Query psy11470
Match_columns 114
No_of_seqs 122 out of 1398
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 19:17:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441|consensus 99.9 2.8E-24 6E-29 162.1 10.9 107 1-114 349-463 (571)
2 KOG4441|consensus 99.9 6.8E-24 1.5E-28 160.0 11.1 106 1-113 396-509 (571)
3 PHA02713 hypothetical protein; 99.9 3.7E-22 8.1E-27 150.4 12.9 105 2-113 321-450 (557)
4 PHA02713 hypothetical protein; 99.9 1.9E-21 4.1E-26 146.6 13.0 105 2-113 273-385 (557)
5 PHA02790 Kelch-like protein; P 99.8 4.1E-20 8.8E-25 137.4 12.7 100 2-113 288-394 (480)
6 PHA02790 Kelch-like protein; P 99.8 1.2E-19 2.5E-24 135.0 12.5 100 2-113 332-433 (480)
7 PHA03098 kelch-like protein; P 99.8 1.2E-19 2.5E-24 136.1 12.1 105 2-113 312-424 (534)
8 TIGR03548 mutarot_permut cycli 99.8 2.7E-19 5.8E-24 127.0 12.6 105 1-113 88-204 (323)
9 PLN02153 epithiospecifier prot 99.8 3.6E-19 7.7E-24 127.2 13.2 106 2-114 51-178 (341)
10 PHA03098 kelch-like protein; P 99.8 4.7E-19 1E-23 132.8 12.3 106 1-113 358-474 (534)
11 PLN02193 nitrile-specifier pro 99.8 1.2E-18 2.6E-23 129.3 13.8 106 1-114 244-362 (470)
12 PLN02153 epithiospecifier prot 99.8 1.6E-18 3.4E-23 123.9 13.5 105 2-113 102-235 (341)
13 PLN02193 nitrile-specifier pro 99.8 3E-18 6.6E-23 127.1 13.5 104 2-112 194-311 (470)
14 TIGR03547 muta_rot_YjhT mutatr 99.8 2.8E-18 6E-23 122.7 11.2 105 2-113 86-237 (346)
15 TIGR03548 mutarot_permut cycli 99.8 9.2E-18 2E-22 119.1 12.5 105 2-113 40-157 (323)
16 TIGR03547 muta_rot_YjhT mutatr 99.8 1.5E-17 3.3E-22 118.9 12.3 86 2-94 30-128 (346)
17 PRK14131 N-acetylneuraminic ac 99.7 3.7E-17 8.1E-22 118.3 11.5 105 2-113 107-258 (376)
18 KOG0379|consensus 99.7 1.4E-15 2.9E-20 113.4 11.6 106 2-114 140-260 (482)
19 PRK14131 N-acetylneuraminic ac 99.7 2.4E-15 5.3E-20 108.9 12.5 86 2-94 51-149 (376)
20 PF13964 Kelch_6: Kelch motif 99.6 6.5E-15 1.4E-19 77.9 6.4 49 22-77 1-50 (50)
21 KOG4693|consensus 99.6 2.1E-14 4.5E-19 98.9 8.2 106 2-114 45-176 (392)
22 KOG4693|consensus 99.5 4.5E-14 9.7E-19 97.3 5.7 87 2-95 106-202 (392)
23 KOG0379|consensus 99.5 3.5E-13 7.6E-18 100.6 10.9 106 2-114 89-209 (482)
24 KOG1230|consensus 99.5 2.5E-13 5.4E-18 97.9 8.2 88 1-95 154-253 (521)
25 KOG1230|consensus 99.5 6.5E-13 1.4E-17 95.8 9.4 106 2-114 99-226 (521)
26 PF01344 Kelch_1: Kelch motif; 99.4 2.2E-13 4.8E-18 70.9 4.2 46 22-74 1-47 (47)
27 PF13415 Kelch_3: Galactose ox 99.3 7.9E-12 1.7E-16 65.8 6.0 47 32-85 1-49 (49)
28 PF07646 Kelch_2: Kelch motif; 99.3 1.2E-11 2.7E-16 65.0 6.4 46 22-74 1-49 (49)
29 smart00612 Kelch Kelch domain. 99.3 6.4E-12 1.4E-16 64.9 5.1 47 34-87 1-47 (47)
30 PF13418 Kelch_4: Galactose ox 99.2 1.5E-11 3.4E-16 64.5 4.1 47 22-75 1-49 (49)
31 PF13854 Kelch_5: Kelch motif 98.9 8.6E-09 1.9E-13 52.4 5.2 39 19-57 1-41 (42)
32 PLN02772 guanylate kinase 98.8 6.4E-08 1.4E-12 70.5 8.7 67 21-94 23-96 (398)
33 COG3055 Uncharacterized protei 98.8 2.8E-08 6.1E-13 70.9 6.6 78 10-94 69-156 (381)
34 KOG4152|consensus 98.7 4.4E-08 9.6E-13 73.1 7.2 87 2-95 231-343 (830)
35 COG3055 Uncharacterized protei 98.7 4E-08 8.8E-13 70.1 6.3 105 1-113 113-265 (381)
36 PF01344 Kelch_1: Kelch motif; 98.6 8.3E-08 1.8E-12 49.6 3.9 38 76-113 1-46 (47)
37 KOG4152|consensus 98.6 5.5E-07 1.2E-11 67.4 8.8 74 13-94 187-274 (830)
38 PF13964 Kelch_6: Kelch motif 98.5 2.2E-07 4.9E-12 48.7 3.8 38 76-113 1-46 (50)
39 smart00612 Kelch Kelch domain. 98.4 3.2E-07 7E-12 46.8 3.4 32 2-33 16-47 (47)
40 PF07646 Kelch_2: Kelch motif; 98.3 9.5E-07 2.1E-11 46.1 3.9 39 76-114 1-49 (49)
41 PF13415 Kelch_3: Galactose ox 98.3 1.9E-06 4.1E-11 45.0 3.9 31 1-31 19-49 (49)
42 PF13418 Kelch_4: Galactose ox 97.9 8.4E-06 1.8E-10 42.3 2.6 38 76-113 1-47 (49)
43 PF07250 Glyoxal_oxid_N: Glyox 97.8 0.00013 2.9E-09 50.3 6.9 82 4-95 49-139 (243)
44 KOG2437|consensus 97.5 4.6E-05 9.9E-10 57.2 2.1 86 2-94 289-395 (723)
45 KOG2437|consensus 97.4 6.9E-05 1.5E-09 56.3 1.8 69 20-95 258-335 (723)
46 PLN02772 guanylate kinase 97.4 0.0012 2.5E-08 48.7 7.3 53 2-56 52-108 (398)
47 TIGR01640 F_box_assoc_1 F-box 97.3 0.0067 1.4E-07 41.1 10.6 79 2-87 71-154 (230)
48 PF13854 Kelch_5: Kelch motif 97.3 0.00061 1.3E-08 34.2 3.7 23 73-95 1-25 (42)
49 PF12768 Rax2: Cortical protei 96.8 0.038 8.2E-07 39.1 10.6 103 2-112 17-130 (281)
50 PF07893 DUF1668: Protein of u 96.2 0.24 5.2E-06 36.0 11.7 73 3-75 88-168 (342)
51 PF03089 RAG2: Recombination a 96.0 0.049 1.1E-06 38.7 7.2 72 16-94 81-174 (337)
52 TIGR01640 F_box_assoc_1 F-box 95.2 0.51 1.1E-05 31.9 9.7 79 2-87 15-103 (230)
53 PF07250 Glyoxal_oxid_N: Glyox 93.3 0.15 3.3E-06 35.4 4.0 41 2-42 92-138 (243)
54 PF05096 Glu_cyclase_2: Glutam 91.5 2.1 4.5E-05 30.2 7.8 80 1-94 68-149 (264)
55 PF08268 FBA_3: F-box associat 84.9 6.8 0.00015 24.0 7.5 62 2-70 21-87 (129)
56 PF03089 RAG2: Recombination a 84.1 6.2 0.00013 28.4 6.3 22 21-42 153-174 (337)
57 PF12768 Rax2: Cortical protei 83.0 11 0.00024 26.8 7.3 69 36-112 2-81 (281)
58 PF07893 DUF1668: Protein of u 79.4 19 0.0004 26.2 7.7 53 28-93 71-126 (342)
59 PF08268 FBA_3: F-box associat 77.1 14 0.00031 22.6 8.2 50 30-87 3-55 (129)
60 PF03178 CPSF_A: CPSF A subuni 77.0 23 0.0005 25.1 7.5 75 3-91 64-145 (321)
61 COG4257 Vgb Streptogramin lyas 73.4 20 0.00043 25.9 6.1 58 2-72 255-314 (353)
62 PF03178 CPSF_A: CPSF A subuni 67.3 42 0.00091 23.8 7.7 81 2-93 108-191 (321)
63 smart00284 OLF Olfactomedin-li 61.1 52 0.0011 23.2 6.3 35 19-58 70-104 (255)
64 KOG0316|consensus 59.2 35 0.00077 24.1 5.1 53 1-58 123-175 (307)
65 PF02191 OLF: Olfactomedin-lik 56.6 58 0.0012 22.8 5.9 36 18-58 64-99 (250)
66 PF13360 PQQ_2: PQQ-like domai 48.6 76 0.0016 20.9 10.8 56 2-71 47-105 (238)
67 KOG2321|consensus 47.2 83 0.0018 25.1 5.8 32 21-58 132-165 (703)
68 PRK11138 outer membrane biogen 42.8 1.3E+02 0.0029 22.0 9.4 78 3-95 306-386 (394)
69 PF08662 eIF2A: Eukaryotic tra 42.6 98 0.0021 20.4 7.0 51 3-58 85-135 (194)
70 KOG0316|consensus 42.2 1.2E+02 0.0027 21.5 7.8 77 3-93 83-162 (307)
71 PRK11138 outer membrane biogen 42.0 1.4E+02 0.003 21.9 9.2 57 2-72 131-189 (394)
72 PF07734 FBA_1: F-box associat 41.8 91 0.002 19.8 6.0 39 29-74 2-40 (164)
73 PF08950 DUF1861: Protein of u 40.7 1.4E+02 0.003 21.6 6.5 58 30-94 34-96 (298)
74 PF07443 HARP: HepA-related pr 39.1 14 0.0003 19.7 0.5 13 4-16 21-33 (55)
75 PF13570 PQQ_3: PQQ-like domai 37.8 49 0.0011 15.6 4.6 25 27-57 16-40 (40)
76 PF08450 SGL: SMP-30/Gluconola 36.8 1.3E+02 0.0028 20.2 7.7 54 2-73 23-78 (246)
77 PF00614 PLDc: Phospholipase D 36.1 35 0.00075 15.3 1.6 15 28-42 9-23 (28)
78 COG1520 FOG: WD40-like repeat 36.0 1.7E+02 0.0036 21.2 9.2 61 2-73 79-141 (370)
79 TIGR03300 assembly_YfgL outer 35.8 1.7E+02 0.0036 21.1 9.2 49 2-58 290-340 (377)
80 cd03476 Rieske_ArOX_small Smal 35.2 1.1E+02 0.0024 18.9 4.9 35 4-39 78-115 (126)
81 PF13088 BNR_2: BNR repeat-lik 34.9 1.1E+02 0.0024 20.8 4.7 30 11-40 194-226 (275)
82 PF09910 DUF2139: Uncharacteri 34.3 1.9E+02 0.0041 21.3 8.6 51 3-58 133-183 (339)
83 TIGR03075 PQQ_enz_alc_DH PQQ-d 33.7 2.3E+02 0.005 22.1 6.9 59 2-60 131-193 (527)
84 PF13360 PQQ_2: PQQ-like domai 32.9 1.4E+02 0.0031 19.5 9.3 57 2-71 4-64 (238)
85 TIGR03074 PQQ_membr_DH membran 31.1 3.1E+02 0.0066 22.7 9.6 58 2-69 642-718 (764)
86 smart00155 PLDc Phospholipase 29.6 60 0.0013 14.1 2.1 15 28-42 9-23 (28)
87 TIGR02377 MocE_fam_FeS Rieske 28.1 1.2E+02 0.0026 17.6 3.5 12 26-37 88-99 (101)
88 PRK09511 nirD nitrite reductas 27.4 1E+02 0.0022 18.3 3.1 32 4-37 75-106 (108)
89 PF06058 DCP1: Dcp1-like decap 27.0 78 0.0017 19.6 2.5 15 3-17 31-45 (122)
90 cd01207 Ena-Vasp Enabled-VASP- 26.4 1.6E+02 0.0035 18.0 4.9 17 2-18 10-26 (111)
91 KOG1445|consensus 25.9 92 0.002 25.4 3.2 55 2-58 743-800 (1012)
92 PRK09965 3-phenylpropionate di 25.7 1.5E+02 0.0032 17.4 3.9 33 4-37 67-99 (106)
93 PF06433 Me-amine-dh_H: Methyl 25.2 2.3E+02 0.0049 21.0 4.9 50 2-58 270-322 (342)
94 KOG2055|consensus 24.9 3.4E+02 0.0073 21.2 6.3 51 35-97 272-327 (514)
95 PF03088 Str_synth: Strictosid 24.4 1.2E+02 0.0027 17.6 2.9 16 2-17 38-53 (89)
96 KOG2321|consensus 23.4 1.8E+02 0.0038 23.4 4.2 52 2-58 156-207 (703)
97 cd03529 Rieske_NirD Assimilato 23.0 1.6E+02 0.0034 17.1 3.3 9 5-13 72-80 (103)
98 cd03548 Rieske_RO_Alpha_OMO_CA 22.6 2E+02 0.0044 17.8 4.7 36 4-39 81-123 (136)
99 PRK02888 nitrous-oxide reducta 22.2 2.6E+02 0.0057 22.6 5.1 52 2-58 297-353 (635)
100 KOG0271|consensus 21.8 3.7E+02 0.0081 20.6 5.6 41 32-77 168-218 (480)
101 TIGR02378 nirD_assim_sml nitri 21.8 1.7E+02 0.0036 17.0 3.3 32 4-37 72-103 (105)
102 cd03475 Rieske_SoxF_SoxL SoxF 21.1 2.6E+02 0.0056 18.5 4.3 35 5-39 124-160 (171)
103 PF06739 SBBP: Beta-propeller 21.0 1.2E+02 0.0025 14.4 3.3 10 32-41 23-32 (38)
104 PF13540 RCC1_2: Regulator of 20.9 1E+02 0.0022 13.7 3.1 17 24-40 8-25 (30)
105 COG4334 Uncharacterized protei 20.7 1.1E+02 0.0024 18.8 2.2 15 28-42 41-55 (131)
106 PF13806 Rieske_2: Rieske-like 20.5 1.1E+02 0.0025 18.1 2.3 32 4-37 72-103 (104)
107 PF14157 YmzC: YmzC-like prote 20.2 1.7E+02 0.0036 16.0 2.7 15 2-16 42-56 (63)
No 1
>KOG4441|consensus
Probab=99.91 E-value=2.8e-24 Score=162.12 Aligned_cols=107 Identities=33% Similarity=0.622 Sum_probs=101.5
Q ss_pred CeEEEEECCCCcEEEecCCcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCCCCCcccce
Q psy11470 1 MSIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHGL 80 (114)
Q Consensus 1 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~~r~~~ 80 (114)
+++++|||.+++|..+++|+.+|..++++++++.||++||.++...++++++|||.++ +|..+++|+.+|.++
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~-------~W~~va~m~~~r~~~ 421 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN-------KWTPVAPMLTRRSGH 421 (571)
T ss_pred ceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCC-------cccccCCCCcceeee
Confidence 4789999999999999999999999999999999999999999899999999999999 999999999999999
Q ss_pred eeEEECC--eEEeccCCce-eeccee-----cCCeEEeeeCC
Q psy11470 81 GKASLHI--YIQNVPEGLV-YHKAMS-----SRKWRIVQVKG 114 (114)
Q Consensus 81 ~~~~~~~--yv~GG~~~~~-~~~~~~-----~~~W~~~~~~g 114 (114)
+++++++ |++||.++.. ++++++ +++|+.+++|.
T Consensus 422 gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~ 463 (571)
T KOG4441|consen 422 GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN 463 (571)
T ss_pred EEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc
Confidence 9999999 9999987766 788888 99999999983
No 2
>KOG4441|consensus
Probab=99.91 E-value=6.8e-24 Score=160.02 Aligned_cols=106 Identities=30% Similarity=0.575 Sum_probs=98.6
Q ss_pred CeEEEEECCCCcEEEecCCcccccceeEEEECCEEEEEecCCCCC-CcCeEEEEeCCCCcCCcccceeEEcCCCCCcccc
Q psy11470 1 MSIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLK-TVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHG 79 (114)
Q Consensus 1 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~~r~~ 79 (114)
+++++|||.+++|+.+++|+.+|.++++++++++||++||.+... .++++++|||.++ +|+.+++|+.+|..
T Consensus 396 ~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~-------~W~~~~~M~~~R~~ 468 (571)
T KOG4441|consen 396 NSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN-------TWTLIAPMNTRRSG 468 (571)
T ss_pred ccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC-------ceeecCCccccccc
Confidence 469999999999999999999999999999999999999998766 8999999999999 99999999999999
Q ss_pred eeeEEECC--eEEeccCCceeeccee-----cCCeEEeeeC
Q psy11470 80 LGKASLHI--YIQNVPEGLVYHKAMS-----SRKWRIVQVK 113 (114)
Q Consensus 80 ~~~~~~~~--yv~GG~~~~~~~~~~~-----~~~W~~~~~~ 113 (114)
++++++++ |++||.++...++++| +++|..+++|
T Consensus 469 ~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 469 FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM 509 (571)
T ss_pred ceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence 99999999 9999998855566777 9999999876
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.89 E-value=3.7e-22 Score=150.44 Aligned_cols=105 Identities=20% Similarity=0.351 Sum_probs=93.8
Q ss_pred eEEEEECCCCcEEEecCCcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCCCCCccccee
Q psy11470 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHGLG 81 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~~r~~~~ 81 (114)
++++|||.+++|..+++||.+|..+++++++++||++||.++....+++++|||.++ +|..+++||.+|..++
T Consensus 321 ~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~-------~W~~~~~mp~~r~~~~ 393 (557)
T PHA02713 321 KVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDD-------KWKMLPDMPIALSSYG 393 (557)
T ss_pred eEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCC-------eEEECCCCCccccccc
Confidence 589999999999999999999999999999999999999976667889999999999 9999999999999999
Q ss_pred eEEECC--eEEeccCCce------------------eeccee-----cCCeEEeeeC
Q psy11470 82 KASLHI--YIQNVPEGLV------------------YHKAMS-----SRKWRIVQVK 113 (114)
Q Consensus 82 ~~~~~~--yv~GG~~~~~------------------~~~~~~-----~~~W~~~~~~ 113 (114)
++++++ |++||..+.. .+++++ +++|+.+++|
T Consensus 394 ~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m 450 (557)
T PHA02713 394 MCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF 450 (557)
T ss_pred EEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC
Confidence 999999 9999975321 134555 8999999987
No 4
>PHA02713 hypothetical protein; Provisional
Probab=99.87 E-value=1.9e-21 Score=146.62 Aligned_cols=105 Identities=18% Similarity=0.394 Sum_probs=94.3
Q ss_pred eEEEEECCCCcEEEecCCcccccceeEEEECCEEEEEecCC-CCCCcCeEEEEeCCCCcCCcccceeEEcCCCCCcccce
Q psy11470 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRD-GLKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHGL 80 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~~r~~~ 80 (114)
++++||+.+++|..+++||.+|..+++++++++|||+||.. .....+++++||+.++ +|..+++||.+|..+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n-------~W~~~~~m~~~R~~~ 345 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENK-------IHVELPPMIKNRCRF 345 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCC-------eEeeCCCCcchhhce
Confidence 47899999999999999999999999999999999999985 3446789999999999 999999999999999
Q ss_pred eeEEECC--eEEeccCCceeeccee-----cCCeEEeeeC
Q psy11470 81 GKASLHI--YIQNVPEGLVYHKAMS-----SRKWRIVQVK 113 (114)
Q Consensus 81 ~~~~~~~--yv~GG~~~~~~~~~~~-----~~~W~~~~~~ 113 (114)
+++++++ |++||.++...+++++ +++|..+++|
T Consensus 346 ~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~m 385 (557)
T PHA02713 346 SLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDM 385 (557)
T ss_pred eEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCC
Confidence 9999999 9999987655556666 8999999886
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=99.84 E-value=4.1e-20 Score=137.39 Aligned_cols=100 Identities=21% Similarity=0.319 Sum_probs=88.4
Q ss_pred eEEEEECCCCcEEEecCCcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCCCCCccccee
Q psy11470 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHGLG 81 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~~r~~~~ 81 (114)
++++|||.+++|..+++|+.+|..+++++++++||++||.+. .+++++||+.++ +|..+++||.+|..++
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n-------~W~~~~~l~~~r~~~~ 357 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGDA-------AWVNMPSLLKPRCNPA 357 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC---CCceEEEECCCC-------eEEECCCCCCCCcccE
Confidence 589999999999999999999999999999999999999853 267999999999 9999999999999999
Q ss_pred eEEECC--eEEeccCCceeeccee-----cCCeEEeeeC
Q psy11470 82 KASLHI--YIQNVPEGLVYHKAMS-----SRKWRIVQVK 113 (114)
Q Consensus 82 ~~~~~~--yv~GG~~~~~~~~~~~-----~~~W~~~~~~ 113 (114)
++++++ |++||..+.. ++++ +++|+.+++|
T Consensus 358 ~~~~~g~IYviGG~~~~~--~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 358 VASINNVIYVIGGHSETD--TTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred EEEECCEEEEecCcCCCC--ccEEEEeCCCCEEEeCCCC
Confidence 999999 9999975431 3333 8999999877
No 6
>PHA02790 Kelch-like protein; Provisional
Probab=99.83 E-value=1.2e-19 Score=134.98 Aligned_cols=100 Identities=21% Similarity=0.305 Sum_probs=87.0
Q ss_pred eEEEEECCCCcEEEecCCcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCCCCCccccee
Q psy11470 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHGLG 81 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~~r~~~~ 81 (114)
++++|||.+++|..+++||.+|..+++++++++||++||.... .+.+++|||.++ +|..+++|+.+|..++
T Consensus 332 sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~-------~W~~~~~m~~~r~~~~ 402 (480)
T PHA02790 332 SVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNHD-------QWQFGPSTYYPHYKSC 402 (480)
T ss_pred ceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCCC-------EEEeCCCCCCccccce
Confidence 5899999999999999999999999999999999999998532 468999999999 9999999999999999
Q ss_pred eEEECC--eEEeccCCceeecceecCCeEEeeeC
Q psy11470 82 KASLHI--YIQNVPEGLVYHKAMSSRKWRIVQVK 113 (114)
Q Consensus 82 ~~~~~~--yv~GG~~~~~~~~~~~~~~W~~~~~~ 113 (114)
++++++ |++||... .. +.++++|+.+++|
T Consensus 403 ~~~~~~~IYv~GG~~e--~y-dp~~~~W~~~~~m 433 (480)
T PHA02790 403 ALVFGRRLFLVGRNAE--FY-CESSNTWTLIDDP 433 (480)
T ss_pred EEEECCEEEEECCceE--Ee-cCCCCcEeEcCCC
Confidence 999999 99998521 11 1128999999876
No 7
>PHA03098 kelch-like protein; Provisional
Probab=99.82 E-value=1.2e-19 Score=136.10 Aligned_cols=105 Identities=20% Similarity=0.336 Sum_probs=92.6
Q ss_pred eEEEEECCCCcEEEecCCcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCCCCCccccee
Q psy11470 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHGLG 81 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~~r~~~~ 81 (114)
++++||+.+++|..+++||.+|..+++++++++||++||.......+++++||+.++ +|..+++||.+|..++
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~-------~W~~~~~lp~~r~~~~ 384 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGES-------KWREEPPLIFPRYNPC 384 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCC-------ceeeCCCcCcCCccce
Confidence 689999999999999999999999999999999999999986667889999999999 9999999999999999
Q ss_pred eEEECC--eEEeccCCc-eeeccee-----cCCeEEeeeC
Q psy11470 82 KASLHI--YIQNVPEGL-VYHKAMS-----SRKWRIVQVK 113 (114)
Q Consensus 82 ~~~~~~--yv~GG~~~~-~~~~~~~-----~~~W~~~~~~ 113 (114)
++++++ |++||.... ..+++++ +++|+.+++|
T Consensus 385 ~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 424 (534)
T PHA03098 385 VVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL 424 (534)
T ss_pred EEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC
Confidence 999999 999996432 2244555 8899998765
No 8
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.82 E-value=2.7e-19 Score=126.98 Aligned_cols=105 Identities=20% Similarity=0.210 Sum_probs=88.4
Q ss_pred CeEEEEECCCCcE----EEecCCcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCCCCC-
Q psy11470 1 MSIEVFEIRANTW----TEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLT- 75 (114)
Q Consensus 1 ~~~~~yd~~~~~W----~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~- 75 (114)
+++++||+.+++| ..++++|.+|..+++++++++|||+||.......+++++||+.++ +|..+++||.
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~-------~W~~~~~~p~~ 160 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQ-------EWFELPDFPGE 160 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCC-------CeeECCCCCCC
Confidence 3689999999998 778999999999999999999999999865556899999999999 9999999884
Q ss_pred cccceeeEEECC--eEEeccCCceeeccee-----cCCeEEeeeC
Q psy11470 76 HRHGLGKASLHI--YIQNVPEGLVYHKAMS-----SRKWRIVQVK 113 (114)
Q Consensus 76 ~r~~~~~~~~~~--yv~GG~~~~~~~~~~~-----~~~W~~~~~~ 113 (114)
+|..++++++++ |++||.+.... .+++ +++|+.+++|
T Consensus 161 ~r~~~~~~~~~~~iYv~GG~~~~~~-~~~~~yd~~~~~W~~~~~~ 204 (323)
T TIGR03548 161 PRVQPVCVKLQNELYVFGGGSNIAY-TDGYKYSPKKNQWQKVADP 204 (323)
T ss_pred CCCcceEEEECCEEEEEcCCCCccc-cceEEEecCCCeeEECCCC
Confidence 788888888888 99999864321 2222 8899999865
No 9
>PLN02153 epithiospecifier protein
Probab=99.82 E-value=3.6e-19 Score=127.20 Aligned_cols=106 Identities=22% Similarity=0.297 Sum_probs=86.7
Q ss_pred eEEEEECCCCcEEEecCCc-ccc---cceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCCC----
Q psy11470 2 SIEVFEIRANTWTEIGHLR-NRR---LQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSM---- 73 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~~~-~~~---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~---- 73 (114)
++++||+.+++|..+++++ .|+ .++++++++++|||+||......++++++||+.++ +|..+++|
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~-------~W~~~~~~~~~~ 123 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN-------EWTFLTKLDEEG 123 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC-------EEEEeccCCCCC
Confidence 6899999999999987653 343 36888999999999999876667889999999999 99999887
Q ss_pred -CCcccceeeEEECC--eEEeccCCce------eeccee-----cCCeEEeeeCC
Q psy11470 74 -LTHRHGLGKASLHI--YIQNVPEGLV------YHKAMS-----SRKWRIVQVKG 114 (114)
Q Consensus 74 -~~~r~~~~~~~~~~--yv~GG~~~~~------~~~~~~-----~~~W~~~~~~g 114 (114)
|.+|..|+++++++ ||+||..... .+++++ +++|..+++++
T Consensus 124 ~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~ 178 (341)
T PLN02153 124 GPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPG 178 (341)
T ss_pred CCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCC
Confidence 78999999999988 9999975321 233444 88999988653
No 10
>PHA03098 kelch-like protein; Provisional
Probab=99.81 E-value=4.7e-19 Score=132.83 Aligned_cols=106 Identities=16% Similarity=0.191 Sum_probs=90.7
Q ss_pred CeEEEEECCCCcEEEecCCcccccceeEEEECCEEEEEecCCC-CCCcCeEEEEeCCCCcCCcccceeEEcCCCCCcccc
Q psy11470 1 MSIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDG-LKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHG 79 (114)
Q Consensus 1 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~~r~~ 79 (114)
+++++||+.+++|+.++++|.+|..+++++++++|||+||... ...++++++||+.++ +|..++++|.+|..
T Consensus 358 ~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~-------~W~~~~~~p~~r~~ 430 (534)
T PHA03098 358 NTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN-------KWSKGSPLPISHYG 430 (534)
T ss_pred ceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCC-------eeeecCCCCccccC
Confidence 3689999999999999999999999999999999999999753 345789999999999 99999999999999
Q ss_pred eeeEEECC--eEEeccCCcee---eccee-----cCCeEEeeeC
Q psy11470 80 LGKASLHI--YIQNVPEGLVY---HKAMS-----SRKWRIVQVK 113 (114)
Q Consensus 80 ~~~~~~~~--yv~GG~~~~~~---~~~~~-----~~~W~~~~~~ 113 (114)
++++++++ |++||...... .+.++ +++|+.++++
T Consensus 431 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 474 (534)
T PHA03098 431 GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSL 474 (534)
T ss_pred ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCC
Confidence 99999988 99999754321 23343 8899998765
No 11
>PLN02193 nitrile-specifier protein
Probab=99.81 E-value=1.2e-18 Score=129.28 Aligned_cols=106 Identities=17% Similarity=0.285 Sum_probs=90.2
Q ss_pred CeEEEEECCCCcEEEecCC---cccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCC---CC
Q psy11470 1 MSIEVFEIRANTWTEIGHL---RNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPS---ML 74 (114)
Q Consensus 1 ~~~~~yd~~~~~W~~~~~~---~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~---~~ 74 (114)
+++++||+.+++|++++++ |.+|..|++++++++|||+||++....++++++||+.++ +|..+++ +|
T Consensus 244 ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~-------~W~~~~~~~~~~ 316 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDK-------KWFHCSTPGDSF 316 (470)
T ss_pred ccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCC-------EEEeCCCCCCCC
Confidence 3689999999999999887 788999999999999999999987777899999999999 9999875 67
Q ss_pred CcccceeeEEECC--eEEeccCCceeeccee-----cCCeEEeeeCC
Q psy11470 75 THRHGLGKASLHI--YIQNVPEGLVYHKAMS-----SRKWRIVQVKG 114 (114)
Q Consensus 75 ~~r~~~~~~~~~~--yv~GG~~~~~~~~~~~-----~~~W~~~~~~g 114 (114)
.+|..++++++++ |++||.++.. +++++ +++|+.++++|
T Consensus 317 ~~R~~~~~~~~~gkiyviGG~~g~~-~~dv~~yD~~t~~W~~~~~~g 362 (470)
T PLN02193 317 SIRGGAGLEVVQGKVWVVYGFNGCE-VDDVHYYDPVQDKWTQVETFG 362 (470)
T ss_pred CCCCCcEEEEECCcEEEEECCCCCc-cCceEEEECCCCEEEEeccCC
Confidence 7899999999988 9999976432 34444 88999987653
No 12
>PLN02153 epithiospecifier protein
Probab=99.80 E-value=1.6e-18 Score=123.87 Aligned_cols=105 Identities=22% Similarity=0.288 Sum_probs=85.0
Q ss_pred eEEEEECCCCcEEEecCC-----cccccceeEEEECCEEEEEecCCCC------CCcCeEEEEeCCCCcCCcccceeEEc
Q psy11470 2 SIEVFEIRANTWTEIGHL-----RNRRLQFGAEVLNGKIHVVGGRDGL------KTVNTFEYLNTHSDMKDRIEVTWTSL 70 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~~-----~~~~~~~~~~~~~~~iyv~GG~~~~------~~~~~~~~~d~~t~~~~~~~~~W~~~ 70 (114)
++++||+.+++|+.++++ |.+|..|++++++++|||+||+... ..++++++||+.++ +|..+
T Consensus 102 ~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~-------~W~~l 174 (341)
T PLN02153 102 DFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG-------KWVQL 174 (341)
T ss_pred cEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCC-------eEeeC
Confidence 689999999999999877 7789999999999999999998632 13578999999999 99999
Q ss_pred CCCC---CcccceeeEEECC--eEEeccCCc--------eeeccee-----cCCeEEeeeC
Q psy11470 71 PSML---THRHGLGKASLHI--YIQNVPEGL--------VYHKAMS-----SRKWRIVQVK 113 (114)
Q Consensus 71 ~~~~---~~r~~~~~~~~~~--yv~GG~~~~--------~~~~~~~-----~~~W~~~~~~ 113 (114)
+++. .+|..++++++++ |++||.... ..++.++ +++|+.++.+
T Consensus 175 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 175 PDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred CCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEecccc
Confidence 8764 6889999999988 999986421 1123344 8899998754
No 13
>PLN02193 nitrile-specifier protein
Probab=99.79 E-value=3e-18 Score=127.14 Aligned_cols=104 Identities=21% Similarity=0.328 Sum_probs=86.9
Q ss_pred eEEEEECCCCcEEEecCC---cc-cccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCCC---C
Q psy11470 2 SIEVFEIRANTWTEIGHL---RN-RRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSM---L 74 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~~---~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~---~ 74 (114)
++++||+.+++|+.++.+ |. .|..+++++++++|||+||.+....++++++||+.++ +|..++++ |
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~-------~W~~l~~~~~~P 266 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN-------EWKLLTPVEEGP 266 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC-------EEEEcCcCCCCC
Confidence 589999999999987643 33 2567888899999999999986667899999999999 99999887 7
Q ss_pred CcccceeeEEECC--eEEeccCCceeeccee-----cCCeEEeee
Q psy11470 75 THRHGLGKASLHI--YIQNVPEGLVYHKAMS-----SRKWRIVQV 112 (114)
Q Consensus 75 ~~r~~~~~~~~~~--yv~GG~~~~~~~~~~~-----~~~W~~~~~ 112 (114)
.+|..|+++++++ |++||.+....++.++ +++|+.+++
T Consensus 267 ~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~ 311 (470)
T PLN02193 267 TPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCST 311 (470)
T ss_pred CCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCC
Confidence 8999999999888 9999987654444444 889998765
No 14
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.78 E-value=2.8e-18 Score=122.67 Aligned_cols=105 Identities=11% Similarity=0.132 Sum_probs=81.7
Q ss_pred eEEEEECCCCcEEEec-CCcccccceeEE-EECCEEEEEecCCCCC----------------------------------
Q psy11470 2 SIEVFEIRANTWTEIG-HLRNRRLQFGAE-VLNGKIHVVGGRDGLK---------------------------------- 45 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~-~~~~~~~~~~~~-~~~~~iyv~GG~~~~~---------------------------------- 45 (114)
++++||+.+++|++++ .+|.+|.+++++ +++++||++||++...
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYF 165 (346)
T ss_pred cEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcC
Confidence 5899999999999997 456667666666 6899999999986321
Q ss_pred CcCeEEEEeCCCCcCCcccceeEEcCCCCC-cccceeeEEECC--eEEeccCCcee-ecce-----e--cCCeEEeeeC
Q psy11470 46 TVNTFEYLNTHSDMKDRIEVTWTSLPSMLT-HRHGLGKASLHI--YIQNVPEGLVY-HKAM-----S--SRKWRIVQVK 113 (114)
Q Consensus 46 ~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~-~r~~~~~~~~~~--yv~GG~~~~~~-~~~~-----~--~~~W~~~~~~ 113 (114)
..+++++|||.++ +|..+++||. +|..++++++++ |++||...... ...+ . +++|+.+++|
T Consensus 166 ~~~~v~~YDp~t~-------~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m 237 (346)
T TIGR03547 166 WNKNVLSYDPSTN-------QWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL 237 (346)
T ss_pred ccceEEEEECCCC-------ceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCC
Confidence 1478999999999 9999999996 688888888888 99999753221 1111 1 5689999877
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.77 E-value=9.2e-18 Score=119.12 Aligned_cols=105 Identities=9% Similarity=0.055 Sum_probs=86.8
Q ss_pred eEEEEE-CC-CCcEEEecCCcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCccccee----EEcCCCCC
Q psy11470 2 SIEVFE-IR-ANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTW----TSLPSMLT 75 (114)
Q Consensus 2 ~~~~yd-~~-~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W----~~~~~~~~ 75 (114)
++++|+ +. +.+|..+++||.+|..++++++++.||++||.+....++++++||+.++ +| ..+++||.
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~-------~w~~~~~~~~~lp~ 112 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDES-------KEELICETIGNLPF 112 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCC-------ceeeeeeEcCCCCc
Confidence 456664 33 2379999999999988888999999999999987667899999999998 77 78899999
Q ss_pred cccceeeEEECC--eEEeccCCceeeccee-----cCCeEEeeeC
Q psy11470 76 HRHGLGKASLHI--YIQNVPEGLVYHKAMS-----SRKWRIVQVK 113 (114)
Q Consensus 76 ~r~~~~~~~~~~--yv~GG~~~~~~~~~~~-----~~~W~~~~~~ 113 (114)
+|..++++++++ |++||......+++++ +++|+.+++|
T Consensus 113 ~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 157 (323)
T TIGR03548 113 TFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDF 157 (323)
T ss_pred CccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCC
Confidence 999999999998 9999975433345555 8899999865
No 16
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.76 E-value=1.5e-17 Score=118.89 Aligned_cols=86 Identities=17% Similarity=0.263 Sum_probs=71.9
Q ss_pred eEEEEEC--CCCcEEEecCCc-ccccceeEEEECCEEEEEecCCCC------CCcCeEEEEeCCCCcCCcccceeEEcC-
Q psy11470 2 SIEVFEI--RANTWTEIGHLR-NRRLQFGAEVLNGKIHVVGGRDGL------KTVNTFEYLNTHSDMKDRIEVTWTSLP- 71 (114)
Q Consensus 2 ~~~~yd~--~~~~W~~~~~~~-~~~~~~~~~~~~~~iyv~GG~~~~------~~~~~~~~~d~~t~~~~~~~~~W~~~~- 71 (114)
++++||+ .+++|..+++|| .+|..+++++++++|||+||+... ..++++++||+.++ +|+.++
T Consensus 30 ~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~-------~W~~~~~ 102 (346)
T TIGR03547 30 SWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN-------SWQKLDT 102 (346)
T ss_pred eeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCC-------EEecCCC
Confidence 5788996 678999999998 589999999999999999998532 14789999999999 999997
Q ss_pred CCCCcccceeeE-EECC--eEEeccC
Q psy11470 72 SMLTHRHGLGKA-SLHI--YIQNVPE 94 (114)
Q Consensus 72 ~~~~~r~~~~~~-~~~~--yv~GG~~ 94 (114)
++|.+|..++++ ++++ |++||.+
T Consensus 103 ~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 103 RSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCCCcccceeEEEEeCCEEEEEcCcC
Confidence 466677666666 5777 9999975
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.74 E-value=3.7e-17 Score=118.31 Aligned_cols=105 Identities=13% Similarity=0.137 Sum_probs=81.1
Q ss_pred eEEEEECCCCcEEEecC-CcccccceeEEE-ECCEEEEEecCCCC----------------------------------C
Q psy11470 2 SIEVFEIRANTWTEIGH-LRNRRLQFGAEV-LNGKIHVVGGRDGL----------------------------------K 45 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~-~~~~iyv~GG~~~~----------------------------------~ 45 (114)
++++||+.+++|+.++. +|.++.++.+++ .+++||++||.... .
T Consensus 107 ~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (376)
T PRK14131 107 DVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYF 186 (376)
T ss_pred cEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcC
Confidence 58999999999999985 366677777666 79999999997531 1
Q ss_pred CcCeEEEEeCCCCcCCcccceeEEcCCCCC-cccceeeEEECC--eEEeccCCce-eecce-------ecCCeEEeeeC
Q psy11470 46 TVNTFEYLNTHSDMKDRIEVTWTSLPSMLT-HRHGLGKASLHI--YIQNVPEGLV-YHKAM-------SSRKWRIVQVK 113 (114)
Q Consensus 46 ~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~-~r~~~~~~~~~~--yv~GG~~~~~-~~~~~-------~~~~W~~~~~~ 113 (114)
..+++++||+.++ +|..++++|. +|..++++++++ |++||..... ....+ ++++|+.+++|
T Consensus 187 ~~~~v~~YD~~t~-------~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 258 (376)
T PRK14131 187 FNKEVLSYDPSTN-------QWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL 258 (376)
T ss_pred cCceEEEEECCCC-------eeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCC
Confidence 2478999999999 9999999996 677888888888 9999964321 11111 16899998876
No 18
>KOG0379|consensus
Probab=99.66 E-value=1.4e-15 Score=113.36 Aligned_cols=106 Identities=20% Similarity=0.415 Sum_probs=89.8
Q ss_pred eEEEEECCCCcEEEec---CCcccccceeEEEECCEEEEEecCCCCC-CcCeEEEEeCCCCcCCcccceeEEcC---CCC
Q psy11470 2 SIEVFEIRANTWTEIG---HLRNRRLQFGAEVLNGKIHVVGGRDGLK-TVNTFEYLNTHSDMKDRIEVTWTSLP---SML 74 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~t~~~~~~~~~W~~~~---~~~ 74 (114)
++++||+.+++|..+. .+|.+|.+|++++++++|||+||..... .++++++||+.+. +|.++. +.|
T Consensus 140 ~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~-------~W~~~~~~g~~P 212 (482)
T KOG0379|consen 140 ELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETS-------TWSELDTQGEAP 212 (482)
T ss_pred heEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccc-------cceecccCCCCC
Confidence 6899999999999873 3578899999999999999999998655 8999999999999 999984 577
Q ss_pred CcccceeeEEECC--eEEeccC-Cceeeccee-----cCCeEEeeeCC
Q psy11470 75 THRHGLGKASLHI--YIQNVPE-GLVYHKAMS-----SRKWRIVQVKG 114 (114)
Q Consensus 75 ~~r~~~~~~~~~~--yv~GG~~-~~~~~~~~~-----~~~W~~~~~~g 114 (114)
.||.+|+++++++ +++||.. +..+++++. +.+|..++..|
T Consensus 213 ~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 213 SPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGG 260 (482)
T ss_pred CCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccC
Confidence 8999999999999 8888876 445566666 78888766543
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.66 E-value=2.4e-15 Score=108.89 Aligned_cols=86 Identities=21% Similarity=0.308 Sum_probs=70.5
Q ss_pred eEEEEECC--CCcEEEecCCc-ccccceeEEEECCEEEEEecCCC------CCCcCeEEEEeCCCCcCCcccceeEEcCC
Q psy11470 2 SIEVFEIR--ANTWTEIGHLR-NRRLQFGAEVLNGKIHVVGGRDG------LKTVNTFEYLNTHSDMKDRIEVTWTSLPS 72 (114)
Q Consensus 2 ~~~~yd~~--~~~W~~~~~~~-~~~~~~~~~~~~~~iyv~GG~~~------~~~~~~~~~~d~~t~~~~~~~~~W~~~~~ 72 (114)
.+++||+. ++.|..++++| .+|..+++++++++|||+||+.. ...++++++||+.++ +|..+++
T Consensus 51 ~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n-------~W~~~~~ 123 (376)
T PRK14131 51 SWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN-------SWQKLDT 123 (376)
T ss_pred eEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC-------EEEeCCC
Confidence 46789886 47899999987 47989999999999999999864 124689999999999 9999986
Q ss_pred -CCCcccceeeEE-ECC--eEEeccC
Q psy11470 73 -MLTHRHGLGKAS-LHI--YIQNVPE 94 (114)
Q Consensus 73 -~~~~r~~~~~~~-~~~--yv~GG~~ 94 (114)
+|.++..+++++ .++ |++||..
T Consensus 124 ~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 124 RSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCCCcccceEEEEeeCCEEEEECCCC
Confidence 466676677666 677 9999975
No 20
>PF13964 Kelch_6: Kelch motif
Probab=99.59 E-value=6.5e-15 Score=77.92 Aligned_cols=49 Identities=41% Similarity=0.584 Sum_probs=45.7
Q ss_pred cccceeEEEECCEEEEEecCCC-CCCcCeEEEEeCCCCcCCcccceeEEcCCCCCcc
Q psy11470 22 RRLQFGAEVLNGKIHVVGGRDG-LKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHR 77 (114)
Q Consensus 22 ~~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~~r 77 (114)
||..+++++++++|||+||... ....+++++||+.++ +|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~-------~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETN-------TWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCC-------cEEECCCCCCCC
Confidence 5889999999999999999987 678999999999999 999999999887
No 21
>KOG4693|consensus
Probab=99.56 E-value=2.1e-14 Score=98.93 Aligned_cols=106 Identities=19% Similarity=0.290 Sum_probs=85.5
Q ss_pred eEEEEECCCCcEEEecC-------------CcccccceeEEEECCEEEEEecCCC-CCCcCeEEEEeCCCCcCCccccee
Q psy11470 2 SIEVFEIRANTWTEIGH-------------LRNRRLQFGAEVLNGKIHVVGGRDG-LKTVNTFEYLNTHSDMKDRIEVTW 67 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~-------------~~~~~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~t~~~~~~~~~W 67 (114)
+|.++|..+-+|.++++ .|--|++|+++..++++||.||++. ....+.++.|||.++ +|
T Consensus 45 DVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~-------~W 117 (392)
T KOG4693|consen 45 DVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETN-------VW 117 (392)
T ss_pred eeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccc-------cc
Confidence 47789999999998865 1334999999999999999999986 567899999999999 99
Q ss_pred EEcC---CCCCcccceeeEEECC--eEEeccCCce-ee-ccee-----cCCeEEeeeCC
Q psy11470 68 TSLP---SMLTHRHGLGKASLHI--YIQNVPEGLV-YH-KAMS-----SRKWRIVQVKG 114 (114)
Q Consensus 68 ~~~~---~~~~~r~~~~~~~~~~--yv~GG~~~~~-~~-~~~~-----~~~W~~~~~~g 114 (114)
.+.. -+|.+|.+|++++.++ |++||+.... .+ +.+. +.+|..+...|
T Consensus 118 ~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg 176 (392)
T KOG4693|consen 118 KKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKG 176 (392)
T ss_pred cccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccC
Confidence 8764 4789999999999999 9999985422 11 2222 88899887654
No 22
>KOG4693|consensus
Probab=99.49 E-value=4.5e-14 Score=97.29 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=73.8
Q ss_pred eEEEEECCCCcEEEe---cCCcccccceeEEEECCEEEEEecCCC--CCCcCeEEEEeCCCCcCCcccceeEEcCC---C
Q psy11470 2 SIEVFEIRANTWTEI---GHLRNRRLQFGAEVLNGKIHVVGGRDG--LKTVNTFEYLNTHSDMKDRIEVTWTSLPS---M 73 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~---~~~~~~~~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~~d~~t~~~~~~~~~W~~~~~---~ 73 (114)
.+++|||+++.|.+. .-+|.+|.+|++|++++.+||+||+.+ .+.+++++++|..|. +|+.+.. .
T Consensus 106 ~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~Tm-------tWr~~~Tkg~P 178 (392)
T KOG4693|consen 106 LLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATM-------TWREMHTKGDP 178 (392)
T ss_pred eeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccce-------eeeehhccCCC
Confidence 368999999999875 346888999999999999999999964 457899999999999 9999864 3
Q ss_pred CCcccceeeEEECC--eEEeccCC
Q psy11470 74 LTHRHGLGKASLHI--YIQNVPEG 95 (114)
Q Consensus 74 ~~~r~~~~~~~~~~--yv~GG~~~ 95 (114)
|.=|..|++.++++ |++||...
T Consensus 179 prwRDFH~a~~~~~~MYiFGGR~D 202 (392)
T KOG4693|consen 179 PRWRDFHTASVIDGMMYIFGGRSD 202 (392)
T ss_pred chhhhhhhhhhccceEEEeccccc
Confidence 44577899999999 99999753
No 23
>KOG0379|consensus
Probab=99.49 E-value=3.5e-13 Score=100.55 Aligned_cols=106 Identities=17% Similarity=0.344 Sum_probs=89.5
Q ss_pred eEEEEECCCCcEEEec---CCcccccceeEEEECCEEEEEecCCC-CCCcCeEEEEeCCCCcCCcccceeEEcCC---CC
Q psy11470 2 SIEVFEIRANTWTEIG---HLRNRRLQFGAEVLNGKIHVVGGRDG-LKTVNTFEYLNTHSDMKDRIEVTWTSLPS---ML 74 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~t~~~~~~~~~W~~~~~---~~ 74 (114)
+++++|..+..|.... ..|.+|.++.++.++++||++||.+. ...+++++.||+.|. +|..+.+ .|
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~-------~W~~l~~~~~~P 161 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTR-------TWSLLSPTGDPP 161 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCC-------cEEEecCcCCCC
Confidence 4899999999998753 34678999999999999999999974 556889999999999 9998854 68
Q ss_pred CcccceeeEEECC--eEEeccCCce-eeccee-----cCCeEEeeeCC
Q psy11470 75 THRHGLGKASLHI--YIQNVPEGLV-YHKAMS-----SRKWRIVQVKG 114 (114)
Q Consensus 75 ~~r~~~~~~~~~~--yv~GG~~~~~-~~~~~~-----~~~W~~~~~~g 114 (114)
.+|.+|+++++++ ||+||..... ..+++. +.+|.++...|
T Consensus 162 ~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g 209 (482)
T KOG0379|consen 162 PPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQG 209 (482)
T ss_pred CCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCC
Confidence 8999999999999 9999987654 455555 88899987655
No 24
>KOG1230|consensus
Probab=99.47 E-value=2.5e-13 Score=97.91 Aligned_cols=88 Identities=13% Similarity=0.168 Sum_probs=76.1
Q ss_pred CeEEEEECCCCcEEEec--CCcccccceeEEEECCEEEEEecCCC----CCCcCeEEEEeCCCCcCCcccceeEEcCC--
Q psy11470 1 MSIEVFEIRANTWTEIG--HLRNRRLQFGAEVLNGKIHVVGGRDG----LKTVNTFEYLNTHSDMKDRIEVTWTSLPS-- 72 (114)
Q Consensus 1 ~~~~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~iyv~GG~~~----~~~~~~~~~~d~~t~~~~~~~~~W~~~~~-- 72 (114)
+++|.||..+++|+++. .-|.+|.+|.+++...+|+++||+.. ..+.|++++||+.|- +|..+.+
T Consensus 154 kD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdty-------kW~Klepsg 226 (521)
T KOG1230|consen 154 KDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTY-------KWSKLEPSG 226 (521)
T ss_pred hheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccce-------eeeeccCCC
Confidence 46899999999999984 45889999999999999999999863 236899999999999 9999965
Q ss_pred -CCCcccceeeEEE-CC--eEEeccCC
Q psy11470 73 -MLTHRHGLGKASL-HI--YIQNVPEG 95 (114)
Q Consensus 73 -~~~~r~~~~~~~~-~~--yv~GG~~~ 95 (114)
-|.+|+++.+.+. ++ |+.||+..
T Consensus 227 a~PtpRSGcq~~vtpqg~i~vyGGYsK 253 (521)
T KOG1230|consen 227 AGPTPRSGCQFSVTPQGGIVVYGGYSK 253 (521)
T ss_pred CCCCCCCcceEEecCCCcEEEEcchhH
Confidence 4789999999988 44 99999864
No 25
>KOG1230|consensus
Probab=99.45 E-value=6.5e-13 Score=95.80 Aligned_cols=106 Identities=13% Similarity=0.269 Sum_probs=87.1
Q ss_pred eEEEEECCCCcEEEe--cCCcccccceeEEEEC-CEEEEEecCC----C--CCCcCeEEEEeCCCCcCCcccceeEEcC-
Q psy11470 2 SIEVFEIRANTWTEI--GHLRNRRLQFGAEVLN-GKIHVVGGRD----G--LKTVNTFEYLNTHSDMKDRIEVTWTSLP- 71 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~--~~~~~~~~~~~~~~~~-~~iyv~GG~~----~--~~~~~~~~~~d~~t~~~~~~~~~W~~~~- 71 (114)
+++.||.+++.|.++ ++.|.||..|.++++. +.+|++||-. + .-..+++++||+.+. +|.++.
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~tr-------kweql~~ 171 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTR-------KWEQLEF 171 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccc-------hheeecc
Confidence 578999999999987 5568889999999985 8999999952 1 224789999999999 999985
Q ss_pred -CCCCcccceeeEEECC--eEEeccCCc----eeeccee-----cCCeEEeeeCC
Q psy11470 72 -SMLTHRHGLGKASLHI--YIQNVPEGL----VYHKAMS-----SRKWRIVQVKG 114 (114)
Q Consensus 72 -~~~~~r~~~~~~~~~~--yv~GG~~~~----~~~~~~~-----~~~W~~~~~~g 114 (114)
.-|.+|++|-+++... ++|||.... .+.+++. +-+|..+.+.|
T Consensus 172 ~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsg 226 (521)
T KOG1230|consen 172 GGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSG 226 (521)
T ss_pred CCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCC
Confidence 4788999999999988 889997542 3566666 88899988754
No 26
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.43 E-value=2.2e-13 Score=70.93 Aligned_cols=46 Identities=37% Similarity=0.620 Sum_probs=42.2
Q ss_pred cccceeEEEECCEEEEEecCCC-CCCcCeEEEEeCCCCcCCcccceeEEcCCCC
Q psy11470 22 RRLQFGAEVLNGKIHVVGGRDG-LKTVNTFEYLNTHSDMKDRIEVTWTSLPSML 74 (114)
Q Consensus 22 ~~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~ 74 (114)
||..+++++++++|||+||... ....+++++||+.++ +|..+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~-------~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETN-------TWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTT-------EEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCC-------EEEEcCCCC
Confidence 5889999999999999999987 678999999999999 999999886
No 27
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.32 E-value=7.9e-12 Score=65.75 Aligned_cols=47 Identities=26% Similarity=0.454 Sum_probs=42.7
Q ss_pred CCEEEEEecCC--CCCCcCeEEEEeCCCCcCCcccceeEEcCCCCCcccceeeEEE
Q psy11470 32 NGKIHVVGGRD--GLKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHGLGKASL 85 (114)
Q Consensus 32 ~~~iyv~GG~~--~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~~r~~~~~~~~ 85 (114)
+++|||+||.. ....++++++||+.+. +|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~-------~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTN-------TWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCC-------EEEECCCCCCCccceEEEEC
Confidence 57899999998 5667999999999999 99999999999999999863
No 28
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.31 E-value=1.2e-11 Score=64.99 Aligned_cols=46 Identities=37% Similarity=0.549 Sum_probs=41.4
Q ss_pred cccceeEEEECCEEEEEecC---CCCCCcCeEEEEeCCCCcCCcccceeEEcCCCC
Q psy11470 22 RRLQFGAEVLNGKIHVVGGR---DGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSML 74 (114)
Q Consensus 22 ~~~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~ 74 (114)
||..|++++++++|||+||+ ......+++++||+.++ +|..+++||
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~-------~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETN-------QWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCC-------EEeecCCCC
Confidence 58899999999999999999 44567899999999999 999999875
No 29
>smart00612 Kelch Kelch domain.
Probab=99.30 E-value=6.4e-12 Score=64.88 Aligned_cols=47 Identities=43% Similarity=0.656 Sum_probs=42.4
Q ss_pred EEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCCCCCcccceeeEEECC
Q psy11470 34 KIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHGLGKASLHI 87 (114)
Q Consensus 34 ~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~~r~~~~~~~~~~ 87 (114)
+||++||.......+++++||+.++ +|..+++||.+|..++++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~-------~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETN-------KWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCC-------eEccCCCCCCccccceEEEeCC
Confidence 4899999976667899999999999 9999999999999999988864
No 30
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=99.23 E-value=1.5e-11 Score=64.50 Aligned_cols=47 Identities=34% Similarity=0.576 Sum_probs=31.3
Q ss_pred cccceeEEEE-CCEEEEEecCCCC-CCcCeEEEEeCCCCcCCcccceeEEcCCCCC
Q psy11470 22 RRLQFGAEVL-NGKIHVVGGRDGL-KTVNTFEYLNTHSDMKDRIEVTWTSLPSMLT 75 (114)
Q Consensus 22 ~~~~~~~~~~-~~~iyv~GG~~~~-~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~ 75 (114)
||.+|+++.+ +++|||+||.+.. ..++++++||+.++ +|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~-------~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETN-------TWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTT-------EEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCC-------EEEECCCCCC
Confidence 5889999998 6999999999765 58999999999999 9999988873
No 31
>PF13854 Kelch_5: Kelch motif
Probab=98.87 E-value=8.6e-09 Score=52.39 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=34.6
Q ss_pred CcccccceeEEEECCEEEEEecCC--CCCCcCeEEEEeCCC
Q psy11470 19 LRNRRLQFGAEVLNGKIHVVGGRD--GLKTVNTFEYLNTHS 57 (114)
Q Consensus 19 ~~~~~~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~~d~~t 57 (114)
+|.+|.+|++++++++|||+||.. .....+++++||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 478899999999999999999998 356789999999876
No 32
>PLN02772 guanylate kinase
Probab=98.76 E-value=6.4e-08 Score=70.54 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=57.3
Q ss_pred ccccceeEEEECCEEEEEecCCCCC-CcCeEEEEeCCCCcCCcccceeEEcC---CCCCcccceeeEEECC---eEEecc
Q psy11470 21 NRRLQFGAEVLNGKIHVVGGRDGLK-TVNTFEYLNTHSDMKDRIEVTWTSLP---SMLTHRHGLGKASLHI---YIQNVP 93 (114)
Q Consensus 21 ~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~t~~~~~~~~~W~~~~---~~~~~r~~~~~~~~~~---yv~GG~ 93 (114)
.++..++++.+++++||+||.+... ..+.+++||+.|. +|.... ..|.+|.+|+++++++ +|+++.
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~-------~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITN-------NWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCC-------cEecccccCCCCCCCCcceEEEECCceEEEEeCC
Confidence 3678899999999999999988654 6789999999999 998875 5788999999999976 888754
Q ss_pred C
Q psy11470 94 E 94 (114)
Q Consensus 94 ~ 94 (114)
.
T Consensus 96 ~ 96 (398)
T PLN02772 96 S 96 (398)
T ss_pred C
Confidence 3
No 33
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.76 E-value=2.8e-08 Score=70.90 Aligned_cols=78 Identities=26% Similarity=0.346 Sum_probs=64.6
Q ss_pred CCcEEEecCCcc-cccceeEEEECCEEEEEecCCCC-----CCcCeEEEEeCCCCcCCcccceeEEcCC-CCCcccceee
Q psy11470 10 ANTWTEIGHLRN-RRLQFGAEVLNGKIHVVGGRDGL-----KTVNTFEYLNTHSDMKDRIEVTWTSLPS-MLTHRHGLGK 82 (114)
Q Consensus 10 ~~~W~~~~~~~~-~~~~~~~~~~~~~iyv~GG~~~~-----~~~~~~~~~d~~t~~~~~~~~~W~~~~~-~~~~r~~~~~ 82 (114)
...|++++..|- +|.+...++++++|||+||.... ...+++++|||.++ +|..+.. .|.....+..
T Consensus 69 ~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~n-------sW~kl~t~sP~gl~G~~~ 141 (381)
T COG3055 69 GKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTN-------SWHKLDTRSPTGLVGAST 141 (381)
T ss_pred CCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCC-------hhheecccccccccccee
Confidence 467999999875 58888899999999999998532 24789999999999 9999864 5666777778
Q ss_pred EEECC---eEEeccC
Q psy11470 83 ASLHI---YIQNVPE 94 (114)
Q Consensus 83 ~~~~~---yv~GG~~ 94 (114)
+++++ |++||.+
T Consensus 142 ~~~~~~~i~f~GGvn 156 (381)
T COG3055 142 FSLNGTKIYFFGGVN 156 (381)
T ss_pred EecCCceEEEEcccc
Confidence 88887 9999976
No 34
>KOG4152|consensus
Probab=98.74 E-value=4.4e-08 Score=73.12 Aligned_cols=87 Identities=22% Similarity=0.363 Sum_probs=71.4
Q ss_pred eEEEEECCCCcEEEe---cCCcccccceeEEEECCEEEEEecCC-----C---------CCCcCeEEEEeCCCCcCCccc
Q psy11470 2 SIEVFEIRANTWTEI---GHLRNRRLQFGAEVLNGKIHVVGGRD-----G---------LKTVNTFEYLNTHSDMKDRIE 64 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~---~~~~~~~~~~~~~~~~~~iyv~GG~~-----~---------~~~~~~~~~~d~~t~~~~~~~ 64 (114)
++|.+|..+-+|.+. ...|.||.-|+++.+++++||+||.- . .+..+++-++|+.+.
T Consensus 231 DLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~------ 304 (830)
T KOG4152|consen 231 DLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTM------ 304 (830)
T ss_pred ceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecch------
Confidence 578999999999876 33577899999999999999999962 1 123567888999999
Q ss_pred ceeEEcC-------CCCCcccceeeEEECC--eEEeccCC
Q psy11470 65 VTWTSLP-------SMLTHRHGLGKASLHI--YIQNVPEG 95 (114)
Q Consensus 65 ~~W~~~~-------~~~~~r~~~~~~~~~~--yv~GG~~~ 95 (114)
.|..+- ..|.+|++|++++++. |+-.|.++
T Consensus 305 -~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDG 343 (830)
T KOG4152|consen 305 -AWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDG 343 (830)
T ss_pred -heeeeeeccccccccccccccceeEEeccEEEEEeccch
Confidence 998873 2788999999999998 99888765
No 35
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.72 E-value=4e-08 Score=70.12 Aligned_cols=105 Identities=14% Similarity=0.120 Sum_probs=73.8
Q ss_pred CeEEEEECCCCcEEEecCC-cccccceeEEEECC-EEEEEecCCCC----------------------------------
Q psy11470 1 MSIEVFEIRANTWTEIGHL-RNRRLQFGAEVLNG-KIHVVGGRDGL---------------------------------- 44 (114)
Q Consensus 1 ~~~~~yd~~~~~W~~~~~~-~~~~~~~~~~~~~~-~iyv~GG~~~~---------------------------------- 44 (114)
+++++|||.+++|+++... |....++.++.+++ +||++||.+..
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy 192 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDY 192 (381)
T ss_pred eeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHh
Confidence 3689999999999998663 56677788888877 99999997431
Q ss_pred CCcCeEEEEeCCCCcCCcccceeEEcCCCC-CcccceeeEEECC--eEEeccCCceeeccee---------cCCeEEeee
Q psy11470 45 KTVNTFEYLNTHSDMKDRIEVTWTSLPSML-THRHGLGKASLHI--YIQNVPEGLVYHKAMS---------SRKWRIVQV 112 (114)
Q Consensus 45 ~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~-~~r~~~~~~~~~~--yv~GG~~~~~~~~~~~---------~~~W~~~~~ 112 (114)
...+.+..|+|.++ .|+.+...| .+++..+.+.-++ .+|.|..... +++.+ ..+|..+++
T Consensus 193 ~~n~ev~sy~p~~n-------~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpG-LRt~~~k~~~~~~~~~~w~~l~~ 264 (381)
T COG3055 193 FFNKEVLSYDPSTN-------QWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPG-LRTAEVKQADFGGDNLKWLKLSD 264 (381)
T ss_pred cccccccccccccc-------hhhhcCcCcccCccCcceeecCCeEEEEcceecCC-ccccceeEEEeccCceeeeeccC
Confidence 12457788999999 999998666 4566544333344 6677765433 33322 667888754
Q ss_pred C
Q psy11470 113 K 113 (114)
Q Consensus 113 ~ 113 (114)
+
T Consensus 265 l 265 (381)
T COG3055 265 L 265 (381)
T ss_pred C
Confidence 3
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.60 E-value=8.3e-08 Score=49.55 Aligned_cols=38 Identities=13% Similarity=0.223 Sum_probs=32.2
Q ss_pred cccceeeEEECC--eEEeccCC-ceeeccee-----cCCeEEeeeC
Q psy11470 76 HRHGLGKASLHI--YIQNVPEG-LVYHKAMS-----SRKWRIVQVK 113 (114)
Q Consensus 76 ~r~~~~~~~~~~--yv~GG~~~-~~~~~~~~-----~~~W~~~~~~ 113 (114)
+|..++++++++ |++||... ...+++++ +++|+.+++|
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 588999999999 99999877 55667777 9999999987
No 37
>KOG4152|consensus
Probab=98.57 E-value=5.5e-07 Score=67.43 Aligned_cols=74 Identities=20% Similarity=0.224 Sum_probs=61.0
Q ss_pred EEEe---cCCcccccceeEEEE------CCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcC---CCCCcccce
Q psy11470 13 WTEI---GHLRNRRLQFGAEVL------NGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLP---SMLTHRHGL 80 (114)
Q Consensus 13 W~~~---~~~~~~~~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~---~~~~~r~~~ 80 (114)
|... ..+|.+|..|.++.. ..++||+||.++ ..+.+++.+|+.|- +|.+.. -.|.+|+-|
T Consensus 187 W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G-~RLgDLW~Ldl~Tl-------~W~kp~~~G~~PlPRSLH 258 (830)
T KOG4152|consen 187 WDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG-CRLGDLWTLDLDTL-------TWNKPSLSGVAPLPRSLH 258 (830)
T ss_pred EecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc-ccccceeEEeccee-------ecccccccCCCCCCcccc
Confidence 6543 456888999988887 358999999875 46899999999999 998864 256789999
Q ss_pred eeEEECC--eEEeccC
Q psy11470 81 GKASLHI--YIQNVPE 94 (114)
Q Consensus 81 ~~~~~~~--yv~GG~~ 94 (114)
++..+++ |++||+-
T Consensus 259 sa~~IGnKMyvfGGWV 274 (830)
T KOG4152|consen 259 SATTIGNKMYVFGGWV 274 (830)
T ss_pred cceeecceeEEeccee
Confidence 9999999 9999974
No 38
>PF13964 Kelch_6: Kelch motif
Probab=98.49 E-value=2.2e-07 Score=48.68 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=31.7
Q ss_pred cccceeeEEECC--eEEeccCC-ceeeccee-----cCCeEEeeeC
Q psy11470 76 HRHGLGKASLHI--YIQNVPEG-LVYHKAMS-----SRKWRIVQVK 113 (114)
Q Consensus 76 ~r~~~~~~~~~~--yv~GG~~~-~~~~~~~~-----~~~W~~~~~~ 113 (114)
+|..++++++++ |++||..+ ...++.++ +++|+++++|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~m 46 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPM 46 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCC
Confidence 578899999999 99999977 45566666 9999999987
No 39
>smart00612 Kelch Kelch domain.
Probab=98.43 E-value=3.2e-07 Score=46.84 Aligned_cols=32 Identities=34% Similarity=0.687 Sum_probs=29.2
Q ss_pred eEEEEECCCCcEEEecCCcccccceeEEEECC
Q psy11470 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNG 33 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 33 (114)
++++||+.+++|+.+++|+.+|..++++++++
T Consensus 16 ~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 16 SVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred eEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 68999999999999999999999999888764
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.34 E-value=9.5e-07 Score=46.13 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=30.6
Q ss_pred cccceeeEEECC--eEEecc---CCceeeccee-----cCCeEEeeeCC
Q psy11470 76 HRHGLGKASLHI--YIQNVP---EGLVYHKAMS-----SRKWRIVQVKG 114 (114)
Q Consensus 76 ~r~~~~~~~~~~--yv~GG~---~~~~~~~~~~-----~~~W~~~~~~g 114 (114)
+|..|+++++++ |++||. ......++++ +++|+.+++||
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 578899999999 999999 3333344444 99999999987
No 41
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.25 E-value=1.9e-06 Score=44.98 Aligned_cols=31 Identities=39% Similarity=0.623 Sum_probs=28.1
Q ss_pred CeEEEEECCCCcEEEecCCcccccceeEEEE
Q psy11470 1 MSIEVFEIRANTWTEIGHLRNRRLQFGAEVL 31 (114)
Q Consensus 1 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 31 (114)
+++|+||+.+++|++++++|.+|..|+++++
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 4789999999999999999999999998863
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=97.95 E-value=8.4e-06 Score=42.32 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=21.1
Q ss_pred cccceeeEEEC-C--eEEeccCCc-eeeccee-----cCCeEEeeeC
Q psy11470 76 HRHGLGKASLH-I--YIQNVPEGL-VYHKAMS-----SRKWRIVQVK 113 (114)
Q Consensus 76 ~r~~~~~~~~~-~--yv~GG~~~~-~~~~~~~-----~~~W~~~~~~ 113 (114)
+|..|+++.++ + |++||.+.. ..+++++ +++|+++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCC
Confidence 58899999985 5 999998654 4566666 8999999876
No 43
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.78 E-value=0.00013 Score=50.35 Aligned_cols=82 Identities=17% Similarity=0.284 Sum_probs=60.1
Q ss_pred EEEECCCCcEEEecCCcccccceeEEEE-CCEEEEEecCCCCCCcCeEEEEeCCC----CcCCcccceeEEcC-CCCCcc
Q psy11470 4 EVFEIRANTWTEIGHLRNRRLQFGAEVL-NGKIHVVGGRDGLKTVNTFEYLNTHS----DMKDRIEVTWTSLP-SMLTHR 77 (114)
Q Consensus 4 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~t----~~~~~~~~~W~~~~-~~~~~r 77 (114)
-.||+.+++++.+.. ...-...+.+.+ |+++.++||... -.+.+..|++.+ . .|...+ .|..+|
T Consensus 49 ~~yD~~tn~~rpl~v-~td~FCSgg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~-------~w~e~~~~m~~~R 118 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTV-QTDTFCSGGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTC-------DWTESPNDMQSGR 118 (243)
T ss_pred EEEecCCCcEEeccC-CCCCcccCcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCC-------CceECcccccCCC
Confidence 369999999988754 222222222333 899999999854 345677788765 5 798876 488999
Q ss_pred cceeeEEECC---eEEeccCC
Q psy11470 78 HGLGKASLHI---YIQNVPEG 95 (114)
Q Consensus 78 ~~~~~~~~~~---yv~GG~~~ 95 (114)
.+.++..+.+ +|+||...
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~ 139 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNN 139 (243)
T ss_pred ccccceECCCCCEEEEeCcCC
Confidence 9999999977 99999864
No 44
>KOG2437|consensus
Probab=97.54 E-value=4.6e-05 Score=57.25 Aligned_cols=86 Identities=14% Similarity=0.109 Sum_probs=66.5
Q ss_pred eEEEEECCCCcEEEe---cCCcccccceeEEEECC--EEEEEecCCC------CCCcCeEEEEeCCCCcCCcccceeEEc
Q psy11470 2 SIEVFEIRANTWTEI---GHLRNRRLQFGAEVLNG--KIHVVGGRDG------LKTVNTFEYLNTHSDMKDRIEVTWTSL 70 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~---~~~~~~~~~~~~~~~~~--~iyv~GG~~~------~~~~~~~~~~d~~t~~~~~~~~~W~~~ 70 (114)
++|.|+...+.|..+ ...|..|..|.++..-. ++|+.|-+-+ .....++++||..++ .|.-+
T Consensus 289 DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~-------~W~~l 361 (723)
T KOG2437|consen 289 DFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTN-------TWMLL 361 (723)
T ss_pred HHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCc-------eeEEe
Confidence 568999999999876 33577788888888755 9999997632 223568999999999 99988
Q ss_pred CC------CCCcccceeeEEECC----eEEeccC
Q psy11470 71 PS------MLTHRHGLGKASLHI----YIQNVPE 94 (114)
Q Consensus 71 ~~------~~~~r~~~~~~~~~~----yv~GG~~ 94 (114)
+- -|....-|.+++..+ ||+||..
T Consensus 362 s~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 362 SEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred cccccccCCcceeecceeeEecCcceEEEecCee
Confidence 52 355566788888766 9999964
No 45
>KOG2437|consensus
Probab=97.43 E-value=6.9e-05 Score=56.31 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=57.8
Q ss_pred cccccceeEEEECC--EEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcC---CCCCcccceeeEEECC----eEE
Q psy11470 20 RNRRLQFGAEVLNG--KIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLP---SMLTHRHGLGKASLHI----YIQ 90 (114)
Q Consensus 20 ~~~~~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~---~~~~~r~~~~~~~~~~----yv~ 90 (114)
|-.|.+|.++..++ .||+.||.++.+.+.+++.|+-..+ .|..+. ..|..|.+|-++.... |+.
T Consensus 258 p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~-------~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLl 330 (723)
T KOG2437|consen 258 PGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKEN-------QWTCINRDTEGPGARSCHRMVIDISRRKLYLL 330 (723)
T ss_pred ccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcc-------eeEEeecCCCCCcchhhhhhhhhhhHhHHhhh
Confidence 34589999999855 9999999999999999999999999 998774 4788999999886533 999
Q ss_pred eccCC
Q psy11470 91 NVPEG 95 (114)
Q Consensus 91 GG~~~ 95 (114)
|-+-+
T Consensus 331 G~Y~~ 335 (723)
T KOG2437|consen 331 GRYLD 335 (723)
T ss_pred hhccc
Confidence 87644
No 46
>PLN02772 guanylate kinase
Probab=97.35 E-value=0.0012 Score=48.69 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=41.0
Q ss_pred eEEEEECCCCcEEEe---cCCcccccceeEEEE-CCEEEEEecCCCCCCcCeEEEEeCC
Q psy11470 2 SIEVFEIRANTWTEI---GHLRNRRLQFGAEVL-NGKIHVVGGRDGLKTVNTFEYLNTH 56 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~---~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~ 56 (114)
.+++||..+++|... ...|.+|.+|+++++ +++|+|+++.... ..++|.+...
T Consensus 52 ~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--~~~~w~l~~~ 108 (398)
T PLN02772 52 GVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--DDSIWFLEVD 108 (398)
T ss_pred eEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC--ccceEEEEcC
Confidence 589999999999875 456888999999999 6899999976432 3556655443
No 47
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.35 E-value=0.0067 Score=41.11 Aligned_cols=79 Identities=11% Similarity=0.123 Sum_probs=50.2
Q ss_pred eEEEEECCCCcEEEecCCccc-ccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCCCCCcc---
Q psy11470 2 SIEVFEIRANTWTEIGHLRNR-RLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHR--- 77 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~~~~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~~r--- 77 (114)
.+++|+..++.|+.+...+.. ......+.++|.||-+...........+..||..++ +|....++|..+
T Consensus 71 ~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E-------~f~~~i~~P~~~~~~ 143 (230)
T TIGR01640 71 EHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSE-------RFKEFIPLPCGNSDS 143 (230)
T ss_pred cEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccc-------eEeeeeecCcccccc
Confidence 468999999999998743322 111226678999998764322122237999999999 999522334322
Q ss_pred -cceeeEEECC
Q psy11470 78 -HGLGKASLHI 87 (114)
Q Consensus 78 -~~~~~~~~~~ 87 (114)
....++.+++
T Consensus 144 ~~~~~L~~~~G 154 (230)
T TIGR01640 144 VDYLSLINYKG 154 (230)
T ss_pred ccceEEEEECC
Confidence 2345666777
No 48
>PF13854 Kelch_5: Kelch motif
Probab=97.27 E-value=0.00061 Score=34.25 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.5
Q ss_pred CCCcccceeeEEECC--eEEeccCC
Q psy11470 73 MLTHRHGLGKASLHI--YIQNVPEG 95 (114)
Q Consensus 73 ~~~~r~~~~~~~~~~--yv~GG~~~ 95 (114)
+|.+|..|+++++++ |++||...
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~ 25 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG 25 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC
Confidence 478899999999999 99999874
No 49
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.82 E-value=0.038 Score=39.14 Aligned_cols=103 Identities=13% Similarity=0.172 Sum_probs=59.1
Q ss_pred eEEEEECCCCcEEEecCCcccccceeEEEE-CCEEEEEecCCCCC-CcCeEEEEeCCCCcCCcccceeEEcCC-----CC
Q psy11470 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVL-NGKIHVVGGRDGLK-TVNTFEYLNTHSDMKDRIEVTWTSLPS-----ML 74 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~-~~~~~~~~d~~t~~~~~~~~~W~~~~~-----~~ 74 (114)
.+..||+.+.+|..+..--... -...... +++||+.|-..-.. ....+..||..+. +|..++. +|
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~-------~w~~~~~~~s~~ip 88 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ-------TWSSLGGGSSNSIP 88 (281)
T ss_pred EEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC-------eeeecCCcccccCC
Confidence 4678999999999887641111 1222223 67888877543222 4667889999999 9998876 23
Q ss_pred CcccceeeEEECC--eEEeccC--CceeecceecCCeEEeee
Q psy11470 75 THRHGLGKASLHI--YIQNVPE--GLVYHKAMSSRKWRIVQV 112 (114)
Q Consensus 75 ~~r~~~~~~~~~~--yv~GG~~--~~~~~~~~~~~~W~~~~~ 112 (114)
.+.....+...+. +.++|.. +...+...+-.+|..+..
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred CcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccc
Confidence 3432222222233 5544442 222233333667877654
No 50
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.18 E-value=0.24 Score=35.97 Aligned_cols=73 Identities=15% Similarity=0.098 Sum_probs=47.1
Q ss_pred EEEEECCCCcEEEecCCcccccceeEEEECCEEEEEecCCCCCCc-----CeEEEEeCC--CC-cCCcccceeEEcCCCC
Q psy11470 3 IEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTV-----NTFEYLNTH--SD-MKDRIEVTWTSLPSML 74 (114)
Q Consensus 3 ~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~-----~~~~~~d~~--t~-~~~~~~~~W~~~~~~~ 74 (114)
..+||..+..-...|.++.+...-.+..++++||+.-........ ..++++... .. ......|.|..+|+.|
T Consensus 88 t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PP 167 (342)
T PF07893_consen 88 TLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPPP 167 (342)
T ss_pred eEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCCCC
Confidence 468999998888888877776666777789999999876422211 166666322 10 0122446899998755
Q ss_pred C
Q psy11470 75 T 75 (114)
Q Consensus 75 ~ 75 (114)
-
T Consensus 168 f 168 (342)
T PF07893_consen 168 F 168 (342)
T ss_pred c
Confidence 3
No 51
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=96.04 E-value=0.049 Score=38.69 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=48.8
Q ss_pred ecCCcccccceeEEEE----CCEEEEEecCCC----CC----------CcCeEEEEeCCCCcCCccccee--EEcCCCCC
Q psy11470 16 IGHLRNRRLQFGAEVL----NGKIHVVGGRDG----LK----------TVNTFEYLNTHSDMKDRIEVTW--TSLPSMLT 75 (114)
Q Consensus 16 ~~~~~~~~~~~~~~~~----~~~iyv~GG~~~----~~----------~~~~~~~~d~~t~~~~~~~~~W--~~~~~~~~ 75 (114)
+..+|.+|++|++.++ ..-..++||+.- .+ ....|+..|+.-. .. -.+|.+..
T Consensus 81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFG-------C~tah~lpEl~d 153 (337)
T PF03089_consen 81 VGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFG-------CCTAHTLPELQD 153 (337)
T ss_pred cCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEecccc-------ccccccchhhcC
Confidence 4678999999999887 345668899742 11 1235566666555 33 23456666
Q ss_pred cccceeeEEECC--eEEeccC
Q psy11470 76 HRHGLGKASLHI--YIQNVPE 94 (114)
Q Consensus 76 ~r~~~~~~~~~~--yv~GG~~ 94 (114)
+-+.|.+.+-+| |++||..
T Consensus 154 G~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 154 GQSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred CeEEEEEEecCceEEEEccEE
Confidence 777777777777 9999974
No 52
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=95.17 E-value=0.51 Score=31.88 Aligned_cols=79 Identities=11% Similarity=0.117 Sum_probs=44.7
Q ss_pred eEEEEECCCCcEEEecCCccccc---c-eeEEEECC-----EEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCC
Q psy11470 2 SIEVFEIRANTWTEIGHLRNRRL---Q-FGAEVLNG-----KIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPS 72 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~~~~~~~---~-~~~~~~~~-----~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~ 72 (114)
.+.++||.|..|..+|.++.++. . ..+..++. +|..+...........+++|+..++ +|+.+..
T Consensus 15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~-------~Wr~~~~ 87 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSN-------SWRTIEC 87 (230)
T ss_pred cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCC-------Ccccccc
Confidence 46789999999999986544211 1 01111221 4443332211123457899999999 9999874
Q ss_pred CCCc-ccceeeEEECC
Q psy11470 73 MLTH-RHGLGKASLHI 87 (114)
Q Consensus 73 ~~~~-r~~~~~~~~~~ 87 (114)
.+.. ......+.+++
T Consensus 88 ~~~~~~~~~~~v~~~G 103 (230)
T TIGR01640 88 SPPHHPLKSRGVCING 103 (230)
T ss_pred CCCCccccCCeEEECC
Confidence 3321 11112566777
No 53
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=93.32 E-value=0.15 Score=35.37 Aligned_cols=41 Identities=29% Similarity=0.562 Sum_probs=33.5
Q ss_pred eEEEEECCC----CcEEEec-CCcccccceeEEEE-CCEEEEEecCC
Q psy11470 2 SIEVFEIRA----NTWTEIG-HLRNRRLQFGAEVL-NGKIHVVGGRD 42 (114)
Q Consensus 2 ~~~~yd~~~----~~W~~~~-~~~~~~~~~~~~~~-~~~iyv~GG~~ 42 (114)
.+..|+|.. .+|.+.+ .|..+|+..++..+ |++++|+||..
T Consensus 92 ~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 92 AIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred ceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcC
Confidence 356677765 6898876 48889999998888 89999999986
No 54
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.51 E-value=2.1 Score=30.18 Aligned_cols=80 Identities=13% Similarity=0.059 Sum_probs=49.6
Q ss_pred CeEEEEECCCCcEEEecCCcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCCCCCcccce
Q psy11470 1 MSIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHGL 80 (114)
Q Consensus 1 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~~r~~~ 80 (114)
|++..||+.+.+-....++|..-.+=+++.++++||.+= =..+...+||+.+- ..+...+.+..+.
T Consensus 68 S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLT-----Wk~~~~f~yd~~tl---------~~~~~~~y~~EGW 133 (264)
T PF05096_consen 68 SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLT-----WKEGTGFVYDPNTL---------KKIGTFPYPGEGW 133 (264)
T ss_dssp EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEE-----SSSSEEEEEETTTT---------EEEEEEE-SSS--
T ss_pred EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEE-----ecCCeEEEEccccc---------eEEEEEecCCcce
Confidence 467899999998777777777666677888899999863 13457888998766 2233334445666
Q ss_pred eeEEECC--eEEeccC
Q psy11470 81 GKASLHI--YIQNVPE 94 (114)
Q Consensus 81 ~~~~~~~--yv~GG~~ 94 (114)
+++.-+. ++..|.+
T Consensus 134 GLt~dg~~Li~SDGS~ 149 (264)
T PF05096_consen 134 GLTSDGKRLIMSDGSS 149 (264)
T ss_dssp EEEECSSCEEEE-SSS
T ss_pred EEEcCCCEEEEECCcc
Confidence 7774444 4555643
No 55
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=84.92 E-value=6.8 Score=23.99 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=41.3
Q ss_pred eEEEEECCCCcEEEecCC---cccccceeEEEECCEEEEEecCCCCC-CcCeEEEEe-CCCCcCCcccceeEEc
Q psy11470 2 SIEVFEIRANTWTEIGHL---RNRRLQFGAEVLNGKIHVVGGRDGLK-TVNTFEYLN-THSDMKDRIEVTWTSL 70 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~~---~~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d-~~t~~~~~~~~~W~~~ 70 (114)
.+.+||.++.+|+.+..+ .........+.++|+|.++.-..... ..-++++.+ ..++ +|++.
T Consensus 21 ~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~-------~Wsk~ 87 (129)
T PF08268_consen 21 VIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQ-------EWSKK 87 (129)
T ss_pred EEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccc-------eEEEE
Confidence 367999999999988653 22355566777899998876433221 234666664 5566 89875
No 56
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=84.15 E-value=6.2 Score=28.40 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=16.8
Q ss_pred ccccceeEEEECCEEEEEecCC
Q psy11470 21 NRRLQFGAEVLNGKIHVVGGRD 42 (114)
Q Consensus 21 ~~~~~~~~~~~~~~iyv~GG~~ 42 (114)
-....|.+.+-++.||++||..
T Consensus 153 dG~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 153 DGQSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred CCeEEEEEEecCceEEEEccEE
Confidence 3455566666799999999985
No 57
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.01 E-value=11 Score=26.82 Aligned_cols=69 Identities=10% Similarity=0.072 Sum_probs=37.9
Q ss_pred EEEecCCCCC--CcCeEEEEeCCCCcCCcccceeEEcCCCCCcccceeeEEECC--eEEecc---CC--ceeeccee--c
Q psy11470 36 HVVGGRDGLK--TVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHGLGKASLHI--YIQNVP---EG--LVYHKAMS--S 104 (114)
Q Consensus 36 yv~GG~~~~~--~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~~r~~~~~~~~~~--yv~GG~---~~--~~~~~~~~--~ 104 (114)
||-|-+.... ....+..||+.+. +|..+..-... .-..+..+++ .+++|. ++ ...+-... +
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~-------qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~ 73 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNS-------QWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN 73 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCC-------EeecCCCCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC
Confidence 4433344333 4778999999999 99998764222 2223333434 555553 11 11222222 7
Q ss_pred CCeEEeee
Q psy11470 105 RKWRIVQV 112 (114)
Q Consensus 105 ~~W~~~~~ 112 (114)
++|..++.
T Consensus 74 ~~w~~~~~ 81 (281)
T PF12768_consen 74 QTWSSLGG 81 (281)
T ss_pred CeeeecCC
Confidence 78977653
No 58
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=79.44 E-value=19 Score=26.25 Aligned_cols=53 Identities=15% Similarity=0.073 Sum_probs=40.1
Q ss_pred EEEE-CCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCCCCCcccceeeEEECC--eEEecc
Q psy11470 28 AEVL-NGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHGLGKASLHI--YIQNVP 93 (114)
Q Consensus 28 ~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~~r~~~~~~~~~~--yv~GG~ 93 (114)
.+.+ +++|+.+... ....+||+.+. .-..+|.|+.+.....++.+++ |++...
T Consensus 71 F~al~gskIv~~d~~------~~t~vyDt~t~-------av~~~P~l~~pk~~pisv~VG~~LY~m~~~ 126 (342)
T PF07893_consen 71 FFALHGSKIVAVDQS------GRTLVYDTDTR-------AVATGPRLHSPKRCPISVSVGDKLYAMDRS 126 (342)
T ss_pred EEEecCCeEEEEcCC------CCeEEEECCCC-------eEeccCCCCCCCcceEEEEeCCeEEEeecc
Confidence 3444 8888887543 45789999999 8888888887776666777777 998764
No 59
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=77.07 E-value=14 Score=22.56 Aligned_cols=50 Identities=8% Similarity=0.003 Sum_probs=34.5
Q ss_pred EECCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCC---CCCcccceeeEEECC
Q psy11470 30 VLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPS---MLTHRHGLGKASLHI 87 (114)
Q Consensus 30 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~---~~~~r~~~~~~~~~~ 87 (114)
.+||-+|...-. .......+.+||..++ +|+.+.. .........++.++|
T Consensus 3 cinGvly~~a~~-~~~~~~~IvsFDv~~E-------~f~~i~~P~~~~~~~~~~~L~~~~G 55 (129)
T PF08268_consen 3 CINGVLYWLAWS-EDSDNNVIVSFDVRSE-------KFRFIKLPEDPYSSDCSSTLIEYKG 55 (129)
T ss_pred EECcEEEeEEEE-CCCCCcEEEEEEcCCc-------eEEEEEeeeeeccccCccEEEEeCC
Confidence 468888876544 3345678999999999 9976643 223445566777888
No 60
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=77.03 E-value=23 Score=25.10 Aligned_cols=75 Identities=15% Similarity=0.058 Sum_probs=47.1
Q ss_pred EEEEECCCC-----cEEEecCCcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccce-eEEcCCCCCc
Q psy11470 3 IEVFEIRAN-----TWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVT-WTSLPSMLTH 76 (114)
Q Consensus 3 ~~~yd~~~~-----~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~-W~~~~~~~~~ 76 (114)
+..|+.... +.+.+.....+-.-++.+.++++|.+.-| +.+.+|+...+ + +...+.+..+
T Consensus 64 i~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l~~~-------~~l~~~~~~~~~ 129 (321)
T PF03178_consen 64 ILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDLDNS-------KTLLKKAFYDSP 129 (321)
T ss_dssp EEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEEETT-------SSEEEEEEE-BS
T ss_pred EEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEccCc-------ccchhhheecce
Confidence 567777774 55555554444445667777888666443 57888998888 6 7777665554
Q ss_pred ccceeeEEECC-eEEe
Q psy11470 77 RHGLGKASLHI-YIQN 91 (114)
Q Consensus 77 r~~~~~~~~~~-yv~G 91 (114)
-......+.++ .++|
T Consensus 130 ~~i~sl~~~~~~I~vg 145 (321)
T PF03178_consen 130 FYITSLSVFKNYILVG 145 (321)
T ss_dssp SSEEEEEEETTEEEEE
T ss_pred EEEEEEeccccEEEEE
Confidence 45455556666 4455
No 61
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=73.40 E-value=20 Score=25.94 Aligned_cols=58 Identities=17% Similarity=0.345 Sum_probs=37.1
Q ss_pred eEEEEECCCCcEEEecCCc-ccccceeEEEE-CCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCC
Q psy11470 2 SIEVFEIRANTWTEIGHLR-NRRLQFGAEVL-NGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPS 72 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~~~-~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~ 72 (114)
++.+|||....|.+.+-.- .+|- +.+-+- .+++++. .-..+.+..||+.+. +...++.
T Consensus 255 ~l~rfdPs~~sW~eypLPgs~arp-ys~rVD~~grVW~s-----ea~agai~rfdpeta-------~ftv~p~ 314 (353)
T COG4257 255 SLHRFDPSVTSWIEYPLPGSKARP-YSMRVDRHGRVWLS-----EADAGAIGRFDPETA-------RFTVLPI 314 (353)
T ss_pred eeeEeCcccccceeeeCCCCCCCc-ceeeeccCCcEEee-----ccccCceeecCcccc-------eEEEecC
Confidence 4689999999998875321 2232 223222 3566552 234678899999999 8776643
No 62
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=67.30 E-value=42 Score=23.78 Aligned_cols=81 Identities=10% Similarity=0.024 Sum_probs=48.6
Q ss_pred eEEEEECCCCc-EEEecCCcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCCCCCcccce
Q psy11470 2 SIEVFEIRANT-WTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHGL 80 (114)
Q Consensus 2 ~~~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~~r~~~ 80 (114)
.+..|+....+ +...+.+..+-......+.++.|++ |-.. ..-.+..|+.... +-..++.-..++...
T Consensus 108 ~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~v-gD~~---~sv~~~~~~~~~~-------~l~~va~d~~~~~v~ 176 (321)
T PF03178_consen 108 KLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILV-GDAM---KSVSLLRYDEENN-------KLILVARDYQPRWVT 176 (321)
T ss_dssp EEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEE-EESS---SSEEEEEEETTTE--------EEEEEEESS-BEEE
T ss_pred EEEEEEccCcccchhhheecceEEEEEEeccccEEEE-EEcc---cCEEEEEEEccCC-------EEEEEEecCCCccEE
Confidence 46778888877 8877776655555666677887755 4321 1123445677556 677776655567766
Q ss_pred eeEEE-CC-eEEecc
Q psy11470 81 GKASL-HI-YIQNVP 93 (114)
Q Consensus 81 ~~~~~-~~-yv~GG~ 93 (114)
++..+ ++ .++++.
T Consensus 177 ~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 177 AAEFLVDEDTIIVGD 191 (321)
T ss_dssp EEEEE-SSSEEEEEE
T ss_pred EEEEecCCcEEEEEc
Confidence 66666 55 555554
No 63
>smart00284 OLF Olfactomedin-like domains.
Probab=61.09 E-value=52 Score=23.17 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=25.7
Q ss_pred CcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCC
Q psy11470 19 LRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSD 58 (114)
Q Consensus 19 ~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 58 (114)
+|.+-.+-+.++.++.+|..- .....+.+||+.+.
T Consensus 70 Lp~~~~GtG~VVYngslYY~~-----~~s~~iiKydL~t~ 104 (255)
T smart00284 70 LPHAGQGTGVVVYNGSLYFNK-----FNSHDICRFDLTTE 104 (255)
T ss_pred CCCccccccEEEECceEEEEe-----cCCccEEEEECCCC
Confidence 454555667788899998842 23578999999999
No 64
>KOG0316|consensus
Probab=59.20 E-value=35 Score=24.12 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=39.1
Q ss_pred CeEEEEECCCCcEEEecCCcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCC
Q psy11470 1 MSIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSD 58 (114)
Q Consensus 1 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 58 (114)
+++.++|.+++.-+++.-+...+.+.....+.+..+|.|..++ .+-.||....
T Consensus 123 ~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DG-----tvRtydiR~G 175 (307)
T KOG0316|consen 123 SSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG-----TVRTYDIRKG 175 (307)
T ss_pred ceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCC-----cEEEEEeecc
Confidence 3678999999999888888888888888888888878775432 3445555444
No 65
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=56.65 E-value=58 Score=22.75 Aligned_cols=36 Identities=14% Similarity=0.049 Sum_probs=26.4
Q ss_pred CCcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCC
Q psy11470 18 HLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSD 58 (114)
Q Consensus 18 ~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 58 (114)
.||.+-.+.+.++.++.+|.. ....+.+.+||+.+.
T Consensus 64 ~Lp~~~~GtG~vVYngslYY~-----~~~s~~IvkydL~t~ 99 (250)
T PF02191_consen 64 KLPYPWQGTGHVVYNGSLYYN-----KYNSRNIVKYDLTTR 99 (250)
T ss_pred EEeceeccCCeEEECCcEEEE-----ecCCceEEEEECcCC
Confidence 445555566677788888874 235789999999998
No 66
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=48.65 E-value=76 Score=20.85 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=35.3
Q ss_pred eEEEEECCCCc--EEEecCCcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeE-EcC
Q psy11470 2 SIEVFEIRANT--WTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWT-SLP 71 (114)
Q Consensus 2 ~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~-~~~ 71 (114)
.+.++|+.+.+ |+.-. +.+... .....++.||+.. ..+.+..+|..+.+. .|. ...
T Consensus 47 ~l~~~d~~tG~~~W~~~~--~~~~~~-~~~~~~~~v~v~~------~~~~l~~~d~~tG~~-----~W~~~~~ 105 (238)
T PF13360_consen 47 NLYALDAKTGKVLWRFDL--PGPISG-APVVDGGRVYVGT------SDGSLYALDAKTGKV-----LWSIYLT 105 (238)
T ss_dssp EEEEEETTTSEEEEEEEC--SSCGGS-GEEEETTEEEEEE------TTSEEEEEETTTSCE-----EEEEEE-
T ss_pred EEEEEECCCCCEEEEeec--cccccc-eeeeccccccccc------ceeeeEecccCCcce-----eeeeccc
Confidence 46889987766 65543 222111 2466788998865 123899999887744 698 443
No 67
>KOG2321|consensus
Probab=47.18 E-value=83 Score=25.11 Aligned_cols=32 Identities=13% Similarity=0.086 Sum_probs=20.8
Q ss_pred ccccceeEEEE--CCEEEEEecCCCCCCcCeEEEEeCCCC
Q psy11470 21 NRRLQFGAEVL--NGKIHVVGGRDGLKTVNTFEYLNTHSD 58 (114)
Q Consensus 21 ~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~t~ 58 (114)
.|+.+.-++.. ...||+.| .-.+++++|+...
T Consensus 132 IP~~GRDm~y~~~scDly~~g------sg~evYRlNLEqG 165 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVG------SGSEVYRLNLEQG 165 (703)
T ss_pred cCcCCccccccCCCccEEEee------cCcceEEEEcccc
Confidence 34444444443 56777765 3457899999999
No 68
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=42.85 E-value=1.3e+02 Score=21.95 Aligned_cols=78 Identities=13% Similarity=0.152 Sum_probs=36.5
Q ss_pred EEEEECCCCc--EEEecCCcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCCCCCcccce
Q psy11470 3 IEVFEIRANT--WTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHGL 80 (114)
Q Consensus 3 ~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~~r~~~ 80 (114)
+.++|+.+.+ |+.-. + ..+...+.+..++.||+.. ....+.++|+.+.+. .|+.-- +......
T Consensus 306 l~ald~~tG~~~W~~~~-~-~~~~~~sp~v~~g~l~v~~------~~G~l~~ld~~tG~~-----~~~~~~--~~~~~~s 370 (394)
T PRK11138 306 VYALDTRGGVELWSQSD-L-LHRLLTAPVLYNGYLVVGD------SEGYLHWINREDGRF-----VAQQKV--DSSGFLS 370 (394)
T ss_pred EEEEECCCCcEEEcccc-c-CCCcccCCEEECCEEEEEe------CCCEEEEEECCCCCE-----EEEEEc--CCCccee
Confidence 5566665543 54311 1 1112223344577777632 123577788887732 465421 1112222
Q ss_pred eeEEECC-eEEeccCC
Q psy11470 81 GKASLHI-YIQNVPEG 95 (114)
Q Consensus 81 ~~~~~~~-yv~GG~~~ 95 (114)
..++.++ .+++..++
T Consensus 371 ~P~~~~~~l~v~t~~G 386 (394)
T PRK11138 371 EPVVADDKLLIQARDG 386 (394)
T ss_pred CCEEECCEEEEEeCCc
Confidence 3345666 44554444
No 69
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=42.57 E-value=98 Score=20.39 Aligned_cols=51 Identities=10% Similarity=0.242 Sum_probs=28.3
Q ss_pred EEEEECCCCcEEEecCCcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCC
Q psy11470 3 IEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSD 58 (114)
Q Consensus 3 ~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 58 (114)
+..||.+. ..+..++....+...-.-++++.+++|..+ ....+..||..+.
T Consensus 85 v~lyd~~~---~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n--~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 85 VTLYDVKG---KKIFSFGTQPRNTISWSPDGRFLVLAGFGN--LNGDLEFWDVRKK 135 (194)
T ss_pred cEEEcCcc---cEeEeecCCCceEEEECCCCCEEEEEEccC--CCcEEEEEECCCC
Confidence 55677652 333333322223222233788888888753 2356888888766
No 70
>KOG0316|consensus
Probab=42.19 E-value=1.2e+02 Score=21.50 Aligned_cols=77 Identities=10% Similarity=0.195 Sum_probs=46.3
Q ss_pred EEEEECCCCcEEEecCCcccccceeEEEEC--CEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCCCCCcccce
Q psy11470 3 IEVFEIRANTWTEIGHLRNRRLQFGAEVLN--GKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHGL 80 (114)
Q Consensus 3 ~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~~r~~~ 80 (114)
|.++|..|.+-. ..+.......-++.+| ..+.+.|++ ..++.++|+.+. +-+++.-+..++...
T Consensus 83 v~vwDV~TGkv~--Rr~rgH~aqVNtV~fNeesSVv~Sgsf-----D~s~r~wDCRS~-------s~ePiQildea~D~V 148 (307)
T KOG0316|consen 83 VQVWDVNTGKVD--RRFRGHLAQVNTVRFNEESSVVASGSF-----DSSVRLWDCRSR-------SFEPIQILDEAKDGV 148 (307)
T ss_pred EEEEEcccCeee--eecccccceeeEEEecCcceEEEeccc-----cceeEEEEcccC-------CCCccchhhhhcCce
Confidence 566777665521 1111112222334443 456665654 357888999999 777777777788877
Q ss_pred eeEEECC-eEEecc
Q psy11470 81 GKASLHI-YIQNVP 93 (114)
Q Consensus 81 ~~~~~~~-yv~GG~ 93 (114)
.++.+.+ -+++|.
T Consensus 149 ~Si~v~~heIvaGS 162 (307)
T KOG0316|consen 149 SSIDVAEHEIVAGS 162 (307)
T ss_pred eEEEecccEEEeec
Confidence 7787877 555553
No 71
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=41.96 E-value=1.4e+02 Score=21.87 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=34.4
Q ss_pred eEEEEECCCCc--EEEecCCcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCC
Q psy11470 2 SIEVFEIRANT--WTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPS 72 (114)
Q Consensus 2 ~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~ 72 (114)
.++++|..+.+ |+.-..- + .....++.++.+|+..+ ...+..+|+.+.+. .|+.-..
T Consensus 131 ~l~ald~~tG~~~W~~~~~~--~-~~ssP~v~~~~v~v~~~------~g~l~ald~~tG~~-----~W~~~~~ 189 (394)
T PRK11138 131 QVYALNAEDGEVAWQTKVAG--E-ALSRPVVSDGLVLVHTS------NGMLQALNESDGAV-----KWTVNLD 189 (394)
T ss_pred EEEEEECCCCCCcccccCCC--c-eecCCEEECCEEEEECC------CCEEEEEEccCCCE-----eeeecCC
Confidence 46789987754 7654221 1 11223445788887432 34789999988843 6876543
No 72
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=41.76 E-value=91 Score=19.81 Aligned_cols=39 Identities=8% Similarity=0.131 Sum_probs=24.8
Q ss_pred EEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCCCC
Q psy11470 29 EVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSML 74 (114)
Q Consensus 29 ~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~ 74 (114)
+.++|.+|=+.-.........+..||..++ +..+..++|
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E-------~F~~~~~lP 40 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTE-------KFGRSLPLP 40 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEecccc-------ccCCEECCC
Confidence 567888886654433222227999999999 883333444
No 73
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=40.71 E-value=1.4e+02 Score=21.58 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=36.2
Q ss_pred EECCEEEEEecCCCC-C-CcCeEEEEeCC-CCcCCcccceeEEcCCCC-CcccceeeEEECC-eEEeccC
Q psy11470 30 VLNGKIHVVGGRDGL-K-TVNTFEYLNTH-SDMKDRIEVTWTSLPSML-THRHGLGKASLHI-YIQNVPE 94 (114)
Q Consensus 30 ~~~~~iyv~GG~~~~-~-~~~~~~~~d~~-t~~~~~~~~~W~~~~~~~-~~r~~~~~~~~~~-yv~GG~~ 94 (114)
..+++.++.|-.... . ..+.|..|.-. .+ .|..++..| ....-.=.+.+++ .++||..
T Consensus 34 ~~~Gk~~IaGRVE~Rdswe~S~V~fF~e~g~~-------~w~~v~~~~~~~LqDPF~t~I~gelifGGve 96 (298)
T PF08950_consen 34 EYNGKTVIAGRVEKRDSWEHSEVRFFEETGKD-------EWTPVEGAPVFQLQDPFVTRIQGELIFGGVE 96 (298)
T ss_dssp EETTEEEEEEEEE-TT-SS--EEEEEEEEETT-------EEEE-TT---BS-EEEEEEEETTEEEEEEEE
T ss_pred eECCEEEEEeeeecCCchhccEEEEEEEeCCC-------eEEECCCcceEEecCcceeeECCEEEEeeEE
Confidence 348888888865432 2 35667777655 77 999998744 3555556677888 9999963
No 74
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=39.13 E-value=14 Score=19.68 Aligned_cols=13 Identities=8% Similarity=0.414 Sum_probs=10.8
Q ss_pred EEEECCCCcEEEe
Q psy11470 4 EVFEIRANTWTEI 16 (114)
Q Consensus 4 ~~yd~~~~~W~~~ 16 (114)
..||+.|.+|+..
T Consensus 21 r~YD~~Tr~W~F~ 33 (55)
T PF07443_consen 21 RNYDPKTRKWNFS 33 (55)
T ss_pred cccCccceeeeee
Confidence 4699999999864
No 75
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=37.82 E-value=49 Score=15.56 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=15.0
Q ss_pred eEEEECCEEEEEecCCCCCCcCeEEEEeCCC
Q psy11470 27 GAEVLNGKIHVVGGRDGLKTVNTFEYLNTHS 57 (114)
Q Consensus 27 ~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t 57 (114)
+.++.++.||+... ...++++|+.|
T Consensus 16 ~~~v~~g~vyv~~~------dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTG------DGNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-T------TSEEEEEETT-
T ss_pred CCEEECCEEEEEcC------CCEEEEEeCCC
Confidence 34666888888543 45778888754
No 76
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=36.78 E-value=1.3e+02 Score=20.18 Aligned_cols=54 Identities=13% Similarity=0.148 Sum_probs=32.7
Q ss_pred eEEEEECCCCcEEEecCCcccccceeEEEE--CCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCCC
Q psy11470 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVL--NGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSM 73 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~ 73 (114)
.++.+|+.+..-..+.. +. ..+++.. ++.+|+... ..+.++|+.+. ++..+...
T Consensus 23 ~i~~~~~~~~~~~~~~~-~~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g-------~~~~~~~~ 78 (246)
T PF08450_consen 23 RIYRVDPDTGEVEVIDL-PG---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTG-------KVTVLADL 78 (246)
T ss_dssp EEEEEETTTTEEEEEES-SS---EEEEEEECTTSEEEEEET-------TCEEEEETTTT-------EEEEEEEE
T ss_pred EEEEEECCCCeEEEEec-CC---CceEEEEccCCEEEEEEc-------CceEEEecCCC-------cEEEEeec
Confidence 46778887776554433 22 2233443 688888653 23355688888 87776554
No 77
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=36.08 E-value=35 Score=15.34 Aligned_cols=15 Identities=27% Similarity=0.592 Sum_probs=9.3
Q ss_pred EEEECCEEEEEecCC
Q psy11470 28 AEVLNGKIHVVGGRD 42 (114)
Q Consensus 28 ~~~~~~~iyv~GG~~ 42 (114)
..++|+.+..+||.+
T Consensus 9 ~~vvD~~~a~vGg~n 23 (28)
T PF00614_consen 9 FVVVDDRVAFVGGAN 23 (28)
T ss_dssp EEEETTTEEEEE---
T ss_pred EEEEcCCEEEECcee
Confidence 456788888888875
No 78
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=36.03 E-value=1.7e+02 Score=21.21 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=35.5
Q ss_pred eEEEEECCCCc--EEEecCCcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCCC
Q psy11470 2 SIEVFEIRANT--WTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSM 73 (114)
Q Consensus 2 ~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~ 73 (114)
.+.++|+.+.+ |+................-+++||+ |..+. .+++||..+.++ .|..-.+.
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~-g~~~g-----~~y~ld~~~G~~-----~W~~~~~~ 141 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYV-GSWDG-----KLYALDASTGTL-----VWSRNVGG 141 (370)
T ss_pred cEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEE-ecccc-----eEEEEECCCCcE-----EEEEecCC
Confidence 36788998877 8665432011122223333788877 32222 789999976643 78776544
No 79
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=35.80 E-value=1.7e+02 Score=21.11 Aligned_cols=49 Identities=16% Similarity=0.301 Sum_probs=23.8
Q ss_pred eEEEEECCCCc--EEEecCCcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCC
Q psy11470 2 SIEVFEIRANT--WTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSD 58 (114)
Q Consensus 2 ~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 58 (114)
.+.++|..+.+ |+.-. +.. +.....+..++.||+.. ....+.++|+.+.
T Consensus 290 ~l~~~d~~tG~~~W~~~~-~~~-~~~ssp~i~g~~l~~~~------~~G~l~~~d~~tG 340 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDE-LKY-RQLTAPAVVGGYLVVGD------FEGYLHWLSREDG 340 (377)
T ss_pred eEEEEECCCCcEEEcccc-ccC-CccccCEEECCEEEEEe------CCCEEEEEECCCC
Confidence 35667765543 54311 111 11122233466666532 2346777888777
No 80
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=35.18 E-value=1.1e+02 Score=18.89 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=20.6
Q ss_pred EEEECCC-CcEEEecCCcccccceeEEEE--CCEEEEEe
Q psy11470 4 EVFEIRA-NTWTEIGHLRNRRLQFGAEVL--NGKIHVVG 39 (114)
Q Consensus 4 ~~yd~~~-~~W~~~~~~~~~~~~~~~~~~--~~~iyv~G 39 (114)
+.||+.+ ..-...+. +.+...+-+.+- ++.||++|
T Consensus 78 ~~Fdl~tgG~~~~gPa-~~~L~~ypv~ve~~~g~V~~~~ 115 (126)
T cd03476 78 SQFDPARGGQMVSGQA-TQNLPQIVLEYDEASGDIYAVG 115 (126)
T ss_pred CEEeCCCCCeEEcCCC-CCCCCeEEEEEECCCCEEEEEE
Confidence 4688864 35443332 233444555665 78999987
No 81
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=34.89 E-value=1.1e+02 Score=20.77 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=16.8
Q ss_pred CcEEEec--CCcccccceeEEEE-CCEEEEEec
Q psy11470 11 NTWTEIG--HLRNRRLQFGAEVL-NGKIHVVGG 40 (114)
Q Consensus 11 ~~W~~~~--~~~~~~~~~~~~~~-~~~iyv~GG 40 (114)
.+|+... .+|.+........+ ++.++++..
T Consensus 194 ~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 226 (275)
T PF13088_consen 194 RTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYN 226 (275)
T ss_dssp SS-EEEEEEECSSCCEEEEEEECTTSEEEEEEE
T ss_pred CcCCCceecccCcccCCceEEEcCCCCEEEEEE
Confidence 4688754 34554444444444 678887776
No 82
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.27 E-value=1.9e+02 Score=21.26 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=30.9
Q ss_pred EEEEECCCCcEEEecCCcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCC
Q psy11470 3 IEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSD 58 (114)
Q Consensus 3 ~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 58 (114)
+|..|.++..-+.+..-|.+. ++...|-.+|-+ .+...-...+.++|..+.
T Consensus 133 vy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~~g~~~i~~~Dli~~ 183 (339)
T PF09910_consen 133 VYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFHKGVSGIHCLDLISG 183 (339)
T ss_pred eEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--cccccCCceEEEEEccCC
Confidence 455666666666665555442 333444444433 333445789999999999
No 83
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=33.71 E-value=2.3e+02 Score=22.06 Aligned_cols=59 Identities=7% Similarity=0.161 Sum_probs=33.0
Q ss_pred eEEEEECCCCc--EEEec-CCccc-ccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCCcC
Q psy11470 2 SIEVFEIRANT--WTEIG-HLRNR-RLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMK 60 (114)
Q Consensus 2 ~~~~yd~~~~~--W~~~~-~~~~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~ 60 (114)
.+.++|.++.+ |+.-. .+... .....-++.++.||+-...........+..||..+.+.
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred EEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce
Confidence 36788887766 65432 11111 11223345688887643222223456788999988843
No 84
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=32.87 E-value=1.4e+02 Score=19.49 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=36.3
Q ss_pred eEEEEECCCCc--EEEecCCccccccee--EEEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcC
Q psy11470 2 SIEVFEIRANT--WTEIGHLRNRRLQFG--AEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLP 71 (114)
Q Consensus 2 ~~~~yd~~~~~--W~~~~~~~~~~~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~ 71 (114)
.+.++|+.+.+ |+.-. ........ .+..++.+|+.. ....+.++|+.+.+. .|+.-.
T Consensus 4 ~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~v~~~~------~~~~l~~~d~~tG~~-----~W~~~~ 64 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL--GPGIGGPVATAVPDGGRVYVAS------GDGNLYALDAKTGKV-----LWRFDL 64 (238)
T ss_dssp EEEEEETTTTEEEEEEEC--SSSCSSEEETEEEETTEEEEEE------TTSEEEEEETTTSEE-----EEEEEC
T ss_pred EEEEEECCCCCEEEEEEC--CCCCCCccceEEEeCCEEEEEc------CCCEEEEEECCCCCE-----EEEeec
Confidence 57889987766 77632 11122322 344688888863 456899999988833 576654
No 85
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=31.06 E-value=3.1e+02 Score=22.71 Aligned_cols=58 Identities=10% Similarity=0.229 Sum_probs=32.4
Q ss_pred eEEEEECCCCc--EEEecC-------------Cc----ccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCCcCCc
Q psy11470 2 SIEVFEIRANT--WTEIGH-------------LR----NRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDR 62 (114)
Q Consensus 2 ~~~~yd~~~~~--W~~~~~-------------~~----~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~~ 62 (114)
.+.++|+.+.+ |+.--. +| .+..+...+.-++.+|+.|.. ...+..||..+.+.
T Consensus 642 ~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~TagglvF~~gt~-----d~~l~A~D~~tGk~-- 714 (764)
T TIGR03074 642 YMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLATAGGLVFIGATQ-----DNYLRAYDLSTGKE-- 714 (764)
T ss_pred EEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEEEcCCEEEEEeCC-----CCEEEEEECCCCce--
Confidence 36678888876 765321 01 122222234445666653322 24789999988843
Q ss_pred ccceeEE
Q psy11470 63 IEVTWTS 69 (114)
Q Consensus 63 ~~~~W~~ 69 (114)
-|+.
T Consensus 715 ---lW~~ 718 (764)
T TIGR03074 715 ---LWKA 718 (764)
T ss_pred ---eeEe
Confidence 5765
No 86
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=29.62 E-value=60 Score=14.10 Aligned_cols=15 Identities=13% Similarity=0.423 Sum_probs=11.4
Q ss_pred EEEECCEEEEEecCC
Q psy11470 28 AEVLNGKIHVVGGRD 42 (114)
Q Consensus 28 ~~~~~~~iyv~GG~~ 42 (114)
..++|++..++|+.+
T Consensus 9 ~~v~D~~~~~iGs~N 23 (28)
T smart00155 9 LMIVDDEIAYIGSAN 23 (28)
T ss_pred EEEEcCCEEEEeCcc
Confidence 466788888888875
No 87
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=28.06 E-value=1.2e+02 Score=17.62 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=5.7
Q ss_pred eeEEEECCEEEE
Q psy11470 26 FGAEVLNGKIHV 37 (114)
Q Consensus 26 ~~~~~~~~~iyv 37 (114)
+-+..-++.|||
T Consensus 88 y~v~v~~g~v~V 99 (101)
T TIGR02377 88 YPVKVVDGAVYV 99 (101)
T ss_pred EeEEEECCEEEE
Confidence 334444555554
No 88
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=27.41 E-value=1e+02 Score=18.33 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=18.0
Q ss_pred EEEECCCCcEEEecCCcccccceeEEEECCEEEE
Q psy11470 4 EVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHV 37 (114)
Q Consensus 4 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv 37 (114)
+.||.+|......+.. +...|-+-+-++.|||
T Consensus 75 ~~Fdl~TG~~~~~~~~--~l~typV~ve~g~V~v 106 (108)
T PRK09511 75 QRFRLSDGLCMEDEQF--SVKHYDARVKDGVVQL 106 (108)
T ss_pred CEEECCCcccCCCCCc--cEeeEeEEEECCEEEE
Confidence 4678888765433222 2333444445788876
No 89
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=26.98 E-value=78 Score=19.55 Aligned_cols=15 Identities=20% Similarity=0.572 Sum_probs=12.6
Q ss_pred EEEEECCCCcEEEec
Q psy11470 3 IEVFEIRANTWTEIG 17 (114)
Q Consensus 3 ~~~yd~~~~~W~~~~ 17 (114)
++.||..++.|++..
T Consensus 31 vY~f~~~~~~W~K~~ 45 (122)
T PF06058_consen 31 VYKFDHETNEWEKTD 45 (122)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEeecCCCCcEeecC
Confidence 678899999999864
No 90
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=26.40 E-value=1.6e+02 Score=17.98 Aligned_cols=17 Identities=24% Similarity=0.573 Sum_probs=14.0
Q ss_pred eEEEEECCCCcEEEecC
Q psy11470 2 SIEVFEIRANTWTEIGH 18 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~ 18 (114)
.|..||+.++.|.....
T Consensus 10 ~Vm~~d~~tk~W~P~~~ 26 (111)
T cd01207 10 SVMVYDDSNKKWVPAGG 26 (111)
T ss_pred EeeEEcCCCCcEEcCCC
Confidence 47889999999987654
No 91
>KOG1445|consensus
Probab=25.89 E-value=92 Score=25.37 Aligned_cols=55 Identities=16% Similarity=0.130 Sum_probs=32.5
Q ss_pred eEEEEECCCCcEEEecC--Ccc-cccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCC
Q psy11470 2 SIEVFEIRANTWTEIGH--LRN-RRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSD 58 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~--~~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 58 (114)
.+.+|+|++..= .+.. -|. .|..-...++++++.|+-|++. ..-..+.+||.++-
T Consensus 743 ~~rVy~Prs~e~-pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk-~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 743 TLRVYEPRSREQ-PVYEGKGPVGTRGARILWACDGRIVIVVGFDK-SSERQVQMYDAQTL 800 (1012)
T ss_pred eEEEeCCCCCCC-ccccCCCCccCcceeEEEEecCcEEEEecccc-cchhhhhhhhhhhc
Confidence 356788877542 2211 122 2555566677999988888763 23445666665554
No 92
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=25.66 E-value=1.5e+02 Score=17.36 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=14.6
Q ss_pred EEEECCCCcEEEecCCcccccceeEEEECCEEEE
Q psy11470 4 EVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHV 37 (114)
Q Consensus 4 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv 37 (114)
+.||+++..-...+. ..+...+.+..-++.|||
T Consensus 67 ~~Fd~~tG~~~~~p~-~~~l~~y~v~v~~g~v~v 99 (106)
T PRK09965 67 ASFCLRTGKALCLPA-TDPLRTYPVHVEGGDIFI 99 (106)
T ss_pred CEEEcCCCCeeCCCC-CCCcceEeEEEECCEEEE
Confidence 346665555332111 112233444444666666
No 93
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=25.16 E-value=2.3e+02 Score=21.05 Aligned_cols=50 Identities=8% Similarity=0.115 Sum_probs=27.8
Q ss_pred eEEEEECCCCcEEEecCCcccccceeEEEE-CC--EEEEEecCCCCCCcCeEEEEeCCCC
Q psy11470 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVL-NG--KIHVVGGRDGLKTVNTFEYLNTHSD 58 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~--~iyv~GG~~~~~~~~~~~~~d~~t~ 58 (114)
+||+||+.+.+--.--++..+-. +..+- +. .||.+-+ ....+.+||..|.
T Consensus 270 eVWv~D~~t~krv~Ri~l~~~~~--Si~Vsqd~~P~L~~~~~-----~~~~l~v~D~~tG 322 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLEHPID--SIAVSQDDKPLLYALSA-----GDGTLDVYDAATG 322 (342)
T ss_dssp EEEEEETTTTEEEEEEEEEEEES--EEEEESSSS-EEEEEET-----TTTEEEEEETTT-
T ss_pred EEEEEECCCCeEEEEEeCCCccc--eEEEccCCCcEEEEEcC-----CCCeEEEEeCcCC
Confidence 68999999987433223333322 22222 32 5554321 2357999999998
No 94
>KOG2055|consensus
Probab=24.87 E-value=3.4e+02 Score=21.18 Aligned_cols=51 Identities=10% Similarity=0.017 Sum_probs=29.2
Q ss_pred EEEEecCCCCCCcCeEEEEeCCCCcCCcccceeEEcCCCCC--c--ccceeeEEECC-eEEeccCCce
Q psy11470 35 IHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLT--H--RHGLGKASLHI-YIQNVPEGLV 97 (114)
Q Consensus 35 iyv~GG~~~~~~~~~~~~~d~~t~~~~~~~~~W~~~~~~~~--~--r~~~~~~~~~~-yv~GG~~~~~ 97 (114)
..+++|+ .+-++.||..+. +-.++.++.. . ...|.+.-.+. .++.|.++..
T Consensus 272 ~i~~s~r-----rky~ysyDle~a-------k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I 327 (514)
T KOG2055|consen 272 VIFTSGR-----RKYLYSYDLETA-------KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHI 327 (514)
T ss_pred EEEeccc-----ceEEEEeecccc-------ccccccCCCCcccchhheeEecCCCCeEEEcccCceE
Confidence 5555544 346788999999 8777766432 1 22333333333 5677776544
No 95
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=24.36 E-value=1.2e+02 Score=17.56 Aligned_cols=16 Identities=6% Similarity=-0.006 Sum_probs=12.8
Q ss_pred eEEEEECCCCcEEEec
Q psy11470 2 SIEVFEIRANTWTEIG 17 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~ 17 (114)
.++.|||.+++.+.+.
T Consensus 38 Rll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 38 RLLRYDPSTKETTVLL 53 (89)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred CEEEEECCCCeEEEeh
Confidence 3689999999987663
No 96
>KOG2321|consensus
Probab=23.37 E-value=1.8e+02 Score=23.41 Aligned_cols=52 Identities=8% Similarity=0.108 Sum_probs=29.8
Q ss_pred eEEEEECCCCcEEEecCCcccccceeEEEECCEEEEEecCCCCCCcCeEEEEeCCCC
Q psy11470 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSD 58 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 58 (114)
+|+++|...+.|-..-....+..++....--..++.+|+.+ ..|+.+|+.+.
T Consensus 156 evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~-----g~VEfwDpR~k 207 (703)
T KOG2321|consen 156 EVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTED-----GVVEFWDPRDK 207 (703)
T ss_pred ceEEEEccccccccccccccccceeeeecCccceEEecccC-----ceEEEecchhh
Confidence 57788888777754333222222322222234566777643 46888888877
No 97
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=23.03 E-value=1.6e+02 Score=17.09 Aligned_cols=9 Identities=11% Similarity=0.390 Sum_probs=4.6
Q ss_pred EEECCCCcE
Q psy11470 5 VFEIRANTW 13 (114)
Q Consensus 5 ~yd~~~~~W 13 (114)
.||+.+...
T Consensus 72 ~Fdl~tG~~ 80 (103)
T cd03529 72 HFSLKTGRC 80 (103)
T ss_pred EEEcCCCCc
Confidence 455555544
No 98
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=22.57 E-value=2e+02 Score=17.76 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=20.7
Q ss_pred EEEECCCCcEEEecCCcc-------cccceeEEEECCEEEEEe
Q psy11470 4 EVFEIRANTWTEIGHLRN-------RRLQFGAEVLNGKIHVVG 39 (114)
Q Consensus 4 ~~yd~~~~~W~~~~~~~~-------~~~~~~~~~~~~~iyv~G 39 (114)
|.||..+.+...++..|. ....+-+...++.|||.=
T Consensus 81 w~Fdl~tG~~~~~~~~p~~~~~~~~~L~~ypv~~~~g~V~v~~ 123 (136)
T cd03548 81 WTYRLDDGKLVTILANPDDPLIGRTGLKTYPVEEAKGMIFVFV 123 (136)
T ss_pred cEEeCCCccEEEcccCCCccccccCCCceEeEEEECCEEEEEe
Confidence 568888887776533221 122344555677777753
No 99
>PRK02888 nitrous-oxide reductase; Validated
Probab=22.18 E-value=2.6e+02 Score=22.62 Aligned_cols=52 Identities=10% Similarity=-0.003 Sum_probs=34.2
Q ss_pred eEEEEECCC---CcEEEecCCcccccceeEEEE--CCEEEEEecCCCCCCcCeEEEEeCCCC
Q psy11470 2 SIEVFEIRA---NTWTEIGHLRNRRLQFGAEVL--NGKIHVVGGRDGLKTVNTFEYLNTHSD 58 (114)
Q Consensus 2 ~~~~yd~~~---~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~t~ 58 (114)
.|-+.|..+ ..+..+.-+|+++..|++.+- +.++|+.|+. .+++.++|..+.
T Consensus 297 ~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVankl-----S~tVSVIDv~k~ 353 (635)
T PRK02888 297 KVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKL-----SPTVTVIDVRKL 353 (635)
T ss_pred EEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCC-----CCcEEEEEChhh
Confidence 366778776 134556667888888888776 4566666543 456777777664
No 100
>KOG0271|consensus
Probab=21.84 E-value=3.7e+02 Score=20.57 Aligned_cols=41 Identities=17% Similarity=0.375 Sum_probs=27.3
Q ss_pred CCEEEEEecCCCCCCcCeEEEEeCCCCcC-Cc---------ccceeEEcCCCCCcc
Q psy11470 32 NGKIHVVGGRDGLKTVNTFEYLNTHSDMK-DR---------IEVTWTSLPSMLTHR 77 (114)
Q Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~-~~---------~~~~W~~~~~~~~~r 77 (114)
|++.+..|-. .++|..|||.+.+. |+ +...|.++-.-|..|
T Consensus 168 Dgk~iASG~~-----dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r 218 (480)
T KOG0271|consen 168 DGKKIASGSK-----DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR 218 (480)
T ss_pred Ccchhhcccc-----CCeEEEecCCCCCcccccccCcccceeEEeecccccCCCcc
Confidence 7777666533 35788899998863 33 446677776656555
No 101
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=21.80 E-value=1.7e+02 Score=17.00 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=13.8
Q ss_pred EEEECCCCcEEEecCCcccccceeEEEECCEEEE
Q psy11470 4 EVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHV 37 (114)
Q Consensus 4 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv 37 (114)
+.||..+..-...+.. +...+.+..-++.|||
T Consensus 72 ~~Fdl~tG~~~~~~~~--~L~~y~v~v~~g~v~v 103 (105)
T TIGR02378 72 RNFRLEDGRCLEDDSG--SVRTYEVRVEDGRVYV 103 (105)
T ss_pred CEEEcCCccccCCCCc--cEeeEeEEEECCEEEE
Confidence 3566655543322211 2223334444666665
No 102
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=21.13 E-value=2.6e+02 Score=18.50 Aligned_cols=35 Identities=11% Similarity=-0.006 Sum_probs=16.5
Q ss_pred EEECCCCcEEEecCCcccccceeEEEE--CCEEEEEe
Q psy11470 5 VFEIRANTWTEIGHLRNRRLQFGAEVL--NGKIHVVG 39 (114)
Q Consensus 5 ~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~iyv~G 39 (114)
.||+.+..-....+.+.+...+....- .+.||.+|
T Consensus 124 ~FD~~tGg~v~~GPA~~pLp~~~L~~d~~~d~iyAvG 160 (171)
T cd03475 124 TYDPYKGGVVLTGPAPRPLPAVILEYDSSTDDLYAVG 160 (171)
T ss_pred EEeCCCCCeEcCCCCCCCcCEeEEEEeCCCCcEEEEe
Confidence 577766553332222222222323222 25788877
No 103
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=21.00 E-value=1.2e+02 Score=14.44 Aligned_cols=10 Identities=50% Similarity=0.627 Sum_probs=7.8
Q ss_pred CCEEEEEecC
Q psy11470 32 NGKIHVVGGR 41 (114)
Q Consensus 32 ~~~iyv~GG~ 41 (114)
++.|||.|-.
T Consensus 23 ~GNiYv~G~T 32 (38)
T PF06739_consen 23 NGNIYVTGYT 32 (38)
T ss_pred CCCEEEEEee
Confidence 5789999854
No 104
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=20.93 E-value=1e+02 Score=13.68 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=11.6
Q ss_pred cceeEEEE-CCEEEEEec
Q psy11470 24 LQFGAEVL-NGKIHVVGG 40 (114)
Q Consensus 24 ~~~~~~~~-~~~iyv~GG 40 (114)
..|.++.. ++.+|.+|-
T Consensus 8 ~~ht~al~~~g~v~~wG~ 25 (30)
T PF13540_consen 8 GYHTCALTSDGEVYCWGD 25 (30)
T ss_dssp SSEEEEEE-TTEEEEEE-
T ss_pred CCEEEEEEcCCCEEEEcC
Confidence 34555555 899999984
No 105
>COG4334 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.68 E-value=1.1e+02 Score=18.80 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=12.1
Q ss_pred EEEECCEEEEEecCC
Q psy11470 28 AEVLNGKIHVVGGRD 42 (114)
Q Consensus 28 ~~~~~~~iyv~GG~~ 42 (114)
.+.+|+.+||-|+..
T Consensus 41 ~v~vDgdLyVrgy~G 55 (131)
T COG4334 41 FVYVDGDLYVRGYRG 55 (131)
T ss_pred EEEECCceEEeecCc
Confidence 466799999999764
No 106
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=20.49 E-value=1.1e+02 Score=18.08 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=17.6
Q ss_pred EEEECCCCcEEEecCCcccccceeEEEECCEEEE
Q psy11470 4 EVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHV 37 (114)
Q Consensus 4 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv 37 (114)
+.||++|......+.. +..-|-+-+-++.|||
T Consensus 72 ~~f~L~tG~~~~~~~~--~l~~ypvrv~~g~V~V 103 (104)
T PF13806_consen 72 WRFDLRTGECLEDPDV--SLRTYPVRVEDGQVYV 103 (104)
T ss_dssp EEEETTTTEESSECSE--BSBEEEEEECTTEEEE
T ss_pred CeEECCCcCcCCCCCC--cEEeEEEEEECCEEEE
Confidence 4678777765443332 2233444444788876
No 107
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=20.17 E-value=1.7e+02 Score=16.03 Aligned_cols=15 Identities=20% Similarity=0.078 Sum_probs=11.4
Q ss_pred eEEEEECCCCcEEEe
Q psy11470 2 SIEVFEIRANTWTEI 16 (114)
Q Consensus 2 ~~~~yd~~~~~W~~~ 16 (114)
.|+.||+.+|.-..+
T Consensus 42 KIfkyd~~tNei~L~ 56 (63)
T PF14157_consen 42 KIFKYDEDTNEITLK 56 (63)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCeEEEE
Confidence 368899999886544
Done!