~i~~~g~G~~~~---~~GDl~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~i~i~tldG~~l~i~ip~~~~~~ 163 (237)
+|++|+|+|+|++.+ .+|||||+|++++|+.|+|+|+||+++++|++++|++|++++|+||||+ +.|+||++ +++
T Consensus 193 ~G~~Irl~G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~-v~l~ip~g-t~~ 270 (329)
T 3lz8_A 193 DGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPG-SQA 270 (329)
T ss_dssp TTCEEEESSCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTT-CCT
T ss_pred CCCEEEEcccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCC-EEEEECCC-CCC
Confidence 999999999999875 6899999999999999999999999999999999999999999999998 89999999 999
Q ss_pred CcEEEEcCCCCCCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHhhc-cC
Q psy11462 164 QSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLD-ED 213 (237)
Q Consensus 164 g~~~~i~g~G~p~~~~~~~rGDl~V~~~V~~P~~l~~~~~~ll~~~~~-~~ 213 (237)
|++++|+|+|||.. +.+|||||+|+|.+|++|+++|+++|+++.+ ..
T Consensus 271 g~~~rl~G~GmP~~---~~rGDL~v~~~V~~P~~l~~~q~~~l~~~~~~~~ 318 (329)
T 3lz8_A 271 GQRLRIKGKGLVSK---THTGDLFAVIKIVMPTKPDEKARELWQQLAAAEA 318 (329)
T ss_dssp TCEEEETTCSCBCS---SCBCCEEEEEEECCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCEEEEcCCCCCCC---CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence 99999999999975 4699999999999999999999999999998 44
No 4
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=100.00 E-value=6.9e-45 Score=296.93 Aligned_cols=167 Identities=26% Similarity=0.427 Sum_probs=154.6
Q ss_pred CCEEEEEEeehHhHhcCeEEEEEeeeEEecCCCCceeEEEeeEEEEEEeCCCCCCCCEEEEccCCCCCC---CCccEEEE
Q psy11462 33 NQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKEPLEYS---TSSEVIVI 109 (237)
Q Consensus 33 ~di~~~l~lsL~ea~~G~~k~v~~~r~~~~g~G~~~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~---~~GDl~v~ 109 (237)
+|+.+.++|||+|||+|+++++.+.+. ++.| .+ +.++++|.||||+++|++|+|+|+|++.. .+|||||+
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~--~~~G----~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~ 73 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRK--GPHG----AS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFV 73 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEE--ETTT----EE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEE
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEe--cCCC----cE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEE
Confidence 489999999999999999999999987 3344 44 78999999999999999999999999543 78999999
Q ss_pred EEecCCcceeeeCcceEEEEEecHHhHhcCCeEEEEcCCCcEEEEEeCCccccCCcEEEEcCCCCCCCCCCCCCccEEEE
Q psy11462 110 TKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIH 189 (237)
Q Consensus 110 i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~i~i~tldG~~l~i~ip~~~~~~g~~~~i~g~G~p~~~~~~~rGDl~V~ 189 (237)
|++++|+.|+|+|+||+++++|++++|++|++++|+|+||+.+.|++|++ +++|++++|+|+|||..++++.+|||||+
T Consensus 74 i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~~i~i~~~-t~~g~~~rl~g~G~p~~~~~~~~GDL~V~ 152 (170)
T 1c3g_A 74 IQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP-VQPSQTSTYPGQGMPTPKNPSQRGNLIVK 152 (170)
T ss_dssp EEECCCSSEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSC-CCTTCEEECTTCSCBCSSCTTSBCCEEEE
T ss_pred EEEccCCccEEeCCcEeEEEEcCHHHHhCCCeEEeeCCCCCEEEEECCCc-cCCCcEEEEeCCCCCcCCCCCCCCCEEEE
Confidence 99999999999999999999999999999999999999998899999999 99999999999999987665679999999
Q ss_pred EEEECCCCCCHHHHHHHH
Q psy11462 190 LSIDYPKFLSPDLRKTLS 207 (237)
Q Consensus 190 ~~V~~P~~l~~~~~~ll~ 207 (237)
|+|.+|++|+++|+++|+
T Consensus 153 ~~V~~P~~Ls~~q~~~l~ 170 (170)
T 1c3g_A 153 YKVDYPISLNDAQKRAID 170 (170)
T ss_dssp ECCBCCSSCCTTHHHHTC
T ss_pred EEEECCCCCCHHHHHhhC
Confidence 999999999999998863
No 5
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=100.00 E-value=4.8e-44 Score=308.09 Aligned_cols=179 Identities=26% Similarity=0.377 Sum_probs=152.7
Q ss_pred CCCCCCCEEEEEEeehHhHhcCeEEEEEeeeEEec----CCCCc------------------------------------
Q psy11462 28 ITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEID----PCSVQ------------------------------------ 67 (237)
Q Consensus 28 ~~~~g~di~~~l~lsL~ea~~G~~k~v~~~r~~~~----g~G~~------------------------------------ 67 (237)
.+++|+|+.+.|.|||+|||+|+++++.+.+.+.| |+|+.
T Consensus 7 ~~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C 86 (248)
T 1nlt_A 7 GPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVC 86 (248)
T ss_dssp -CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTC
T ss_pred CCCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCC
Confidence 45689999999999999999999999999998885 33310
Q ss_pred ------------------eeEEEeeEEEEEEeCCCCCCCCEEEEccCCCCCC--CCccEEEEEEecCCcceeeeCcceEE
Q psy11462 68 ------------------LNIINTSKIVHIKIKPGLPEHTVFKFSKEPLEYS--TSSEVIVITKDKPHDVFWREGADLHM 127 (237)
Q Consensus 68 ------------------~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~--~~GDl~v~i~v~~~~~f~r~g~dL~~ 127 (237)
.|++.+.++++|.||||+++|++|+|+|+|++.+ .+|||||+|++++|+.|+|+|+||++
T Consensus 87 ~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~ 166 (248)
T 1nlt_A 87 HGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVY 166 (248)
T ss_dssp SSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEE
T ss_pred CCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEE
Confidence 3567788999999999999999999999999887 78999999999999999999999999
Q ss_pred EEEecHHhHhcCCeEEEEcCCCcEEEEEeCCc-cccCCcEEEEcCCCCCCCCCCCCCccEEEEEEEECCCC--CCHHHHH
Q psy11462 128 KKNVSLKEALTGFSFTVTTLDDRILHIPITDL-TTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKF--LSPDLRK 204 (237)
Q Consensus 128 ~~~I~l~~al~G~~i~i~tldG~~l~i~ip~~-~~~~g~~~~i~g~G~p~~~~~~~rGDl~V~~~V~~P~~--l~~~~~~ 204 (237)
+++|+|++|++|++++|+||||+.+.|+||++ .+++|++++|+|+|||..+++ .+|||||+|+|.+|++ |+++|++
T Consensus 167 ~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~-~~GDL~V~~~V~~P~~~~Ls~~q~~ 245 (248)
T 1nlt_A 167 EAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHFTSEENLK 245 (248)
T ss_dssp EEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSC-SBCCEEEEEEEECCC----------
T ss_pred EEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCC-CcCCEEEEEEEECCCCCCCCHHHHH
Confidence 99999999999999999999998899999842 289999999999999987654 7899999999999999 9999998
Q ss_pred HHH
Q psy11462 205 TLS 207 (237)
Q Consensus 205 ll~ 207 (237)
+|+
T Consensus 246 ~l~ 248 (248)
T 1nlt_A 246 KLE 248 (248)
T ss_dssp ---
T ss_pred hhC
Confidence 874
No 6
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.95 E-value=2.3e-27 Score=179.70 Aligned_cols=96 Identities=23% Similarity=0.278 Sum_probs=90.3
Q ss_pred cCCcceeeeCcceEEEEEecHHhHhcCCeEEEEcCCCcEEEEEeCCccccCCcEEEEcCCCCCCCCCCCCCccEEEEEEE
Q psy11462 113 KPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSI 192 (237)
Q Consensus 113 ~~~~~f~r~g~dL~~~~~I~l~~al~G~~i~i~tldG~~l~i~ip~~~~~~g~~~~i~g~G~p~~~~~~~rGDl~V~~~V 192 (237)
++|+.|+|+|+||+++++|++.+|++|++++|+|+||. +.|+||++ +++|++++|+|+|||. . +.+|||||+|+|
T Consensus 2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~-~~v~ip~g-~~~G~~~rl~G~G~p~-~--~~~GDL~v~~~V 76 (109)
T 3i38_A 2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPG-SQAGQRLRIKGKGLVS-K--THTGDLFAVIKI 76 (109)
T ss_dssp --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTT-CCTTCEEEETTCSCBC-S--SCBCCEEEEEEE
T ss_pred CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEeeCCC-cCcCeEEEECCccCCC-C--CCCcCEEEEEEE
Confidence 58999999999999999999999999999999999996 99999999 9999999999999997 3 379999999999
Q ss_pred ECCCCCCHHHHHHHHHhhccC
Q psy11462 193 DYPKFLSPDLRKTLSTLLDED 213 (237)
Q Consensus 193 ~~P~~l~~~~~~ll~~~~~~~ 213 (237)
.+|++|+++|+++|+++++..
T Consensus 77 ~~P~~Ls~~q~~~l~~l~~~~ 97 (109)
T 3i38_A 77 VMPTKPDEKARELWQQLAAAE 97 (109)
T ss_dssp CCCSSCCHHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999874
No 7
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.6e-25 Score=171.44 Aligned_cols=96 Identities=27% Similarity=0.407 Sum_probs=85.6
Q ss_pred ceeeeCcceEEEEEecHHhHhcCCeEEEEcCCCcEEEEEeCC--ccccCCcEEEEcCCCCCCCCCCCCCccEEEEEEEEC
Q psy11462 117 VFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITD--LTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDY 194 (237)
Q Consensus 117 ~f~r~g~dL~~~~~I~l~~al~G~~i~i~tldG~~l~i~ip~--~~~~~g~~~~i~g~G~p~~~~~~~rGDl~V~~~V~~ 194 (237)
.|+|+|+||+++++|++++|++|++++|+|+||+.+.|+||+ + +++|++++|+|+|||..+++ .+|||||+|+|.+
T Consensus 1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v-~~~G~~~rl~G~Gmp~~~~~-~~GDL~V~~~V~~ 78 (121)
T 1xao_A 1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEV-IAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKF 78 (121)
T ss_dssp CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSC-CCTTCEEEETTCSCC-------CCCEEEEEEEEC
T ss_pred CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCe-eCCCcEEEECCCCCCCCCCC-CCCCEEEEEEEEC
Confidence 489999999999999999999999999999999889999984 5 89999999999999987654 7899999999999
Q ss_pred CCC--CCHHHHHHHHHhhccCC
Q psy11462 195 PKF--LSPDLRKTLSTLLDEDK 214 (237)
Q Consensus 195 P~~--l~~~~~~ll~~~~~~~~ 214 (237)
|++ |+++|+++|+++++...
T Consensus 79 P~~~~ls~~q~~~l~~l~~~~~ 100 (121)
T 1xao_A 79 PENHFTSEENLKKLEEILPPRI 100 (121)
T ss_dssp CCTTCSCHHHHHHHHHHSCCCC
T ss_pred CCCCCCCHHHHHHHHHHccccc
Confidence 999 99999999999998664
No 8
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.39 E-value=4.2e-13 Score=101.14 Aligned_cols=79 Identities=8% Similarity=0.004 Sum_probs=68.8
Q ss_pred CCCCCCCCCEEEEEEeehHhHhcCeEEEEEeeeEEecCCCCceeEEEeeEEEEEEeCCCCCCCCEEEEccCCCCCC-CCc
Q psy11462 26 QDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKEPLEYS-TSS 104 (237)
Q Consensus 26 ~~~~~~g~di~~~l~lsL~ea~~G~~k~v~~~r~~~~g~G~~~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~G 104 (237)
....+.|.|++++++|||.||+.|++++|... .| .++|.||+|+++|++++++|+|++.. .+|
T Consensus 5 ~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tl------dG----------~~~v~ip~g~~~G~~~rl~G~G~p~~~~~G 68 (109)
T 3i38_A 5 PLFDIVGHNLEIVLPLAPWEAALGAKVTVPTL------KE----------SILLTVPPGSQAGQRLRIKGKGLVSKTHTG 68 (109)
T ss_dssp CCCEEETTEEEEEEEECHHHHHHCEEEEECCS------SS----------CEEEEECTTCCTTCEEEETTCSCBCSSCBC
T ss_pred CCeEEECCEEEEEEEcCHHHHhCCCEEEEEcC------CC----------CEEEeeCCCcCcCeEEEECCccCCCCCCCc
Confidence 34557899999999999999999999998876 56 58999999999999999999999866 689
Q ss_pred cEEEEEEecCCcceee
Q psy11462 105 EVIVITKDKPHDVFWR 120 (237)
Q Consensus 105 Dl~v~i~v~~~~~f~r 120 (237)
||||+++|.-+.....
T Consensus 69 DL~v~~~V~~P~~Ls~ 84 (109)
T 3i38_A 69 DLFAVIKIVMPTKPDE 84 (109)
T ss_dssp CEEEEEEECCCSSCCH
T ss_pred CEEEEEEEECCCCCCH
Confidence 9999999987665443
No 9
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.30 E-value=3.4e-12 Score=97.90 Aligned_cols=74 Identities=12% Similarity=0.063 Sum_probs=64.6
Q ss_pred CCCCCCEEEEEEeehHhHhcCeEEEEEeeeEEecCCCCceeEEEeeEEEEEEeCCC--CCCCCEEEEccCCCCCC---CC
Q psy11462 29 TLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPG--LPEHTVFKFSKEPLEYS---TS 103 (237)
Q Consensus 29 ~~~g~di~~~l~lsL~ea~~G~~k~v~~~r~~~~g~G~~~g~v~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~---~~ 103 (237)
.+.|.|++++++|||.||+.|+++.|+.. .| +.+.|.||+| +++|++++++|+|++.. .+
T Consensus 3 ~R~G~DL~~~~~Isl~eAllG~~i~v~tl------dG---------~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~ 67 (121)
T 1xao_A 3 KRDGDDLVYEAEIDLLTAIAGGEFALEHV------SG---------DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGY 67 (121)
T ss_dssp EEETTEEEEEEEEEHHHHHHCEEEEEECT------TS---------CEEEEEECTTSCCCTTCEEEETTCSCC------C
T ss_pred eEECCeEEEEEEcCHHHHhCCCEEEEecC------CC---------CEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCC
Confidence 36799999999999999999999999876 67 4789999999 99999999999999865 47
Q ss_pred ccEEEEEEecCCcc
Q psy11462 104 SEVIVITKDKPHDV 117 (237)
Q Consensus 104 GDl~v~i~v~~~~~ 117 (237)
|||||+++|.-+..
T Consensus 68 GDL~V~~~V~~P~~ 81 (121)
T 1xao_A 68 GNLIIKFTIKFPEN 81 (121)
T ss_dssp CCEEEEEEEECCCT
T ss_pred CCEEEEEEEECCCC
Confidence 99999999987665
No 10
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=99.20 E-value=1.7e-11 Score=100.10 Aligned_cols=95 Identities=13% Similarity=0.058 Sum_probs=75.5
Q ss_pred CCChhhHhhhhhcCCCCCCCCCCCCCCEEEEEEeehHhHhcCeEEEEEeeeEEecCCCCceeEEEeeEEEEEEeCCCCCC
Q psy11462 8 DMRKRAILRNLQGEKGSKQDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPE 87 (237)
Q Consensus 8 ~~~~~d~f~~~fg~~g~~~~~~~~g~di~~~l~lsL~ea~~G~~k~v~~~r~~~~g~G~~~g~v~~~~~l~V~Ip~G~~~ 87 (237)
+..+.|++-.+- -.++....+.|+|++++++|||.||+.|+++.++.. .| +.++|.+|+|+++
T Consensus 70 gg~~GDl~v~i~--~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tl------dG---------~~v~i~ip~~t~~ 132 (180)
T 2q2g_A 70 GTSPGDLVLIIQ--TKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTL------DN---------RNLQIPIKEIVNP 132 (180)
T ss_dssp TSCCCEEEEEEE--ECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECT------TC---------CEEEEEECSCCCT
T ss_pred CCccccEEEEEE--EEecccEEEcCCEEEEEEEcCHHHHhCCCEEEeeCC------CC---------CEEEEECCCccCC
Confidence 344566653332 223345568899999999999999999999999887 66 4789999999999
Q ss_pred CCEEEEccCCCCCC----CCccEEEEEEecCCccee
Q psy11462 88 HTVFKFSKEPLEYS----TSSEVIVITKDKPHDVFW 119 (237)
Q Consensus 88 G~~i~~~g~G~~~~----~~GDl~v~i~v~~~~~f~ 119 (237)
|++++++|+|++.. .+|||||+++|.-+....
T Consensus 133 g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls 168 (180)
T 2q2g_A 133 KTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLT 168 (180)
T ss_dssp TCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCC
T ss_pred CEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCC
Confidence 99999999999854 479999999998665443
No 11
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=99.19 E-value=1.1e-11 Score=100.39 Aligned_cols=95 Identities=12% Similarity=0.102 Sum_probs=74.8
Q ss_pred CCChhhHhhhhhcCCCCCCCCCCCCCCEEEEEEeehHhHhcCeEEEEEeeeEEecCCCCceeEEEeeEEEEEEeCCCCCC
Q psy11462 8 DMRKRAILRNLQGEKGSKQDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPE 87 (237)
Q Consensus 8 ~~~~~d~f~~~fg~~g~~~~~~~~g~di~~~l~lsL~ea~~G~~k~v~~~r~~~~g~G~~~g~v~~~~~l~V~Ip~G~~~ 87 (237)
+..+.|++-.+- -.++....+.|.|++++++|||.||+.|+++.++.. .| +.++|.+|+|+++
T Consensus 64 gg~~GDl~v~i~--v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tl------dG---------~~~~i~i~~~t~~ 126 (170)
T 1c3g_A 64 TGRRKTLQFVIQ--EKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTI------DG---------RTLPLSRVQPVQP 126 (170)
T ss_dssp SSCBCEEEEEEE--ECCCSSEEEETTEEEEEECCBHHHHHHCEEEEEECS------SS---------CEEEEEESSCCCT
T ss_pred CCccccEEEEEE--EccCCccEEeCCcEeEEEEcCHHHHhCCCeEEeeCC------CC---------CEEEEECCCccCC
Confidence 344556553322 223344567899999999999999999999999877 66 4689999999999
Q ss_pred CCEEEEccCCCCCC----CCccEEEEEEecCCccee
Q psy11462 88 HTVFKFSKEPLEYS----TSSEVIVITKDKPHDVFW 119 (237)
Q Consensus 88 G~~i~~~g~G~~~~----~~GDl~v~i~v~~~~~f~ 119 (237)
|+.++++|+|++.. .+|||||+++|.-+....
T Consensus 127 g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls 162 (170)
T 1c3g_A 127 SQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLN 162 (170)
T ss_dssp TCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCC
T ss_pred CcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCC
Confidence 99999999999864 469999999998665443
No 12
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=99.11 E-value=1.1e-10 Score=95.39 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=68.9
Q ss_pred CCCCCCCCCCEEEEEEeehHhHhcCeEEEEEeeeEEecCCCCceeEEEeeEEEEEEeCCCCCCCCEEEEccCCCCCC---
Q psy11462 25 KQDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKEPLEYS--- 101 (237)
Q Consensus 25 ~~~~~~~g~di~~~l~lsL~ea~~G~~k~v~~~r~~~~g~G~~~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~--- 101 (237)
+....+.|+|++++++|||.||+.|+++.++.. .| +.+.|.+|+|+++|+.++++|+|.+..
T Consensus 85 h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tl------dG---------~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~ 149 (181)
T 3agx_A 85 HNIFKRDGSDVIYPARISLREALCGCTVNVPTL------DG---------RTIPVVFKDVIRPGMRRKVPGEGLPLPKTP 149 (181)
T ss_dssp CSSCEEETTEEEEEEEEEHHHHHHCEEEEEECT------TS---------CEEEEEECSCCCTTCEEEETTCSCBCSSST
T ss_pred cccceeeCCcEEEEEEcCHHHHhCCCEEEeECC------CC---------CEEEEECCCccCCCcEEEECCcCCCcCCCC
Confidence 344567899999999999999999999999876 67 478999999999999999999999864
Q ss_pred -CCccEEEEEEecCCccee
Q psy11462 102 -TSSEVIVITKDKPHDVFW 119 (237)
Q Consensus 102 -~~GDl~v~i~v~~~~~f~ 119 (237)
.+|||||+++|.-+....
T Consensus 150 ~~~GDL~V~~~V~~P~~ls 168 (181)
T 3agx_A 150 EKRGDLIIEFEVIFPERIP 168 (181)
T ss_dssp TSBCCEEEEEEEECCSCCC
T ss_pred CCcCCEEEEEEEECCCCCC
Confidence 469999999998765443
No 13
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.11 E-value=6.6e-11 Score=101.32 Aligned_cols=91 Identities=10% Similarity=0.066 Sum_probs=73.7
Q ss_pred ChhhHhhhhhcCCCCCCCCCCCCCCEEEEEEeehHhHhcCeEEEEEeeeEEecCCCCceeEEEeeEEEEEEeCCC--CCC
Q psy11462 10 RKRAILRNLQGEKGSKQDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPG--LPE 87 (237)
Q Consensus 10 ~~~d~f~~~fg~~g~~~~~~~~g~di~~~l~lsL~ea~~G~~k~v~~~r~~~~g~G~~~g~v~~~~~l~V~Ip~G--~~~ 87 (237)
.+.|+|-.+- -.++..+.+.|+|++++++|||.||+.|++++|+.. .| +.++|.||+| +++
T Consensus 141 ~~GDl~v~i~--v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tl------dG---------~~~~i~ip~g~vt~~ 203 (248)
T 1nlt_A 141 IPGDVVFIVS--ERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHV------SG---------DWLKVGIVPGEVIAP 203 (248)
T ss_dssp BCCCEEEEEE--ECCCSSCEEETTEEEEEEEEEHHHHHHCBCCEEECS------SS---------CEEECCBCTTTTCST
T ss_pred CcceEEEEEE--EecCccceeeCCEEEEEEEeCHHHHhcCCEEEEeCC------CC---------CEEEEEeCCCCeeCC
Confidence 4456653332 223345668999999999999999999999999877 67 4789999999 999
Q ss_pred CCEEEEccCCCCCC---CCccEEEEEEecCCcc
Q psy11462 88 HTVFKFSKEPLEYS---TSSEVIVITKDKPHDV 117 (237)
Q Consensus 88 G~~i~~~g~G~~~~---~~GDl~v~i~v~~~~~ 117 (237)
|+.++++|+|++.. ..|||||+++|.-+..
T Consensus 204 g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~ 236 (248)
T 1nlt_A 204 GMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPEN 236 (248)
T ss_dssp TCEEEETTCSCBCSSSCSBCCEEEEEEEECCC-
T ss_pred CeEEEEcCCCCccCCCCCcCCEEEEEEEECCCC
Confidence 99999999999865 4699999999986654
No 14
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.05 E-value=1.6e-10 Score=102.82 Aligned_cols=91 Identities=8% Similarity=0.000 Sum_probs=74.1
Q ss_pred hhhHhhhhhcCCCCCCCCCCCCCCEEEEEEeehHhHhcCeEEEEEeeeEEecCCCCceeEEEeeEEEEEEeCCCCCCCCE
Q psy11462 11 KRAILRNLQGEKGSKQDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTV 90 (237)
Q Consensus 11 ~~d~f~~~fg~~g~~~~~~~~g~di~~~l~lsL~ea~~G~~k~v~~~r~~~~g~G~~~g~v~~~~~l~V~Ip~G~~~G~~ 90 (237)
+.|++ +.-.-.+.....+.|.|++++++|||.||++|++++|+.. .| .++|.||+|+++|++
T Consensus 212 ~GDL~--v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptL------dG----------~v~l~ip~gt~~g~~ 273 (329)
T 3lz8_A 212 NGDLW--LVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTL------KE----------SILLTVPPGSQAGQR 273 (329)
T ss_dssp CCCEE--EEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCS------SS----------CEEEEECTTCCTTCE
T ss_pred CCcEE--EEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECC------CC----------CEEEEECCCCCCCCE
Confidence 45555 2222333344568999999999999999999999999887 67 468999999999999
Q ss_pred EEEccCCCCCC-CCccEEEEEEecCCccee
Q psy11462 91 FKFSKEPLEYS-TSSEVIVITKDKPHDVFW 119 (237)
Q Consensus 91 i~~~g~G~~~~-~~GDl~v~i~v~~~~~f~ 119 (237)
++++|+|.+.. .+|||||++.|.-+....
T Consensus 274 ~rl~G~GmP~~~~rGDL~v~~~V~~P~~l~ 303 (329)
T 3lz8_A 274 LRIKGKGLVSKTHTGDLFAVIKIVMPTKPD 303 (329)
T ss_dssp EEETTCSCBCSSCBCCEEEEEEECCCSSCC
T ss_pred EEEcCCCCCCCCCCCCEEEEEEEECCCCCC
Confidence 99999999876 789999999998666443
No 15
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.75 E-value=0.00031 Score=51.67 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=29.0
Q ss_pred CCCEEEEEEeehHhHhcCeEEEEEeeeEEec
Q psy11462 32 SNQQVHTVVVSLEELYRGCVKLLTVPVQEID 62 (237)
Q Consensus 32 g~di~~~l~lsL~ea~~G~~k~v~~~r~~~~ 62 (237)
|+|+.+.|.|||+|||+|+++++.+.+.+.|
T Consensus 1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C 31 (104)
T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTC 31 (104)
T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCCSSCCEEC
T ss_pred CCceEEEEEEEHHHHcCCCEEEEEeeeeeEC
Confidence 5788899999999999999999999999996
No 16
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=56.47 E-value=9 Score=24.99 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhHH-------HHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILDS-------KLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 234 (237)
.++.+|...|+..+...........+.|.. .++.||.|
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2da1_A 13 RITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRN 57 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhh
Confidence 589999999999998776655554444544 45888865
No 17
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=54.97 E-value=12 Score=24.30 Aligned_cols=38 Identities=11% Similarity=0.212 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++++|...|+..+....+......+.|. ..++.||.|
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 53 (68)
T 1yz8_P 9 HFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKN 53 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 58999999999999877665444444443 345888865
No 18
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.19 E-value=10 Score=25.25 Aligned_cols=39 Identities=8% Similarity=0.009 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHhhccCCCCCCcchhhhHH-------HHHhhhcC
Q psy11462 196 KFLSPDLRKTLSTLLDEDKGKNNTTRQILDS-------KLKSKAGN 234 (237)
Q Consensus 196 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 234 (237)
..++.+|...|+..+...........+.|.. .++.||.|
T Consensus 13 ~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqN 58 (76)
T 2dn0_A 13 NKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSD 58 (76)
T ss_dssp CCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHH
Confidence 4589999999999998777655554455544 45888865
No 19
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=50.70 E-value=13 Score=24.20 Aligned_cols=38 Identities=11% Similarity=-0.050 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhHHH-------HHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILDSK-------LKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 234 (237)
.++.+|...|+..+....+......+.|..+ ++.||.|
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqN 52 (68)
T 1ahd_P 8 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQN 52 (68)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHH
Confidence 5899999999999987776555544445444 4888865
No 20
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=49.93 E-value=8.5 Score=24.28 Aligned_cols=38 Identities=18% Similarity=0.075 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++.+|...|+..+...........+.|. ..++.||.|
T Consensus 7 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 51 (60)
T 1jgg_A 7 AFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQN 51 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHH
Confidence 57899999999998877664433444443 345888865
No 21
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=49.78 E-value=7.4 Score=24.29 Aligned_cols=38 Identities=18% Similarity=0.064 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhHH-------HHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILDS-------KLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 234 (237)
.++++|...|+..............+.|.. .++.||.|
T Consensus 3 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 47 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQN 47 (56)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHH
Confidence 478899999999887766644434444444 34888865
No 22
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.08 E-value=9 Score=25.00 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhHH-------HHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILDS-------KLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 234 (237)
.++.+|...|+..+...........+.|.. .++.||.|
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2dmu_A 13 IFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKN 57 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccc
Confidence 589999999999998766544334444443 45888865
No 23
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=48.03 E-value=9.5 Score=24.24 Aligned_cols=38 Identities=21% Similarity=0.056 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhHHH-------HHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILDSK-------LKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 234 (237)
.++++|...|+..+...........+.|..+ ++.||.|
T Consensus 9 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 53 (62)
T 2vi6_A 9 VFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQN 53 (62)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHH
Confidence 5799999999999887766444444445444 4888865
No 24
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=48.01 E-value=8.1 Score=24.42 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++.+|...|+..+...........+.|. ..++.||.|
T Consensus 11 ~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqN 55 (61)
T 1akh_A 11 SISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFIN 55 (61)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 47899999999998877554333444443 345888865
No 25
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=47.62 E-value=11 Score=24.27 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++++|...|+..+...........+.|. ..++.||.|
T Consensus 7 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 51 (67)
T 2k40_A 7 AFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQN 51 (67)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHh
Confidence 57899999999998766554333334443 345888865
No 26
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=46.93 E-value=9.8 Score=24.52 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhh-------HHHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQIL-------DSKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 234 (237)
.++++|...|+..+...........+.| ...++.||.|
T Consensus 9 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 53 (66)
T 1bw5_A 9 VLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQN 53 (66)
T ss_dssp CCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHH
Confidence 5799999999999987665433333334 3445888865
No 27
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=46.45 E-value=9.5 Score=24.05 Aligned_cols=38 Identities=13% Similarity=0.075 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++.+|...|+..+...........+.|. ..++.||.|
T Consensus 5 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 49 (60)
T 3a02_A 5 TFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQN 49 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhh
Confidence 47899999999998776554333334443 345888865
No 28
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.27 E-value=11 Score=27.20 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhHHHH
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILDSKL 228 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 228 (237)
.+++.|...|++.+....+......+.|...+
T Consensus 12 ~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~l 43 (102)
T 2da6_A 12 KWGPASQQILYQAYDRQKNPSKEEREALVEEC 43 (102)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 46888888888887776654433444444444
No 29
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.11 E-value=13 Score=23.99 Aligned_cols=38 Identities=8% Similarity=-0.046 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhHHH-------HHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILDSK-------LKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 234 (237)
...++|...|++.+...........+.|..+ ++.||.|
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqN 53 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEK 53 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhc
Confidence 4568999999999876655433333444444 4888865
No 30
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=45.80 E-value=11 Score=23.79 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHhhcc---CCCCCCcchhhh-------HHHHHhhhcC
Q psy11462 196 KFLSPDLRKTLSTLLDE---DKGKNNTTRQIL-------DSKLKSKAGN 234 (237)
Q Consensus 196 ~~l~~~~~~ll~~~~~~---~~~~~~~~~~~~-------~~~~~~~~~~ 234 (237)
..++++|...|+..+.. .........+.| ...++.||.|
T Consensus 3 ~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqN 51 (60)
T 1k61_A 3 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSN 51 (60)
T ss_dssp CSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 35789999999999887 333222223333 3456888865
No 31
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=45.61 E-value=9.5 Score=23.80 Aligned_cols=38 Identities=11% Similarity=0.016 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++++|...|+..+...........+.|. ..++.||.|
T Consensus 6 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 50 (58)
T 1ig7_A 6 PFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQN 50 (58)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhH
Confidence 57899999999998876654433333343 445888865
No 32
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=45.27 E-value=11 Score=23.85 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++++|...|+..+...........+.|. ..++.||.|
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 53 (61)
T 2hdd_A 9 AFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKN 53 (61)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhh
Confidence 57999999999998876664433344443 345888865
No 33
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=44.66 E-value=13 Score=24.05 Aligned_cols=38 Identities=11% Similarity=-0.019 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++.+|...|+..+...........+.|. ..++.||.|
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 52 (68)
T 1zq3_P 8 TFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKN 52 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHH
Confidence 58999999999998776654433444443 345888865
No 34
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=43.90 E-value=9.3 Score=24.90 Aligned_cols=38 Identities=11% Similarity=0.046 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++.+|...|+..+...........+.|. ..++.||.|
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2da2_A 13 RFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQN 57 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHh
Confidence 58999999999999876654433334443 445888865
No 35
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=43.76 E-value=9.4 Score=24.96 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhh-------HHHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQIL-------DSKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 234 (237)
.++.+|...|+..+...........+.| ...++.||.|
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 57 (70)
T 2e1o_A 13 RFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQN 57 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHh
Confidence 4899999999999977665443333434 3445888865
No 36
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.63 E-value=9.9 Score=25.48 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++++|...|+..+....+......+.|. ..++.||.|
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 57 (80)
T 2dmq_A 13 SFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQN 57 (80)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHH
Confidence 58999999999998876654433334443 345888865
No 37
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.59 E-value=11 Score=24.62 Aligned_cols=38 Identities=16% Similarity=0.032 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhh-------HHHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQIL-------DSKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 234 (237)
.++.+|...|+..+...........+.| ...++.||.|
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 57 (70)
T 2djn_A 13 IYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQN 57 (70)
T ss_dssp SSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5899999999999877665433333334 3445888865
No 38
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=43.21 E-value=12 Score=23.82 Aligned_cols=38 Identities=16% Similarity=-0.052 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++..|...|+..+...........+.|. ..++.||.|
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 53 (63)
T 2h1k_A 9 AYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQN 53 (63)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHh
Confidence 57999999999998877664444444443 345888865
No 39
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=42.46 E-value=11 Score=24.70 Aligned_cols=38 Identities=13% Similarity=0.037 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++++|...|+..+...........+.|. ..++.||.|
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2cra_A 13 PYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQN 57 (70)
T ss_dssp CSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHh
Confidence 58999999999998876654433334443 345888865
No 40
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.67 E-value=13 Score=25.01 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhHH-------HHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILDS-------KLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 234 (237)
.++.+|...|+..+....+......+.|.. .++.||.|
T Consensus 23 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 67 (80)
T 2dmt_A 23 VFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQN 67 (80)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHH
Confidence 589999999999998776644444444443 45888865
No 41
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=41.64 E-value=16 Score=22.46 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++.+|...|+..+...........+.|. ..++.||.|
T Consensus 8 ~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 52 (58)
T 3rkq_A 8 LFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQN 52 (58)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHH
Confidence 57899999999998766554333333333 456888865
No 42
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.29 E-value=13 Score=24.67 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhHH-------HHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILDS-------KLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 234 (237)
.++.+|...|+..+....+......+.|.. .++.||.|
T Consensus 13 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (75)
T 2da5_A 13 ERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSE 57 (75)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHH
Confidence 479999999999988776654444444443 45888865
No 43
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=40.84 E-value=20 Score=30.63 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=34.4
Q ss_pred EEEECCCCCCHHHHHHHHHhhccCCCCCCcchhh-hHHHHHh--hhcCCCC
Q psy11462 190 LSIDYPKFLSPDLRKTLSTLLDEDKGKNNTTRQI-LDSKLKS--KAGNLDF 237 (237)
Q Consensus 190 ~~V~~P~~l~~~~~~ll~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~ 237 (237)
-.+.+|+.++++-+++++++|..+......-+|. -...|++ ||.+.||
T Consensus 249 ~~~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~~idw 299 (311)
T 4aw0_A 249 LEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 299 (311)
T ss_dssp TCCCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCHHHHHTSGGGTTCCC
T ss_pred CCCCCCcccCHHHHHHHHHHccCCHhHCcChHHHcCCHHHHCCCCcCCCCH
Confidence 3457899999999999999998877655544432 1233554 8988775
No 44
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=40.70 E-value=11 Score=25.28 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++.+|...|+..+....+......+.|. ..++.||.|
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 57 (80)
T 2dms_A 13 TFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKN 57 (80)
T ss_dssp SCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHH
Confidence 58999999999999877664433334443 445888865
No 45
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=40.18 E-value=14 Score=24.77 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++.+|...|+..+....+......+.|. ..++.||.|
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 57 (80)
T 2cue_A 13 SFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSN 57 (80)
T ss_dssp CSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHH
Confidence 58999999999998776654333334443 345888865
No 46
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=39.73 E-value=14 Score=23.93 Aligned_cols=38 Identities=21% Similarity=0.145 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhHH-------HHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILDS-------KLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 234 (237)
.++..|...|+..+....+......+.|.. .++.||.|
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 52 (68)
T 1ftt_A 8 LFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQN 52 (68)
T ss_dssp SCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHH
Confidence 578999999999988776654444444443 45888865
No 47
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=38.82 E-value=19 Score=23.59 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHhh---ccCCCCCCcchhhh-------HHHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLL---DEDKGKNNTTRQIL-------DSKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~---~~~~~~~~~~~~~~-------~~~~~~~~~~ 234 (237)
.++.+|...|+..+ ...........+.| ...++.||.|
T Consensus 7 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqN 54 (73)
T 1puf_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGN 54 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 57899999999988 43333222233333 4456888865
No 48
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=38.45 E-value=18 Score=23.70 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHhhcc-CCCCCCcchhhhHHH-------HHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDE-DKGKNNTTRQILDSK-------LKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~ 234 (237)
.++.+|...|+..+.. ..+......+.|..+ ++.||.|
T Consensus 7 ~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 52 (72)
T 1uhs_A 7 TMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQ 52 (72)
T ss_dssp CCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHH
Confidence 4789999999999875 555433334444443 4888865
No 49
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=38.09 E-value=19 Score=24.43 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHhhc---cCCCCCCcchhhh-------HHHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLD---EDKGKNNTTRQIL-------DSKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~---~~~~~~~~~~~~~-------~~~~~~~~~~ 234 (237)
.++.+|...|+..+. ...+......+.| ...++.||.|
T Consensus 7 ~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqN 54 (87)
T 1b72_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGN 54 (87)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 578999999999883 3333222233334 4456889865
No 50
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=37.72 E-value=13 Score=23.64 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHhh---ccCCCCCCcchhhh-------HHHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLL---DEDKGKNNTTRQIL-------DSKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~---~~~~~~~~~~~~~~-------~~~~~~~~~~ 234 (237)
.++.+|...|+..+ ....+......+.| ...++.||.|
T Consensus 9 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqN 56 (64)
T 1du6_A 9 HMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGN 56 (64)
T ss_dssp SSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 47888999999988 33333222233334 3456889865
No 51
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=36.95 E-value=14 Score=25.10 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++++|...|++.+.........+.+.|. ..++.||.|
T Consensus 9 kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqN 53 (76)
T 2ecc_A 9 RKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGD 53 (76)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHh
Confidence 58999999999999877665444433343 357888865
No 52
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=36.92 E-value=17 Score=23.92 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhHHH-------HHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILDSK-------LKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 234 (237)
.+++.|...|+..+....+......+.|..+ ++.||.|
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 57 (73)
T 2l7z_A 13 PYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQN 57 (73)
T ss_dssp CSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4789999999999887766443344445443 4788865
No 53
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=36.82 E-value=15 Score=24.44 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++..|...|+..+....+......+.|. ..++.||.|
T Consensus 15 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 59 (77)
T 1nk2_P 15 LFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQN 59 (77)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHH
Confidence 58999999999999876664433334443 345888865
No 54
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.72 E-value=17 Score=25.11 Aligned_cols=38 Identities=11% Similarity=-0.048 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++.+|...|+..+....+......+.|. ..++.||.|
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqN 63 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSE 63 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHh
Confidence 37999999999999877664433444443 345888865
No 55
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=36.65 E-value=17 Score=23.67 Aligned_cols=38 Identities=8% Similarity=0.006 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHhhccCCCCCCc---chhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNT---TRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~---~~~~~~-------~~~~~~~~~ 234 (237)
.+++++...|+..+..-...++| ..+.|. ..+++||.|
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqN 51 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFIN 51 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHH
Confidence 57889999999988843333334 223333 456888865
No 56
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=36.06 E-value=28 Score=29.53 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=32.3
Q ss_pred EEECCCCCCHHHHHHHHHhhccCCCCCCcchhhhHHHHHh--hhcCCCC
Q psy11462 191 SIDYPKFLSPDLRKTLSTLLDEDKGKNNTTRQILDSKLKS--KAGNLDF 237 (237)
Q Consensus 191 ~V~~P~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 237 (237)
.+.+|+.++++-+++++++|..+...........+..+++ ||++.||
T Consensus 242 ~~~~p~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~Hp~f~~idw 290 (304)
T 3ubd_A 242 KLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDW 290 (304)
T ss_dssp CCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTSGGGTTCCH
T ss_pred CCCCCCcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHcCccccCCCH
Confidence 4568999999999999999987766544432223444553 7777653
No 57
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=35.88 E-value=18 Score=24.29 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++.+|...|+..+....+......+.|. ..++.||.|
T Consensus 24 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 68 (81)
T 1fjl_A 24 TFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQN 68 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 58999999999999876554333334443 445888865
No 58
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=34.68 E-value=10 Score=25.37 Aligned_cols=38 Identities=11% Similarity=0.035 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++.+|...|+..+....+......+.|. ..++.||.|
T Consensus 23 ~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 67 (80)
T 2da3_A 23 TITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQN 67 (80)
T ss_dssp SCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHH
Confidence 47899999999988776554333333343 345888865
No 59
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=34.19 E-value=23 Score=24.68 Aligned_cols=39 Identities=13% Similarity=0.018 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHhhccCCCCCCcchhhhHHH-------HHhhhcC
Q psy11462 196 KFLSPDLRKTLSTLLDEDKGKNNTTRQILDSK-------LKSKAGN 234 (237)
Q Consensus 196 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 234 (237)
..++.+|...|+..+....+......+.|..+ ++.||.|
T Consensus 39 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 84 (97)
T 1b72_A 39 TNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQN 84 (97)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHH
Confidence 35899999999999877665443344444444 4888865
No 60
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.62 E-value=9.6 Score=25.62 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHhhccC-CCCCCc---chhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDED-KGKNNT---TRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~-~~~~~~---~~~~~~-------~~~~~~~~~ 234 (237)
.++.+|...|+..+... ....+| ..+.|. ..++.||.|
T Consensus 14 ~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqN 62 (80)
T 2da4_A 14 QFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGN 62 (80)
T ss_dssp CCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHH
Confidence 58999999999998766 111223 223343 345888865
No 61
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=33.08 E-value=21 Score=24.01 Aligned_cols=39 Identities=10% Similarity=-0.005 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHhhccCCCCCCcchhhhHH-------HHHhhhcC
Q psy11462 196 KFLSPDLRKTLSTLLDEDKGKNNTTRQILDS-------KLKSKAGN 234 (237)
Q Consensus 196 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 234 (237)
..++.+|...|+..+...........+.|.. .++.||.|
T Consensus 25 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 70 (81)
T 1b8i_A 25 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQN 70 (81)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHH
Confidence 3589999999999988766644334444443 45888865
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=32.84 E-value=22 Score=24.24 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHhhcc---CCCCCCcchhhh-------HHHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDE---DKGKNNTTRQIL-------DSKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~---~~~~~~~~~~~~-------~~~~~~~~~~ 234 (237)
.++.+|...|+..+.. ..+......+.| ...++.||.|
T Consensus 33 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqN 80 (87)
T 1mnm_C 33 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSN 80 (87)
T ss_dssp CCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5899999999999987 443322233334 4456899865
No 63
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=32.28 E-value=18 Score=24.49 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHhhcc----CCCCCCcchhhhHHH-------HHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDE----DKGKNNTTRQILDSK-------LKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~----~~~~~~~~~~~~~~~-------~~~~~~~ 234 (237)
.++.+|...|++.+.. ..+......+.|..+ +|-||-|
T Consensus 23 ~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqN 71 (80)
T 1wh5_A 23 KFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHN 71 (80)
T ss_dssp CCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccc
Confidence 5899999999998887 555433344444444 4888865
No 64
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=31.70 E-value=23 Score=23.48 Aligned_cols=38 Identities=11% Similarity=-0.105 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhHH-------HHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILDS-------KLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 234 (237)
.++..|...|+..+....+......+.|.. .++.||.|
T Consensus 19 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 63 (77)
T 1puf_A 19 PYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQN 63 (77)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 589999999999988766644334444443 45888865
No 65
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=31.53 E-value=23 Score=23.19 Aligned_cols=38 Identities=13% Similarity=0.064 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHhhcc-CCCCCCcchhhhHH-------HHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDE-DKGKNNTTRQILDS-------KLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~ 234 (237)
.++++|...|+..+.. .........+.|.. .++.||.|
T Consensus 8 ~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqN 53 (73)
T 2hi3_A 8 GPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQ 53 (73)
T ss_dssp SCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 4789999999999874 65544333444443 45888865
No 66
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=31.50 E-value=24 Score=24.06 Aligned_cols=38 Identities=11% Similarity=-0.039 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++.+|...|+..+...........+.|. ..++.||.|
T Consensus 34 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqN 78 (88)
T 2r5y_A 34 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQN 78 (88)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHH
Confidence 58999999999998776654333334443 445888865
No 67
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=30.98 E-value=20 Score=24.08 Aligned_cols=38 Identities=18% Similarity=0.079 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhHH-------HHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILDS-------KLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 234 (237)
.++.+|...|+..+....+......+.|.. .++.||.|
T Consensus 28 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqN 72 (84)
T 2kt0_A 28 VFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQN 72 (84)
T ss_dssp CCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 589999999999998766644333444443 45888865
No 68
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=30.04 E-value=26 Score=22.92 Aligned_cols=38 Identities=8% Similarity=-0.045 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++++|...|+..+...........+.|. ..++.||.|
T Consensus 12 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 56 (74)
T 2ly9_A 12 KKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSD 56 (74)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChh
Confidence 58999999999998876664433333343 346788865
No 69
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=29.80 E-value=25 Score=22.95 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHhhccCCCCCCc---chhhh-------HHHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNT---TRQIL-------DSKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~---~~~~~-------~~~~~~~~~~ 234 (237)
.++.+|...|+..+..-...++| ..+.| ...++.||.|
T Consensus 13 ~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqN 60 (73)
T 1x2n_A 13 VLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFIN 60 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHH
Confidence 58999999999988652222233 33334 4456889865
No 70
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=29.58 E-value=21 Score=23.54 Aligned_cols=38 Identities=11% Similarity=-0.021 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
+-+++|...|++.+...........+.|. ..++.||.|
T Consensus 10 ~~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqN 54 (66)
T 3nau_A 10 KKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSD 54 (66)
T ss_dssp -CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhccc
Confidence 45788989999888887776544333333 456888865
No 71
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} SCOP: b.29.1.3 PDB: 1bkz_A 2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Probab=28.30 E-value=68 Score=23.76 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCCCCEEEEccCCC
Q psy11462 76 IVHIKIKPGLPEHTVFKFSKEPL 98 (237)
Q Consensus 76 ~l~V~Ip~G~~~G~~i~~~g~G~ 98 (237)
...-.||.|++.|+.|++.|.-.
T Consensus 7 P~~~~i~~gl~~G~~i~I~G~v~ 29 (138)
T 3zxf_A 7 PHKSSLPEGIRPGTVLRIRGLVP 29 (138)
T ss_dssp CEEEECTTCCCSSEEEEEEEEEC
T ss_pred CEEeecCCCCCCCCEEEEEEEEC
Confidence 35678999999999999998643
No 72
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.14 E-value=23 Score=23.33 Aligned_cols=38 Identities=18% Similarity=0.083 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhHH-------HHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILDS-------KLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 234 (237)
.++..|...|++.+...........+.|.. .++.||.|
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqN 54 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQN 54 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchh
Confidence 478999999999987776644333333433 45788865
No 73
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=27.60 E-value=96 Score=28.04 Aligned_cols=141 Identities=11% Similarity=0.074 Sum_probs=82.2
Q ss_pred eeEEEeeEEEEEEeCCCCCCCCEEEEccCCCCCCCCccEEEEEEecCCc-c-eee------eCcceEEEEEe---c-HHh
Q psy11462 68 LNIINTSKIVHIKIKPGLPEHTVFKFSKEPLEYSTSSEVIVITKDKPHD-V-FWR------EGADLHMKKNV---S-LKE 135 (237)
Q Consensus 68 ~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~GDl~v~i~v~~~~-~-f~r------~g~dL~~~~~I---~-l~~ 135 (237)
...+++...+++.|. |.-+|+.+.+.|+|.-.|..|+..+.+.|.... . |+. -|+..++..|= . +.+
T Consensus 153 ~~~~~~~m~~~~~~~-G~vngh~f~~~g~G~g~p~~G~~~~~~~v~~g~plpfs~~il~~~~~~~~f~~yP~~i~~~fk~ 231 (440)
T 3u0k_A 153 NSLIKENMRMKVVLE-GSVNGHQFKCTGEGEGNPYMGTQTMRIKVIEGGPLPFAFDILATSXXSRTFIKYPKGIPDFFKQ 231 (440)
T ss_dssp CTTSCSSEEEEEEEE-EEETTEEEEEEEEEEEETTTTEEEEEEEEEESCSCSSCGGGGTTCC-CTTSCBCCTTSCCHHHH
T ss_pred hhhccCCceEEEEEE-EEECCeEEEEEeeecCCCCCCeEEEEEEEecCCCCCCcHHHhccccchhhhccCCCCchhHHHH
Confidence 445677788888886 777999999999876544678888888776321 0 211 12222222221 1 233
Q ss_pred Hhc-C--CeEEEEcCCCcEEEEEeCC---ccccCCcEEEEcCCCCCCCCCCCCCccEEEEEEEECCC--CCCHHHHHHHH
Q psy11462 136 ALT-G--FSFTVTTLDDRILHIPITD---LTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPK--FLSPDLRKTLS 207 (237)
Q Consensus 136 al~-G--~~i~i~tldG~~l~i~ip~---~~~~~g~~~~i~g~G~p~~~~~~~rGDl~V~~~V~~P~--~l~~~~~~ll~ 207 (237)
+.- | ++++..--||-.+++.-.- + ..--..+.+.|.++|..+. ..-.=.+.. -|. .|+++|.+.|+
T Consensus 232 ~~p~g~t~~R~~~fedgg~~t~~~~~~l~~-~~~~~~~~~~g~nFp~~GP--VMKKKTl~w---ePs~E~Lt~EEI~ELR 305 (440)
T 3u0k_A 232 SFPEGFTWERVTRYEDGGVITVMQDTSLED-GCLVYHAQVRGVNFPSNGA--VMQKKTKGW---EPTRDQLTEEQIAEFK 305 (440)
T ss_dssp TTTTCEEEEEEEEETTSCEEEEEEEEEEET-TEEEEEEEEEEECCCTTST--TTTTCEEEE---CCBCBCCCHHHHHHHH
T ss_pred hCcCCceeeEEEEecCCCEEEEeeeeEeeC-CEEEEEeeeccCCCCCCCC--ccchhhhhh---HhhHhhhhHHHHHHHH
Confidence 332 3 2455555566545444321 1 1222347788999986653 233333333 454 69999999999
Q ss_pred HhhccCCC
Q psy11462 208 TLLDEDKG 215 (237)
Q Consensus 208 ~~~~~~~~ 215 (237)
+++.....
T Consensus 306 EaF~~fDk 313 (440)
T 3u0k_A 306 EAFSLFDK 313 (440)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHcC
Confidence 99875433
No 74
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=27.14 E-value=32 Score=23.90 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.3
Q ss_pred EEECCCCCCHHHHHHHHHhhcc
Q psy11462 191 SIDYPKFLSPDLRKTLSTLLDE 212 (237)
Q Consensus 191 ~V~~P~~l~~~~~~ll~~~~~~ 212 (237)
.+.||..|++.+|.++-+++..
T Consensus 35 ~l~FP~sLs~~eR~~IH~lA~~ 56 (86)
T 1msz_A 35 QLEFPPSLNSHDRLRVHQIAEE 56 (86)
T ss_dssp EEEECTTCCSHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999888764
No 75
>3nv1_A Galectin-9, galectin 9 short isoform variant; sugar binding, sugar binding protein; 1.50A {Homo sapiens} SCOP: b.29.1.0 PDB: 3nv2_A* 3nv3_A* 3nv4_A*
Probab=26.96 E-value=83 Score=23.30 Aligned_cols=23 Identities=22% Similarity=0.106 Sum_probs=18.8
Q ss_pred EEEEeCCCCCCCCEEEEccCCCC
Q psy11462 77 VHIKIKPGLPEHTVFKFSKEPLE 99 (237)
Q Consensus 77 l~V~Ip~G~~~G~~i~~~g~G~~ 99 (237)
..-.||.|+..|+.|++.|.-..
T Consensus 10 ~~~~i~~gl~~G~~i~I~G~v~~ 32 (138)
T 3nv1_A 10 FITTILGGLYPSKSILLSGTVLP 32 (138)
T ss_dssp EEEECTTCCCTTCEEEEEEEECT
T ss_pred EEeeCCCCCCCCCEEEEEEEECC
Confidence 45678999999999999996543
No 76
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=26.95 E-value=24 Score=24.50 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhh-------HHHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQIL-------DSKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 234 (237)
.++.+|...|+..+....+......+.| -..++.||.|
T Consensus 23 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 67 (93)
T 3a01_A 23 SFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQN 67 (93)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHh
Confidence 5899999999999987766443333333 3445888865
No 77
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=26.66 E-value=29 Score=24.03 Aligned_cols=32 Identities=6% Similarity=0.161 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhHHHH
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILDSKL 228 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 228 (237)
.++++|...|++.+....+......+.|..++
T Consensus 13 ~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l 44 (95)
T 2cuf_A 13 TWRKECLAVMESYFNENQYPDEAKREEIANAC 44 (95)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 47888988888888876554333334444333
No 78
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=26.34 E-value=29 Score=23.41 Aligned_cols=37 Identities=8% Similarity=0.107 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHhhcc---CCCCCCcchhhh-------HHHHHhhhcC
Q psy11462 198 LSPDLRKTLSTLLDE---DKGKNNTTRQIL-------DSKLKSKAGN 234 (237)
Q Consensus 198 l~~~~~~ll~~~~~~---~~~~~~~~~~~~-------~~~~~~~~~~ 234 (237)
++.+|...|+..+.. ..+......+.| ...++.||.|
T Consensus 9 ft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqN 55 (83)
T 1le8_B 9 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAA 55 (83)
T ss_dssp CCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHH
Confidence 789999999999887 333322233333 4456888865
No 79
>3zsj_A Galectin-3; sugar binding protein; HET: LAT; 0.86A {Homo sapiens} SCOP: b.29.1.3 PDB: 2nmn_A* 2nn8_A* 2nmo_A* 3t1m_A* 3t1l_A* 1kjl_A* 1kjr_A* 1a3k_A* 2xg3_A* 3zsk_A 3zsl_A 3zsm_A 3ayc_A* 3aya_A* 3ayd_A* 3aye_A*
Probab=26.31 E-value=67 Score=23.81 Aligned_cols=23 Identities=4% Similarity=0.078 Sum_probs=18.9
Q ss_pred EEEEeCCCCCCCCEEEEccCCCC
Q psy11462 77 VHIKIKPGLPEHTVFKFSKEPLE 99 (237)
Q Consensus 77 l~V~Ip~G~~~G~~i~~~g~G~~ 99 (237)
..-.||.|+.+|+.|++.|.-..
T Consensus 6 ~~~~i~~gl~~G~~i~I~G~v~~ 28 (138)
T 3zsj_A 6 YNLPLPGGVVPRMLITILGTVKP 28 (138)
T ss_dssp EEEECTTCCCTTEEEEEEEEECT
T ss_pred EEeecCCCCCCCCEEEEEEEECC
Confidence 45689999999999999996543
No 80
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.58 E-value=33 Score=22.32 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++..|...|+..+...........+.|. ..++.||.|
T Consensus 15 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 59 (75)
T 2m0c_A 15 TFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQN 59 (75)
T ss_dssp SSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHH
Confidence 47999999999998876654433333333 446888865
No 81
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=23.79 E-value=53 Score=22.09 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHhhcc-----CCCCCCcchhhhHHH-------HHhhhcCC
Q psy11462 197 FLSPDLRKTLSTLLDE-----DKGKNNTTRQILDSK-------LKSKAGNL 235 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~-----~~~~~~~~~~~~~~~-------~~~~~~~~ 235 (237)
.++.+|.+.|+. +.. ..+......+.|..+ +|-||-|-
T Consensus 23 ~ft~~Ql~~Le~-F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNr 72 (80)
T 1wh7_A 23 KFTAEQKEKMLA-FAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNN 72 (80)
T ss_dssp CCCHHHHHHHHH-HHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTT
T ss_pred cCCHHHHHHHHH-HHHHcCcCCCCCCHHHHHHHHHHhCcCcCccccccccc
Confidence 589999999994 554 444333344444444 58899763
No 82
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=23.15 E-value=44 Score=23.57 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhHHH
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILDSK 227 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 227 (237)
.+++.|...|+..+....+......+.|...
T Consensus 15 ~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~ 45 (99)
T 1lfb_A 15 KWGPASQQILFQAYERQKNPSKEERETLVEE 45 (99)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4688888888888776655443333444444
No 83
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3
Probab=23.03 E-value=3.1e+02 Score=22.39 Aligned_cols=102 Identities=13% Similarity=0.046 Sum_probs=52.7
Q ss_pred cCeEEEEEeeeEEecC-C-CCceeEEEeeEEEEEEeCCCCCCCCE-EEEccCCCCCCCCccEEEEEEecCC--ccee---
Q psy11462 48 RGCVKLLTVPVQEIDP-C-SVQLNIINTSKIVHIKIKPGLPEHTV-FKFSKEPLEYSTSSEVIVITKDKPH--DVFW--- 119 (237)
Q Consensus 48 ~G~~k~v~~~r~~~~g-~-G~~~g~v~~~~~l~V~Ip~G~~~G~~-i~~~g~G~~~~~~GDl~v~i~v~~~--~~f~--- 119 (237)
..+...|.+ |++.|. . | ..+.+.|..|..+... +.+...+.. || +..++++.. ..|.
T Consensus 127 ~~Gii~V~y-rrV~C~~~gg---------~~i~f~v~~Gs~~~~~~vlv~n~~g~----g~-V~~V~ik~~~~~~W~~m~ 191 (241)
T 1n10_A 127 SAGELELQF-RRVKCKYPEG---------TKVTFHVEKGSNPNYLALLVKYVNGD----GD-VVAVDIKEKGKDKWIELK 191 (241)
T ss_dssp TTCSEEEEE-EECCCCCCTT---------CCCEEEECTTCBTTEEEEEEECCCCS----SC-EEEEEEEETTCCCCEECB
T ss_pred cCCEEEEEE-EEEeCCCCCC---------CceEEEEcCCCCcceEEEEEEecCCC----CC-EEEEEEEeCCCCCeEECc
Confidence 345666666 345563 1 2 2567777776554443 234443321 33 455556543 2333
Q ss_pred eeCcceEEEEEecHHhHhcC-CeEEEEcCCCcEEEEE--eCCccccCCcEEE
Q psy11462 120 REGADLHMKKNVSLKEALTG-FSFTVTTLDDRILHIP--ITDLTTCNQSMKV 168 (237)
Q Consensus 120 r~g~dL~~~~~I~l~~al~G-~~i~i~tldG~~l~i~--ip~~~~~~g~~~~ 168 (237)
|.-...+. ..-. ..|.| .++.|.+.+|+++... +|.. -++|+.+.
T Consensus 192 r~wG~~W~-~~~~--~~l~gpls~RvT~~~G~~v~~~nViP~~-w~~g~ty~ 239 (241)
T 1n10_A 192 ESWGAIWR-IDTP--DKLTGPFTVRYTTEGGTKTEAEDVIPEG-WKADTSYE 239 (241)
T ss_dssp CCTTTCEE-EECS--SCCCSCEEEEEEESSSCEEEEEEEECSS-CCSSEEEE
T ss_pred cCcCcEEE-eCCC--CCCCCCEEEEEEEeCCcEEEEccccCCC-CCCCCEEe
Confidence 22122222 2211 12334 4688889999977654 5777 77877654
No 84
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=22.95 E-value=56 Score=21.98 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcc---hhhh-------HHHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTT---RQIL-------DSKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~---~~~~-------~~~~~~~~~~ 234 (237)
.++.+|...|++.+......++|. ++.| ...+++||.|
T Consensus 13 ~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqN 60 (83)
T 2dmn_A 13 NLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFIN 60 (83)
T ss_dssp SCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhh
Confidence 478999999998877643334442 2222 5667888865
No 85
>3i8t_A Galectin-4; S-type lectin, carbohydrate binding, molecular recognition, sugar binding protein; HET: LBT; 2.10A {Mus musculus} PDB: 2dyc_A
Probab=22.67 E-value=2.2e+02 Score=21.67 Aligned_cols=22 Identities=14% Similarity=-0.025 Sum_probs=18.7
Q ss_pred EEEEEeCCCCCCCCEEEEccCC
Q psy11462 76 IVHIKIKPGLPEHTVFKFSKEP 97 (237)
Q Consensus 76 ~l~V~Ip~G~~~G~~i~~~g~G 97 (237)
...-.||.|++.|+.|++.|.-
T Consensus 30 Py~~~ipggL~~G~~I~I~G~v 51 (164)
T 3i8t_A 30 PYKRPIPGGLSVGMSVYIQGMA 51 (164)
T ss_dssp SEEEECTTCCCTTCEEEEEEEE
T ss_pred CeeeeCCCCCCCCCEEEEEEEE
Confidence 4567889999999999999864
No 86
>2yro_A Galectin-8; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.53 E-value=1.5e+02 Score=22.46 Aligned_cols=40 Identities=3% Similarity=0.002 Sum_probs=27.0
Q ss_pred EEEEEeCCCCCCCCEEEEccCCCCCC---------CC-ccEEEEEEecCC
Q psy11462 76 IVHIKIKPGLPEHTVFKFSKEPLEYS---------TS-SEVIVITKDKPH 115 (237)
Q Consensus 76 ~l~V~Ip~G~~~G~~i~~~g~G~~~~---------~~-GDl~v~i~v~~~ 115 (237)
.....||.|+..|+.|++.|.-.... .. +|+.++++...+
T Consensus 18 Pf~~~ip~gl~~G~~i~I~G~v~~~~~rF~Inl~~g~~~dialHfnpRf~ 67 (155)
T 2yro_A 18 PFAARLNTPMGPGRTVVVKGEVNANAKSFNVDLLAGKSKDIALHLNPRLN 67 (155)
T ss_dssp SEEEECSSCCCTTCEEEEEEEECTTCCCEEEEEEETTTTEEEEEEECCSS
T ss_pred CEeeecCCCCccCCEEEEEEEECCCCCEEEEEEecCCCCCEEEEEEEEcC
Confidence 45678999999999999998643322 11 466666666544
No 87
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} SCOP: b.29.1.3 PDB: 1bkz_A 2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Probab=21.34 E-value=1.5e+02 Score=21.79 Aligned_cols=43 Identities=9% Similarity=0.079 Sum_probs=29.6
Q ss_pred EEEeCCccccCCcEEEEcCCCCCCCCC--------CCCCccEEEEEEEECCC
Q psy11462 153 HIPITDLTTCNQSMKVIKSEGMPHVEE--------PHLRGDLFIHLSIDYPK 196 (237)
Q Consensus 153 ~i~ip~~~~~~g~~~~i~g~G~p~~~~--------~~~rGDl~V~~~V~~P~ 196 (237)
.-.||.+ .++|+.+.|.|.=.+..++ .....|+.+||++.|.+
T Consensus 9 ~~~i~~g-l~~G~~i~I~G~v~~~a~rF~Inl~~g~~~~~dialHfnpRf~~ 59 (138)
T 3zxf_A 9 KSSLPEG-IRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDT 59 (138)
T ss_dssp EEECTTC-CCSSEEEEEEEEECTTCCBEEEEEESSSSTTCCEEEEEEEETTT
T ss_pred EeecCCC-CCCCCEEEEEEEECCCCCEEEEEeeeCCCCCCCEEEEEEEEcCC
Confidence 4456777 8899999998753332221 12357999999999975
No 88
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=20.78 E-value=44 Score=23.13 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhH-------HHHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILD-------SKLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 234 (237)
.++.+|...|+..+...........+.|. ..++.||.|
T Consensus 31 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 75 (96)
T 3nar_A 31 KKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGD 75 (96)
T ss_dssp SSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchh
Confidence 58999999999998876654433333333 346788865
No 89
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=20.04 E-value=47 Score=25.06 Aligned_cols=38 Identities=8% Similarity=0.124 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcchhhhHH-------HHHhhhcC
Q psy11462 197 FLSPDLRKTLSTLLDEDKGKNNTTRQILDS-------KLKSKAGN 234 (237)
Q Consensus 197 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 234 (237)
.++.+|...|+..+....+......+.+.. .++.||.|
T Consensus 99 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 143 (151)
T 3d1n_I 99 SFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSN 143 (151)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHH
Confidence 589999999999988766544334444544 45889865
Done!