RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11470
(114 letters)
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway,
protein-binding, UBI degradation, UBL conjugation
pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Length = 301
Score = 82.7 bits (205), Expect = 1e-20
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKD 61
S+E ++ + W+ +G ++ R G V +G I+ +GG DGL +N+ E + H+
Sbjct: 129 SMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTG--- 185
Query: 62 RIEVTWTSLPSMLTHRHGLGKASL--HIYI 89
WT++ M T R G G A L HIY+
Sbjct: 186 ----HWTNVTPMATKRSGAGVALLNDHIYV 211
Score = 82.3 bits (204), Expect = 2e-20
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKD 61
S+E + IR ++WT + + R GA VL G+++ + G DG +++ E + D
Sbjct: 223 SVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID--- 279
Query: 62 RIEVTWTSLPSMLTHRHGLGKASLH 86
+W + SM T R G L
Sbjct: 280 ----SWEVVTSMGTQRCDAGVCVLR 300
Score = 78.1 bits (193), Expect = 8e-19
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKD 61
+E ++ + W+ + + +R + L+ +I+V+GG DG +++ E L+ +D
Sbjct: 32 VVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTAD--- 88
Query: 62 RIEVTWTSLPSMLTHRHGLGKASL--HIY 88
+ W S+ M R G +L IY
Sbjct: 89 -EDGVWYSVAPMNVRRGLAGATTLGDMIY 116
Score = 74.6 bits (184), Expect = 2e-17
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKD 61
S+E ++ WT + + +R G +LN I+VVGG DG +++ E N +D
Sbjct: 176 SVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTD--- 232
Query: 62 RIEVTWTSLPSMLTHRHGLGKASLH--IYI 89
+WT++ SM T R +G L +Y
Sbjct: 233 ----SWTTVTSMTTPRCYVGATVLRGRLYA 258
Score = 69.6 bits (171), Expect = 1e-15
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 12/93 (12%)
Query: 2 SIEVFEIRAN---TWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSD 58
S+E + A+ W + + RR GA L I+V GG DG + + E + + D
Sbjct: 79 SVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNID 138
Query: 59 MKDRIEVTWTSLPSMLTHRHGLGKASL--HIYI 89
W+ L M T R G G IY
Sbjct: 139 -------QWSMLGDMQTAREGAGLVVASGVIYC 164
Score = 45.4 bits (108), Expect = 5e-07
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 19 LRNRRLQFGAEVLNGKIHVVGGRDGLK-TVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHR 77
++ R + N + VVGG + ++ E + + W+ LPS+ R
Sbjct: 2 MQGPRTRARLGA-NEVLLVVGGFGSQQSPIDVVEKYDPKTQ-------EWSFLPSITRKR 53
Query: 78 HGLGKASLH--IYI 89
+ SLH IY+
Sbjct: 54 RYVASVSLHDRIYV 67
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo
sapiens}
Length = 302
Score = 81.2 bits (201), Expect = 5e-20
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKD 61
S+E ++ + W ++ L +RR + G + G + VGG +G V T + + D
Sbjct: 31 SVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKD--- 87
Query: 62 RIEVTWTSLPSMLTHRHGLGKASL--HIY 88
WTS+ +M R LG A L +Y
Sbjct: 88 ----QWTSVANMRDRRSTLGAAVLNGLLY 112
Score = 75.0 bits (185), Expect = 1e-17
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKD 61
++E + N WT I + RR G VLN ++ VGG DG + E + ++
Sbjct: 174 TVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTN--- 230
Query: 62 RIEVTWTSLPSMLTHRHGLGKASLH--IYI 89
W + M R G +++ +Y+
Sbjct: 231 ----AWRQVADMNMCRRNAGVCAVNGLLYV 256
Score = 75.0 bits (185), Expect = 1e-17
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKD 61
+++ ++ + WT + ++R+RR GA VLNG ++ VGG DG +++ E N S+
Sbjct: 78 TVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSN--- 134
Query: 62 RIEVTWTSLPSMLTHRHGLGKASLH--IYI 89
W + M T R +G + +Y
Sbjct: 135 ----EWFHVAPMNTRRSSVGVGVVGGLLYA 160
Score = 74.6 bits (184), Expect = 1e-17
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGL--KTVNTFEYLNTHSDM 59
S+E + I++N W + + RR G V+ G ++ VGG D + ++T E N ++
Sbjct: 125 SVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTN- 183
Query: 60 KDRIEVTWTSLPSMLTHRHGLGKASL--HIYI 89
WT + M T R G G L +Y
Sbjct: 184 ------EWTYIAEMSTRRSGAGVGVLNNLLYA 209
Score = 73.1 bits (180), Expect = 6e-17
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKD 61
S+EV++ N W ++ + R G +NG ++VVGG DG + + EY N +D
Sbjct: 221 SVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD--- 277
Query: 62 RIEVTWTSLPS-MLTHRHGLGKASLH 86
WT + S M T R G +
Sbjct: 278 ----KWTVVSSCMSTGRSYAGVTVID 299
Score = 44.2 bits (105), Expect = 1e-06
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 21 NRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHGL 80
+ R + + K+ VV G K + + E + + W + + + R
Sbjct: 3 SVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEE-------RWHQVAELPSRRCRA 55
Query: 81 GKASL--HIYI 89
G + ++
Sbjct: 56 GMVYMAGLVFA 66
Score = 35.3 bits (82), Expect = 0.002
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 2 SIEVFEIRANTWTEIGHLRN-RRLQFGAEVLNGKI 35
S+E + + WT + + R G V++ ++
Sbjct: 268 SVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 80.1 bits (198), Expect = 2e-19
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKD 61
S+E +E + W + + RR+ G VLN ++ VGG DG +N+ E +
Sbjct: 138 SVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERN--- 194
Query: 62 RIEVTWTSLPSMLTHRHGLGKASL--HIYI 89
W + +M T R G G L IY
Sbjct: 195 ----EWRMITAMNTIRSGAGVCVLHNCIYA 220
Score = 79.7 bits (197), Expect = 2e-19
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKD 61
S+E +++ TWT + +++RR G V G+I+V+GG DG +++ E + +D
Sbjct: 232 SVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD--- 288
Query: 62 RIEVTWTSLPSMLTHRHGLG 81
TW+ + M + R G+G
Sbjct: 289 ----TWSEVTRMTSGRSGVG 304
Score = 75.1 bits (185), Expect = 1e-17
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKD 61
S E + N W I + R G VL+ I+ GG DG +N+ E + ++
Sbjct: 185 SAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE--- 241
Query: 62 RIEVTWTSLPSMLTHRHGLGKASLH--IYI 89
TWT + M R LG IY+
Sbjct: 242 ----TWTFVAPMKHRRSALGITVHQGRIYV 267
Score = 73.9 bits (182), Expect = 3e-17
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKD 61
+++ + N W+ + R + G V++G I+ VGG G N+ E D
Sbjct: 91 ALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERD--- 147
Query: 62 RIEVTWTSLPSMLTHRHGLGKASL--HIYI 89
W + MLT R G+G A L +Y
Sbjct: 148 ----EWHLVAPMLTRRIGVGVAVLNRLLYA 173
Score = 73.1 bits (180), Expect = 6e-17
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGR----DGLKTVNTFEYLNTHS 57
+E + TW + L+ R V+ G ++ VGGR DG + + N +
Sbjct: 40 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99
Query: 58 DMKDRIEVTWTSLPSMLTHRHGLGKASL--HIY 88
+ W+ M R+ +G + HIY
Sbjct: 100 N-------QWSPCAPMSVPRNRIGVGVIDGHIY 125
Score = 45.0 bits (107), Expect = 8e-07
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 10/64 (15%)
Query: 28 AEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHGLGKASL-- 85
A + I+ GG ++++ E N + TW L + R GL +
Sbjct: 20 APKVGRLIYTAGGYFR-QSLSYLEAYNPSNG-------TWLRLADLQVPRSGLAGCVVGG 71
Query: 86 HIYI 89
+Y
Sbjct: 72 LLYA 75
Score = 29.6 bits (67), Expect = 0.19
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEV 30
S+E ++ +TW+E+ + + R G V
Sbjct: 279 SVECYDPDTDTWSEVTRMTSGRSGVGVAV 307
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural
genomics, structur genomics consortium, SGC, kelch
repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Length = 306
Score = 76.2 bits (188), Expect = 4e-18
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKD 61
S EV++ TWTE+ + R G + KI VGG++GL ++ EY + +
Sbjct: 170 SCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLN--- 226
Query: 62 RIEVTWTSLPSMLTHRHGLGKASLH--IYI 89
W + M + A++ +Y+
Sbjct: 227 ----EWKMVSPMPWKGVTVKCAAVGSIVYV 252
Score = 75.1 bits (185), Expect = 1e-17
Identities = 11/84 (13%), Positives = 30/84 (35%), Gaps = 7/84 (8%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKD 61
++E ++I+ N W + + + + + ++V+ G G+ + NT +D
Sbjct: 217 NVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD--- 273
Query: 62 RIEVTWTSLPSMLTHRHGLGKASL 85
W + + +
Sbjct: 274 ----KWVANSKVRAFPVTSCLICV 293
Score = 75.1 bits (185), Expect = 1e-17
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDG----LKTVNTFEYLNTHS 57
E ++ R +W + +R G NG I+V GG G + +N+ E + +
Sbjct: 119 LFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT 178
Query: 58 DMKDRIEVTWTSLPSMLTHRHGLGKASLH--IYI 89
+ TWT L M+ R G + I+
Sbjct: 179 E-------TWTELCPMIEARKNHGLVFVKDKIFA 205
Score = 73.5 bits (181), Expect = 4e-17
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 10/89 (11%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKD 61
S F + +WT+I +R + ++++GG + + N D
Sbjct: 25 SCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQL-FPIKRMDCYNVVKD--- 80
Query: 62 RIEVTWTSLPSMLTHRHGLGKASL--HIY 88
+W S T R L + IY
Sbjct: 81 ----SWYSKLGPPTPRDSLAACAAEGKIY 105
Score = 72.0 bits (177), Expect = 1e-16
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRD-GLKTVNTFEYLNTHSDMK 60
++ + + ++W R A GKI+ GG + G + FE +T ++
Sbjct: 71 RMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTE-- 128
Query: 61 DRIEVTWTSLPSMLTHRHGLGKASL--HIYI 89
+W + PSMLT R G IY+
Sbjct: 129 -----SWHTKPSMLTQRCSHGMVEANGLIYV 154
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding,
cytoskeleton; 1.78A {Homo sapiens}
Length = 315
Score = 76.3 bits (188), Expect = 5e-18
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKD 61
+ V++ + W E+ ++ R FGA V +G+I V G ++ E + +
Sbjct: 166 KMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN--- 222
Query: 62 RIEVTWTSLPSMLTHRHGLGKASLH--IYI 89
W + R L SL +Y
Sbjct: 223 ----KWAPFEAFPQERSSLSLVSLVGTLYA 248
Score = 72.8 bits (179), Expect = 8e-17
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 10/91 (10%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGR-DGLKTVNTFEYLNTHSDMK 60
S+ ++ + W E L ++V+GG+ K +N +
Sbjct: 118 SVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF-- 175
Query: 61 DRIEVTWTSLPSMLTHRHGLGKASL--HIYI 89
W L M T R G I +
Sbjct: 176 -----EWKELAPMQTARSLFGATVHDGRIIV 201
Score = 72.8 bits (179), Expect = 1e-16
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 12/93 (12%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGR---DGLKTVNTFEYLNTHSD 58
F+ + W + L + R FG I+VVGGR DG + +++ + S
Sbjct: 68 YFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSF 127
Query: 59 MKDRIEVTWTSLPSMLTHRHGLGKASLH--IYI 89
W + +G S +Y+
Sbjct: 128 -------KWGESDPLPYVVYGHTVLSHMDLVYV 153
Score = 72.4 bits (178), Expect = 1e-16
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 16/97 (16%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKT---------VNTFEY 52
S EV+ I N W R L G ++ +GG L+T +N
Sbjct: 213 SAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWR 272
Query: 53 LNTHSDMKDRIEVTWTSLPSMLTHRHGLGKASLHIYI 89
N W + + + G + + +
Sbjct: 273 YNEEEK-------KWEGVLREIAYAAGATFLPVRLNV 302
Score = 60.9 bits (148), Expect = 2e-12
Identities = 16/126 (12%), Positives = 33/126 (26%), Gaps = 24/126 (19%)
Query: 2 SIEVFEIRANTWTEIGH-LRNRRLQFGAEVLNGKIHVVGGRDGLKT------VNTFEYLN 54
++ AN + + ++ V GG + F +
Sbjct: 14 GAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFD 73
Query: 55 THSDMKDRIEVTWTSLPSMLTHRHGLGKASL--HIYI---QNVPEGLVYHKAM-----SS 104
W +P + + R G IY+ + + +G ++ S
Sbjct: 74 HLDS-------EWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLS 126
Query: 105 RKWRIV 110
KW
Sbjct: 127 FKWGES 132
Score = 43.5 bits (103), Expect = 2e-06
Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTV 47
I + W + GA L +++V+ + +
Sbjct: 269 DIWRYNEEEKKWEGVLREIAYAA--GATFLPVRLNVLRLTKMAENL 312
Score = 25.4 bits (56), Expect = 4.6
Identities = 4/61 (6%), Positives = 18/61 (29%), Gaps = 15/61 (24%)
Query: 31 LNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHGLGKASL--HIY 88
L I ++ Y + ++ + + S ++ + + ++
Sbjct: 3 LQDLIFMISEE------GAVAY-DPAANE------CYCASLSSQVPKNHVSLVTKENQVF 49
Query: 89 I 89
+
Sbjct: 50 V 50
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding,
invasion and metastasis, UBL conjugation pathway, UBL
protein folding; 2.00A {Rattus norvegicus}
Length = 318
Score = 75.5 bits (186), Expect = 1e-17
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKD 61
+ ++ + W ++ ++ R FG + GKI + GG + E + ++
Sbjct: 176 RVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTN--- 232
Query: 62 RIEVTWTSLPSMLTHRHGLGKASLH--IYI 89
W + R + SL +Y
Sbjct: 233 ----KWEVMTEFPQERSSISLVSLAGSLYA 258
Score = 73.9 bits (182), Expect = 4e-17
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGR-DGLKTVNTFEYLNTHSDMK 60
S+ ++ A W+E+ +L + NG I+ +GG+ D K N N
Sbjct: 128 SVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKG-- 185
Query: 61 DRIEVTWTSLPSMLTHRHGLGKASLH--IYI 89
W L M T R G A I I
Sbjct: 186 -----DWKDLAPMKTPRSMFGVAIHKGKIVI 211
Score = 73.2 bits (180), Expect = 6e-17
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRD--GLKTVNTFEYLNTHSDM 59
+ ++ W + L + R FG ++ KI+VV G+D ++++ + +
Sbjct: 79 YFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAA- 137
Query: 60 KDRIEVTWTSLPSMLTHRHGLGKASL--HIYI 89
W+ + ++ +G S IY
Sbjct: 138 ------KWSEVKNLPIKVYGHNVISHNGMIYC 163
Score = 69.7 bits (171), Expect = 1e-15
Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDM-- 59
S+E F+++ N W + R L G ++ +GG ++ + +D+
Sbjct: 223 SVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWK 282
Query: 60 KDRIEVTWTSLPSMLTHRHGLGKASLHIYI 89
+ + W + + + G + + +
Sbjct: 283 YEDDKKEWAGMLKEIRYASGASCLATRLNL 312
Score = 57.7 bits (140), Expect = 2e-11
Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 16/97 (16%)
Query: 1 MSIEVFEIRANTWTEIGH-LRNRRLQFGAEVLNGKIHVVGGRDGLKT------VNTFEYL 53
+ ++ N + R +++VVGG + + F L
Sbjct: 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQL 83
Query: 54 NTHSDMKDRIEVTWTSLPSMLTHRHGLGKASL--HIY 88
+ S W LP + + R G + IY
Sbjct: 84 DNVSS-------EWVGLPPLPSARCLFGLGEVDDKIY 113
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid
metabolism, kelch repeat, beta-propeller; HET: MSE;
1.50A {Escherichia coli}
Length = 357
Score = 53.4 bits (128), Expect = 8e-10
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 14/110 (12%)
Query: 2 SIEVFEIRANTWTEIG-HLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMK 60
+ + + N+W ++ H V NGK +V GG + FE LN
Sbjct: 87 DVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGK-- 144
Query: 61 DRIEVTWTSLPSMLTHRHGLGKASLHIYIQNVPEGLVYHKAMSSRKWRIV 110
T++ + H L + S+++W
Sbjct: 145 -----DSTAIDKINAHYFDKKAEDYFFN----KFLLSFD--PSTQQWSYA 183
Score = 47.2 bits (112), Expect = 1e-07
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 16/93 (17%)
Query: 6 FEIRANTWTEIGHLRN-RRLQFGAEVLNGKIHVVGGRD-----GLKTVNTFEYLNTHSDM 59
+ + WT + R Q + ++G ++V GG + N N ++
Sbjct: 38 TQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN- 96
Query: 60 KDRIEVTWTSLPSML-THRHGLGKASL--HIYI 89
+W L S G Y+
Sbjct: 97 ------SWVKLMSHAPMGMAGHVTFVHNGKAYV 123
Score = 46.5 bits (110), Expect = 3e-07
Identities = 13/83 (15%), Positives = 22/83 (26%), Gaps = 9/83 (10%)
Query: 2 SIEVFEIRANTWTEIGHL-RNRRLQFGAEVLNGKIHVVGGRD--GLKTVNTFEYLNTHSD 58
+ F+ W+ G K ++ G GL+T FE
Sbjct: 169 FLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFEL------ 222
Query: 59 MKDRIEVTWTSLPSMLTHRHGLG 81
+ W L + + G
Sbjct: 223 DFTGNNLKWNKLAPVSSPDGVAG 245
Score = 41.1 bits (96), Expect = 2e-05
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDG 43
S ++ W + G L R + N + ++GG
Sbjct: 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETA 327
Score = 39.5 bits (92), Expect = 7e-05
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 12/79 (15%)
Query: 14 TEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLPSM 73
+ + + N +++ G G + L+T + WT+L +
Sbjct: 1 SVLPETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDT-----QAKDKKWTALAAF 51
Query: 74 -LTHRHGLGKASL--HIYI 89
R A + ++Y+
Sbjct: 52 PGGPRDQATSAFIDGNLYV 70
Score = 33.4 bits (76), Expect = 0.008
Identities = 10/98 (10%), Positives = 25/98 (25%), Gaps = 14/98 (14%)
Query: 6 FEIRANTWTEIGHLRN--RRLQFGAEVLNGKIHVVGGRDGLKTVNTFE----YLNTHSDM 59
F W ++ + + A + N + GG + ++ Y +
Sbjct: 224 FTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKK 283
Query: 60 KDRIEV------TWTSLPSMLTHRHGLGKASLH--IYI 89
++ W + R + + I
Sbjct: 284 SYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLI 321
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence
form, precursor of copper enzyme., oxidoreductase; 1.40A
{Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB:
1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A
2eib_A 1t2x_A 2eid_A 2wq8_A
Length = 656
Score = 47.3 bits (111), Expect = 1e-07
Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 15/107 (14%)
Query: 1 MSIEVFEIRANTWTEIGHLRNRRLQFGAEVL-NGKIHVVGGR-DGLKTVNTFEYLNTHSD 58
+++ +++W ++ R + + +G++ +GG G E + S
Sbjct: 265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324
Query: 59 MKDRIEVTWTSLPSMLTHRH------GLGKASLHIYIQNVPEGLVYH 99
TWTSLP+ + GL ++ H ++ +G V+
Sbjct: 325 -------TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQ 364
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 37.0 bits (85), Expect = 5e-04
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVL-NGKIHVVGGRDGLKTVNTFEYLNTHSDMK 60
+F+++ W+ I L + R + A L +G + ++GG N ++
Sbjct: 469 DNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTE---GPAMLLYNVTEEIF 525
Query: 61 DRIEVTWTSLPSMLTHRH 78
+ + L
Sbjct: 526 KDVTPKDEFFQNSLVSAG 543
Score = 31.3 bits (70), Expect = 0.053
Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 17/91 (18%)
Query: 32 NGKIHVVGGRDG-LKTVNTFEYLNTHSDMKDRIEVTWTSLPSMLTHRHG-----LGKASL 85
N ++ ++GGR + ++ + + W+ + S+ R L ++
Sbjct: 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTR-------EWSMIKSLSHTRFRHSACSLPDGNV 503
Query: 86 HIY--IQNVPEGLVYHKAMSSRKWRIVQVKG 114
I + P L+Y+ ++ ++ V K
Sbjct: 504 LILGGVTEGPAMLLYN--VTEEIFKDVTPKD 532
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A
{Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB:
2cfz_A* 2cg2_A 2cg3_A*
Length = 658
Score = 27.7 bits (60), Expect = 1.1
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 35 IHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSLP---SMLTHRHG 79
I + G G V+T T + + P + +H H
Sbjct: 125 ITFIRGDSGWIVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHA 172
>3bww_A Protein of unknown function DUF692/COG3220; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI-2; HET: MSE; 2.20A
{Haemophilus somnus}
Length = 307
Score = 26.9 bits (59), Expect = 1.3
Identities = 14/68 (20%), Positives = 25/68 (36%)
Query: 2 SIEVFEIRANTWTEIGHLRNRRLQFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKD 61
I+ EI W ++G + AE + IH + G + E L++ M
Sbjct: 26 RIQFMEIAPENWIKMGGFARYQFDKVAEKIPILIHGLSLSLGGQAPLDKELLSSIKAMIK 85
Query: 62 RIEVTWTS 69
+ + S
Sbjct: 86 QYNTPFFS 93
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix,
winged-helix, protein-DNA complex, DNA-BIN helicase;
HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Length = 134
Score = 24.4 bits (53), Expect = 7.9
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 25 QFGAEVLNGKIHVVGGRDGLKTVNTFEYLNTHSDMKDRIEVTWTSL 70
+FG + I + G + + + + + KD+ E W +
Sbjct: 31 KFGIGLP---ILFLRGSNSQRLADQYRRHSLFGTGKDQTESWWKAF 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,820,534
Number of extensions: 95249
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 59
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)