RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11470
(114 letters)
>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that the
Drosophila ring canal kelch protein is related to
Galactose Oxidase, for which a structure has been
solved. The kelch motif forms a beta sheet. Several of
these sheets associate to form a beta propeller
structure as found in pfam00064, pfam00400 and
pfam00415.
Length = 46
Score = 45.7 bits (109), Expect = 4e-08
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 22 RRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSM 73
R G VL GKI+V+GG DG +++++ E + ++ TW+ LPSM
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETN-------TWSKLPSM 45
>gnl|CDD|128874 smart00612, Kelch, Kelch domain.
Length = 47
Score = 39.5 bits (93), Expect = 1e-05
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 34 KIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHGLG 81
KI+VVGG DG + + + E + ++ WT LPSM T R G G
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETN-------KWTPLPSMPTPRSGHG 41
Score = 27.9 bits (63), Expect = 0.25
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNG 33
S+EV++ N WT + + R G V+NG
Sbjct: 16 SVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional.
Length = 534
Score = 37.4 bits (87), Expect = 6e-04
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKD 61
S+ ++ + +W ++ L R G V N +I+V+GG ++NT E + K
Sbjct: 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESW-KPGESK- 369
Query: 62 RIEVTWTSLPSMLTHRHGLGKASLHIYI 89
W P ++ R+ +++ I
Sbjct: 370 -----WREEPPLIFPRYNPCVVNVNNLI 392
Score = 34.7 bits (80), Expect = 0.005
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKD 61
++E F + N W++ L A +GKI+V+GG + + + + +++ + +
Sbjct: 407 TVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466
Query: 62 RIEVTWTSLPSMLTHRHGLGKASLHI 87
WT L S+ R ASL I
Sbjct: 467 ----KWTELSSLNFPR---INASLCI 485
Score = 33.6 bits (77), Expect = 0.013
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Query: 3 IEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDR 62
+E + N WTE+ L R+ + N KI+VVGG +N E + ++
Sbjct: 458 VESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN---- 513
Query: 63 IEVTWTSLPSMLTHRHGLGKASLHI 87
TWT L + SL
Sbjct: 514 ---TWT-----LFCKFPKVIGSLEK 530
Score = 25.5 bits (56), Expect = 8.4
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGG-RDGLKTVNTFEYLNTHSDMK 60
++E ++ + W E L R +N I+V+GG + + T E + +++
Sbjct: 359 TVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN-- 416
Query: 61 DRIEVTWTSLPSMLTHRHGLGKASLHIYI 89
W+ + +G I
Sbjct: 417 -----KWSKGSPLPISHYGGCAIYHDGKI 440
>gnl|CDD|193570 cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylornithine
deacetylase/succinyl-diaminopimelate desuccinylase
(ArgE/DapE)-like. Peptidase M20 acetylornithine
deacetylase/succinyl-diaminopimelate desuccinylase
(ArgE/DapE) like family of enzymes catalyze analogous
reactions and share a common activator, the metal ion
(usually Co2+ or Zn2+). ArgE catalyzes a broad range of
substrates, including N-acetylornithine,
alpha-N-acetylmethionine and alpha-N-formylmethionine,
while DapE catalyzes the hydrolysis of
N-succinyl-L,L-diaminopimelate (L,L-SDAP) to
L,L-diaminopimelate and succinate. Proteins in this
family are mostly bacterial and have been inferred by
homology as being related to both, ArgE and DapE. This
family also includes N-acetyl-L-citrulline deacetylase
(ACDase; acetylcitrulline deacetylase), a unique, novel
enzyme found in Xanthomonas campestris, a plant
pathogen, in which N-acetyl-L-ornithine is the
substrate for transcarbamoylation reaction, and the
product is N-acetyl-L-citrulline. Thus, in the arginine
biosynthesis pathway, ACDase subsequently catalyzes the
hydrolysis of N-acetyl-L-citrulline to acetate and
L-citrulline.
Length = 365
Score = 29.5 bits (67), Expect = 0.31
Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 3 IEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFE 51
EV R N IG R L +LNG + V D T + FE
Sbjct: 39 DEVAPGRPNLVATIGGGRGPTL-----LLNGHLDTVPVGDEDWTYDPFE 82
>gnl|CDD|165153 PHA02790, PHA02790, Kelch-like protein; Provisional.
Length = 480
Score = 29.6 bits (66), Expect = 0.35
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 10 ANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTS 69
+N W I + + RL N K++VVGG +V + + + W +
Sbjct: 296 SNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDA----------AWVN 345
Query: 70 LPSMLTHRHGLGKASLH--IYI 89
+PS+L R AS++ IY+
Sbjct: 346 MPSLLKPRCNPAVASINNVIYV 367
>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that Drosophila
ring canal kelch protein is related to Galactose
Oxidase for which a structure has been solved. The
kelch motif forms a beta sheet. Several of these sheets
associate to form a beta propeller structure as found
in pfam00064, pfam00400 and pfam00415.
Length = 48
Score = 27.3 bits (61), Expect = 0.41
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 30 VLNGKIHVVGGRDGLK--TVNTFEYLNTHSDMKDRIEVTWTSLPSM 73
V+ GK++VVGG GL + + L+ WT LP++
Sbjct: 9 VVGGKLYVVGGSTGLGDLSSSDLWVLDP-------ETNVWTELPAL 47
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional.
Length = 557
Score = 28.1 bits (62), Expect = 0.98
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRD------GLKTVNTFEY-LN 54
+IE + + + W + + +G VL+ I+++GGR + +N+ + +
Sbjct: 368 TIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427
Query: 55 THSDMK----DRIEVTWTSLPSMLT 75
THS K D + W +LP+ T
Sbjct: 428 THSSNKVIRYDTVNNIWETLPNFWT 452
>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain.
Length = 48
Score = 24.9 bits (55), Expect = 3.7
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 32 NGKIHVVGGRDGLKT-VNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHG 79
GKI+V GG T +N + ++ TW L + R G
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTN-------TWEKLGDLPGPRAG 42
>gnl|CDD|234324 TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2. This
protein is designated Asp2 because, along with SecY2,
SecA2, and other proteins it is part of the accessory
secretory protein system. The system is involved in the
export of serine-rich glycoproteins important for
virulence in a number of Gram-positive species,
including Streptococcus gordonii and Staphylococcus
aureus. This protein family is assigned to transport
rather than glycosylation function, but the specific
molecular role is unknown [Protein fate, Protein and
peptide secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 511
Score = 26.5 bits (59), Expect = 4.0
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 18 HLRNRRLQFGAEVLNGKIHVVGGRD 42
H R RL G +L G+ V R
Sbjct: 252 HKRWSRLGLGQFILGGQRLVDSKRQ 276
>gnl|CDD|176096 cd08544, Reeler, Reeler, the N-terminal domain of reelin,
F-spondin, and a variety of other proteins. This domain
is found at the N-terminus of F-spondin, a protein
attached to the extracellular matrix, which plays roles
in neuronal development and vascular remodelling. The
F-spondin reeler domain has been reported to bind
heparin. The reeler domain is also found at the
N-terminus of reelin, an extracellular glycoprotein
involved in the development of the brain cortex, and in
a variety of other eukaryotic proteins with different
domain architectures, including the animal
ferric-chelate reductase 1 or stromal cell-derived
receptor 2, a member of the cytochrome B561 family,
which reduces ferric iron before its transport from the
endosome to the cytoplasm. Also included is the insect
putative defense protein 1, which is expressed upon
bacterial infection and appears to contain a single
reeler domain.
Length = 135
Score = 25.8 bits (57), Expect = 4.1
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 37 VVGGRDGLKTVNTFEYLN--THSD--MKDRIEVTWTS 69
+ G K + N THS+ K + TWT+
Sbjct: 68 QLPPDSGTKLLTCCGSDNAVTHSNNSKKTSVTFTWTA 104
>gnl|CDD|239473 cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) are
zinc-containing enzymes that catalyze the reversible
hydration of carbon dioxide in a two-step mechanism in
which the nucleophilic attack of a zinc-bound hydroxide
ion on carbon dioxide is followed by the regeneration of
an active site by ionization of the zinc-bound water
molecule and removal of a proton from the active site.
CAs are ubiquitous enzymes involved in fundamental
processes like photosynthesis, respiration, pH
homeostasis and ion transport. There are three
evolutionarily distinct families of CAs (the alpha-,
beta-, and gamma-CAs) which show no significant sequence
identity or structural similarity. Within the beta-CA
family there are four evolutionarily distinct clades (A
through D). The beta-CAs are multimeric enzymes (forming
dimers,tetramers,hexamers and octamers) which are
present in higher plants, algae, fungi, archaea and
prokaryotes.
Length = 154
Score = 25.9 bits (58), Expect = 4.6
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 8 IRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGR 41
+RAN + LR+R V GK+ +VG
Sbjct: 110 VRANVKATVAKLRSRSPIIAELVAAGKLKIVGAY 143
>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain.
Length = 49
Score = 24.5 bits (54), Expect = 5.3
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 10/44 (22%)
Query: 32 NGKIHVVGGRDGLKTV--NTFEYLNTHSDMKDRIEVTWTSLPSM 73
+G++++ GG + +V + + + D+ TWT LPS+
Sbjct: 12 DGRLYLFGGENEDGSVLSDVWVF-----DLSTN---TWTRLPSL 47
>gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The
ATP-dependent DNA helicase RecQ of E. coli is about 600
residues long. This model represents bacterial proteins
with a high degree of similarity in domain architecture
and in primary sequence to E. coli RecQ. The model
excludes eukaryotic and archaeal proteins with RecQ-like
regions, as well as more distantly related bacterial
helicases related to RecQ [DNA metabolism, DNA
replication, recombination, and repair].
Length = 591
Score = 25.4 bits (56), Expect = 7.9
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 48 NTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHGL 80
+ L+T+ KD + W SL L L
Sbjct: 439 KGHDQLSTYGIGKDYTQKEWRSLIDQLIAEGLL 471
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.267 0.0802 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,778,866
Number of extensions: 475812
Number of successful extensions: 338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 22
Length of query: 114
Length of database: 10,937,602
Length adjustment: 78
Effective length of query: 36
Effective length of database: 7,477,990
Effective search space: 269207640
Effective search space used: 269207640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)