RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11469
(267 letters)
>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 57.0 bits (137), Expect = 6e-11
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
A+V YS +D +V+ +++ L +P KL +H RD D + +SIE+S K +
Sbjct: 8 AFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIHG-KWIIDNIIDSIEKSHKTVF 66
Query: 198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQ 255
VLS F+ +W + E + + +I+L P +P L ++
Sbjct: 67 VLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKA--IPQRFCKLRKIMN 122
>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 161
Score = 50.9 bits (121), Expect = 1e-08
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
A++ YS D +VK LLP L + +++ +H R+ P S + + IE+S K I
Sbjct: 15 AFISYSGHDSFWVKNELLPNL--EKEGMQICLHERNFVPG-KSIVENIITCIEKSYKSIF 71
Query: 198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQDN 257
VLS F+ +W E A + L +I+L P +P S + L L+
Sbjct: 72 VLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQ--YSIPSSYHKLKSLMARR 129
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 35.6 bits (80), Expect = 0.004
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
CP C CYN+ T C VP+ +P + I+L
Sbjct: 2 CPGACVCYNEPKVT---TSCPQQGLQAVPVGIPAASQRIFLHG 41
Score = 25.2 bits (53), Expect = 8.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 6 LGENPFECDCKMEWL 20
L +NP+ CDC+ L
Sbjct: 232 LNDNPWVCDCRARPL 246
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 32.5 bits (72), Expect = 0.028
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQAYVIY 142
CP C C VDC+ +P +P+ T + L+D
Sbjct: 2 CPAMCHCEG------TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSD 47
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 31.5 bits (70), Expect = 0.084
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
CPF C C+ V CS+ VP +P D + L +
Sbjct: 3 VCPFRCQCH----LRV--VQCSDLGLEKVPKDLPPDTALLDLQN 40
>d1m8na_ b.81.2.1 (A:) Thermal hysteresis protein {Spruce budworm
(Choristoneura fumiferana), 7-turn isoforms [TaxId:
7141]}
Length = 120
Score = 30.1 bits (67), Expect = 0.10
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 77 CRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHV 118
C +Y + + S +C Q + T C+ SQYN +
Sbjct: 37 CTRSQYSDANVKKSVTTDCNIDKSQVYLTT---CTGSQYNGI 75
>d1l0sa_ b.81.2.1 (A:) Thermal hysteresis protein {Spruce budworm
(Choristoneura fumiferana), 5-turn isoforms [TaxId:
7141]}
Length = 88
Score = 27.3 bits (60), Expect = 0.69
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 87 CRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHV 118
C S NC + + T C+ S+++ V
Sbjct: 15 CEKSTLTNCYVDKSEVFGTT---CTGSRFDGV 43
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 28.1 bits (61), Expect = 1.0
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 5 FLGENPFECDCKMEWLQRAHEIHKDGIY 32
FL NP+ C+C++ + +R + + + +Y
Sbjct: 201 FLHGNPWLCNCEILYFRRWLQDNAENVY 228
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 27.7 bits (61), Expect = 1.3
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 64 KFLCDYEEHCFSLCRCCE--YGACDCRMSCPFNCTCYND 100
+FL + + C+ C C C Y D
Sbjct: 179 EFLLERDNRAKLPKSKCKNNALYEACEKECIDPCMKYRD 217
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus
[TaxId: 1912]}
Length = 210
Score = 27.0 bits (58), Expect = 2.1
Identities = 13/126 (10%), Positives = 19/126 (15%), Gaps = 6/126 (4%)
Query: 22 RAHEIHKDGIYP-----EIADLESLYCRMVYEENLITYDNIFIADSSKFLCDYEEHCFSL 76
RA E G P + L C V E+
Sbjct: 13 RAAEWDTSGELPRDLLVRLGAD-GLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRS 71
Query: 77 CRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC 136
+ A T+ + T D
Sbjct: 72 VMTSQGMAAWTVQRLGDAGQRATFLKELTSGKLAAVGFSERQAGSDLSAMRTRVRLDGDT 131
Query: 137 QAYVIY 142
+
Sbjct: 132 AVVDGH 137
>d1j83a_ b.18.1.12 (A:) Endo-1,4-beta glucanase EngF {Clostridium
cellulovorans [TaxId: 1493]}
Length = 180
Score = 26.1 bits (57), Expect = 4.2
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 109 DCSNSQYNHVPLFVPMDATTIYLDD 133
D ++S ++ LFV ++ I LD+
Sbjct: 151 DAADSVVTNMILFVGSNSDNISLDN 175
>d1m0ja_ g.46.1.1 (A:) Metallothionein {Black rockcod (Notothenia
coriiceps) [TaxId: 8208]}
Length = 28
Score = 23.2 bits (49), Expect = 6.4
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 77 CRCCEYGACDCRMSCP-FNCTC 97
C C + G C+C SC NC+C
Sbjct: 3 CECSKSGTCNCGGSCTCTNCSC 24
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis
glycosyltransferase MurG {Escherichia coli [TaxId: 562]}
Length = 351
Score = 25.1 bits (53), Expect = 9.9
Identities = 8/103 (7%), Positives = 24/103 (23%)
Query: 15 CKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIADSSKFLCDYEEHCF 74
+ + P++A + ++ + ++ A + ++ F
Sbjct: 179 RVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEF 238
Query: 75 SLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNH 117
Y D + T A + +
Sbjct: 239 IDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDR 281
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.140 0.456
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,052,821
Number of extensions: 51044
Number of successful extensions: 314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 56
Length of query: 267
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,254,276
Effective search space: 229532508
Effective search space used: 229532508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.4 bits)