RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11462
(237 letters)
>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and
HSP40. The C-terminal region of the DnaJ/Hsp40 protein
mediates oligomerization and binding to denatured
polypeptide substrate. DnaJ/Hsp40 is a widely conserved
heat-shock protein. It prevents the aggregation of
unfolded substrate and forms a ternary complex with both
substrate and DnaK/Hsp70; the N-terminal J-domain of
DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70.
Length = 158
Score = 119 bits (302), Expect = 3e-34
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 36 VHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSK 95
+ + ++LEE Y G K + +P + + K + +KI G+ + +
Sbjct: 4 RYDLELTLEEAYFGKEKEIKIPRKVT--------RVREKKTLTVKIPAGVDDGQRLRLRG 55
Query: 96 E---PLEYSTSSEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRI- 151
E ++ V+ + KPH VF R+G DL+ + +SL EAL G V TL ++
Sbjct: 56 EGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLYCEVPISLTEALLGGEIEVPTLGGKVK 115
Query: 152 LHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFL 198
L IP T ++ +K +GMP + RGDL++ + +++PK L
Sbjct: 116 LKIP---PGTQPGTVLRLKGKGMPRL-RGGGRGDLYVEVKVEFPKKL 158
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 94.9 bits (236), Expect = 1e-22
Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 11/168 (6%)
Query: 70 IINTSKIVHIKIKPGLPEHTVFKFSKEPLEYST--SSEVIVITKDKPHDVFWREGADLHM 127
+ T KI+ + I G+P F E E V+ I +KPHD F REG DL +
Sbjct: 219 VKKTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFI 278
Query: 128 KKNVSLKEALTGFSFTVTTLDDRILHI--PITDLTTCNQSMKVIKSEGMPHVEEPHLRGD 185
K +SL EALTGF F +T LD R L + P ++ +KVI +EGMP + P +G+
Sbjct: 279 TKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVK-PGDIKVINNEGMPTYKSPFKKGN 337
Query: 186 LFIHLSIDYP--KFLSPDLRKTLSTLL----DEDKGKNNTTRQILDSK 227
L++ + +P + + + ++ L +L +E K +T +++ ++
Sbjct: 338 LYVTFEVIFPVDRKFTNEEKEILKSLFPQNPEEKKDLEDTEIEVVTAQ 385
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 93.8 bits (234), Expect = 1e-22
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 11/175 (6%)
Query: 62 DPCSV--QLNIINTSKIVHIKIKPGLPEHTVFKFSKEPLEYSTSSE---VIVITKDKPHD 116
DPC + K + + I G+ + + S E + V KPH
Sbjct: 198 DPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHP 257
Query: 117 VFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRI-LHIPITDLTTCNQSMKVIKSEGMP 175
+F R+G DL+ + +S EA G V TLD R+ L IP T + ++ +GMP
Sbjct: 258 IFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPA---GTQTGEVFRLRGKGMP 314
Query: 176 HVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLDEDKGKNNTTRQILDSKLKS 230
+ RGDL++ + ++ PK LS + ++ L + D KLK+
Sbjct: 315 KL-RSGGRGDLYVRVKVETPKNLSDEQKELLEEFAKSLGEGPEQSPGFFD-KLKN 367
>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain. This family consists of
the C terminal region form the DnaJ protein. Although
the function of this region is unknown, it is always
found associated with pfam00226 and pfam00684. DnaJ is a
chaperone associated with the Hsp70 heat-shock system
involved in protein folding and renaturation after
stress.
Length = 81
Score = 80.3 bits (199), Expect = 7e-20
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 124 DLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHVEEPHLR 183
DL++ +SLKEAL G + V TLD R + I I T ++ IK +GMP + + R
Sbjct: 1 DLYVTLPISLKEALLGGTVEVPTLDGRKVKIKIPAGTQPGDKLR-IKGKGMPINKGGNGR 59
Query: 184 GDLFIHLSIDYPKFLSPDLRK 204
GDL + L++ PK LS + ++
Sbjct: 60 GDLIVTLNVKIPKKLSSEQKE 80
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included by
this family. Eukaryotic (mitochondrial and chloroplast)
forms are not included in the scope of this family.
Length = 354
Score = 73.4 bits (181), Expect = 3e-15
Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 8/147 (5%)
Query: 71 INTSKIVHIKIKPGLPEHTVFKFSKE--PLEYSTSS-EVIVITKDKPHDVFWREGADLHM 127
+ K + +KI G+ + S + E + ++ V+ + KPH +F R+G DL++
Sbjct: 212 VKERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYI 271
Query: 128 KKNVSLKEALTGFSFTVTTLD-DRILHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDL 186
+ +S +A+ G V TLD D L IP T + ++ +K +G+P + RGDL
Sbjct: 272 EVPISFTQAILGGEIEVPTLDGDVKLKIPA---GTQSGTVFRLKGKGVPRLRGNG-RGDL 327
Query: 187 FIHLSIDYPKFLSPDLRKTLSTLLDED 213
+ + ++ PK LS + ++ L L +
Sbjct: 328 LVTVKVETPKNLSKEQKELLEELAEAS 354
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 61.6 bits (150), Expect = 4e-11
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 113 KPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSE 172
+PHDVF R+G DLH +V + +A G + TV + D I I T + ++
Sbjct: 253 QPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVI-TLRGR 311
Query: 173 GMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTL 209
GMPH+ RGDL H+ + P L + + L L
Sbjct: 312 GMPHLRS-GGRGDLHAHVEVVVPTRLDHEDIELLREL 347
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 61.0 bits (148), Expect = 6e-11
Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 8/150 (5%)
Query: 62 DPCSV--QLNIINTSKIVHIKIKPGLPEHTVFKFSKEP---LEYSTSSEVIVITKDKPHD 116
PCS ++ +K + +KI G+ + + S E ++ V+ K KPH
Sbjct: 204 KPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHK 263
Query: 117 VFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPH 176
+F REGA+L+ +K +S +A G + V T+ D + + I T + ++ K GMP
Sbjct: 264 IFRREGANLYYEKPISFVQAALGDTVDVPTI-DGPVELKIPAGTQSGTTFRL-KGHGMPS 321
Query: 177 VEEPHLRGDLFIHLSIDYPKFLSPDLRKTL 206
+ +G+L++ + + PK LSP ++ L
Sbjct: 322 LRWSG-KGNLYVKVKVVVPKKLSPKQKELL 350
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 59.6 bits (144), Expect = 2e-10
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 75 KIVHIKIKPGLPEHTVFKFSKE----PLEYSTSSEVIVITKDKPHDVFWREGADLHMKKN 130
+ ++IKI PG+ + K S E P ++ V+T K H++F R+G DL + +
Sbjct: 219 RTINIKIPPGVETGSRLKVSGEGEAGP-NGGPHGDLYVVTHIKKHELFERQGNDLILVRK 277
Query: 131 VSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHL 190
+SL +A+ G V T+D + + I + T Q + +K GMP++ + +GD + +
Sbjct: 278 ISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFR-LKGHGMPYLGA-YGKGDQHVIV 335
Query: 191 SIDYPKFLSPDLRKTLSTLLDE 212
I+ PK ++ R+ + E
Sbjct: 336 KIEIPKKITRRQRELIEEFARE 357
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 56.4 bits (136), Expect = 2e-09
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 8/174 (4%)
Query: 62 DPCSV--QLNIINTSKIVHIKIKPGLPEHTVFK---FSKEPLEYSTSSEVIVITKDKPHD 116
DPCSV I + VH+ I G+ K + + + ++ V +PH
Sbjct: 212 DPCSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHP 271
Query: 117 VFWREGADLHMKKNVSLKEALTGFSFTVTTL-DDRILHIPITDLTTCNQSMKVIKSEGMP 175
VF R G DL ++ + +A G + TL + + I + +KV + +G P
Sbjct: 272 VFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGTILKV-RGQGFP 330
Query: 176 HVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLDEDKGKNNTTRQILDSKLK 229
+V RGDL + +S++ P+ LS + ++ L +K +N ++ K+K
Sbjct: 331 NVHG-KGRGDLLVRISVETPQNLSEEQKELLRQFAATEKAENFPKKRSFLDKIK 383
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 54.4 bits (131), Expect = 1e-08
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 108 VITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMK 167
+I K KPH +F R G +L++ N+++ EA+ G V LD + + I T ++
Sbjct: 260 IIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKIR 319
Query: 168 VIKSEGMPHVEEPHLRGDLFIHLSIDYPKF 197
V +GMP ++ GDL + + ID PK
Sbjct: 320 V-PGKGMPRLKGSG-YGDLVVRVHIDVPKI 347
Score = 27.8 bits (62), Expect = 4.9
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 14/57 (24%)
Query: 10 RKRAILRNLQGEKGSKQDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSV 66
R++ R ++GE DI TV +SLEE Y G +++ V PC
Sbjct: 119 RRKTYQRPVKGE-----DI-------YQTVEISLEEAYTG--TTVSLEVPRYVPCEA 161
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 54.0 bits (131), Expect = 1e-08
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 113 KPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRI-LHIPI-TDLTTCNQSMKV-- 168
K H +F R+G DL+ + +S A G V TLD R+ L IP T Q+ K+
Sbjct: 252 KEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGT------QTGKLFR 305
Query: 169 IKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTL--LDEDKGKNN 218
++ +G+ V RGDL+ + ++ P L+ ++ L E K++
Sbjct: 306 LRGKGVKSVRS-GARGDLYCQVVVETPVNLTKRQKELLEEFEESFESGEKHS 356
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 49.4 bits (118), Expect = 5e-07
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 107 IVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDR-ILHIPITDLTTCNQS 165
IVI K KPH +F REG +++++ ++ +A G + TLD + IP T +
Sbjct: 264 IVI-KVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIP---EGTQTGT 319
Query: 166 MKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLS 199
++ +G+PH+ RGD + + I+ PK L+
Sbjct: 320 KFRLRGKGIPHLRG-RGRGDQIVKVYIEVPKKLT 352
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 49.4 bits (118), Expect = 5e-07
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 114 PHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKV--IKS 171
PH F R+G D+++ K++S +A G V T+D + + ++ Q V +K
Sbjct: 263 PHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKY----EVPAGTQPGTVFRLKG 318
Query: 172 EGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLD 211
+G+P V RG+ ++ + +D PK L+ ++ L+ ++
Sbjct: 319 KGVPRVNS-TGRGNQYVTVIVDIPKKLNSKQKEALTMFME 357
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 47.8 bits (114), Expect = 2e-06
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 13/161 (8%)
Query: 74 SKIVHIKIKPGLPEHTVFKFSKEPLEY---STSSEVIVITKDKPHDVFWREGADLHMKKN 130
SK V +KI G+ + + E ++ V +PH+ F R+G D+H K
Sbjct: 212 SKTVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVP 271
Query: 131 VSLKEALTGFSFTVTTLD-DRILHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIH 189
+S +A G V TL+ +R L IP T + K +G+P + RGD I
Sbjct: 272 ISFVQAALGAQIEVPTLEGERELKIP---KGTQPGDIFRFKGKGIPSLRGGG-RGDQIIE 327
Query: 190 LSIDYPKFLSP---DLRKTLSTLLDEDKGKNNTTRQILDSK 227
+ + P L+ +L + L E + N R + SK
Sbjct: 328 VEVKVPTRLTKKQEELLTEFARL--ESEKIGNKLRNLFKSK 366
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 47.4 bits (113), Expect = 2e-06
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 14/114 (12%)
Query: 106 VIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPIT-DLTTCNQ 164
VI + DK +F R+G DL + + +S +A G V TLDD P+T D+ Q
Sbjct: 250 VITVEDDK---IFQRQGQDLVVTQEISFVQAALGDRIEVPTLDD-----PVTLDIPKGTQ 301
Query: 165 SMKV--IKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLS--TLLDEDK 214
S +V ++ +G+P++ +GDL + +S+ P L+ + L L+E+K
Sbjct: 302 SGEVFRLRGKGLPYLGSSQ-KGDLLVEVSVVTPTKLTKRQEELLREFEALEEEK 354
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 46.8 bits (111), Expect = 3e-06
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 113 KPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLD-DRILHIPITDLTTCNQSMKVIKS 171
+PH RE L + + +A G TV TLD +++ + T + + ++
Sbjct: 252 EPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKP---GTQHGDLHRLRG 308
Query: 172 EGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTL 206
+GMP ++ GDL + I PK LSP+ R+ L
Sbjct: 309 QGMPRLQG-AGTGDLIVEYEIAVPKQLSPEAREAL 342
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 46.5 bits (110), Expect = 4e-06
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 113 KPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSE 172
KPHD++ +GA+LH K +S A G V ++ +++ I T ++ ++S+
Sbjct: 255 KPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLR-LRSK 313
Query: 173 GMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLDE 212
GM + +RGD+ H+ ++ PK LS R+ L E
Sbjct: 314 GMSKMRST-IRGDMLTHIHVEVPKNLSKRQRELLEEFKKE 352
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 46.1 bits (109), Expect = 5e-06
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 113 KPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSE 172
KPH +F R G DL+ +S +A G + T+ + + I I T N +IK+E
Sbjct: 256 KPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTE-NDEQIIIKNE 314
Query: 173 GMP--HVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLDEDK 214
GMP H E+ G+L + + I PK L+ + K L L E K
Sbjct: 315 GMPILHTEK---FGNLILIIKIKTPKNLNSNAIKLLENLSKELK 355
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 46.3 bits (110), Expect = 5e-06
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 105 EVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRI-LHIPITDLTTCN 163
++IV+ ++KPH++F R G D+ VS + + G V TLD + L IP T
Sbjct: 268 DLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPA---GTQP 324
Query: 164 QSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTL 209
++M I +G+ H+ RGD ++ +++ PK +S ++ L L
Sbjct: 325 ETMLRIPGKGIGHLRGSG-RGDQYVRVNVFVPKEVSHQDKELLKEL 369
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 44.2 bits (104), Expect = 2e-05
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 41 VSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKEPLEY 100
++LEE YRG K++ V + + ++I PG+ E V + +
Sbjct: 138 LTLEEAYRGGEKVVEVAGER----------------LSVRIPPGVREGQVIRL---AGKG 178
Query: 101 STSSEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLT 160
++ ++ + PH VF EG DL+ +V A+ G V TLD + + I T
Sbjct: 179 RQGGDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPV-EVTIPPRT 237
Query: 161 TCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPD---LRKTLSTLL 210
+ ++ +K +G P P RGD + + I P +P+ L K L+ L
Sbjct: 238 QAGRKLR-LKGKGWP--RGPAGRGDQYAEVRITIPTRPTPEEERLYKQLAELY 287
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 44.1 bits (104), Expect = 3e-05
Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 8/129 (6%)
Query: 105 EVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQ 164
+++V+ +++PH R+ DL +S+ A G + V T+D + + I T Q
Sbjct: 260 DLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKA-KVKIEAGT---Q 315
Query: 165 SMKVI--KSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLDEDKGKNNTT-R 221
KV+ +++G+P V + GDL +++S+ P+ LS + ++TL + + D K T+ +
Sbjct: 316 PGKVLRLRNKGLPSVNG-YGTGDLLVNVSVYIPETLSKEEKQTLEKMENSDNFKPTTSIK 374
Query: 222 QILDSKLKS 230
+ + K KS
Sbjct: 375 EKIFKKFKS 383
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 43.4 bits (103), Expect = 4e-05
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 17/146 (11%)
Query: 73 TSKIVHIKIKPGLPEHTVFKFSKEP---LEYSTSSEVIVITKDKPHDVFWREGADLHMKK 129
+K + I I G+ T + S E L ++ V K F R+G ++ +
Sbjct: 214 VTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEI 273
Query: 130 NVSLKEALTGFSFTVTTLDDRI-LHIPI-----TDLTTCNQSMKVIKSEGMPHVEEPHLR 183
+S +A+ G + V T+D + L IP T LT N+ G+P + P R
Sbjct: 274 KISYLQAILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENK--------GVPRLGNPVAR 325
Query: 184 GDLFIHLSIDYPKFLSPDLRKTLSTL 209
GD I + + P +S + R+ L L
Sbjct: 326 GDHLITVKVKIPTRISDEERELLEKL 351
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 42.9 bits (101), Expect = 6e-05
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 105 EVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPIT-DLTTCN 163
++ V+ PH VF R G +L + V+ EA G V TL P+T L
Sbjct: 268 DLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGG----PPVTVKLPPGT 323
Query: 164 QSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTL 206
+ +V++ G V + RGDL + + + PK LS R+ L
Sbjct: 324 PNGRVLRVRGKGAVRKDGTRGDLLVTVEVAVPKDLSGKAREAL 366
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 42.9 bits (101), Expect = 7e-05
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 105 EVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQ 164
++ VI + +P F R G+DL + +A+ G + V + + I T
Sbjct: 258 DLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQPET 317
Query: 165 SMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTL 209
++ K +G+P++ RGDL +++ ++ PK LS + RK L L
Sbjct: 318 VFRL-KGKGLPNMRYGR-RGDLIVNVHVEIPKRLSREERKLLKEL 360
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 40.9 bits (96), Expect = 3e-04
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 103 SSEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRI-LHIPITDLTT 161
S ++ V +P VF R+G DL + VS E G + +V TLD + + +P T
Sbjct: 273 SGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAG--TA 330
Query: 162 CNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLDEDK 214
+ ++V + G+P GDL + + + P L + L + ++
Sbjct: 331 DGRILRV-RGRGVPKRSGGA--GDLLVTVKVAVPPNLDGAAAEALEAYAEAER 380
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 38.7 bits (90), Expect = 0.001
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 103 SSEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRI-LHIPITDLTT 161
S ++ ++ K HD F R G D+ + +S +A G V TL ++ ++IP T
Sbjct: 245 SGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPP---GT 301
Query: 162 CNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLDEDKGKN 217
S+ +K +GMP + H +GD + + + P L+ + ++ L + GKN
Sbjct: 302 QTHSVFRLKDKGMPRLHG-HGKGDQLVKVIVKTPTKLTQEQKELLREFDELSNGKN 356
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 38.2 bits (89), Expect = 0.002
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 108 VITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRI-LHIPITDLTTCNQSM 166
V+ + +PH+ F R+G D++ + ++ +A G V TL ++ L IP T +
Sbjct: 252 VVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPA---GTQTGTQ 308
Query: 167 KVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLS 199
+K +G+P+V +GD ++ + + P L+
Sbjct: 309 FRLKGKGVPNVRGYG-QGDQYVVVRVVTPTKLT 340
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 37.0 bits (85), Expect = 0.007
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 8/164 (4%)
Query: 48 RGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHT--VFKFSKEPLEYSTSSE 105
+G K++ P Q C + I+ +I I I G+ + V K E +
Sbjct: 185 QGKGKIIKTPCQ---ACKGKTYILKDEEIDAI-IPEGIDDQNRMVLKNKGNEYEKGKRGD 240
Query: 106 VIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQS 165
+ + + K + F REG DL ++ V G + V +L L + I Q+
Sbjct: 241 LYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQT 300
Query: 166 MKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTL 209
++EG+ H E + RG L + L + YPK L+ + ++ L L
Sbjct: 301 F-AFRNEGVKHPESSY-RGSLIVELQVIYPKSLNKEQQELLEKL 342
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 34.9 bits (80), Expect = 0.027
Identities = 24/111 (21%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 106 VIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQS 165
V++ + P+ R DL++ + ++ +A G + ++ ++ I + T +
Sbjct: 255 VVLRVNNDPN--IQRINDDLYVDQKINFPQAALGGEIEIKLFREK-YNLKIPEGTQPGEV 311
Query: 166 MKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLDEDKGK 216
+K IK GMPH+ H GDL + ++++ PK L+ ++ + D +
Sbjct: 312 LK-IKGAGMPHLNG-HGSGDLLVRINVEVPKRLTSKQKELIREFFDIKENH 360
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 34.2 bits (78), Expect = 0.042
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 8/140 (5%)
Query: 75 KIVHIKIKPGLPEHTVFKFSKE---PLEYSTSSEVIVITKDKPHDVF-WREGADLHMKKN 130
K + + I G+ + K S++ L + ++I+ K VF D+ M N
Sbjct: 222 KKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYN 281
Query: 131 VSLKEALTGFSFTVTTLDDRI-LHIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIH 189
+S +A+ G + TLD I +P + N+ + I ++G+ RGDL I
Sbjct: 282 ISYLDAILGNEIIIKTLDGDIKYKLPKS--INSNELII-INNKGLYKSINKDKRGDLIIK 338
Query: 190 LSIDYPKFLSPDLRKTLSTL 209
++I PK LS ++ + +
Sbjct: 339 VNIVVPKNLSKKEKELIEQI 358
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 34.2 bits (78), Expect = 0.046
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 105 EVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRI-LHIPITDLTTCN 163
++ V+ KPH+ F R+G D++ + ++ + G V TL+ ++ L IP T +
Sbjct: 244 DLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGTS 303
Query: 164 QSMKVIKSEGMPHVEEPHLR--GDLFIHLSIDYPKFLS 199
+ + +G+P+V H R GD + + + PK L+
Sbjct: 304 FRL---RGKGVPNV---HGRGQGDQHVQVRVVTPKNLT 335
>gnl|CDD|237739 PRK14510, PRK14510, putative bifunctional
4-alpha-glucanotransferase/glycogen debranching enzyme;
Provisional.
Length = 1221
Score = 33.3 bits (76), Expect = 0.12
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 10/101 (9%)
Query: 73 TSKIVHIKIKPGLPEHTVFKFSKE-------PLEYSTSSEVIVITKDKPHDVFWREGADL 125
S + + G+ + V +F + P Y+ + V T D P W EG DL
Sbjct: 1081 PSGVRELLAILGILSYRVLQFERLGEGNFLPPPLYNALAAAYVGTHDLPTLAGWWEGVDL 1140
Query: 126 HMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSM 166
K+ + EA+ + ++ I + DL N M
Sbjct: 1141 SEKEQLGAAEAVIEM---LARSPAILVIIQLQDLLGSNVRM 1178
>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein
Serine/Threonine Kinase, Group II p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group II, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group II PAKs, also called non-conventional PAKs,
include PAK4, PAK5, and PAK6. Group II PAKs contain PBD
(p21-binding domain) and catalytic domains, but lack
other motifs found in group I PAKs, such as an AID
(autoinhibitory domain) and SH3 binding sites. Since
group II PAKs do not contain an obvious AID, they may be
regulated differently from group I PAKs. While group I
PAKs interact with the SH3 containing proteins Nck, Grb2
and PIX, no such binding has been demonstrated for group
II PAKs. Some known substrates of group II PAKs are also
substrates of group I PAKs such as Raf, BAD, LIMK and
GEFH1. Unique group II substrates include MARK/Par-1 and
PDZ-RhoGEF. Group II PAKs play important roles in
filopodia formation, neuron extension, cytoskeletal
organization, and cell survival.
Length = 285
Score = 29.3 bits (66), Expect = 1.8
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 15/71 (21%)
Query: 164 QSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLDEDKGKNNTTRQI 223
Q+MK I+ P ++ H +SP LR L +L D + T ++
Sbjct: 222 QAMKRIRDNLPPKLKNLHK---------------VSPRLRSFLDRMLVRDPAQRATAAEL 266
Query: 224 LDSKLKSKAGN 234
L+ +KAG
Sbjct: 267 LNHPFLAKAGP 277
>gnl|CDD|184746 PRK14562, PRK14562, haloacid dehalogenase superfamily protein;
Provisional.
Length = 204
Score = 28.3 bits (64), Expect = 2.5
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 190 LSIDYPKFLSPDLRKT---LSTLLDEDKGK--NNTTRQILDSKLK 229
+++DYP ++P LR+ +LL+ +G N + L+ LK
Sbjct: 156 MTLDYPDAITPGLRRKQDVARSLLERTRGDLTNAILNRKLEEALK 200
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 28.6 bits (64), Expect = 2.6
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 114 PHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEG 173
PH +F G DL + ++ EA G TV TL + IL + I + Q ++ +K +G
Sbjct: 200 PHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESIL-LTIPPGSQAGQRLR-VKGKG 257
Query: 174 MPHVEEPHLRGDLFIHLSIDYP 195
+ V + GDL+ L I P
Sbjct: 258 L--VSKKQ-TGDLYAVLKIVMP 276
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 27.7 bits (62), Expect = 5.0
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 108 VITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLD-DRILHIPITDLTTCNQSM 166
V+ + +P F R+G+ ++ +S +A G + V T+ D L IP T +
Sbjct: 255 VVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAG--TQTGKKF 312
Query: 167 KVIKSEGMPHVEEPHLR----GDLFIHLSIDYPKFLSPDLRKTL 206
+ ++ +G P LR GD + ++I P L+ ++ L
Sbjct: 313 R-LRGKGA-----PKLRGGGNGDQHVTVNIVTPTKLNDAQKEAL 350
>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine
Kinase, p21-activated kinase. Serine/threonine kinases
(STKs), p21-activated kinase (PAK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PAK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PAKs are Rho
family GTPase-regulated kinases that serve as important
mediators in the function of Cdc42 (cell division cycle
42) and Rac. PAKs are implicated in the regulation of
many cellular processes including growth factor
receptor-mediated proliferation, cell polarity, cell
motility, cell death and survival, and actin
cytoskeleton organization. PAK deregulation is
associated with tumor development. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs contain a PBD (p21-binding domain)
overlapping with an AID (autoinhibitory domain), a
C-terminal catalytic domain, SH3 binding sites and a
non-classical SH3 binding site for PIX (PAK-interacting
exchange factor). Group II PAKs contain a PBD and a
catalytic domain, but lack other motifs found in group I
PAKs. Since group II PAKs do not contain an obvious AID,
they may be regulated differently from group I PAKs.
Group I PAKs interact with the SH3 containing proteins
Nck, Grb2 and PIX; no such binding has been demonstrated
for group II PAKs.
Length = 286
Score = 27.2 bits (61), Expect = 7.2
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 175 PHVEEPHLRGDLFIHLS----IDYPKFLSPDLRKTLSTLLDEDKGKNNTTRQILDSKLKS 230
P++ EP LR I + P+ SP+ + L+ L +D K + ++L
Sbjct: 215 PYLREPPLRALFLITTKGIPPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQHPFLK 274
Query: 231 KAGN 234
KA
Sbjct: 275 KACP 278
>gnl|CDD|238959 cd02001, TPP_ComE_PpyrDC, Thiamine pyrophosphate (TPP) family, ComE
and PpyrDC subfamily, TPP-binding module; composed of
proteins similar to sulfopyruvate decarboxylase beta
subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr
decarboxylase). Methanococcus jannaschii sulfopyruvate
decarboxylase (ComDE) is a dodecamer of six alpha (D)
subunits and six (E) beta subunits which, catalyzes the
decarboxylation of sulfopyruvic acid to
sulfoacetaldehyde in the coenzyme M pathway. Ppyr
decarboxylase is a homotrimeric enzyme which functions
in the biosynthesis of C-P compounds such as bialaphos
tripeptide in Streptomyces hygroscopicus. Ppyr
decarboxylase and ComDE require TPP and divalent metal
cation cofactors.
Length = 157
Score = 26.7 bits (59), Expect = 7.7
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 31 SSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSK--IVHIKIKPG 84
+ Q + V+LE C L+ S ++ T+ ++H I PG
Sbjct: 102 TGGQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLATTGPTLLHAPIAPG 157
>gnl|CDD|223947 COG1015, DeoB, Phosphopentomutase [Carbohydrate transport and
metabolism].
Length = 397
Score = 26.8 bits (60), Expect = 9.8
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 28 ITLSSNQQV-----HTVVVSLEELYRGC 50
I +S V H V LEELY C
Sbjct: 154 IVYTSADSVFQIAAHEEVFGLEELYELC 181
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.382
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,649,023
Number of extensions: 1082666
Number of successful extensions: 924
Number of sequences better than 10.0: 1
Number of HSP's gapped: 894
Number of HSP's successfully gapped: 48
Length of query: 237
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 143
Effective length of database: 6,768,326
Effective search space: 967870618
Effective search space used: 967870618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.8 bits)