RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11462
(237 letters)
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment);
malaria, structural genomics, structural genomics
consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Length = 180
Score = 160 bits (408), Expect = 4e-50
Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 8/178 (4%)
Query: 37 HTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKE 96
++V+LEELY G K + V + V N IV ++IKPG + T +S E
Sbjct: 8 VPLLVTLEELYLGKRKKIKVTRKRFIEHKV----RNEENIVEVEIKPGWKDGTKLTYSGE 63
Query: 97 ---PLEYSTSSEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILH 153
++ ++++I + K H F R+ L MK + L ALTGF+ VTTLD+R L
Sbjct: 64 GDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQ 123
Query: 154 IPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLD 211
IPI ++ ++ K++ +EGMP +P +GDL + I +PK L+P+ +K + LD
Sbjct: 124 IPIKEIVN-PKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEALD 180
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens}
PDB: 3agy_A 3agz_A 2qld_A
Length = 181
Score = 160 bits (406), Expect = 8e-50
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 5/177 (2%)
Query: 36 VHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSK 95
H + VSLEE+Y GC K + + + ++P I N KI+ I++K G E T F K
Sbjct: 6 THDLRVSLEEIYSGCTKKMKISHKRLNPDGKS--IRNEDKILTIEVKKGWKEGTKITFPK 63
Query: 96 E--PLEYSTSSEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILH 153
E + ++++ + KDKPH++F R+G+D+ +SL+EAL G + V TLD R +
Sbjct: 64 EGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIP 123
Query: 154 IPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLL 210
+ D+ + + EG+P + P RGDL I + +P+ + R L +L
Sbjct: 124 VVFKDVIRPGM-RRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 179
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A
{Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB:
2b26_A
Length = 170
Score = 155 bits (395), Expect = 3e-48
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 11/174 (6%)
Query: 36 VHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSK 95
+ VSLE+L+ G K + + + + I++KPG T +
Sbjct: 4 QVNLPVSLEDLFVGKKKSFKIG------RKGP-HGASEKTQIDIQLKPGWKAGTKITYKN 56
Query: 96 E---PLEYSTSSEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRIL 152
+ + + + ++K H F R+G DL +S KE+L GFS T+ T+D R L
Sbjct: 57 QGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTL 116
Query: 153 HIPITDLTTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTL 206
+ +Q+ +GMP + P RG+L + +DYP L+ ++ +
Sbjct: 117 PLSRVQPVQPSQT-STYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAI 169
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5;
beta-strands, chaperone, heat shock, mitochondrion;
2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1
g.54.1.1
Length = 248
Score = 106 bits (267), Expect = 3e-28
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 4/140 (2%)
Query: 70 IINTSKIVHIKIKPGLPEHTVFKFSKE--PLEYSTSSEVIVITKDKPHDVFWREGADLHM 127
+ N KI+ + ++PG+ + F E +V+ I ++PH F R+G DL
Sbjct: 107 VENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVY 166
Query: 128 KKNVSLKEALTGFSFTVTTLDDRILHIPITD-LTTCNQSMKVIKSEGMPHVEEPHLRGDL 186
+ + L A+ G F + + L + I KVI+ +GMP + G+L
Sbjct: 167 EAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGG-YGNL 225
Query: 187 FIHLSIDYPKFLSPDLRKTL 206
I +I P+
Sbjct: 226 IIKFTIKDPENHFTSEENLK 245
Score = 35.3 bits (82), Expect = 0.010
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 36 VHTVVVSLEELYRGCVKLLTVPVQEI-DPCS 65
H + SLEELY+G L + Q + C
Sbjct: 15 KHEISASLEELYKGRTAKLALNKQILCKECE 45
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets,
chaperone; 2.07A {Saccharomyces cerevisiae}
Length = 121
Score = 98.5 bits (246), Expect = 1e-26
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 118 FWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPIT-DLTTCNQSMKVIKSEGMPH 176
F R+G DL + + L A+ G F + + L + I KVI+ +GMP
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 177 VEEPHLRGDLFIHLSIDYPK--FLSPDLRKTLSTLL 210
+ G+L I +I +P+ F S + K L +L
Sbjct: 62 PKYGG-YGNLIIKFTIKFPENHFTSEENLKKLEEIL 96
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 73.4 bits (181), Expect = 1e-15
Identities = 36/186 (19%), Positives = 69/186 (37%), Gaps = 16/186 (8%)
Query: 38 TVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFS--- 94
V V LEE + ++ + + + K +++KI G+ + +
Sbjct: 146 EVAVFLEETLAEQTRTISYNLPVYN-VFGMIESETP-KTLNVKIPAGVVDGQRIRLKGQG 203
Query: 95 KEPLEYSTSSEVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRI-LH 153
+ ++ ++ PH +F G +L + ++ EA G TV TL + I L
Sbjct: 204 TPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLT 263
Query: 154 IPITDLTTCNQSMKV--IKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLD 211
+P +Q+ + IK +G+ GDLF + I P R+ L
Sbjct: 264 VP-----PGSQAGQRLRIKGKGLVS---KTHTGDLFAVIKIVMPTKPDEKARELWQQLAA 315
Query: 212 EDKGKN 217
+ +
Sbjct: 316 AEASFD 321
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.30A {Klebsiella pneumoniae subsp}
Length = 109
Score = 55.6 bits (135), Expect = 2e-10
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 7/105 (6%)
Query: 114 PHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRI-LHIPITDLTTCNQSMKVIKSE 172
H +F G +L + ++ EA G TV TL + I L +P + Q +++ K +
Sbjct: 3 AHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPG--SQAGQRLRI-KGK 59
Query: 173 GMPHVEEPHLRGDLFIHLSIDYPKFLSPDLRKTLSTLLDEDKGKN 217
G+ GDLF + I P R+ L + +
Sbjct: 60 GLVS---KTHTGDLFAVIKIVMPTKPDEKARELWQQLAAAEASFD 101
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.001
Identities = 37/257 (14%), Positives = 73/257 (28%), Gaps = 80/257 (31%)
Query: 28 ITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKP---G 84
+ L + TV+ L++L T ++++ I +K KP
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 85 L--------PEH-TVFKFSKEPLEYSTSSEVIVITKDKPHDVFWREGADLHMKKNVSLKE 135
L + F S ++++ T+ K V A ++SL
Sbjct: 247 LLVLLNVQNAKAWNAFNL---------SCKILLTTRFK--QVTDFLSAA--TTTHISLDH 293
Query: 136 ALTGFSFTVTTLDD------RILHIPITDL------------------------------ 159
T D+ + L DL
Sbjct: 294 HSMTL-----TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 160 -TTCNQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPKFLSPDLR---KTLSTLLDEDKG 215
C++ +I+S + +E R +F LS+ +P LS + +
Sbjct: 349 HVNCDKLTTIIES-SLNVLEPAEYR-KMFDRLSV-FPP----SAHIPTILLSLIWFDV-- 399
Query: 216 KNNTTRQILDSKLKSKA 232
+ +++ KL +
Sbjct: 400 IKSDVMVVVN-KLHKYS 415
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.008
Identities = 30/203 (14%), Positives = 63/203 (31%), Gaps = 76/203 (37%)
Query: 13 AILRNLQGEKGSKQDITLSSNQQV--HTV-----------VVSLEEL-----YRGCVKLL 54
A +L+ KG + H++ V+S+E L YRG +
Sbjct: 1742 AAFEDLK-SKGLIPA-----DATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQV 1795
Query: 55 TVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKF-------SKEPLE---YSTSS 104
VP E+ + + IN ++ + + + +E Y+ +
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVA-----ASFSQEALQYVVERVGKRTGWLVEIVNYNVEN 1850
Query: 105 EVIVITKDKPHDVFWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQ 164
+ V D + + + +T L+ + + Q
Sbjct: 1851 QQYVAAGD---------------LRAL---DTVT------NVLN--FIKL---------Q 1875
Query: 165 SMKVIKSEGMPHVEEPHLRGDLF 187
+ +I+ + +EE + G LF
Sbjct: 1876 KIDIIELQKSLSLEE--VEGHLF 1896
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 104
Score = 26.0 bits (58), Expect = 5.5
Identities = 5/26 (19%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 41 VSLEELYRGCVKLLTVPVQEI-DPCS 65
++ + +G K TV + + + C+
Sbjct: 10 LTFNQAAKGVNKEFTVNIMDTCERCN 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.382
Gapped
Lambda K H
0.267 0.0514 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,468,814
Number of extensions: 202122
Number of successful extensions: 404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 31
Length of query: 237
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 146
Effective length of database: 4,160,982
Effective search space: 607503372
Effective search space used: 607503372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.9 bits)