Query psy11469
Match_columns 267
No_of_seqs 229 out of 1639
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 19:15:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j0a_A TOLL-like receptor 5; m 100.0 3.6E-38 1.2E-42 318.1 6.9 233 1-258 549-792 (844)
2 2j67_A TOLL like receptor 10; 100.0 1.1E-31 3.8E-36 224.3 5.3 125 132-259 32-156 (178)
3 1fyx_A TOLL-like receptor 2; b 100.0 8.7E-32 3E-36 219.0 2.6 123 133-258 3-125 (149)
4 1t3g_A X-linked interleukin-1 100.0 1.7E-29 5.7E-34 207.6 5.7 119 135-257 2-132 (159)
5 2js7_A Myeloid differentiation 99.9 6.8E-29 2.3E-33 204.1 -2.6 105 132-238 13-118 (160)
6 3ub2_A TOLL/interleukin-1 rece 99.9 5.4E-28 1.8E-32 195.9 -2.7 109 133-247 8-116 (146)
7 3ozi_A L6TR; plant TIR domain, 99.8 6.4E-21 2.2E-25 161.0 4.7 100 135-239 35-136 (204)
8 3h16_A TIR protein; bacteria T 99.8 2.6E-21 8.9E-26 157.8 2.0 97 134-235 19-116 (154)
9 3jrn_A AT1G72930 protein; TIR 99.8 8.4E-21 2.9E-25 157.5 2.1 100 135-240 8-109 (176)
10 3rfe_A Platelet glycoprotein I 99.2 7.7E-12 2.6E-16 98.7 3.2 59 1-68 57-116 (130)
11 4g8a_A TOLL-like receptor 4; l 98.8 1.2E-09 4.2E-14 104.6 4.1 58 1-69 569-627 (635)
12 2v9t_B SLIT homolog 2 protein 98.7 6.4E-09 2.2E-13 88.2 3.7 61 1-72 154-215 (220)
13 2wfh_A SLIT homolog 2 protein 98.7 7.1E-09 2.4E-13 86.3 3.7 59 1-70 128-187 (193)
14 3zyj_A Leucine-rich repeat-con 98.6 3.8E-08 1.3E-12 91.5 4.7 61 1-70 281-342 (440)
15 1w8a_A SLIT protein; signaling 98.5 9E-08 3.1E-12 79.2 3.9 60 1-71 128-188 (192)
16 3zyi_A Leucine-rich repeat-con 98.4 1E-07 3.4E-12 88.9 3.3 61 1-70 292-353 (452)
17 2v70_A SLIT-2, SLIT homolog 2 98.4 1.7E-07 5.9E-12 79.3 3.8 59 1-70 155-214 (220)
18 1ziw_A TOLL-like receptor 3; i 98.1 2.7E-07 9.1E-12 90.0 -0.4 60 1-68 611-673 (680)
19 3vq2_A TLR4, TOLL-like recepto 98.1 9.2E-07 3.1E-11 84.9 2.8 58 1-68 547-605 (606)
20 3g39_A Variable lymphocyte rec 97.6 4E-05 1.4E-09 61.9 3.8 51 1-62 104-160 (170)
21 2id5_A Lingo-1, leucine rich r 97.6 3.7E-05 1.3E-09 71.6 4.0 57 1-68 322-383 (477)
22 1p9a_G Platelet glycoprotein I 97.5 5.3E-05 1.8E-09 66.5 3.9 26 1-26 197-222 (290)
23 2ifg_A High affinity nerve gro 97.4 9.9E-05 3.4E-09 65.8 3.6 43 1-48 105-147 (347)
24 2r9u_A Variable lymphocyte rec 97.3 0.00012 4.1E-09 59.4 3.7 26 1-26 107-133 (174)
25 2o6q_A Variable lymphocyte rec 97.3 0.00015 5E-09 62.6 4.1 54 1-64 207-261 (270)
26 3e6j_A Variable lymphocyte rec 97.3 0.00017 5.8E-09 60.9 4.3 47 1-47 161-212 (229)
27 2xot_A Amphoterin-induced prot 97.3 6.2E-05 2.1E-09 68.0 1.6 43 2-48 192-236 (361)
28 1eiw_A Hypothetical protein MT 97.1 8.1E-05 2.8E-09 56.7 0.5 74 135-235 4-77 (111)
29 3rfe_A Platelet glycoprotein I 97.1 0.0005 1.7E-08 53.4 4.4 41 90-136 1-43 (130)
30 3m19_A Variable lymphocyte rec 96.7 0.00093 3.2E-08 56.8 3.7 26 1-26 181-207 (251)
31 3a79_B TLR6, VLRB.59, TOLL-lik 96.7 0.00075 2.6E-08 64.2 3.3 49 1-60 499-554 (562)
32 3g39_A Variable lymphocyte rec 95.6 0.01 3.6E-07 47.4 4.3 42 89-136 1-42 (170)
33 2r9u_A Variable lymphocyte rec 95.3 0.018 6.1E-07 46.3 4.6 44 88-137 3-46 (174)
34 2v9t_B SLIT homolog 2 protein 95.1 0.019 6.6E-07 47.8 4.5 42 89-136 3-44 (220)
35 2wfh_A SLIT homolog 2 protein 94.9 0.022 7.4E-07 46.5 4.3 42 90-137 3-44 (193)
36 4ay9_X Follicle-stimulating ho 94.8 0.016 5.5E-07 51.6 3.5 40 91-136 2-42 (350)
37 1w8a_A SLIT protein; signaling 94.6 0.03 1E-06 45.5 4.4 41 90-136 1-41 (192)
38 2xot_A Amphoterin-induced prot 94.5 0.033 1.1E-06 49.8 4.7 43 88-136 9-51 (361)
39 2v70_A SLIT-2, SLIT homolog 2 94.5 0.034 1.2E-06 46.2 4.4 44 89-138 3-46 (220)
40 1ozn_A Reticulon 4 receptor; N 93.9 0.061 2.1E-06 46.0 4.9 44 90-136 1-44 (285)
41 3hyn_A Putative signal transdu 93.8 0.093 3.2E-06 43.0 5.5 60 171-234 59-118 (189)
42 2o6r_A Variable lymphocyte rec 92.5 0.12 4.1E-06 40.9 4.3 40 91-136 1-40 (177)
43 2id5_A Lingo-1, leucine rich r 92.4 0.11 3.8E-06 47.8 4.6 43 90-136 2-44 (477)
44 2o6s_A Variable lymphocyte rec 92.0 0.14 4.7E-06 41.6 4.3 40 91-136 1-40 (208)
45 2z66_A Variable lymphocyte rec 91.9 0.13 4.6E-06 44.2 4.3 40 91-136 1-40 (306)
46 3zyj_A Leucine-rich repeat-con 91.0 0.18 6.2E-06 46.0 4.3 45 88-136 32-76 (440)
47 4g8a_A TOLL-like receptor 4; l 90.8 0.19 6.6E-06 47.3 4.5 40 93-136 25-64 (635)
48 3zyi_A Leucine-rich repeat-con 90.6 0.21 7.1E-06 45.8 4.4 45 88-136 43-87 (452)
49 2f62_A Nucleoside 2-deoxyribos 90.4 1.1 3.8E-05 35.8 8.0 83 142-232 20-105 (161)
50 3rfs_A Internalin B, repeat mo 86.8 0.51 1.7E-05 40.0 3.9 25 1-25 207-232 (272)
51 2ft3_A Biglycan; proteoglycan, 86.5 0.6 2.1E-05 40.6 4.3 43 88-136 24-66 (332)
52 1xku_A Decorin; proteoglycan, 85.6 0.72 2.5E-05 40.0 4.3 43 88-136 22-64 (330)
53 2ifg_A High affinity nerve gro 84.4 0.57 2E-05 41.0 3.1 39 91-136 1-44 (347)
54 2xwt_C Thyrotropin receptor; s 84.3 0.63 2.2E-05 38.4 3.2 41 90-136 3-43 (239)
55 3ehd_A Uncharacterized conserv 84.3 2.4 8.2E-05 33.9 6.5 94 128-234 6-106 (162)
56 3t6q_A CD180 antigen; protein- 83.5 0.96 3.3E-05 42.6 4.5 43 90-136 3-45 (606)
57 3v47_A TOLL-like receptor 5B a 82.4 0.97 3.3E-05 40.9 3.9 40 90-136 3-42 (455)
58 3m19_A Variable lymphocyte rec 79.8 1.1 3.8E-05 37.3 3.1 43 90-136 3-47 (251)
59 3oja_B Anopheles plasmodium-re 79.6 0.39 1.3E-05 45.8 0.2 40 1-48 347-386 (597)
60 2o6q_A Variable lymphocyte rec 75.7 2.5 8.6E-05 35.5 4.2 40 93-136 10-49 (270)
61 3e6j_A Variable lymphocyte rec 72.6 3.1 0.00011 34.1 3.9 39 92-136 14-52 (229)
62 1s2d_A Purine trans deoxyribos 70.6 24 0.00082 28.0 8.6 96 127-235 8-120 (167)
63 1byr_A Protein (endonuclease); 69.2 9.1 0.00031 29.1 5.7 42 175-222 10-51 (155)
64 1ziw_A TOLL-like receptor 3; i 62.9 4.7 0.00016 38.5 3.4 31 106-136 7-37 (680)
65 2z62_A TOLL-like receptor 4, v 58.5 8.8 0.0003 32.0 4.0 31 106-136 10-40 (276)
66 2z63_A TOLL-like receptor 4, v 57.4 9.6 0.00033 35.2 4.5 38 95-136 3-40 (570)
67 3vq2_A TLR4, TOLL-like recepto 56.8 7.2 0.00025 36.5 3.5 38 95-136 7-44 (606)
68 1p9a_G Platelet glycoprotein I 54.8 12 0.0004 31.9 4.3 32 105-136 12-43 (290)
69 3j0a_A TOLL-like receptor 5; m 51.2 7.1 0.00024 38.7 2.5 31 105-136 6-36 (844)
70 2z80_A TOLL-like receptor 2, v 48.6 14 0.00047 32.1 3.7 41 91-136 24-64 (353)
71 3a79_B TLR6, VLRB.59, TOLL-lik 47.4 13 0.00043 34.7 3.5 32 105-136 33-64 (562)
72 3o53_A Protein LRIM1, AGAP0063 45.8 5.1 0.00017 34.5 0.4 23 1-23 239-261 (317)
73 2z81_A CD282 antigen, TOLL-lik 44.9 14 0.00047 34.0 3.3 26 110-135 12-37 (549)
74 4fyk_A Deoxyribonucleoside 5'- 44.0 74 0.0025 24.8 7.0 77 145-233 16-102 (152)
75 3g06_A SSPH2 (leucine-rich rep 25.9 16 0.00056 35.0 0.4 31 105-136 63-93 (622)
76 4ggj_A Mitochondrial cardiolip 25.9 76 0.0026 25.3 4.5 59 142-206 41-99 (196)
77 2z7x_B TOLL-like receptor 1, v 23.9 53 0.0018 29.8 3.5 31 106-136 3-33 (520)
78 1v0w_A Phospholipase D; hydrol 21.2 1.1E+02 0.0037 28.3 5.1 59 177-236 64-122 (506)
79 3oja_A Leucine-rich immune mol 20.5 26 0.0009 32.1 0.6 22 1-22 239-260 (487)
No 1
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-38 Score=318.11 Aligned_cols=233 Identities=21% Similarity=0.280 Sum_probs=162.3
Q ss_pred CCeEEecCCCcccccCchHHHHHHhhccCCCCccccc-CCCceecCCcc-cccccccccccccCCceeccCCCcc----e
Q psy11469 1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIAD-LESLYCRMVYE-ENLITYDNIFIADSSKFLCDYEEHC----F 74 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~-~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~~~~~~----~ 74 (267)
|++|+|++|||.|+|++.||.+|+.. .+..+.+ ...+.|.+|.. +|. ++.+++. -.|...... +
T Consensus 549 L~~l~l~~Np~~C~c~~~~f~~~~~~----~~~~~~~~~~~~~C~~p~~~~g~----~l~~~~~--~~C~~~~~~~~~~~ 618 (844)
T 3j0a_A 549 LSVLDITHNKFICECELSTFINWLNH----TNVTIAGPPADIYCVYPDSFSGV----SLFSLST--EGCDEEEVLKSLKF 618 (844)
T ss_dssp CCEEEEEEECCCCSSSCCSHHHHHHH----TTTTTCCCGGGCCCSSCSSSCSC----CTTTCCC--CCC----------C
T ss_pred cCEEEecCCCcccccccHHHHHHHHh----cCcccccccccCccCCchhhCCC----ccccCcc--ccCCchhhccccce
Confidence 57899999999999999999999963 2223333 37789999999 777 8988876 368753211 0
Q ss_pred eccccccCCccccCCCCCccceeee--cCCCceeEEEcCcccccccCCCCCCCcceecccCCCCCceeecCCCCHHHHHH
Q psy11469 75 SLCRCCEYGACDCRMSCPFNCTCYN--DQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQAYVIYSLKDEPFVKQ 152 (267)
Q Consensus 75 ~~~~~~~~~~~~~~~~cp~~c~c~~--~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~DaFIsy~~~D~~~v~~ 152 (267)
....++...... .++....+.+++ ...||..+.. .+ +....+. -.-++..|||||||+++|++||.+
T Consensus 619 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~y~~~~~-~~--~~~~~~~-------~~~~~~~yd~fisy~~~d~~~v~~ 687 (844)
T 3j0a_A 619 SLFIVCTVTLTL-FLMTILTVTKFRGFCFICYKTAQR-LV--FKDHPQG-------TEPDMYKYDAYLCFSSKDFTWVQN 687 (844)
T ss_dssp HHHHHHHHHHHH-HHHTTTSHHHHC-------------------CCCGG-------GSSSCCCCSEEEECCSTTHHHHHH
T ss_pred ehhHHHHHHHHH-HHHHHHHHHHHhhhhhhhhHHHHH-HH--hcccccc-------ccccceeccEEEEeeCCcHHHHHH
Confidence 000000000000 111111111221 1224443321 11 1111000 011345799999999999999998
Q ss_pred hhhhccCCC---CCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHHHHHHHHHHhhcCCCcEE
Q psy11469 153 ILLPGLAFK---DPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLF 229 (267)
Q Consensus 153 ~L~~~Le~~---~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e~~~a~~~~~~~~~~~lI 229 (267)
+|.+.||++ ++||++|+++|||.||+ ++.++|.+||++|||+|+|+|++|++|+||++|++.|+++++++++++||
T Consensus 688 ~l~~~Le~~~~~~~~~~~~~~~rd~~~G~-~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~~e~~~a~~~~~~~~~~~~i 766 (844)
T 3j0a_A 688 ALLKHLDTQYSDQNRFNLCFEERDFVPGE-NRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALI 766 (844)
T ss_dssp THHHHHHSTTTTTTCSCEECSSSSCCSSS-CHHHHHHHHHHHSSEEEEEECTTHHHHTSTTHHHHHHHSCCCCSSCTTEE
T ss_pred HHHHHHhhccccCCceEEEEEccccCCCc-hHHHHHHHHHHHhCeEEEEeccccccChHHHHHHHHHHHHHHHhcCCcEE
Confidence 999999983 47999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCccccCCccHHHHHHHhhhcc
Q psy11469 230 IIMLPPHSNILVIMPMSIYHLSVLLQDNQ 258 (267)
Q Consensus 230 ~v~~~~i~~~~~~~p~~~~~l~~l~~~~~ 258 (267)
||++|+++.+. + .++..||++|+++.
T Consensus 767 ~i~~~~~~~~~--~-~~~~~l~~~~~~~~ 792 (844)
T 3j0a_A 767 MVVVGSLSQYQ--L-MKHQSIRGFVQKQQ 792 (844)
T ss_dssp EEESSCCCSSS--C-CSCSSTTHHHHTTC
T ss_pred EEEeccCChHH--h-hhhHHHHHHHhhCC
Confidence 99999999987 4 35667777777653
No 2
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.97 E-value=1.1e-31 Score=224.32 Aligned_cols=125 Identities=26% Similarity=0.416 Sum_probs=108.8
Q ss_pred cCCCCCceeecCCCCHHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHH
Q psy11469 132 DDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRP 211 (267)
Q Consensus 132 ~~n~~DaFIsy~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~ 211 (267)
++..|||||||+++|++||.++|.+.||++++|+++|+++||+.||. ++.++|.+||++||++|+|||++|++|+||.+
T Consensus 32 ~~~~yDvFISys~~D~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~-~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~ 110 (178)
T 2j67_A 32 RNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGK-SISENIVSFIEKSYKSIFVLSPNFVQNEWCHY 110 (178)
T ss_dssp CSCCEEEEEECCGGGHHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTS-CHHHHHHHHHHTEEEEEEEECHHHHHHTGGGT
T ss_pred CCccceEEEECCCCCHHHHHHHHHHHHhcccCCeEEEEecccCCCCc-cHHHHHHHHHHhCCEEEEEecccccccchHHH
Confidence 34469999999999999998779999998547999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEEEcCCCCCccccCCccHHHHHHHhhhccc
Q psy11469 212 EFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQDNQA 259 (267)
Q Consensus 212 e~~~a~~~~~~~~~~~lI~v~~~~i~~~~~~~p~~~~~l~~l~~~~~~ 259 (267)
|++.|+++.+++++++||||++++++... +|..+..||.+|+.+.-
T Consensus 111 El~~a~~~~~~~~~~~vIpV~~~~i~~~~--lp~~~~~Lr~~l~~~t~ 156 (178)
T 2j67_A 111 EFYFAHHNLFHENSDHIILILLEPIPFYC--IPTRYHKLKALLEKKAY 156 (178)
T ss_dssp HHHHTTCC-------CEEEEESSCCCGGG--SCTTCHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhcCCCEEEEEEecCCChHH--CChhHHHHHHHHhcCCE
Confidence 99999998888888899999999999987 88888899999886653
No 3
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.97 E-value=8.7e-32 Score=218.95 Aligned_cols=123 Identities=24% Similarity=0.439 Sum_probs=113.9
Q ss_pred CCCCCceeecCCCCHHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHH
Q psy11469 133 DTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPE 212 (267)
Q Consensus 133 ~n~~DaFIsy~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e 212 (267)
+..|||||||+++|++||.++|.+.||+..+|+++|+++||+.||. ++.++|.+||++||++|+|+|++|++|+||..|
T Consensus 3 ~~~yDvFiSy~~~D~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~-~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~E 81 (149)
T 1fyx_A 3 NIXYDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGK-WIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYE 81 (149)
T ss_dssp SCCEEEEEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSS-CHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHH
T ss_pred CccceEEEECCcccHHHHHHHHHHHHhcCCCCeEEeeccccCCCch-hHHHHHHHHHHHcCEEEEEeCcchhccchHHHH
Confidence 3469999999999999998669999998546999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEEEcCCCCCccccCCccHHHHHHHhhhcc
Q psy11469 213 FKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQDNQ 258 (267)
Q Consensus 213 ~~~a~~~~~~~~~~~lI~v~~~~i~~~~~~~p~~~~~l~~l~~~~~ 258 (267)
++.|+++.+++++++||||++++++... +|.++..||.+|+.+.
T Consensus 82 l~~a~~~~~~~~~~~vIpv~~~~i~~~~--~p~~~~~Lr~~l~~~t 125 (149)
T 1fyx_A 82 LDFSHFRLFDENNDAAILILLEPIEKKA--IPQRFXKLRKIMNTKT 125 (149)
T ss_dssp SCCSCCTTCGGGTTCCEEEESSCCCTTT--SCSSCHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCChhh--cChHHHHHHHHhcCCC
Confidence 9999988888888899999999999987 8888899999998654
No 4
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.95 E-value=1.7e-29 Score=207.58 Aligned_cols=119 Identities=21% Similarity=0.257 Sum_probs=99.0
Q ss_pred CCCceeecCCCCHHHHHH----------h-hhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCc
Q psy11469 135 PCQAYVIYSLKDEPFVKQ----------I-LLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAF 203 (267)
Q Consensus 135 ~~DaFIsy~~~D~~~v~~----------~-L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~f 203 (267)
.|||||||+++|.+||.+ + |.+.||++ +||++|+++||+.||. ++.++|.++|++||++|+|||++|
T Consensus 2 ~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~-~g~~l~~~~rD~~~G~-~i~~~i~~~I~~Sr~~IvVlS~~y 79 (159)
T 1t3g_A 2 DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKH-YGYKLFIPDRDLIPTG-TYIEDVARCVDQSKRLIIVMTPNY 79 (159)
T ss_dssp CBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHT-SCCCEECHHHHCCCCT-THHHHHHHHHHTBSEEEEEECHHH
T ss_pred CceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCC-CCeEEEEEcccccCcc-chHHHHHHHHHHcCEEEEEEccch
Confidence 489999999999765543 2 44579953 7999999999999999 999999999999999999999999
Q ss_pred c-cccCcHHHHHHHHHHHhhcCCCcEEEEEcCCCCCccccCCccHHHHHHHhhhc
Q psy11469 204 I-YGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQDN 257 (267)
Q Consensus 204 l-~s~w~~~e~~~a~~~~~~~~~~~lI~v~~~~i~~~~~~~p~~~~~l~~l~~~~ 257 (267)
+ +|+||.+|++.|+++++++++.+||||++++++... ....+..||++|+.+
T Consensus 80 ~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~~~--~~~~~~~L~~~l~~~ 132 (159)
T 1t3g_A 80 VVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGIM--NYQEVEALKHTIKLL 132 (159)
T ss_dssp HHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCSHH--HHHHHHHHHHTCSSE
T ss_pred hhcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccccc--cccchHHHHHHHhhC
Confidence 8 999999999999999999988999999999998642 001245799988855
No 5
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.94 E-value=6.8e-29 Score=204.13 Aligned_cols=105 Identities=24% Similarity=0.284 Sum_probs=97.3
Q ss_pred cCCCCCceeecCCCCHHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHH-hcCEEEEEecCCcccccCcH
Q psy11469 132 DDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIE-RSEKVIMVLSRAFIYGDWSR 210 (267)
Q Consensus 132 ~~n~~DaFIsy~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~-~Sr~~I~VlS~~fl~s~w~~ 210 (267)
++..|||||||+++|++||. +|.+.||+..+||++|+++||+.||. ++.++|.++|+ +||++|+|+|++|++|+||.
T Consensus 13 ~~~~yDvFISys~~D~~fv~-~L~~~Le~~~~g~~~~~~~rd~~~G~-~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~ 90 (160)
T 2js7_A 13 MPERFDAFICYCPSDIQFVQ-EMIRQLEQTNYRLKLCVSDRDVLPGT-CVWSIASELIEKRCRRMVVVVSDDYLQSKECD 90 (160)
T ss_dssp CTTCEEEEEECCGGGHHHHH-HHHHHHHTSSSCCCCEESCCSSSSSC-SCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred CCcceEEEEEcccccHHHHH-HHHHHHhcCCCceEEEEeCCCCCCCC-cHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence 34579999999999999998 89999998646899999999999999 99999999999 79999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEcCCCCC
Q psy11469 211 PEFKSALNGSLMRHRKPLFIIMLPPHSN 238 (267)
Q Consensus 211 ~e~~~a~~~~~~~~~~~lI~v~~~~i~~ 238 (267)
+|++.|+++.+++++++||||++++++.
T Consensus 91 ~El~~a~~~~~~~~~~~vIpV~~~~~~~ 118 (160)
T 2js7_A 91 FQTKFALSLSPGAHQKRLIPIKYKAMKK 118 (160)
T ss_dssp HHHHHHHHHCTTHHHHTEEEEESSCCCC
T ss_pred HHHHHHHHHHHccCCCEEEEEEEcccch
Confidence 9999999988777778999999999864
No 6
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.93 E-value=5.4e-28 Score=195.86 Aligned_cols=109 Identities=14% Similarity=0.162 Sum_probs=78.4
Q ss_pred CCCCCceeecCCCCHHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHH
Q psy11469 133 DTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPE 212 (267)
Q Consensus 133 ~n~~DaFIsy~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e 212 (267)
+..|||||||+++|++||. +|.+.||++.+|+++|+++||+.||+ ++.++|.+||++||++|+|||++|++|.||.+|
T Consensus 8 ~k~YDvFISy~~~D~~~v~-~L~~~Le~~~~g~~~~l~~rD~~~G~-~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~E 85 (146)
T 3ub2_A 8 SKDYDVCVCHSEEDLVAAQ-DLVSYLEGSTASLRCFLQLRDATPGG-AIVSELCQALSSSHCRVLLITPGFLQDPWCKYQ 85 (146)
T ss_dssp SSSEEEEEECCGGGHHHHH-HHHHHHHC-------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHH
T ss_pred CCcceEEEeCChhhHHHHH-HHHHHHhCcCCCeEEEEECccccccc-cHHHHHHHHHHhCCEEEEEECcccccCHHHHHH
Confidence 3469999999999999996 89999998546999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEEEcCCCCCccccCCccH
Q psy11469 213 FKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSI 247 (267)
Q Consensus 213 ~~~a~~~~~~~~~~~lI~v~~~~i~~~~~~~p~~~ 247 (267)
++.|+++.+..+ ++||||+ ++++... +|..+
T Consensus 86 l~~al~~~~~~~-~~vIpv~-~~v~~~~--lp~~L 116 (146)
T 3ub2_A 86 MLQALTEAPGAE-GCTIPLL-SGLSRAA--YPPEL 116 (146)
T ss_dssp HHHHHHTSSSSS-SEEEEEE-CSCCGGG--SCGGG
T ss_pred HHHHHHHHhhcC-CcEEEEE-cCCChhh--CCHHH
Confidence 999999876544 4889887 4465554 55433
No 7
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=99.81 E-value=6.4e-21 Score=161.02 Aligned_cols=100 Identities=12% Similarity=0.176 Sum_probs=90.8
Q ss_pred CCCceeecCCCCH--HHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHH
Q psy11469 135 PCQAYVIYSLKDE--PFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPE 212 (267)
Q Consensus 135 ~~DaFIsy~~~D~--~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e 212 (267)
.|||||||+++|. .||. +|.+.|++ .|+++|++++++.+|+ .+.++|.+||++||..|+|+|++|+.|.||..|
T Consensus 35 ~yDVFISfrg~D~r~~Fv~-~L~~aL~~--~GI~~f~D~~el~~G~-~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~E 110 (204)
T 3ozi_A 35 EYEVFLSFRGPDTREQFTD-FLYQSLRR--YKIHTFRDDDELLKGK-EIGPNLLRAIDQSKIYVPIISSGYADSKWCLME 110 (204)
T ss_dssp CCCEEEEECHHHHTTTHHH-HHHHHHHH--TTCCEEEEETTTCCGG-GTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHH
T ss_pred CCeEEEeccccCCCHHHHH-HHHHHHHH--CCCcEEEeCCccCCCC-chHHHHHHHHHhCcEeeEEEEcccccCcHHHHH
Confidence 6999999999996 5886 89999998 4999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEEEcCCCCCc
Q psy11469 213 FKSALNGSLMRHRKPLFIIMLPPHSNI 239 (267)
Q Consensus 213 ~~~a~~~~~~~~~~~lI~v~~~~i~~~ 239 (267)
+..+++..-+.++++||||||+ +.+.
T Consensus 111 L~~I~e~~~~~~~~~ViPIFY~-VdPs 136 (204)
T 3ozi_A 111 LAEIVRRQEEDPRRIILPIFYM-VDPS 136 (204)
T ss_dssp HHHHHHHHHHCTTSEECCEEES-SCHH
T ss_pred HHHHHHHHHhcCCeeeEEEEee-cCHH
Confidence 9999987655567799999996 5543
No 8
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.81 E-value=2.6e-21 Score=157.75 Aligned_cols=97 Identities=20% Similarity=0.273 Sum_probs=87.9
Q ss_pred CCCCceeecCCCCH-HHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHH
Q psy11469 134 TPCQAYVIYSLKDE-PFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPE 212 (267)
Q Consensus 134 n~~DaFIsy~~~D~-~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e 212 (267)
..||+||||+++|+ .||. +|...|++ .|+++|++++|+.+|. .+.++|.++|++|+.+|+|+|++|++|.||..|
T Consensus 19 ~~~dvFISy~~~D~~~~~~-~L~~~L~~--~gi~v~~D~~~l~~G~-~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E 94 (154)
T 3h16_A 19 PPHDIFISHAWEDKADFVE-ALAHTLRA--AGAEVWYDDFSLRPGD-SLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94 (154)
T ss_dssp CSEEEEEEEEGGGTTTTHH-HHHHHHHH--HTCCEECGGGEECTTC-CHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred CCceEEEECcccChHHHHH-HHHHHHHH--CCCcEEEcHHhCCCcc-HHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence 36899999999997 5786 89999998 5999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEEEcCC
Q psy11469 213 FKSALNGSLMRHRKPLFIIMLPP 235 (267)
Q Consensus 213 ~~~a~~~~~~~~~~~lI~v~~~~ 235 (267)
+..|+++.. ..+++||||+++.
T Consensus 95 l~~~~~~~~-~~~~~iiPV~~~v 116 (154)
T 3h16_A 95 LDGLFQLES-SGRSRILPIWHKV 116 (154)
T ss_dssp HHHHTCCCT-TSCCCEEEEEESC
T ss_pred HHHHHHHHh-cCCCEEEEEEecC
Confidence 999987643 3456899999963
No 9
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=99.80 E-value=8.4e-21 Score=157.49 Aligned_cols=100 Identities=13% Similarity=0.208 Sum_probs=77.1
Q ss_pred CCCceeecCCCCH--HHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHH
Q psy11469 135 PCQAYVIYSLKDE--PFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPE 212 (267)
Q Consensus 135 ~~DaFIsy~~~D~--~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e 212 (267)
.|||||||+++|. .||. +|.+.|++ .|+++|++++|+.+|+ .+.++|.+||++||..|+|+|++|++|.||..|
T Consensus 8 ~yDVFiSfrg~D~r~~Fv~-~L~~~L~~--~gi~~f~D~~~l~~G~-~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E 83 (176)
T 3jrn_A 8 KYDVFLSFRGHDTRHNFIS-FLYKELVR--RSIRTFKDDKELENGQ-RFSPELKSPIEVSRFAVVVVSENYAASSWCLDE 83 (176)
T ss_dssp CEEEEEEECHHHHTTTHHH-HHHHHHHH--TTCCEECCCC---------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred CCeEEEECcCcccChHHHH-HHHHHHHH--CCCEEEEEcccccCCC-chHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence 5899999999996 6886 89999998 4999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEEEcCCCCCcc
Q psy11469 213 FKSALNGSLMRHRKPLFIIMLPPHSNIL 240 (267)
Q Consensus 213 ~~~a~~~~~~~~~~~lI~v~~~~i~~~~ 240 (267)
+..+++.. ++.+.+|||||++ +.+..
T Consensus 84 L~~i~~~~-~~~~~~ViPIfy~-V~ps~ 109 (176)
T 3jrn_A 84 LVTIMDFE-KKGSITVMPIFYG-VEPNH 109 (176)
T ss_dssp HHHHHHHH-HTTSCEEEEEECS-SCHHH
T ss_pred HHHHHhhh-ccCCCEEEEEEec-CCHHH
Confidence 99999876 5677899999996 54433
No 10
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.18 E-value=7.7e-12 Score=98.66 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=48.9
Q ss_pred CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceecc
Q psy11469 1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCD 68 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~ 68 (267)
|++|+|++|||.|||++.||.+|+.. ... ......++|++|.. +|+ +|.++..+++.|.
T Consensus 57 L~~L~L~~NP~~CdC~l~~l~~wl~~----~~~-~~~~~~~~C~~P~~l~g~----~l~~l~~~~l~c~ 116 (130)
T 3rfe_A 57 LRTAHLGANPWRCDCRLVPLRAWLAG----RPE-RAPYRDLRCVAPPALRGR----LLPYLAEDELRAA 116 (130)
T ss_dssp CCEEECCSSCCBCSGGGHHHHHHHHT----SSC-SGGGTTCBCCBSTTTTTC----BGGGCCHHHHHHT
T ss_pred cCEEEecCCCeeccCccHHHHHHHHh----Ccc-cccccCcEeCcChHHcCC----CcccCCHHHhhCc
Confidence 67899999999999999999999973 111 12247899999999 777 9999999888865
No 11
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.84 E-value=1.2e-09 Score=104.61 Aligned_cols=58 Identities=14% Similarity=0.357 Sum_probs=47.1
Q ss_pred CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceeccC
Q psy11469 1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCDY 69 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~~ 69 (267)
|++|+|++|||.|||++.||.+|++. ....+.+...++|++|.. +|+ +|.+++ +.|..
T Consensus 569 L~~L~L~~Np~~C~C~~~~~~~wl~~----~~~~~~~~~~~~C~~P~~~~g~----~l~~~~---~~C~~ 627 (635)
T 4g8a_A 569 LAFLNLTQNDFACTCEHQSFLQWIKD----QRQLLVEVERMECATPSDKQGM----PVLSLN---ITCQM 627 (635)
T ss_dssp CCEEECTTCCBCCSGGGHHHHHHHHH----TTTTBSCGGGCBBCSSTTTTTC----BGGGCC---CCC--
T ss_pred CCEEEeeCCCCcccCCcHHHHHHHHh----CCCccCCCCCceeCCchHHCCC----Eeeeec---cCCCC
Confidence 67899999999999999999999974 223356678899999999 777 999996 46864
No 12
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.71 E-value=6.4e-09 Score=88.21 Aligned_cols=61 Identities=28% Similarity=0.521 Sum_probs=48.2
Q ss_pred CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceeccCCCc
Q psy11469 1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCDYEEH 72 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~~~~~ 72 (267)
|++|+|++|||.|||++.||.+|+.. .. .....++|++|.. +|+ .+.+++++++.|.....
T Consensus 154 L~~L~L~~N~~~c~c~l~~l~~~l~~----~~---~~~~~~~C~~P~~l~g~----~l~~l~~~~~~c~~~~~ 215 (220)
T 2v9t_B 154 IQTMHLAQNPFICDCHLKWLADYLHT----NP---IETSGARCTSPRRLANK----RIGQIKSKKFRCSAAAH 215 (220)
T ss_dssp CCEEECCSSCEECSGGGHHHHHHHHH----CC---CBCSCCBEEESGGGTTC----BGGGSCGGGCCC-----
T ss_pred CCEEEeCCCCcCCCCccHHHHHHHHh----CC---CCccCCCcCCchHHcCC----chhhCCHHHCcCccccc
Confidence 67899999999999999999999973 11 1236789999999 777 99999999999986543
No 13
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.69 E-value=7.1e-09 Score=86.29 Aligned_cols=59 Identities=25% Similarity=0.496 Sum_probs=47.8
Q ss_pred CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceeccCC
Q psy11469 1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCDYE 70 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~~~ 70 (267)
|++|+|++|||.|||++.||.+|+.. . ......++|++|.. +|+ .+.+++.+.+.|...
T Consensus 128 L~~L~L~~N~~~C~c~l~~l~~~~~~----~---~~~~~~~~C~~P~~l~g~----~l~~~~~~~~~~~~~ 187 (193)
T 2wfh_A 128 LSHLAIGANPLYCDCNMQWLSDWVKS----E---YKEPGIARCAGPGEMADK----LLLTTPSKKFTCAAA 187 (193)
T ss_dssp CCEEECCSSCEECSGGGHHHHHHHHH----S---SCCCSCCBEEESGGGTTC----BTTTSCGGGCCC---
T ss_pred ccEEEeCCCCeecCCcCHHHHHHHHh----c---cCCCCCcCcCCchHHCCC----CcccCChHHeeehhh
Confidence 67899999999999999999999973 1 12346789999999 777 999999988888754
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.56 E-value=3.8e-08 Score=91.48 Aligned_cols=61 Identities=20% Similarity=0.334 Sum_probs=46.1
Q ss_pred CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceeccCC
Q psy11469 1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCDYE 70 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~~~ 70 (267)
|++|+|++|||.|||++.||..|++.. . .......++|.+|.. +|+ .+.+++...+.|...
T Consensus 281 L~~L~L~~Np~~CdC~l~~l~~~~~~~----~-~~~~~~~~~C~~P~~l~g~----~l~~l~~~~~~C~~P 342 (440)
T 3zyj_A 281 LERIHLHHNPWNCNCDILWLSWWIKDM----A-PSNTACCARCNTPPNLKGR----YIGELDQNYFTCYAP 342 (440)
T ss_dssp CCEEECCSSCEECSSTTHHHHHHHHTT----S-CSSCSCCCBEEESTTTTTC----BCC----CCSCCCCC
T ss_pred CCEEEcCCCCccCCCCchHHHHHHHhc----c-ccCCccccCCCChhHhcCc----cHhHhhhhhccCCCC
Confidence 678999999999999999999999731 1 112236789999999 777 999999988999754
No 15
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.45 E-value=9e-08 Score=79.25 Aligned_cols=60 Identities=22% Similarity=0.503 Sum_probs=49.7
Q ss_pred CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceeccCCC
Q psy11469 1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCDYEE 71 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~~~~ 71 (267)
|++|+|++|||.|+|.+.||..|+... . + ..+...|.+|.. +|+ ++.+++.+++.|....
T Consensus 128 L~~L~L~~N~l~c~c~l~~~~~~l~~~----~--~-~~~~~~C~~P~~l~~~----~l~~l~~~~~~C~~~~ 188 (192)
T 1w8a_A 128 LTSLNLASNPFNCNCHLAWFAEWLRKK----S--L-NGGAARCGAPSKVRDV----QIKDLPHSEFKCSSEN 188 (192)
T ss_dssp CCEEECTTCCBCCSGGGHHHHHHHHHH----C--C-SGGGCBBCSSTTTTTS----BGGGSCTTTCCCCCC-
T ss_pred CCEEEeCCCCccCcCcchHHHHHHHHc----C--C-CCCCCCCCCChHHcCC----ChhhCcHhhcCcCCCC
Confidence 678999999999999999999999731 1 1 135789999999 777 9999999999998653
No 16
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.40 E-value=1e-07 Score=88.92 Aligned_cols=61 Identities=20% Similarity=0.380 Sum_probs=49.0
Q ss_pred CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceeccCC
Q psy11469 1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCDYE 70 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~~~ 70 (267)
|++|+|++|||.|||++.||.+|++... . ......++|.+|.. +|+ .+.+++...+.|...
T Consensus 292 L~~L~L~~Np~~CdC~~~~l~~~l~~~~---~--~~~~~~~~C~~P~~l~g~----~l~~~~~~~~~C~~P 353 (452)
T 3zyi_A 292 LVELHLHHNPWNCDCDILWLAWWLREYI---P--TNSTCCGRCHAPMHMRGR----YLVEVDQASFQCSAP 353 (452)
T ss_dssp CCEEECCSSCEECSTTTHHHHHHHHHHC--------CCSSCBEEESTTTTTC----BTTSCCGGGCCCCCC
T ss_pred CCEEEccCCCcCCCCCchHHHHHHHHhC---c--cCCccCcEeCCchHhccc----hhhccchhhhcccCc
Confidence 6789999999999999999999997421 1 11235689999999 777 999999888999754
No 17
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.38 E-value=1.7e-07 Score=79.26 Aligned_cols=59 Identities=25% Similarity=0.466 Sum_probs=48.4
Q ss_pred CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceeccCC
Q psy11469 1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCDYE 70 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~~~ 70 (267)
|++|+|++|||.|+|++.||..|+.. .. + .....+|..|.. +|+ ++.+++.+++.|...
T Consensus 155 L~~L~L~~N~l~c~c~l~~l~~~~~~----~~--~-~~~~~~C~~P~~l~g~----~l~~l~~~~~~~~~~ 214 (220)
T 2v70_A 155 LSTLNLLANPFNCNCYLAWLGEWLRK----KR--I-VTGNPRCQKPYFLKEI----PIQDVAIQDFTCDDA 214 (220)
T ss_dssp CCEEECCSCCEECSGGGHHHHHHHHH----SC--C-BCCCCEEEESGGGTTE----EGGGSCGGGCCCCC-
T ss_pred CCEEEecCcCCcCCCchHHHHHHHHh----cC--c-cccCCccCCChHHCCC----ChhhCCHHHcccccc
Confidence 67899999999999999999999973 11 1 236779999999 777 999999988877754
No 18
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.13 E-value=2.7e-07 Score=89.97 Aligned_cols=60 Identities=18% Similarity=0.401 Sum_probs=23.7
Q ss_pred CCeEEecCCCcccccCc-hHHHHHHhhccCCCCcccccC-CCceecCCcc-cccccccccccccCCceecc
Q psy11469 1 MPKFFLGENPFECDCKM-EWLQRAHEIHKDGIYPEIADL-ESLYCRMVYE-ENLITYDNIFIADSSKFLCD 68 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~l-~wl~~w~~~~~~~~~~~~~~~-~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~ 68 (267)
|++|+|++|||.|||++ .||.+|++. ....+.+. ..++|++|.. +|+ ++.++++.+..|.
T Consensus 611 L~~l~l~~N~~~c~c~~~~~~~~~~~~----~~~~~~~~~~~~~C~~p~~~~g~----~l~~~~~~~~~~~ 673 (680)
T 1ziw_A 611 LTELDMRFNPFDCTCESIAWFVNWINE----THTNIPELSSHYLCNTPPHYHGF----PVRLFDTSSCKDS 673 (680)
T ss_dssp CSEEECTTCCCCBCCCCCSSEECCSSC----C---------------------------------------
T ss_pred cCEEEccCCCcccCCccHHHHHHHHHh----cCcccccccCCcEECCchHHCCC----cccccChhhcCCC
Confidence 67899999999999996 999999862 33334453 6889999999 777 9999998765554
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.11 E-value=9.2e-07 Score=84.87 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=33.3
Q ss_pred CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceecc
Q psy11469 1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCD 68 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~ 68 (267)
|++|+|++|||.|+|++.||.+|+.. ....+.+...++|.+|.. +|+ ++.+++.+ .|.
T Consensus 547 L~~l~l~~N~~~c~c~~~~~~~~l~~----~~~~~~~~~~~~C~~p~~~~~~----~l~~~~~~--~c~ 605 (606)
T 3vq2_A 547 LAFFNLTNNSVACICEHQKFLQWVKE----QKQFLVNVEQMTCATPVEMNTS----LVLDFNNS--TCY 605 (606)
T ss_dssp CCEEECCSCCCCCSSTTHHHHTTTTT----SSSSBSSGGGCCCC-------------------------
T ss_pred CcEEEccCCCcccCCccHHHHHHHHc----CcccccCCccceeCCChHhCCC----Eeeecccc--cCC
Confidence 67899999999999999999999863 223355668999999999 777 99999874 464
No 20
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.59 E-value=4e-05 Score=61.95 Aligned_cols=51 Identities=22% Similarity=0.418 Sum_probs=36.2
Q ss_pred CCeEEecCCCcccccC-chHHHHHHhhccCCCCccc-----ccCCCceecCCcccccccccccccccC
Q psy11469 1 MPKFFLGENPFECDCK-MEWLQRAHEIHKDGIYPEI-----ADLESLYCRMVYEENLITYDNIFIADS 62 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~-l~wl~~w~~~~~~~~~~~~-----~~~~~~~C~~P~~~g~l~~~~l~~~~~ 62 (267)
|++|+|++|||.|+|. +.||..|+... ...+ .+.+.++|+.|.. ++.++..
T Consensus 104 L~~L~L~~N~~~c~c~~l~~l~~~l~~~----~~~~~~~~~~~~~~~~C~~~~~-------~~~~~~~ 160 (170)
T 3g39_A 104 LTHIWLLNNPWDCACSDILYLSRWISQH----PGLVFGYLNLDPDSARCSGTNT-------PVRAVTE 160 (170)
T ss_dssp CCEEECCSSCBCTTBGGGHHHHHHHHHC----GGGEECSSSBCGGGSBBCC-CC-------BGGGCCS
T ss_pred CCEEEeCCCCCCCCchhHHHHHHHHHhC----cceeeccccCCcccceeCCCCc-------cchhccc
Confidence 6899999999999995 99999999731 1112 2457889977633 5555544
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.58 E-value=3.7e-05 Score=71.60 Aligned_cols=57 Identities=19% Similarity=0.420 Sum_probs=43.7
Q ss_pred CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccC----Cceecc
Q psy11469 1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADS----SKFLCD 68 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~----~~~~C~ 68 (267)
|++|+|++|||.|||++.|+.+|.. +. ....+...|.+|.. +|+ .+.++.. ..+.|.
T Consensus 322 L~~L~l~~N~l~c~c~~~~~~~~~~----~~---~~~~~~~~C~~p~~~~g~----~l~~~~~~~~~~~~~C~ 383 (477)
T 2id5_A 322 LETLILDSNPLACDCRLLWVFRRRW----RL---NFNRQQPTCATPEFVQGK----EFKDFPDVLLPNYFTCR 383 (477)
T ss_dssp CCEEECCSSCEECSGGGHHHHTTTT----SS---CCTTCCCBEEESGGGTTC----BGGGSCSSCCTTSSCCE
T ss_pred cCEEEccCCCccCccchHhHHhhhh----cc---ccCccCceeCCchHHcCC----chhhCccccccceeEec
Confidence 6889999999999999999998863 11 12347789999999 777 8887754 245665
No 22
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.52 E-value=5.3e-05 Score=66.51 Aligned_cols=26 Identities=31% Similarity=0.726 Sum_probs=24.0
Q ss_pred CCeEEecCCCcccccCchHHHHHHhh
Q psy11469 1 MPKFFLGENPFECDCKMEWLQRAHEI 26 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~l~wl~~w~~~ 26 (267)
|+.|+|++|||.|+|++.||.+|+..
T Consensus 197 L~~l~L~~Np~~C~c~~~~l~~wl~~ 222 (290)
T 1p9a_G 197 LPFAFLHGNPWLCNCEILYFRRWLQD 222 (290)
T ss_dssp CSEEECCSCCBCCSGGGHHHHHHHHH
T ss_pred CCeEEeCCCCccCcCccHHHHHHHHh
Confidence 57899999999999999999999973
No 23
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.35 E-value=9.9e-05 Score=65.81 Aligned_cols=43 Identities=28% Similarity=0.509 Sum_probs=34.7
Q ss_pred CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc
Q psy11469 1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE 48 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~ 48 (267)
|++|+|++|+|.|+|++.||.+|+.. ... ..+.+.++|..|..
T Consensus 105 L~~l~l~~N~~~c~c~l~~~~~~~~~----~~~-~l~~~~~~C~~~~~ 147 (347)
T 2ifg_A 105 LQELVLSGNPLHCSCALRWLQRWEEE----GLG-GVPEQKLQCHGQGP 147 (347)
T ss_dssp CCEEECCSSCCCCCGGGHHHHHHHHT----TCS-SCGGGCCCCSSSSC
T ss_pred ceEEEeeCCCccCCCccHHHHHHHHh----Ccc-cccccCCCCCCChH
Confidence 68899999999999999999999963 111 22458899998875
No 24
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.35 E-value=0.00012 Score=59.44 Aligned_cols=26 Identities=23% Similarity=0.738 Sum_probs=23.7
Q ss_pred CCeEEecCCCcccccC-chHHHHHHhh
Q psy11469 1 MPKFFLGENPFECDCK-MEWLQRAHEI 26 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~-l~wl~~w~~~ 26 (267)
|++|+|++|||.|+|. +.||..|+..
T Consensus 107 L~~L~L~~N~~~c~~~~~~~l~~~~~~ 133 (174)
T 2r9u_A 107 LTHIYLYNNPWDCECRDIMYLRNWVAD 133 (174)
T ss_dssp CSEEECCSSCBCTTBGGGHHHHHHHHH
T ss_pred CCEEEeCCCCcccccccHHHHHHHHHh
Confidence 6889999999999996 9999999963
No 25
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.31 E-value=0.00015 Score=62.59 Aligned_cols=54 Identities=13% Similarity=0.365 Sum_probs=38.6
Q ss_pred CCeEEecCCCcccccC-chHHHHHHhhccCCCCcccccCCCceecCCcccccccccccccccCCc
Q psy11469 1 MPKFFLGENPFECDCK-MEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIADSSK 64 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~-l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~~g~l~~~~l~~~~~~~ 64 (267)
|+.|+|++|||.|+|+ +.||..|+.... ...+.+.+...|..+ |+ .+.++...+
T Consensus 207 L~~L~l~~N~~~c~c~~~~~~~~~l~~~~---~~~~~~~~~~~C~~~---~~----~~~~~~~~~ 261 (270)
T 2o6q_A 207 LKMLQLQENPWDCTCNGIIYMAKWLKKKA---DEGLGGVDTAGCEKG---GK----AVLEITEKD 261 (270)
T ss_dssp CCEEECCSSCBCCSSSSSHHHHHHHHHHH---HTTCSSTTCCBBSSS---CS----BGGGCCTTT
T ss_pred CCEEEecCCCeeCCCccHHHHHHHHHhhc---cccccCccccccCCC---Ce----EeEEecchh
Confidence 6789999999999998 789999986421 111334577899653 44 677776554
No 26
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.30 E-value=0.00017 Score=60.90 Aligned_cols=47 Identities=21% Similarity=0.433 Sum_probs=32.5
Q ss_pred CCeEEecCCCcccccC-chHHHHHHhhccCCC----CcccccCCCceecCCc
Q psy11469 1 MPKFFLGENPFECDCK-MEWLQRAHEIHKDGI----YPEIADLESLYCRMVY 47 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~-l~wl~~w~~~~~~~~----~~~~~~~~~~~C~~P~ 47 (267)
|++|+|++|||.|+|. +.|+..|+....... ...+.+.+.+.|+.|.
T Consensus 161 L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~~~~C~~~~ 212 (229)
T 3e6j_A 161 LTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGTN 212 (229)
T ss_dssp CCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECTTCSBBTTTC
T ss_pred CCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCcccCCCCcCccCCCC
Confidence 6889999999999995 999999996311000 0012345778887763
No 27
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.29 E-value=6.2e-05 Score=67.97 Aligned_cols=43 Identities=33% Similarity=0.604 Sum_probs=32.6
Q ss_pred CeEEecCCCcccccCchHH-HHHHhhccCCCCccccc-CCCceecCCcc
Q psy11469 2 PKFFLGENPFECDCKMEWL-QRAHEIHKDGIYPEIAD-LESLYCRMVYE 48 (267)
Q Consensus 2 ~~l~L~~NP~~CdC~l~wl-~~w~~~~~~~~~~~~~~-~~~~~C~~P~~ 48 (267)
+.|+|++|||.|||++.|| ..|+.. ....+.+ ...++|.+|..
T Consensus 192 ~~l~l~~N~~~C~C~l~~~~~~~~~~----~~~~~~~~~~~~~C~~p~~ 236 (361)
T 2xot_A 192 NGLYLHNNPLECDCKLYQLFSHWQYR----QLSSVMDFQEDLYCMHSKK 236 (361)
T ss_dssp TTEECCSSCEECCHHHHHHHHHHHHT----TCHHHHTTGGGCEEESSSC
T ss_pred ceEEecCCCccCCcCcHHHHHHHHHh----cCCchhccCcCCEeCCChH
Confidence 5799999999999999996 568852 2222333 36899999987
No 28
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.14 E-value=8.1e-05 Score=56.68 Aligned_cols=74 Identities=15% Similarity=0.119 Sum_probs=58.0
Q ss_pred CCCceeecCCCCHHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHHHH
Q psy11469 135 PCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFK 214 (267)
Q Consensus 135 ~~DaFIsy~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e~~ 214 (267)
.|.+||||+.+| + .+.|...|. . +||...- +.|+.|..+|++.++....++|+++|++
T Consensus 4 ~~~lFISh~~~d-~--~~~L~~~l~-~-~~f~~~~-----------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~ 61 (111)
T 1eiw_A 4 EIRLYITEGEVE-D--YRVFLERLE-Q-SGLEWRP-----------------ATPEDADAVIVLAGLWGTRRDEILGAVD 61 (111)
T ss_dssp CEEEEECCCCSH-H--HHHHHHHHH-H-HCSCEEE-----------------CCSSSCSEEEEEGGGTTTSHHHHHHHHH
T ss_pred eEEEEEecccHh-H--HHHHHHHHh-C-CCCeeec-----------------CccccCCEEEEEeCCCcCCChHHHHHHH
Confidence 468999999998 2 346777775 3 5775541 5678999999999999999999999999
Q ss_pred HHHHHHhhcCCCcEEEEEcCC
Q psy11469 215 SALNGSLMRHRKPLFIIMLPP 235 (267)
Q Consensus 215 ~a~~~~~~~~~~~lI~v~~~~ 235 (267)
.|.. .+++||.|....
T Consensus 62 ~A~~-----~gkpIigV~~~g 77 (111)
T 1eiw_A 62 LARK-----SSKPIITVRPYG 77 (111)
T ss_dssp HHTT-----TTCCEEEECCSS
T ss_pred HHHH-----cCCCEEEEEcCC
Confidence 9964 467787776544
No 29
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.06 E-value=0.0005 Score=53.43 Aligned_cols=41 Identities=29% Similarity=0.707 Sum_probs=37.4
Q ss_pred CCCccceeeecCCCceeEEEcCccccc--ccCCCCCCCcceecccCCCC
Q psy11469 90 SCPFNCTCYNDQAWTTNIVDCSNSQYN--HVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~--~ip~~~p~~~~~L~L~~n~~ 136 (267)
.||..|.|. ...|+|++++|+ .+|..+|.+.+.|+|++|.+
T Consensus 1 ~CP~~C~C~------~~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l 43 (130)
T 3rfe_A 1 PCPAPCSCA------GTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNL 43 (130)
T ss_dssp CCCTTCEEE------TTEEECCSSCCCTTTSCSCCCTTCSEEECTTSCC
T ss_pred CcCCCCEEc------CCEEEeCCCCCccccCCCCCCcCCCEEECCCCcC
Confidence 389999997 468999999999 99999999999999999975
No 30
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=96.72 E-value=0.00093 Score=56.80 Aligned_cols=26 Identities=23% Similarity=0.499 Sum_probs=24.1
Q ss_pred CCeEEecCCCcccc-cCchHHHHHHhh
Q psy11469 1 MPKFFLGENPFECD-CKMEWLQRAHEI 26 (267)
Q Consensus 1 ~~~l~L~~NP~~Cd-C~l~wl~~w~~~ 26 (267)
|++|+|++|||.|+ |++.||.+|+..
T Consensus 181 L~~L~l~~N~~~c~~~~~~~l~~~~~~ 207 (251)
T 3m19_A 181 LQTITLFGNQFDCSRCEILYLSQWIRE 207 (251)
T ss_dssp CCEEECCSCCBCTTSTTHHHHHHHHHH
T ss_pred CCEEEeeCCceeCCccccHHHHHHHHh
Confidence 67999999999999 999999999963
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=96.70 E-value=0.00075 Score=64.20 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=34.6
Q ss_pred CCeEEecCCCcccccCchHHHH-HHhhccCCCCcccc------cCCCceecCCcccccccccccccc
Q psy11469 1 MPKFFLGENPFECDCKMEWLQR-AHEIHKDGIYPEIA------DLESLYCRMVYEENLITYDNIFIA 60 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~l~wl~~-w~~~~~~~~~~~~~------~~~~~~C~~P~~~g~l~~~~l~~~ 60 (267)
|++|+|++|||.|+|++.||.+ |... ....+. ....++|.+ +|+ ++.++
T Consensus 499 L~~L~l~~N~~~c~c~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~C~~---~g~----~l~~~ 554 (562)
T 3a79_B 499 LQYIWLHDNPWDCTCPGIRYLSEWINK----HSGVVRNSAGSVAPDSAKCSG---SGK----PVRSI 554 (562)
T ss_dssp CCCEECCSCCBCCCHHHHHHHHHHHHH----TTTTEECSSSSBCSSSSCBSS---SCC----CTTTC
T ss_pred CCEEEecCCCcCCCcchHHHHHHHHHh----cCCcccccccCCCCCCCccCC---CCc----Eeeee
Confidence 6789999999999999999976 9863 222232 235677865 455 55555
No 32
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.61 E-value=0.01 Score=47.39 Aligned_cols=42 Identities=36% Similarity=0.767 Sum_probs=36.2
Q ss_pred CCCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 89 MSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 89 ~~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
+.||..|+|. ...++|++.+++++|..+|...+.|+|++|.+
T Consensus 1 ~~CP~~C~C~------~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i 42 (170)
T 3g39_A 1 MACPSQCSCS------GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQI 42 (170)
T ss_dssp -CCC-CCEEE------TTEEECTTSCCSSCCSCCCTTCSEEECCSSCC
T ss_pred CcCcCcCCcC------CCEEEeCCCCcCccCccCCCCCcEEEcCCCcC
Confidence 4699999996 46799999999999999999999999999976
No 33
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.28 E-value=0.018 Score=46.30 Aligned_cols=44 Identities=27% Similarity=0.720 Sum_probs=38.9
Q ss_pred CCCCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCCC
Q psy11469 88 RMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQ 137 (267)
Q Consensus 88 ~~~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~D 137 (267)
.+.||..|+|. ...++|+..+++++|..+|...+.|+|++|.+.
T Consensus 3 ~~~CP~~C~C~------~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~ 46 (174)
T 2r9u_A 3 SAGCPSQCSCD------QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQIT 46 (174)
T ss_dssp CCSSCTTSEEC------SSEEECCSSCCSSCCSCCCTTCSEEECCSSCCC
T ss_pred CCCCCCCCEEC------CcEEEeCCCCCCccCCCcCCCCcEEEeCCCCcc
Confidence 45799999996 468999999999999999999999999999763
No 34
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=95.10 E-value=0.019 Score=47.76 Aligned_cols=42 Identities=36% Similarity=0.757 Sum_probs=37.4
Q ss_pred CCCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 89 MSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 89 ~~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
..||..|.|. ...++|+..+++++|..+|...+.|++++|.+
T Consensus 3 ~~CP~~C~C~------~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i 44 (220)
T 2v9t_B 3 LHCPAACTCS------NNIVDCRGKGLTEIPTNLPETITEIRLEQNTI 44 (220)
T ss_dssp CCSCTTSEEE------TTEEECTTSCCSSCCSSCCTTCCEEECCSSCC
T ss_pred CCCCCCCEEC------CCEEEcCCCCcCcCCCccCcCCCEEECCCCcC
Confidence 4699999997 35799999999999999999999999999975
No 35
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=94.94 E-value=0.022 Score=46.53 Aligned_cols=42 Identities=38% Similarity=0.812 Sum_probs=36.7
Q ss_pred CCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCCC
Q psy11469 90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQ 137 (267)
Q Consensus 90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~D 137 (267)
.||..|.|. ...++|+..+++.+|..+|.+.+.|++++|.+.
T Consensus 3 ~CP~~C~C~------~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~ 44 (193)
T 2wfh_A 3 RCPTECTCL------DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT 44 (193)
T ss_dssp -CCTTCEEE------TTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC
T ss_pred CCCCCCEeC------CCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc
Confidence 599999997 357999999999999999999999999999763
No 36
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=94.84 E-value=0.016 Score=51.64 Aligned_cols=40 Identities=23% Similarity=0.498 Sum_probs=35.2
Q ss_pred CCcc-ceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 91 CPFN-CTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 91 cp~~-c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
||.. |+|. .+.|+|+..++++||..+|.++++|+|++|.+
T Consensus 2 Cp~~~C~C~------~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i 42 (350)
T 4ay9_X 2 CHHRICHCS------NRVFLCQESKVTEIPSDLPRNAIELRFVLTKL 42 (350)
T ss_dssp CCCSSSEEE------TTEEEEESTTCCSCCTTCCTTCSEEEEESCCC
T ss_pred CCCCccEee------CCEEEecCCCCCccCcCcCCCCCEEEccCCcC
Confidence 7754 9997 36799999999999999999999999999965
No 37
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=94.64 E-value=0.03 Score=45.46 Aligned_cols=41 Identities=29% Similarity=0.719 Sum_probs=36.7
Q ss_pred CCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
.||..|.|. ...++|+..+++++|..+|...+.|++++|.+
T Consensus 1 ~CP~~C~C~------~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i 41 (192)
T 1w8a_A 1 DCPAMCHCE------GTTVDCTGRGLKEIPRDIPLHTTELLLNDNEL 41 (192)
T ss_dssp CCCTTSEEE------TTEEECTTSCCSSCCSCCCTTCSEEECCSCCC
T ss_pred CcCCCCEEC------CCEEEcCCCCcCcCccCCCCCCCEEECCCCcC
Confidence 489999997 36799999999999999999999999999976
No 38
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=94.47 E-value=0.033 Score=49.80 Aligned_cols=43 Identities=35% Similarity=0.666 Sum_probs=38.5
Q ss_pred CCCCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 88 RMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 88 ~~~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
...||..|.|. ...++|+..+++.+|..+|...+.|+|++|.+
T Consensus 9 ~~~Cp~~C~C~------~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l 51 (361)
T 2xot_A 9 VVSCPANCLCA------SNILSCSKQQLPNVPQSLPSYTALLDLSHNNL 51 (361)
T ss_dssp CTTCCTTCEEE------TTEEECCSSCCSSCCSSCCTTCSEEECCSSCC
T ss_pred CCCCCCCCEEC------CCEEEeCCCCcCccCccCCCCCCEEECCCCCC
Confidence 46799999997 36899999999999999999999999999975
No 39
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=94.46 E-value=0.034 Score=46.18 Aligned_cols=44 Identities=30% Similarity=0.720 Sum_probs=37.8
Q ss_pred CCCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCCCc
Q psy11469 89 MSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQA 138 (267)
Q Consensus 89 ~~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~Da 138 (267)
..||..|+|. ...++|+..+++++|..+|...+.|++++|.+..
T Consensus 3 ~~CP~~C~C~------~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~ 46 (220)
T 2v70_A 3 LACPEKCRCE------GTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTV 46 (220)
T ss_dssp -CCCTTCEEE------TTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE
T ss_pred CCCCCCCEEC------CCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCc
Confidence 4699999997 2479999999999999999999999999997643
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=93.85 E-value=0.061 Score=46.00 Aligned_cols=44 Identities=27% Similarity=0.689 Sum_probs=37.8
Q ss_pred CCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
.||..|.|+... ...++|++.+++.+|..+|...+.|++++|.+
T Consensus 1 ~CP~~C~C~~~~---~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i 44 (285)
T 1ozn_A 1 PCPGACVCYNEP---KVTTSCPQQGLQAVPVGIPAASQRIFLHGNRI 44 (285)
T ss_dssp CCCTTCEEECSS---SCEEECCSSCCSSCCTTCCTTCSEEECTTSCC
T ss_pred CcCCCceECCCC---CeEEEcCcCCcccCCcCCCCCceEEEeeCCcC
Confidence 489999998532 25799999999999999999999999999865
No 41
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=93.83 E-value=0.093 Score=42.99 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=49.2
Q ss_pred cCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHHHHHHHHHHhhcCCCcEEEEEcC
Q psy11469 171 HRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLP 234 (267)
Q Consensus 171 ~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e~~~a~~~~~~~~~~~lI~v~~~ 234 (267)
.||-..++..+-..+.+-|.+|+.+|+++|++...+.|.+.|++.|.. +.+.+||.|-.+
T Consensus 59 vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~----~~~~PII~Vy~~ 118 (189)
T 3hyn_A 59 VRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG----TKGLPVIVIYPD 118 (189)
T ss_dssp TTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT----TTCCCEEEEETT
T ss_pred ccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH----hcCCcEEEEECC
Confidence 355555333788999999999999999999999999999999999973 246788887766
No 42
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=92.48 E-value=0.12 Score=40.92 Aligned_cols=40 Identities=28% Similarity=0.634 Sum_probs=35.3
Q ss_pred CCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 91 cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
||..|+|. ...++|+..+++.+|..++...+.|++++|.+
T Consensus 1 Cp~~C~C~------~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l 40 (177)
T 2o6r_A 1 CPSRCSCS------GTEIRCNSKGLTSVPTGIPSSATRLELESNKL 40 (177)
T ss_dssp CCTTCEEE------TTEEECCSSCCSSCCTTCCTTCSEEECCSSCC
T ss_pred CcCCCEeC------CCEEEecCCCCccCCCCCCCCCcEEEeCCCcc
Confidence 78999996 35688999999999999999999999999875
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=92.42 E-value=0.11 Score=47.75 Aligned_cols=43 Identities=23% Similarity=0.502 Sum_probs=37.4
Q ss_pred CCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
.||..|.|... | ..++|...+++.+|..+|...+.|+|++|.+
T Consensus 2 ~Cp~~C~C~~~--~--~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l 44 (477)
T 2id5_A 2 GCPPRCECSAQ--D--RAVLCHRKRFVAVPEGIPTETRLLDLGKNRI 44 (477)
T ss_dssp CCSTTCEEETT--T--TEEECCSCCCSSCCSCCCTTCSEEECCSSCC
T ss_pred cccCCCeECCC--C--CEEEeCCCCcCcCCCCCCCCCcEEECCCCcc
Confidence 59999999842 2 4799999999999999999999999999965
No 44
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=92.03 E-value=0.14 Score=41.60 Aligned_cols=40 Identities=28% Similarity=0.601 Sum_probs=35.3
Q ss_pred CCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 91 cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
||..|.|. | ..++|...+++.+|..+|...+.|++++|.+
T Consensus 1 Cp~~C~C~----~--~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l 40 (208)
T 2o6s_A 1 CPSRCSCS----G--TTVECYSQGRTSVPTGIPAQTTYLDLETNSL 40 (208)
T ss_dssp CCTTCEEE----T--TEEECCSSCCSSCCSCCCTTCSEEECCSSCC
T ss_pred CcCCCEEC----C--CEEEecCCCccCCCCCCCCCCcEEEcCCCcc
Confidence 78999996 2 5789999999999999999999999999865
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=91.93 E-value=0.13 Score=44.25 Aligned_cols=40 Identities=28% Similarity=0.610 Sum_probs=35.3
Q ss_pred CCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 91 cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
||..|.|. | ..++|...+++.+|..+|...+.|++++|.+
T Consensus 1 CP~~C~C~----~--~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l 40 (306)
T 2z66_A 1 CPSRCSCS----G--TEIRCNSKGLTSVPTGIPSSATRLELESNKL 40 (306)
T ss_dssp CCTTCEEE----T--TEEECCSSCCSSCCSCCCTTCCEEECCSSCC
T ss_pred CcCCCeeC----C--CEEEcCCCCcccCCCCCCCCCCEEECCCCcc
Confidence 78999996 2 4689999999999999999999999999865
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=90.98 E-value=0.18 Score=46.05 Aligned_cols=45 Identities=22% Similarity=0.471 Sum_probs=38.1
Q ss_pred CCCCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 88 RMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 88 ~~~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
...||..|.|... ...|+|...+++++|..+|.+.+.|+|++|.+
T Consensus 32 ~~~Cp~~C~C~~~----~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i 76 (440)
T 3zyj_A 32 AQTCPSVCSCSNQ----FSKVICVRKNLREVPDGISTNTRLLNLHENQI 76 (440)
T ss_dssp -CCCCSSSEECTT----SCEEECCSCCCSSCCSCCCTTCSEEECCSCCC
T ss_pred cccCCCCCEeCCC----CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcC
Confidence 4569999999732 35789999999999999999999999999965
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=90.83 E-value=0.19 Score=47.26 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=33.3
Q ss_pred ccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 93 FNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 93 ~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
..|.|... ...++|+.+++++||..+|.+++.|+|++|.+
T Consensus 25 ~~c~~~~~----~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i 64 (635)
T 4g8a_A 25 EPCVEVVP----NITYQCMELNFYKIPDNLPFSTKNLDLSFNPL 64 (635)
T ss_dssp CCSEEEET----TTEEECTTSCCSSCCSSSCTTCCEEECTTSCC
T ss_pred CCccccCC----CCEEECCCCCcCccCCCCCcCCCEEEeeCCCC
Confidence 35666632 35789999999999999999999999999965
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=90.64 E-value=0.21 Score=45.81 Aligned_cols=45 Identities=24% Similarity=0.510 Sum_probs=38.0
Q ss_pred CCCCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 88 RMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 88 ~~~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
...||..|.|... ...++|.+.+++.+|..+|.+.+.|+|++|.+
T Consensus 43 ~~~Cp~~C~C~~~----~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i 87 (452)
T 3zyi_A 43 PQNCPSVCSCSNQ----FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNI 87 (452)
T ss_dssp -CCCCTTSEECSS----SCEEECCSSCCSSCCSCCCTTCSEEECCSSCC
T ss_pred cCCCCCCCEECCC----CcEEEECCCCcCccCCCCCCCccEEECcCCcC
Confidence 4569999999732 35789999999999999999999999999965
No 49
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=90.39 E-value=1.1 Score=35.77 Aligned_cols=83 Identities=12% Similarity=0.002 Sum_probs=55.7
Q ss_pred cCCCC-HHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecC--CcccccCcHHHHHHHHH
Q psy11469 142 YSLKD-EPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSR--AFIYGDWSRPEFKSALN 218 (267)
Q Consensus 142 y~~~D-~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~--~fl~s~w~~~e~~~a~~ 218 (267)
|+..+ .+|.. .+...|++ .|+.+++...+-.+....+.++=.++|++|+-+|++++| .--.+.=..+|+-.|..
T Consensus 20 F~~~e~~~~~~-~l~~~l~~--~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~A 96 (161)
T 2f62_A 20 FNPDMGASYYN-KVRELLKK--ENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAA 96 (161)
T ss_dssp GSTTTTHHHHH-HHHHHHHT--TTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHHHHHH--CCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHH
Confidence 47777 88887 79999988 489887755433222214555557899999999999996 22223336677777765
Q ss_pred HHhhcCCCcEEEEE
Q psy11469 219 GSLMRHRKPLFIIM 232 (267)
Q Consensus 219 ~~~~~~~~~lI~v~ 232 (267)
.+++||.+.
T Consensus 97 -----lgKPVi~l~ 105 (161)
T 2f62_A 97 -----LNKMVLTFT 105 (161)
T ss_dssp -----TTCEEEEEC
T ss_pred -----CCCEEEEEE
Confidence 355665543
No 50
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=86.79 E-value=0.51 Score=40.03 Aligned_cols=25 Identities=24% Similarity=0.763 Sum_probs=21.9
Q ss_pred CCeEEecCCCcccccC-chHHHHHHh
Q psy11469 1 MPKFFLGENPFECDCK-MEWLQRAHE 25 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~-l~wl~~w~~ 25 (267)
|++|+|++|||.|+|. +.||..|..
T Consensus 207 L~~L~l~~N~~~~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 207 LQYIWLHDNPWDCTCPGIRYLSEWIN 232 (272)
T ss_dssp CCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred CCEEEccCCCccccCcHHHHHHHHHH
Confidence 6889999999999995 788888875
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=86.50 E-value=0.6 Score=40.64 Aligned_cols=43 Identities=30% Similarity=0.638 Sum_probs=36.9
Q ss_pred CCCCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 88 RMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 88 ~~~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
...||..|.|. ...++|+..+++.+|..++...+.|++++|.+
T Consensus 24 ~~~cp~~c~c~------l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i 66 (332)
T 2ft3_A 24 SAMCPFGCHCH------LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDI 66 (332)
T ss_dssp -CCCCSSCEEE------TTEEECCSSCCSSCCSCCCTTCCEEECCSSCC
T ss_pred cCCCCCCCccc------CCEEECCCCCccccCCCCCCCCeEEECCCCcC
Confidence 34589999997 56799999999999999998999999999865
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=85.62 E-value=0.72 Score=40.04 Aligned_cols=43 Identities=30% Similarity=0.662 Sum_probs=37.3
Q ss_pred CCCCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 88 RMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 88 ~~~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
...||..|.|. ...++|+..+++.+|..+|+..+.|++++|.+
T Consensus 22 ~~~cp~~c~c~------l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i 64 (330)
T 1xku_A 22 GPVCPFRCQCH------LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKI 64 (330)
T ss_dssp CCCCCTTCEEE------TTEEECTTSCCCSCCCSCCTTCCEEECCSSCC
T ss_pred cCCCCCCCcCC------CeEEEecCCCccccCccCCCCCeEEECCCCcC
Confidence 34689999997 56899999999999999999999999999865
No 53
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=84.37 E-value=0.57 Score=41.01 Aligned_cols=39 Identities=18% Similarity=0.487 Sum_probs=31.6
Q ss_pred CCccc-eeeecCCCceeEEEcCcc-cccccCCCCCCC--cceecccC-CCC
Q psy11469 91 CPFNC-TCYNDQAWTTNIVDCSNS-QYNHVPLFVPMD--ATTIYLDD-TPC 136 (267)
Q Consensus 91 cp~~c-~c~~~~~w~~~~v~C~~~-gl~~ip~~~p~~--~~~L~L~~-n~~ 136 (267)
||..| .|. ...++|++. +++++|. ++.. .+.|+|++ |.+
T Consensus 1 cp~~c~~C~------~~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l 44 (347)
T 2ifg_A 1 CPDACCPHG------SSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHL 44 (347)
T ss_dssp CCSSSCCSS------SSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSC
T ss_pred CCCcCcccc------CCEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCC
Confidence 78888 885 246799999 9999999 8854 78899986 865
No 54
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=84.28 E-value=0.63 Score=38.42 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=32.9
Q ss_pred CCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
.||..|.|.. |....|+|.. ++++|. +|...+.|++++|.+
T Consensus 3 ~cp~~C~C~~---~~~~~v~c~~--l~~ip~-~~~~l~~L~l~~n~l 43 (239)
T 2xwt_C 3 CSSPPCECHQ---EEDFRVTCKD--IQRIPS-LPPSTQTLKLIETHL 43 (239)
T ss_dssp CCSSSCSEEE---CSTTEEEECS--CSSCCC-CCTTCCEEEEESCCC
T ss_pred CCCCCCeeCC---CCcceeEccC--ccccCC-CCCcccEEEEeCCcc
Confidence 4889999974 3356788986 889999 888888999988865
No 55
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=84.28 E-value=2.4 Score=33.87 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=62.8
Q ss_pred eecccCCCCCceeecCCCCHHHHHHhhhhccCCCCCceEEEEecCCCCC----Cc---ccHHHHHHHHHHhcCEEEEEec
Q psy11469 128 TIYLDDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNP----NL---ISTADFVTNSIERSEKVIMVLS 200 (267)
Q Consensus 128 ~L~L~~n~~DaFIsy~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~----G~---~~~~~~i~~~i~~Sr~~I~VlS 200 (267)
++||-|.+ |+..+.+|.. .+...|++..+|+.++...++-.+ +. ..+.+.=.++|++|+-+|+++.
T Consensus 6 kIYLAGP~------Fs~~q~~~~~-~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld 78 (162)
T 3ehd_A 6 KIYFAGPL------FSQADLRYNA-YLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD 78 (162)
T ss_dssp EEEEESCC------SSHHHHHHHH-HHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC
T ss_pred EEEEECCC------CCHHHHHHHH-HHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC
Confidence 46666655 3666667775 688999875468999887776532 21 0355555668999999999995
Q ss_pred CCcccccCcHHHHHHHHHHHhhcCCCcEEEEEcC
Q psy11469 201 RAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLP 234 (267)
Q Consensus 201 ~~fl~s~w~~~e~~~a~~~~~~~~~~~lI~v~~~ 234 (267)
.. -.+....+|+-.|.. .+++|+.+..+
T Consensus 79 g~-~~D~Gt~~EiG~A~a-----~gkPVi~~~~D 106 (162)
T 3ehd_A 79 GP-TIDAGVASEIGVAYA-----KGIPVVALYTD 106 (162)
T ss_dssp SS-SCCHHHHHHHHHHHH-----TTCCEEEECCC
T ss_pred CC-CCCCCHHHHHHHHHH-----CCCEEEEEEcC
Confidence 32 245567788888875 34566655443
No 56
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=83.47 E-value=0.96 Score=42.64 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=34.4
Q ss_pred CCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
.|+..|.|+.. ...++|+..+++++|..+|...+.|++++|.+
T Consensus 3 ~~~~~C~~~~~----~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i 45 (606)
T 3t6q_A 3 SSDQKCIEKEV----NKTYNCENLGLNEIPGTLPNSTECLEFSFNVL 45 (606)
T ss_dssp ---CCCEEEET----TTEEECTTSCCSSCCTTSCTTCCEEECTTCCC
T ss_pred cccCceecccC----CceEECCCCCcccCcCCCCCcCcEEEccCCcc
Confidence 46778888742 34799999999999999999999999999964
No 57
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=82.43 E-value=0.97 Score=40.89 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=31.6
Q ss_pred CCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
.||..|.|. ...++|.+.+++.+|. +|...+.|++++|.+
T Consensus 3 p~~~~c~~~------~~~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i 42 (455)
T 3v47_A 3 PGTSECSVI------GYNAICINRGLHQVPE-LPAHVNYVDLSLNSI 42 (455)
T ss_dssp ----CCEEE------TTEEECCSSCCSSCCC-CCTTCCEEECCSSCC
T ss_pred CccceeEEE------ccccCcCCCCcccCCC-CCCccCEEEecCCcc
Confidence 377788887 4578899999999999 899999999999965
No 58
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=79.77 E-value=1.1 Score=37.28 Aligned_cols=43 Identities=30% Similarity=0.603 Sum_probs=34.7
Q ss_pred CCCcc--ceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 90 SCPFN--CTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 90 ~cp~~--c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
.||.. |+|... ...++|+..+++.+|..+|...+.|++++|.+
T Consensus 3 ~Cp~~~gC~C~~~----~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l 47 (251)
T 3m19_A 3 TCETVTGCTCNEG----KKEVDCQGKSLDSVPSGIPADTEKLDLQSTGL 47 (251)
T ss_dssp -CHHHHSSEEEGG----GTEEECTTCCCSSCCSCCCTTCCEEECTTSCC
T ss_pred cCCCCCceEcCCC----CeEEecCCCCccccCCCCCCCCCEEEccCCCc
Confidence 36665 889531 35799999999999999999999999998865
No 59
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.64 E-value=0.39 Score=45.78 Aligned_cols=40 Identities=15% Similarity=0.395 Sum_probs=28.7
Q ss_pred CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc
Q psy11469 1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE 48 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~ 48 (267)
|++|+|++|||.|+|-..|+..|.. . ........|..+..
T Consensus 347 L~~L~l~~N~~~~~~~~~~~~~~~~-----~---~~~~~~~~C~~~~~ 386 (597)
T 3oja_B 347 LKNLTLSHNDWDCNSLRALFRNVAR-----P---AVDDADQHCKIDYQ 386 (597)
T ss_dssp CSEEECCSSCEEHHHHHHHTTTCCT-----T---TBCCCCCCCCTTCE
T ss_pred CCEEEeeCCCCCChhHHHHHHHHhh-----h---ccccccccCCcchh
Confidence 6789999999999998777776642 1 12345667876554
No 60
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=75.65 E-value=2.5 Score=35.48 Aligned_cols=40 Identities=30% Similarity=0.585 Sum_probs=32.9
Q ss_pred ccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 93 FNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 93 ~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
..|.|.. . ...++|+..+++.+|..+|...+.|++++|.+
T Consensus 10 ~~C~c~~--~--~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l 49 (270)
T 2o6q_A 10 GVCSCNN--N--KNSVDCSSKKLTAIPSNIPADTKKLDLQSNKL 49 (270)
T ss_dssp CSBEEET--T--TTEEECTTSCCSSCCSCCCTTCSEEECCSSCC
T ss_pred CCCEeCC--C--CCEEEccCCCCCccCCCCCCCCCEEECcCCCC
Confidence 4577863 1 35799999999999999999999999999864
No 61
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=72.65 E-value=3.1 Score=34.14 Aligned_cols=39 Identities=33% Similarity=0.715 Sum_probs=32.3
Q ss_pred CccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 92 PFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 92 p~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
...|.|. ...|+|+..+++.+|..+|.+.+.|++++|.+
T Consensus 14 ~~~~~Cs------~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i 52 (229)
T 3e6j_A 14 PSQCSCS------GTTVDCRSKRHASVPAGIPTNAQILYLHDNQI 52 (229)
T ss_dssp CTTCEEE------TTEEECTTSCCSSCCSCCCTTCSEEECCSSCC
T ss_pred CCCCEEe------CCEeEccCCCcCccCCCCCCCCCEEEcCCCcc
Confidence 3466775 34699999999999999999999999999865
No 62
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=70.62 E-value=24 Score=27.99 Aligned_cols=96 Identities=14% Similarity=-0.006 Sum_probs=61.5
Q ss_pred ceecccCCCCCceeecCCCCHHHHHHhhhhccCCCCCceEEEEecCCC---------CCC---c----ccHHHHHHHHHH
Q psy11469 127 TTIYLDDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDL---------NPN---L----ISTADFVTNSIE 190 (267)
Q Consensus 127 ~~L~L~~n~~DaFIsy~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~---------~~G---~----~~~~~~i~~~i~ 190 (267)
.++||-|-+ |+..+.++.. ++...|++...|+.++...++- ..| . ..+.+.=.++|+
T Consensus 8 ~kIYLAGP~------F~~~~~~~~~-~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~ 80 (167)
T 1s2d_A 8 GKIYLGSPF------YSDAQRERAA-KAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGIS 80 (167)
T ss_dssp EEEEEECCC------SSHHHHHHHH-HHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCC------CCHHHHHHHH-HHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHH
Confidence 367888864 3555566665 7899998843378887766532 112 1 033444456899
Q ss_pred hcCEEEEEecCCcccccCcHHHHHHHHHHHhhcCCCcEEEEE-cCC
Q psy11469 191 RSEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIM-LPP 235 (267)
Q Consensus 191 ~Sr~~I~VlS~~fl~s~w~~~e~~~a~~~~~~~~~~~lI~v~-~~~ 235 (267)
+|+-+|+++...-..+ =..+|+-.|.. .+++||.+. .++
T Consensus 81 ~aD~vVA~ldg~~~D~-GTa~EiGyA~a-----lgKPVv~l~~~~d 120 (167)
T 1s2d_A 81 NATCGVFLYDMDQLDD-GSAFXIGFMRA-----MHKPVILVPFTEH 120 (167)
T ss_dssp HCSEEEEEEESSSCCH-HHHHHHHHHHH-----TTCCEEEEEECSC
T ss_pred hCCEEEEECCCCCCCC-CceeehhhHhh-----CCCeEEEEEecCC
Confidence 9999999998754433 35677777765 356777764 454
No 63
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=69.15 E-value=9.1 Score=29.06 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=30.9
Q ss_pred CCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHHHHHHHHHHhh
Q psy11469 175 NPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFKSALNGSLM 222 (267)
Q Consensus 175 ~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e~~~a~~~~~~ 222 (267)
.||. .+.+.+.+.|++|++.|.+.++.| .+ .++..|+.++.+
T Consensus 10 ~p~~-~~~~~~~~~i~~A~~~I~i~~~~~-~~----~~i~~aL~~a~~ 51 (155)
T 1byr_A 10 SPEG-SARVLVLSAIDSAKTSIRMMAYSF-TA----PDIMKALVAAKK 51 (155)
T ss_dssp ETTT-HHHHHHHHHHHHCSSEEEEEESSB-CC----HHHHHHHHHHHH
T ss_pred CCCC-cHHHHHHHHHHHHhhEEEEEEEEe-CC----HHHHHHHHHHHH
Confidence 3677 888999999999999999998876 33 355556655443
No 64
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=62.91 E-value=4.7 Score=38.49 Aligned_cols=31 Identities=26% Similarity=0.480 Sum_probs=28.1
Q ss_pred eEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 106 NIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 106 ~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
..++|++++++.+|..+|...+.|.+++|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l 37 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLPTNITVLNLTHNQL 37 (680)
T ss_dssp SEEECCSSCCSSCCSCSCTTCSEEECCSSCC
T ss_pred CeeECCCCCccccccccCCCCcEEECCCCCC
Confidence 5799999999999999999999999999864
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=58.48 E-value=8.8 Score=31.97 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=26.9
Q ss_pred eEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 106 NIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 106 ~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
..++|...+++++|..+|...+.|++++|.+
T Consensus 10 ~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l 40 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPL 40 (276)
T ss_dssp TEEECTTSCCSSCCSSSCTTCCEEECTTCCC
T ss_pred ceEEecCCCccccCCCCCCCccEEECCCCcc
Confidence 4788999999999999998888999988865
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=57.44 E-value=9.6 Score=35.16 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=31.0
Q ss_pred ceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 95 CTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 95 c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
|+|... ...++|++.+++.+|..+|...+.|++++|.+
T Consensus 3 c~~~~~----~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l 40 (570)
T 2z63_A 3 CVEVVP----NITYQCMELNFYKIPDNLPFSTKNLDLSFNPL 40 (570)
T ss_dssp SEEEET----TTEEECCSSCCSSCCSSSCSSCCEEECCSCCC
T ss_pred ccccCC----CcEEEeCCCCccccCCCccccccEEEccCCcc
Confidence 555542 34689999999999999999999999999864
No 67
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=56.81 E-value=7.2 Score=36.49 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=31.7
Q ss_pred ceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 95 CTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 95 c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
|.|... ...++|++.+++.+|..+|...+.|++++|.+
T Consensus 7 c~~~~~----~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l 44 (606)
T 3vq2_A 7 CIEVVP----NITYQCMDQKLSKVPDDIPSSTKNIDLSFNPL 44 (606)
T ss_dssp CEEEET----TTEEECTTSCCSSCCTTSCTTCCEEECTTSCC
T ss_pred ceecCC----CCceEccCCCcccCCCCCCCCcCEEECCCCCc
Confidence 566432 35799999999999999999999999999965
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=54.80 E-value=12 Score=31.86 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=29.1
Q ss_pred eeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 105 TNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 105 ~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
...++|+..+++.+|..+|...+.|++++|.+
T Consensus 12 l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l 43 (290)
T 1p9a_G 12 HLEVNCDKRNLTALPPDLPKDTTILHLSENLL 43 (290)
T ss_dssp CCEEECTTSCCSSCCSCCCTTCCEEECTTSCC
T ss_pred ccEEECCCCCCCcCCCCCCCCCCEEEcCCCcC
Confidence 56789999999999999999999999999976
No 69
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=51.20 E-value=7.1 Score=38.67 Aligned_cols=31 Identities=16% Similarity=0.058 Sum_probs=28.0
Q ss_pred eeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 105 TNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 105 ~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
...++|+..+++.+|. +|...+.|+|++|.+
T Consensus 6 ~~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i 36 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ-VLNTTERLLLSFNYI 36 (844)
T ss_dssp TEEEEESCCCSSCCCS-SCTTCCEEEEESCCC
T ss_pred ceEEEccCCCCCCCCC-CCCCcCEEECCCCcC
Confidence 4689999999999999 999999999999975
No 70
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=48.57 E-value=14 Score=32.07 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=27.3
Q ss_pred CCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 91 cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
++..|.|. | ....+|+..+++++|..++...+.|++++|.+
T Consensus 24 ~~~~~~C~----~-~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i 64 (353)
T 2z80_A 24 NQASLSCD----R-NGICKGSSGSLNSIPSGLTEAVKSLDLSNNRI 64 (353)
T ss_dssp ---CCEEC----T-TSEEECCSTTCSSCCTTCCTTCCEEECTTSCC
T ss_pred CccCCCCC----C-CeEeeCCCCCcccccccccccCcEEECCCCcC
Confidence 45555554 2 22366888888888888888888888888754
No 71
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=47.43 E-value=13 Score=34.65 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=28.6
Q ss_pred eeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 105 TNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 105 ~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
...++|+..+++.+|..+|...+.|++++|.+
T Consensus 33 ~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i 64 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLPPRTKALSLSQNSI 64 (562)
T ss_dssp CCEEECTTSCCCSCCTTSCTTCCEEECCSSCC
T ss_pred CcEEEcCCCCCccCCCCCCCCcCEEECCCCCc
Confidence 36899999999999999999999999999965
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=45.76 E-value=5.1 Score=34.47 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=18.8
Q ss_pred CCeEEecCCCcccccCchHHHHH
Q psy11469 1 MPKFFLGENPFECDCKMEWLQRA 23 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~l~wl~~w 23 (267)
|+.|+|++|||.|+|-..|+..+
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTC
T ss_pred CCEEEccCCCccCcCHHHHHhcc
Confidence 68899999999999876666553
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=44.88 E-value=14 Score=34.03 Aligned_cols=26 Identities=8% Similarity=0.120 Sum_probs=17.0
Q ss_pred cCcccccccCCCCCCCcceecccCCC
Q psy11469 110 CSNSQYNHVPLFVPMDATTIYLDDTP 135 (267)
Q Consensus 110 C~~~gl~~ip~~~p~~~~~L~L~~n~ 135 (267)
|+..+++++|..++...+.|++++|.
T Consensus 12 ~~~~~l~~ip~~~~~~L~~L~Ls~n~ 37 (549)
T 2z81_A 12 GRSRSFTSIPSGLTAAMKSLDLSFNK 37 (549)
T ss_dssp CTTSCCSSCCSCCCTTCCEEECCSSC
T ss_pred CCCCccccccccCCCCccEEECcCCc
Confidence 55666677776666666666666664
No 74
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=44.00 E-value=74 Score=24.80 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=46.1
Q ss_pred CCHHHHHHhhhhccCCCCCceEEEEecCC---C-CCCc------ccHHHHHHHHHHhcCEEEEEecCCcccccCcHHHHH
Q psy11469 145 KDEPFVKQILLPGLAFKDPAVKLRVHHRD---L-NPNL------ISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFK 214 (267)
Q Consensus 145 ~D~~~v~~~L~~~Le~~~~g~~v~~~~rD---~-~~G~------~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e~~ 214 (267)
+|. |..+.+...|++ .| .|.-.+.. + ..|+ ..+.+.=.+.|++|+-+|++++ -.|.=..+|+-
T Consensus 16 e~~-~~~~~i~~~L~~--~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~d~Gt~~EiG 88 (152)
T 4fyk_A 16 EDQ-ALYARIVSRLRR--YG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QPSLGVGYELG 88 (152)
T ss_dssp TTH-HHHHHHHHHHTT--TS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SCCHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHH--cC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CCCCCHHHHHH
Confidence 344 454589999988 47 55321111 0 0111 1356666779999999999999 33444567777
Q ss_pred HHHHHHhhcCCCcEEEEEc
Q psy11469 215 SALNGSLMRHRKPLFIIML 233 (267)
Q Consensus 215 ~a~~~~~~~~~~~lI~v~~ 233 (267)
.|.. .+++|+.+.-
T Consensus 89 ~A~a-----lgkPV~~l~~ 102 (152)
T 4fyk_A 89 RAVA-----LGKPILCLFR 102 (152)
T ss_dssp HHHH-----TTCCEEEEEC
T ss_pred HHHH-----cCCeEEEEEe
Confidence 7765 3556666554
No 75
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=25.92 E-value=16 Score=35.05 Aligned_cols=31 Identities=10% Similarity=0.237 Sum_probs=16.5
Q ss_pred eeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 105 TNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 105 ~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
...+++++.+++.+|. .+...+.|++++|.+
T Consensus 63 L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l 93 (622)
T 3g06_A 63 ITTLVIPDNNLTSLPA-LPPELRTLEVSGNQL 93 (622)
T ss_dssp CSEEEECSCCCSCCCC-CCTTCCEEEECSCCC
T ss_pred CcEEEecCCCCCCCCC-cCCCCCEEEcCCCcC
Confidence 3445555555555555 334455566666643
No 76
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=25.86 E-value=76 Score=25.31 Aligned_cols=59 Identities=12% Similarity=0.072 Sum_probs=29.9
Q ss_pred cCCCCHHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccc
Q psy11469 142 YSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYG 206 (267)
Q Consensus 142 y~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s 206 (267)
|++.+..+- .|+..+++-...+.+.. .- .+.. .+.+++.+|.++-=++=+|+...+...
T Consensus 41 ~~~~~~~~~--~ll~~I~~A~~sI~i~~--y~-~~~~-~i~~aL~~aa~rGV~Vrii~D~~~~~~ 99 (196)
T 4ggj_A 41 LPHSESSLS--RLLRALLAARSSLELCL--FA-FSSP-QLGRAVQLLHQRGVRVRVITDCDYMAL 99 (196)
T ss_dssp SCCSCCHHH--HHHHHHHTCSSEEEEEE--SC-BCCH-HHHHHHHHHHHTTCEEEEEESSCCC--
T ss_pred cCCcHHHHH--HHHHHHHHhheEEEEEE--EE-eCCH-HHHHHHHHHHHcCCcEEEEEecccccc
Confidence 444444432 36666655322333333 22 2445 677777777666656655665544433
No 77
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=23.87 E-value=53 Score=29.76 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=24.2
Q ss_pred eEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469 106 NIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136 (267)
Q Consensus 106 ~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~ 136 (267)
+.++|+..+++++|..+|...+.|++++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i 33 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYI 33 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcc
Confidence 4677888888888888887777888887754
No 78
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=21.22 E-value=1.1e+02 Score=28.25 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=31.5
Q ss_pred CcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHHHHHHHHHHhhcCCCcEEEEEcCCC
Q psy11469 177 NLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPH 236 (267)
Q Consensus 177 G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e~~~a~~~~~~~~~~~lI~v~~~~i 236 (267)
|. .+.+.+.++|++|++.|.+.+--++.+.-...++..|+.+..+.+.+.=|=|+++.+
T Consensus 64 g~-~~~~~l~~~I~~Ak~~I~i~~y~~~~~d~~g~~i~~aL~~aa~rGp~V~Vril~D~~ 122 (506)
T 1v0w_A 64 TK-RLLAKMTENIGNATRTVDISTLAPFPNGAFQDAIVAGLKESAAKGNKLKVRILVGAA 122 (506)
T ss_dssp HH-HHHHHHHHHHHTCSSEEEEEEESSCCCHHHHHHHHHHHHHHHHTTCCEEEEEEEECC
T ss_pred HH-HHHHHHHHHHHHhccEEEEEEeeccCCChHHHHHHHHHHHHHhCCCCcEEEEEEeCc
Confidence 35 667777777777777777766543233222345556665544433223333445544
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.50 E-value=26 Score=32.14 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=17.2
Q ss_pred CCeEEecCCCcccccCchHHHH
Q psy11469 1 MPKFFLGENPFECDCKMEWLQR 22 (267)
Q Consensus 1 ~~~l~L~~NP~~CdC~l~wl~~ 22 (267)
|+.|+|++||+.|+|-..|+..
T Consensus 239 L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 239 LEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp CCEEECTTCCBCHHHHHHHHTT
T ss_pred CCEEEcCCCCCcCcchHHHHHh
Confidence 5789999999999976555543
Done!