RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11469
(267 letters)
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 90.2 bits (224), Expect = 1e-20
Identities = 42/238 (17%), Positives = 75/238 (31%), Gaps = 17/238 (7%)
Query: 1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIA 60
+ + N F C+C++ I AD+ +Y +L +
Sbjct: 549 LSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGC- 607
Query: 61 DSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPL 120
D + L + F +C + T + + +H
Sbjct: 608 DEEEVLKSLKFSLFIVCTV----TLTLFLMTILTVTKFRGFCFICYKTAQRLVFKDHPQG 663
Query: 121 FVPMDATTIYLDDTPCQAYVIYSLKDEPFVKQILLPGL---AFKDPAVKLRVHHRDLNPN 177
P Y D AY+ +S KD +V+ LL L L RD P
Sbjct: 664 TEPDM----YKYD----AYLCFSSKDFTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPG 715
Query: 178 LISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPP 235
+ + ++I S K++ ++SR F+ W F A L L ++++
Sbjct: 716 -ENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGS 772
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein;
2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Length = 149
Score = 81.8 bits (202), Expect = 1e-19
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
A+V YS +D +V+ +++ L +P KL +H RD D + +SIE+S K +
Sbjct: 8 AFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHG-KWIIDNIIDSIEKSHKTVF 66
Query: 198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQ 255
VLS F+ +W + E + + +I+L P +P L ++
Sbjct: 67 VLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKA--IPQRFXKLRKIMN 122
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity,
immune response, leucine-rich repeat, glycoprotein,
transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Length = 178
Score = 78.8 bits (194), Expect = 3e-18
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Query: 132 DDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIER 191
+ A++ YS D +VK L+P L +D ++ + ++ +P S ++ + + IE+
Sbjct: 32 RNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPG-KSISENIVSFIEK 90
Query: 192 SEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLS 251
S K I VLS F+ +W EF A + + + +I+L P +P + L
Sbjct: 91 SYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYC--IPTRYHKLK 148
Query: 252 VLLQDN 257
LL+
Sbjct: 149 ALLEKK 154
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR
domain, TLRS adaptor, immune system; 2.40A {Homo
sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Length = 146
Score = 76.6 bits (189), Expect = 1e-17
Identities = 13/102 (12%), Positives = 38/102 (37%), Gaps = 2/102 (1%)
Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
V +S +D + L+ L +++ + RD P + + ++ S ++
Sbjct: 13 VCVCHSEEDLVAAQD-LVSYLEGSTASLRCFLQLRDATPG-GAIVSELCQALSSSHCRVL 70
Query: 198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNI 239
+++ F+ W + + AL + + ++ +
Sbjct: 71 LITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAY 112
>2js7_A Myeloid differentiation primary response protein MYD88;
MYD88_human, TIR domain, TOLL like receptor adaptor
domain, innate immune signaling; NMR {Homo sapiens} PDB:
2z5v_A
Length = 160
Score = 72.5 bits (178), Expect = 6e-16
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIER-SEKVI 196
A++ Y D FV++++ L + +KL V RD+ P + IE+ +++
Sbjct: 19 AFICYCPSDIQFVQEMI-RQLEQTNYRLKLCVSDRDVLPG-TCVWSIASELIEKRCRRMV 76
Query: 197 MVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPP 235
+V+S ++ + K AL+ S H+K L I
Sbjct: 77 VVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKA 115
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR,
IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo
sapiens}
Length = 159
Score = 56.6 bits (136), Expect = 3e-10
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 14/110 (12%)
Query: 138 AYVIYSLKD-----------EPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVT 186
AY+ Y+ D E F +IL L K KL + RDL P + + V
Sbjct: 5 AYLSYTKVDPDQWNQETGEEERFALEILPDMLE-KHYGYKLFIPDRDLIPT-GTYIEDVA 62
Query: 187 NSIERSEKVIMVLSRAFIY-GDWSRPEFKSALNGSLMRHRKPLFIIMLPP 235
+++S+++I+V++ ++ WS E ++ L L+ + +I
Sbjct: 63 RCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSE 112
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 3e-06
Identities = 43/264 (16%), Positives = 82/264 (31%), Gaps = 75/264 (28%)
Query: 38 LESLYCRMVYEENLITYDNI---FIADSSKFLCDYEEHCFSLCRCCEYGACD-------- 86
E L R +Y+ TY + I S++ L + + G +
Sbjct: 170 FEEL--RDLYQ----TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG-LNILEWLENP 222
Query: 87 -----------CRMSCPFNC----TCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYL 131
+SCP Y +V + L + T +
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHY--------VVTAKLLGFTPGELRSYLKGATGHS 274
Query: 132 DDTPCQAYVIYSLKD-EPFVKQILLP-GLAFKDPAVKLRVHHRDLNPNLISTADFVTNSI 189
A I E F + + F + +R + PN + +S+
Sbjct: 275 QGLVT-AVAIAETDSWESFFVSVRKAITVLFF---IGVRCYEA--YPNTSLPPSILEDSL 328
Query: 190 ERSEKVI--MV----LSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNI---- 239
E +E V M+ L++ + ++ + N L ++ + I S +
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQ------DYVNKTNSHLPAGKQ-VEI------SLVNGAK 375
Query: 240 -LVIM--PMSIYHLSVLLQDNQAS 260
LV+ P S+Y L++ L+ +A
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAP 399
Score = 32.3 bits (73), Expect = 0.16
Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 36/151 (23%)
Query: 135 PCQAYVIYS-LKDEPFVKQILLP--GLAFKD-PAVKLRVHHRDLNPNLISTADFVTNSIE 190
P ++ I S L+++ F K + P G A D P + + L +V++ +E
Sbjct: 23 PTASFFIASQLQEQ-FNKILPEPTEGFAADDEPTTPAELVGKFL--------GYVSSLVE 73
Query: 191 RSE--KVIMVLSRAFIYGDWSRPEFKSA-LNG----SLMRHRKPLFIIMLPPHSNIL--- 240
S+ + VL+ EF++ L G +L L ++
Sbjct: 74 PSKVGQFDQVLNLCLT-------EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 241 ------VIMPMSIYHLSVLLQDNQASGNSIF 265
P S L + +
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 43.6 bits (103), Expect = 4e-05
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 73 CFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLD 132
+ LC A +CP C+C N + V C+ + VP +P + + L
Sbjct: 28 VWILCAAIAAAASAGPQNCPSVCSCSNQ----FSKVVCTRRGLSEVPQGIPSNTRYLNLM 83
Query: 133 D 133
+
Sbjct: 84 E 84
Score = 33.6 bits (77), Expect = 0.063
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 6 LGENPFECDCKMEWLQR 22
L NP+ CDC + WL
Sbjct: 297 LHHNPWNCDCDILWLAW 313
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 8e-05
Identities = 40/262 (15%), Positives = 89/262 (33%), Gaps = 51/262 (19%)
Query: 19 WLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIADSSKFLC------DYEEH 72
W + I + LE R +++ + + I + L +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--PTILLSLIWFDVIKSDV 404
Query: 73 CFSLCRCCEYGACDCR----------MSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFV 122
+ + +Y + + + N+ A +IVD YN F
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD----HYNIPKTFD 460
Query: 123 PMDATTIYLDDTPCQAYVIYSLKD-EPFVKQILLPGLAFKD---PAVKLRVHHRDLNPNL 178
D YLD ++ + LK+ E + L + F D K+R H N
Sbjct: 461 SDDLIPPYLDQYFYS-HIGHHLKNIEHPERMTLFRMV-FLDFRFLEQKIR--HDSTAWNA 516
Query: 179 ISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSN 238
+ + N++++ + + +I + P+++ +N +++ F LP
Sbjct: 517 SGS---ILNTLQQLKFY-----KPYICDN--DPKYERLVN-AILD-----F---LPKIEE 557
Query: 239 ILVIMP-MSIYHLSVLLQDNQA 259
L+ + ++ L+ +++A
Sbjct: 558 NLICSKYTDLLRIA-LMAEDEA 578
Score = 37.9 bits (87), Expect = 0.003
Identities = 19/147 (12%), Positives = 40/147 (27%), Gaps = 41/147 (27%)
Query: 104 TTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQAYVIYSLKDEPFV---------KQIL 154
T ++ + YN +F + + + QA + L+ V K +
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA--LLELRPAKNVLIDGVLGSGKTWV 166
Query: 155 LPGLAFKDPAVKLR----VH--------------------HRDLNPNLISTADFVTNSIE 190
V+ + + ++PN S +D +N
Sbjct: 167 A-LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 191 RSEKVIMVLSRAFIYGDWSRPEFKSAL 217
R + L R +++ L
Sbjct: 226 RIHSIQAELRRLL-----KSKPYENCL 247
Score = 35.6 bits (81), Expect = 0.015
Identities = 22/151 (14%), Positives = 53/151 (35%), Gaps = 36/151 (23%)
Query: 97 CYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQAYVIYSLKDEP------FV 150
C + Q +I+ S + +H+ + + + ++L + FV
Sbjct: 35 CKDVQDMPKSIL--SKEEIDHI-IMSKDAVSGTL--------RLFWTLLSKQEEMVQKFV 83
Query: 151 KQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSR 210
+++L F + + P+++ T ++ +R V ++ + SR
Sbjct: 84 EEVLRINYKF----LMSPIKTEQRQPSMM-TRMYIE-QRDRLYNDNQVFAKYNV----SR 133
Query: 211 PEFKSALNGSLMRHRKPLFIIMLPPHSNILV 241
+ L +L+ L P N+L+
Sbjct: 134 LQPYLKLRQALLE---------LRPAKNVLI 155
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 40.4 bits (95), Expect = 2e-04
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
CP CTC N NIVDC +P +P T I L+
Sbjct: 4 HCPAACTCSN------NIVDCRGKGLTEIPTNLPETITEIRLEQ 41
Score = 31.2 bits (71), Expect = 0.29
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 5 FLGENPFECDCKMEWLQ---RAHEIHKDGI 31
L +NPF CDC ++WL + I G
Sbjct: 158 HLAQNPFICDCHLKWLADYLHTNPIETSGA 187
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 39.3 bits (92), Expect = 8e-04
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
CP C C V C ++ VP +P + + L
Sbjct: 2 GCPPRCECS----AQDRAVLCHRKRFVAVPEGIPTETRLLDLGK 41
Score = 34.7 bits (80), Expect = 0.026
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 6 LGENPFECDCKMEWLQR 22
L NP CDC++ W+ R
Sbjct: 327 LDSNPLACDCRLLWVFR 343
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 38.8 bits (91), Expect = 9e-04
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
CP C CYN+ T C VP+ +P + I+L
Sbjct: 2 CPGACVCYNEPKVT---TSCPQQGLQAVPVGIPAASQRIFLHG 41
Score = 32.7 bits (75), Expect = 0.094
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 6 LGENPFECDCKMEWLQR 22
L +NP+ CDC+ L
Sbjct: 232 LNDNPWVCDCRARPLWA 248
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 39.2 bits (92), Expect = 9e-04
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 14/69 (20%)
Query: 90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQAYVIYSLKDEPF 149
CPF C C+ +V CS+ VP +P D + L + I +KD F
Sbjct: 24 VCPFRCQCHL------RVVQCSDLGLEKVPKDLPPDTALLDLQNNK-----ITEIKDGDF 72
Query: 150 VKQILLPGL 158
L L
Sbjct: 73 KN---LKNL 78
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 38.8 bits (91), Expect = 0.001
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
CPF C C+ +V CS+ VP + D T + L +
Sbjct: 26 MCPFGCHCHL------RVVQCSDLGLKAVPKEISPDTTLLDLQN 63
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 36.6 bits (85), Expect = 0.004
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 83 GACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
G+ +CP C C TT VDCSN + N +P +P + L++
Sbjct: 1 GSL----ACPEKCRCE----GTT--VDCSNQKLNKIPEHIPQYTAELRLNN 41
Score = 29.2 bits (66), Expect = 1.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 5 FLGENPFECDCKMEWL 20
L NPF C+C + WL
Sbjct: 159 NLLANPFNCNCYLAWL 174
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 37.0 bits (86), Expect = 0.004
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 87 CRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
+CP C+C N + V C VP + + + L +
Sbjct: 31 SAQTCPSVCSCSNQ----FSKVICVRKNLREVPDGISTNTRLLNLHE 73
Score = 32.8 bits (75), Expect = 0.094
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 6 LGENPFECDCKMEWLQR 22
L NP+ C+C + WL
Sbjct: 286 LHHNPWNCNCDILWLSW 302
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 35.8 bits (83), Expect = 0.014
Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Query: 90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYL 131
+ + C + +C N N +P +P +
Sbjct: 1 TTSSDQKCIEKE--VNKTYNCENLGLNEIPGTLPNSTECLEF 40
Score = 35.8 bits (83), Expect = 0.014
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 6 LGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYC 43
L +NP +C C + ++ + ++ D E C
Sbjct: 554 LRQNPLDCTCSNIYFLEWYKEN----MQKLEDTEDTLC 587
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 34.6 bits (80), Expect = 0.015
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
CP CTC + +V CSN +P +P D T +YLD
Sbjct: 3 RCPTECTCLD------TVVRCSNKGLKVLPKGIPRDVTELYLDG 40
Score = 27.3 bits (61), Expect = 4.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 5 FLGENPFECDCKMEWLQR 22
+G NP CDC M+WL
Sbjct: 132 AIGANPLYCDCNMQWLSD 149
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 34.8 bits (80), Expect = 0.021
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
SCP NC C + NI+ CS Q +VP +P + L
Sbjct: 11 SCPANCLCAS------NILSCSKQQLPNVPQSLPSYTALLDLSH 48
Score = 29.8 bits (67), Expect = 0.89
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 6 LGENPFECDCKMEWLQR 22
L NP ECDCK+ L
Sbjct: 196 LHNNPLECDCKLYQLFS 212
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 34.6 bits (80), Expect = 0.024
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLD 132
CP C+C + + C++ VP +P AT + L+
Sbjct: 1 CPSRCSCSGTE------IRCNSKGLTSVPTGIPSSATRLELE 36
Score = 31.5 bits (72), Expect = 0.20
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 6 LGENPFECDCKMEWL 20
L +N F C C+ +
Sbjct: 255 LTQNDFACTCEHQSF 269
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 33.1 bits (76), Expect = 0.052
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
CP C C VDC+ +P +P+ T + L+D
Sbjct: 2 CPAMCHCEG------TTVDCTGRGLKEIPRDIPLHTTELLLND 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 33.5 bits (77), Expect = 0.072
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 4 FFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYC 43
F L N C C+ + + + K + ++E + C
Sbjct: 550 FNLTNNSVACICEHQKFLQWVKEQK----QFLVNVEQMTC 585
Score = 30.0 bits (68), Expect = 0.96
Identities = 7/43 (16%), Positives = 11/43 (25%), Gaps = 4/43 (9%)
Query: 90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLD 132
C C + + + VP +P I L
Sbjct: 2 GSLNPCIEVVPN----ITYQCMDQKLSKVPDDIPSSTKNIDLS 40
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 32.3 bits (74), Expect = 0.11
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 6/45 (13%)
Query: 91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTP 135
C C+ ++ + +P P T+ L +T
Sbjct: 4 SSPPCECHQEED-----FRVTCKDIQRIPSL-PPSTQTLKLIETH 42
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 31.9 bits (73), Expect = 0.16
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
C+C N N VDCS+ + +P +P D + L
Sbjct: 8 DGGVCSCNN----NKNSVDCSSKKLTAIPSNIPADTKKLDLQS 46
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 31.9 bits (73), Expect = 0.25
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 4 FFLGENPFECDCKMEWLQR-AHEIHKDGIYPEIADLESLYC 43
L +N F C C+ + + + + + ++E + C
Sbjct: 548 LNLTQNDFACTCEHQSFLQWIKDQRQL-----LVEVERMEC 583
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens}
PDB: 3rez_A*
Length = 130
Score = 29.8 bits (67), Expect = 0.43
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 6 LGENPFECDCKMEWLQR 22
LG NP+ CDC++ L+
Sbjct: 62 LGANPWRCDCRLVPLRA 78
Score = 26.3 bits (58), Expect = 5.6
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 91 CPFNCTCYNDQAWTTNIVDCSNS--QYNHVPLFVPMDATTIYLDD 133
CP C+C +VDC + +P P+D T + L
Sbjct: 2 CPAPCSCAG------TLVDCGRRGLTWASLPTAFPVDTTELVLTG 40
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 30.4 bits (69), Expect = 0.43
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDT 134
CP C+C VDC + ++ VP +P +A +YL D
Sbjct: 13 CPSQCSCSG------TTVDCRSKRHASVPAGIPTNAQILYLHDN 50
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 29.9 bits (68), Expect = 0.47
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
CP C+C TT VDCS VP +P +YL D
Sbjct: 3 CPSQCSCSG----TT--VDCSGKSLASVPTGIPTTTQVLYLYD 39
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 30.6 bits (69), Expect = 0.48
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 91 CPF-NCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTP 135
C C C N + C S+ +P +P +A + T
Sbjct: 2 CHHRICHCSN------RVFLCQESKVTEIPSDLPRNAIELRFVLTK 41
Score = 27.1 bits (60), Expect = 5.7
Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 4/87 (4%)
Query: 9 NPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIADSSKFLCD 68
P C W ++ E+H + + + + + DN S D
Sbjct: 255 YPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDN---ESSYSRGFD 311
Query: 69 YEEHCFSLCRCCEYGACDCR-MSCPFN 94
F C E C FN
Sbjct: 312 MTYTEFDYDLCNEVVDVTCSPKPDAFN 338
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 30.7 bits (70), Expect = 0.49
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 2 PKFFLGENPFECDCK-MEWLQRAHEIHKDGIYPEIADLESLYCRM---VYEENLITYDNI 57
+ + NPF+C C+ + W I PE++ C + + +D
Sbjct: 612 TELDMRFNPFDCTCESIAWFVNWINETHTNI-PELS--SHYLCNTPPHYHGFPVRLFD-- 666
Query: 58 FIADSSKFLCDYEEH 72
+ + H
Sbjct: 667 -TSSCKDSAHHHHHH 680
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 30.5 bits (68), Expect = 0.55
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYP 33
+ + L NP C C + WLQR E G+
Sbjct: 105 LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPE 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 29.5 bits (67), Expect = 0.72
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
CP C+C + C++ VP +P AT + L+
Sbjct: 1 CPSRCSCSG------TEIRCNSKGLTSVPTGIPSSATRLELES 37
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 29.5 bits (66), Expect = 0.80
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 148 PFVKQILLPGLAFKDPAVKLRVHHRDLNP 176
P+V+ L ++ +V+ + + LNP
Sbjct: 31 PYVRVTLYDPMSGILTSVQTKTIKKSLNP 59
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 29.6 bits (67), Expect = 0.80
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDT 134
CP C+C V+C + VP +P T + L+
Sbjct: 1 CPSRCSCSG------TTVECYSQGRTSVPTGIPAQTTYLDLETN 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 30.1 bits (68), Expect = 0.82
Identities = 7/44 (15%), Positives = 11/44 (25%), Gaps = 7/44 (15%)
Query: 91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDT 134
C+ C N + VP +P + L
Sbjct: 4 GTSECSVI------GYNAICINRGLHQVPE-LPAHVNYVDLSLN 40
Score = 26.6 bits (59), Expect = 9.1
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 5 FLGENPFECDCKM-----EWLQRAHEIHKDG 30
+L NP++C C WL + + +
Sbjct: 401 WLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS 431
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 29.8 bits (67), Expect = 0.86
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 82 YGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
+ C + N+ ++VD SN HVP +P + L
Sbjct: 13 HFVCALALIVGSMTPFSNEL---ESMVDYSNRNLTHVPKDLPPRTKALSLSQ 61
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 29.7 bits (67), Expect = 0.95
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 1 MPKFFLGENPFECDCKM-EWLQR 22
+ K +L NP++C C ++L R
Sbjct: 499 LQKIWLHTNPWDCSCPRIDYLSR 521
Score = 27.4 bits (61), Expect = 5.3
Identities = 4/40 (10%), Positives = 13/40 (32%), Gaps = 7/40 (17%)
Query: 93 FNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLD 132
+C + + D + + +P + ++ L
Sbjct: 2 LSCDA-------SGVCDGRSRSFTSIPSGLTAAMKSLDLS 34
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 29.0 bits (65), Expect = 0.99
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 148 PFVKQILLPGLAFKDPAVKLRVHHRDLNP 176
P+V+ L + +V+ + + LNP
Sbjct: 43 PYVRVTLYDPMNGVLTSVQTKTIKKSLNP 71
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 28.8 bits (65), Expect = 1.2
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
CP C+C +V+C N + VP +P D ++L++
Sbjct: 6 CPSQCSC------DQTLVNCQNIRLASVPAGIPTDKQRLWLNN 42
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 29.3 bits (66), Expect = 1.3
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
C + + V+C +P +P D T ++L +
Sbjct: 4 CEVSKVASH------LEVNCDKRNLTALPPDLPKDTTILHLSE 40
Score = 28.1 bits (63), Expect = 2.8
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 5 FLGENPFECDCKMEWLQR 22
FL NP+ C+C++ + +R
Sbjct: 201 FLHGNPWLCNCEILYFRR 218
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 28.9 bits (65), Expect = 1.5
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 11/61 (18%)
Query: 73 CFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLD 132
+ E + +SC N C S+ N +P + ++ L
Sbjct: 12 GVIISLSKEESSNQASLSCDRNGIC-----------KGSSGSLNSIPSGLTEAVKSLDLS 60
Query: 133 D 133
+
Sbjct: 61 N 61
Score = 28.9 bits (65), Expect = 1.8
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 6 LGENPFECDCKM-EWLQR 22
L NP++C C ++L R
Sbjct: 308 LHTNPWDCSCPRIDYLSR 325
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 28.1 bits (63), Expect = 1.6
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 148 PFVKQILLPGLAFKDPAVKLRVHHRDLNP 176
PFVK LLP K ++ +V ++LNP
Sbjct: 49 PFVKIYLLPD---KKHKLETKVKRKNLNP 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 28.8 bits (65), Expect = 1.7
Identities = 5/39 (12%), Positives = 9/39 (23%), Gaps = 4/39 (10%)
Query: 95 CTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
C C + +P +P + L
Sbjct: 3 CVEVVP----NITYQCMELNFYKIPDNLPFSTKNLDLSF 37
Score = 26.9 bits (60), Expect = 7.8
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 5/22 (22%)
Query: 6 LGENPFECDCKM-----EWLQR 22
L NP++C C WL +
Sbjct: 231 LHTNPWDCSCPRIDYLSRWLNK 252
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 28.9 bits (65), Expect = 2.0
Identities = 5/38 (13%), Positives = 9/38 (23%), Gaps = 4/38 (10%)
Query: 95 CTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLD 132
C C + +P +P + L
Sbjct: 3 CVEVV----PNITYQCMELNFYKIPDNLPFSTKNLDLS 36
Score = 28.9 bits (65), Expect = 2.1
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 3 KFFLGENPFECDCKM-EWLQR 22
K +L NP++C C ++L R
Sbjct: 522 KIWLHTNPWDCSCPRIDYLSR 542
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 28.4 bits (64), Expect = 2.1
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 7/62 (11%)
Query: 6 LGENPFECDCKMEW---LQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIADS 62
L N F C ++ QR + K + ++ C + L Y D
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTV-KKLTGQNEEECTVPT---LGHYGAYCCEDL 299
Query: 63 SK 64
Sbjct: 300 PA 301
>3c64_A Pfemp1 variant 2 of strain MC; alpha-helical, three-helix bundle,
CD36-binding protein, cell adhesion, CD36-binding
protein,cell adhesion; HET: PG4; 2.40A {Plasmodium
falciparum}
Length = 179
Score = 28.1 bits (62), Expect = 2.1
Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 10/94 (10%)
Query: 48 EENLITYDNIFIADSSKFLCDYEEHCFSLCRCCEYG-ACDCRMSCPFNCTCYNDQAWT-- 104
E+ +++Y+ F L D + RC C C C C+ Q W
Sbjct: 1 EDKIMSYNAFFWMWVHDMLIDSIKWRDEHGRCINKDKGKTCIKGCNKKCICF--QKWVEQ 58
Query: 105 -----TNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
I D Q + + D L
Sbjct: 59 KKTEWGKIKDHFRKQKDIPKDWTHDDFLQTLLMK 92
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 27.7 bits (62), Expect = 2.3
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 148 PFVKQILLPGLAFKDPAVKLRVHHRDLNP 176
P+VK LLPG + K ++ + NP
Sbjct: 52 PYVKLHLLPGAS-KSNKLRTKTLRNTRNP 79
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 28.4 bits (63), Expect = 2.7
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 5/77 (6%)
Query: 6 LGENPFECDCKMEWLQRAHEIHKDGIYPEIA---DLESLYCRMVYEENLITYDNIFIADS 62
L N ++C+ + D LE C ++ + +IA +
Sbjct: 352 LSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALT 411
Query: 63 SKFLCDYEEHCFSLCRC 79
S + + C
Sbjct: 412 S-VVEKVQR-AQGRCSA 426
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 28.1 bits (63), Expect = 2.9
Identities = 6/43 (13%), Positives = 11/43 (25%), Gaps = 4/43 (9%)
Query: 6 LGENPFECDCKMEWLQRAHEIHKDGIYPEIA----DLESLYCR 44
L N ++C+ + D L C+
Sbjct: 346 LSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCK 388
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 27.4 bits (61), Expect = 2.9
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 148 PFVKQILLPGLAFKDPAVKLRVHHRDLNP 176
P+VK LLP K + +VH + LNP
Sbjct: 65 PYVKVFLLPD---KKKKFETKVHRKTLNP 90
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 28.0 bits (63), Expect = 3.0
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 13/40 (32%)
Query: 228 LFIIMLPPHSNI--LVIMPMSIYHLSVLLQDNQASGNSIF 265
++ ++ I +I P NQAS + IF
Sbjct: 257 VYATSRKQNTVIADTLIFPT-----------NQASPHHIF 285
>2fvz_A Inositol monophosphatase 2; inositol metabolism, structural
genomics, structural genomics consortium, SGC,
hydrolase; 2.40A {Homo sapiens} PDB: 2czh_A 2czi_A
2czk_A 2ddk_A
Length = 273
Score = 27.9 bits (63), Expect = 3.2
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 14/59 (23%)
Query: 180 STADFVTNSIERSEKVIM-VLSRAFIYGDWSRPEFK------SALNGSLMRHRKPLFII 231
S AD VT + E +I+ L F P + +A + P +II
Sbjct: 34 SAADLVTETDHLVEDLIISELRERF-------PSHRFIAEEAAASGAKCVLTHSPTWII 85
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 26.9 bits (60), Expect = 3.9
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 148 PFVKQILLPGLAFKDPAVKLRVHHRDLNP 176
P++K +LP K VK RV + L+P
Sbjct: 46 PYIKMTILPE---KKHKVKTRVLRKTLDP 71
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 27.7 bits (61), Expect = 4.4
Identities = 8/63 (12%), Positives = 14/63 (22%), Gaps = 1/63 (1%)
Query: 48 EENLITYDNIFIADSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNI 107
EE+ + Y N S + L A + + +
Sbjct: 128 EEDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYS-ARYIGGNLFTSAFTRLIV 186
Query: 108 VDC 110
C
Sbjct: 187 RRC 189
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20
specific; SET domain, S-adenosyl-L methionine; HET:
SAM; 1.75A {Homo sapiens}
Length = 232
Score = 27.4 bits (61), Expect = 4.8
Identities = 10/55 (18%), Positives = 12/55 (21%), Gaps = 10/55 (18%)
Query: 53 TYDNIFIADSSKFLCDYEEHCFSLCRCCEYGACDCRMSC----------PFNCTC 97
N I F D E C+ + C C P C
Sbjct: 23 IKVNRPIGRVQIFTADLSEIPRCNCKATDENPCGIDSECINRMLLYECHPTVCPA 77
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 27.5 bits (62), Expect = 4.9
Identities = 4/40 (10%), Positives = 11/40 (27%), Gaps = 13/40 (32%)
Query: 228 LFIIMLPPHSNI--LVIMPMSIYHLSVLLQDNQASGNSIF 265
+I P + + I P + +++
Sbjct: 219 RQVIEAPQSVDTTEITIRPT-----------ASGNAENLY 247
>3lv0_A Extragenic suppressor protein SUHB; niaid, seattle structural
genomics center for infectious disease, ssgcid, CAT
scratch disease; 1.85A {Bartonella henselae} PDB: 3luz_A
Length = 267
Score = 27.5 bits (62), Expect = 4.9
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 180 STADFVTNSIERSEKVIM-VLSRAF 203
AD+V+ + ++EK+I LS+A
Sbjct: 41 GPADYVSQADRKAEKIIFNELSKAR 65
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 27.1 bits (61), Expect = 4.9
Identities = 5/21 (23%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 228 LFIIMLPPHSNI--LVIMPMS 246
LF + +P H+ + + + P
Sbjct: 208 LFALEMPGHAMVSEIELRPTR 228
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 27.5 bits (60), Expect = 5.0
Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 4/99 (4%)
Query: 19 WLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIADSSKFLCDYEEHCFSLCR 78
L I + + E + + + L + ++ I + D E C +C
Sbjct: 105 GLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNK----DDNEECGDICP 160
Query: 79 CCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNH 117
G +C + + C +H
Sbjct: 161 GTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSH 199
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 26.6 bits (59), Expect = 5.3
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 148 PFVKQILLPGLAFKDPAVKLRVHHRDLNP 176
P+VK LLP + + + V + P
Sbjct: 56 PYVKICLLPD---QKNSKQTGVKRKTQKP 81
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 27.5 bits (60), Expect = 5.5
Identities = 19/105 (18%), Positives = 25/105 (23%), Gaps = 5/105 (4%)
Query: 57 IFIADSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYN 116
DS + D E CE G C C + DCS + +
Sbjct: 164 ALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVV--DDQAVCDCSRTGFR 221
Query: 117 HVPLFVPMDATTIYLDDTPCQAYVIYSLKDEPFVKQILLPGLAFK 161
+ Y Y L P L+FK
Sbjct: 222 GKDCSQGKEEYIATFKG---SEYFCYDLSQNPIQSSSDEITLSFK 263
>2qfl_A Inositol-1-monophosphatase; impase extragenic suppressor,
dimerization, hydrolase; 1.90A {Escherichia coli}
Length = 267
Score = 27.1 bits (61), Expect = 5.6
Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 180 STADFVTNSIERSEKVIM-VLSRAF 203
+ DFVTN + +E VI+ + +++
Sbjct: 35 GSNDFVTNVDKAAEAVIIDTIRKSY 59
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 27.0 bits (60), Expect = 5.6
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 95 CTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDT 134
CTC VDC + VP +P D + L T
Sbjct: 10 CTCNE----GKKEVDCQGKSLDSVPSGIPADTEKLDLQST 45
>2pcr_A Inositol-1-monophosphatase; bipolar disorder, struct genomics,
NPPSFA, national project on protein structural AN
functional analyses; 2.60A {Aquifex aeolicus}
Length = 264
Score = 27.1 bits (61), Expect = 6.3
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 180 STADFVTNSIERSEKVIM-VLSRAF 203
DFV+ + SE+ I V+ + F
Sbjct: 38 GEKDFVSYVDKTSEERIKEVILKFF 62
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 27.2 bits (59), Expect = 6.6
Identities = 5/48 (10%), Positives = 9/48 (18%)
Query: 69 YEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYN 116
Y + + E Y + + C Y
Sbjct: 246 YNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYE 293
>2p3n_A Inositol-1-monophosphatase; tetramer, hydrolase; 2.20A {Thermotoga
maritima} PDB: 2p3v_A*
Length = 256
Score = 26.7 bits (60), Expect = 7.0
Identities = 5/25 (20%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 180 STADFVTNSIERSEKVIM-VLSRAF 203
D VT ++++I+ + + F
Sbjct: 33 GFKDIVTEIDREAQRMIVDEIRKFF 57
>2bji_A Inositol-1(OR 4)-monophosphatase; hydrolase, aspartic proteinase
mechanism, aspartyl protease, succinimide, zymogen;
1.30A {Bos taurus} PDB: 1imb_A* 1ima_A* 1imc_A 1imd_A
1ime_A 1imf_A 2hhm_A 1awb_A
Length = 277
Score = 26.8 bits (60), Expect = 7.3
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 14/59 (23%)
Query: 180 STADFVTNSIERSEKVIM-VLSRAFIYGDWSRPEFK------SALNGSLMRHRKPLFII 231
S AD VT + ++ EK+++ + + P A + P +II
Sbjct: 38 SPADLVTATDQKVEKMLITSIKEKY-------PSHSFIGEESVAAGEKSILTDNPTWII 89
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 26.7 bits (60), Expect = 7.4
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 228 LFIIMLPPHSNI--LVIMP 244
++ LP H NI L +MP
Sbjct: 217 WWVSTLPAHVNINTLEMMP 235
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 27.1 bits (59), Expect = 7.6
Identities = 7/43 (16%), Positives = 11/43 (25%), Gaps = 5/43 (11%)
Query: 70 EEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSN 112
E C ++ C C + C DC +
Sbjct: 246 EVGCVNVTLCEGPNKFKCH-----SGECITLDKVCNMARDCRD 283
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 27.0 bits (59), Expect = 8.0
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 67 CDYEEHCFSLCRCCEYGACDCR-----MSCPFNCTCYNDQAW 103
C + +G C CR ++C Y+D W
Sbjct: 263 CAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPW 304
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 26.2 bits (58), Expect = 8.9
Identities = 3/29 (10%), Positives = 7/29 (24%)
Query: 148 PFVKQILLPGLAFKDPAVKLRVHHRDLNP 176
++ +LP + R
Sbjct: 66 VNIRVAVLPCSESTTCLFRTRPLDASDTL 94
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 26.8 bits (59), Expect = 9.2
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 106 NIVDCSNSQYNHVPLFVPMDATTIYLD 132
+VD S + HVP + T + +
Sbjct: 3 FLVDRSKNGLIHVPKDLSQKTTILNIS 29
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 25.7 bits (57), Expect = 9.9
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 148 PFVKQILLPGLAFKDPAVKLRVHHRDLNP 176
P+VK LLP K K ++ + NP
Sbjct: 42 PYVKTYLLPDTH-KTSKRKTKISRKTRNP 69
>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; 1.80A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.1
Length = 351
Score = 26.3 bits (59), Expect = 9.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 118 VPLFVPMD---ATTIY--LDDTPCQAYVIYSL--KDEPFVKQILLP 156
P VPM +TIY D + + + Y K+EPFV +LP
Sbjct: 239 TPHLVPMTRGILSTIYVKTDKSLEEIHEAYLEFYKNEPFVH--VLP 282
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.140 0.456
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,153,636
Number of extensions: 240632
Number of successful extensions: 1495
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1404
Number of HSP's successfully gapped: 179
Length of query: 267
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 175
Effective length of database: 4,133,061
Effective search space: 723285675
Effective search space used: 723285675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.7 bits)