RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11462
         (237 letters)



>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 90

 Score = 78.1 bits (192), Expect = 1e-19
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 118 FWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHV 177
           F R+G DL     +S KE+L GFS T+ T+D R L +        +Q       +GMP  
Sbjct: 2   FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQ-TSTYPGQGMPTP 60

Query: 178 EEPHLRGDLFIHLSIDYPKFLSPDLRKTL 206
           + P  RG+L +   +DYP  L+   ++ +
Sbjct: 61  KNPSQRGNLIVKYKVDYPISLNDAQKRAI 89


>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein
           mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 80

 Score = 71.1 bits (174), Expect = 5e-17
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 118 FWREGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPIT-DLTTCNQSMKVIKSEGMPH 176
           F R+G DL  +  + L  A+ G  F +  +    L + I           KVI+ +GMP 
Sbjct: 2   FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61

Query: 177 VEEPHLRGDLFIHLSIDYPK 196
            +     G+L I  +I  P+
Sbjct: 62  PKYGG-YGNLIIKFTIKDPE 80


>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 80

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 10/82 (12%)

Query: 37  HTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNIINTSKIVHIKIKPGLPEHTVFKFSKE 96
             + VSLE+L+ G  K   +  +     S           + I++KPG    T   +  +
Sbjct: 5   VNLPVSLEDLFVGKKKSFKIGRKGPHGAS-------EKTQIDIQLKPGWKAGTKITYKNQ 57

Query: 97  ---PLEYSTSSEVIVITKDKPH 115
                +      +  + ++K H
Sbjct: 58  GDYNPQTGRRKTLQFVIQEKSH 79


>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import
           protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 74

 Score = 28.5 bits (63), Expect = 0.17
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 120 REGADLHMKKNVSLKEALTGFSFTVTTLDDRILHIPITDLTTCNQSMKVIKSEGMPHVEE 179
           + G D+  + + SL+E   G +  +         I    +    +  + I  +G      
Sbjct: 2   QRGKDIKHEISASLEELYKGRTAKLALNR----KILEVHVEPGMKDGQRIVFKGEADQAP 57

Query: 180 PHLRGDLFIHLSI 192
             + GD+   +S 
Sbjct: 58  DVIPGDVVFIVSE 70


>d2ebfx2 c.150.1.2 (X:875-1093) Dermonecrotic toxin, ToxA
           {Pasteurella multocida [TaxId: 747]}
          Length = 219

 Score = 26.4 bits (58), Expect = 2.5
 Identities = 7/60 (11%), Positives = 14/60 (23%), Gaps = 2/60 (3%)

Query: 163 NQSMKVIKSEGMPHVEEPHLRGDLFIHLSIDYPK--FLSPDLRKTLSTLLDEDKGKNNTT 220
             ++      G+  +    L  D+       + +       L   L  L   D       
Sbjct: 51  LNNLTTFIDNGLTEIAISDLPYDIVQQEISQFLQGSNEWKTLDAMLFNLDKGDINGAFRK 110


>d2hq2a1 e.62.1.1 (A:1-337) Heme oxygenase ChuS {Escherichia coli
           O157:H7 [TaxId: 83334]}
          Length = 337

 Score = 25.5 bits (56), Expect = 5.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 48  RGCVKLLTVPVQEIDPCSVQLNIINTSKIVHI 79
           RGCV++ T  V+++ P    LNI N +  +H+
Sbjct: 247 RGCVQIFTGVVEKVVPMKGWLNIFNPTFTLHL 278


>d2j0pa1 e.62.1.1 (A:4-341) Hemin transport protein HemS {Yersinia
           enterocolitica [TaxId: 630]}
          Length = 338

 Score = 25.1 bits (55), Expect = 8.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 48  RGCVKLLTVPVQEIDPCSVQLNIINTSKIVHI 79
           RGCV++ T  ++++ P    +N+ N    +H+
Sbjct: 247 RGCVQIFTGMIEKVTPHQDWINVFNQRFTLHL 278


>d2i09a2 d.327.1.1 (A:108-226) Phosphopentomutase DeoB
          {Streptococcus mutans [TaxId: 1309]}
          Length = 119

 Score = 24.3 bits (53), Expect = 8.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 36 VHTVVVSLEELYRGC 50
           H  V+ L+ELYR C
Sbjct: 65 AHEDVIPLDELYRIC 79


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0672    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 847,062
Number of extensions: 39240
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 15
Length of query: 237
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 154
Effective length of database: 1,268,006
Effective search space: 195272924
Effective search space used: 195272924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.5 bits)