Query psy11481
Match_columns 561
No_of_seqs 133 out of 530
Neff 2.5
Searched_HMMs 29240
Date Fri Aug 16 19:33:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nlw_A MAD protein, MAX dimeri 99.9 1.2E-22 4E-27 167.3 11.0 80 185-264 1-80 (80)
2 1nkp_A C-MYC, MYC proto-oncoge 99.9 2.1E-21 7.1E-26 161.9 10.3 82 184-265 5-86 (88)
3 1nkp_B MAX protein, MYC proto- 99.8 2.3E-19 8E-24 146.2 9.3 81 184-265 1-81 (83)
4 1hlo_A Protein (transcription 99.7 9.2E-17 3.1E-21 130.6 7.5 71 183-254 10-80 (80)
5 4ati_A MITF, microphthalmia-as 99.6 2.3E-16 7.8E-21 137.6 7.7 85 183-267 25-113 (118)
6 1am9_A Srebp-1A, protein (ster 99.6 7.6E-16 2.6E-20 126.5 9.8 71 184-256 5-75 (82)
7 3u5v_A Protein MAX, transcript 99.6 3.8E-16 1.3E-20 128.0 2.3 62 183-244 3-65 (76)
8 1an4_A Protein (upstream stimu 99.5 4.6E-15 1.6E-19 116.1 1.1 58 183-240 3-63 (65)
9 2ql2_B Neurod1, neurogenic dif 99.4 1.4E-12 4.9E-17 102.7 7.4 56 184-239 1-56 (60)
10 1a0a_A BHLH, protein (phosphat 99.3 2.1E-13 7.3E-18 108.0 2.3 55 185-239 2-60 (63)
11 1mdy_A Protein (MYOD BHLH doma 99.3 7.9E-13 2.7E-17 106.6 5.5 56 183-239 10-65 (68)
12 4h10_B Circadian locomoter out 99.3 2.3E-12 7.8E-17 105.2 7.4 57 184-242 7-63 (71)
13 4h10_A ARYL hydrocarbon recept 99.2 1.5E-11 5.1E-16 100.4 4.0 55 184-238 8-63 (73)
14 4ath_A MITF, microphthalmia-as 99.0 1.1E-09 3.7E-14 92.3 10.2 72 196-267 3-78 (83)
15 2lfh_A DNA-binding protein inh 98.9 4.2E-10 1.4E-14 91.9 2.6 49 190-238 19-67 (68)
16 4f3l_A Mclock, circadian locom 98.7 1.9E-08 6.3E-13 97.7 6.2 53 184-238 11-63 (361)
17 4f3l_B BMAL1B; BHLH, PAS, circ 98.5 7E-08 2.4E-12 95.1 4.2 54 184-237 12-66 (387)
18 4aya_A DNA-binding protein inh 98.4 5.7E-07 1.9E-11 77.7 6.6 48 193-240 33-80 (97)
19 2yy0_A C-MYC-binding protein; 94.6 0.042 1.4E-06 42.7 4.8 43 228-270 2-51 (53)
20 1a93_A Coiled coil, LZ, MYC pr 94.0 0.061 2.1E-06 39.2 4.2 32 234-265 3-34 (34)
21 1t2k_D Cyclic-AMP-dependent tr 93.1 0.32 1.1E-05 37.7 7.2 42 228-269 19-60 (61)
22 1gd2_E Transcription factor PA 93.0 0.17 5.6E-06 41.4 5.6 41 230-270 28-68 (70)
23 2wt7_A Proto-oncogene protein 92.0 0.56 1.9E-05 36.8 7.4 44 227-270 19-62 (63)
24 2jee_A YIIU; FTSZ, septum, coi 91.7 0.57 2E-05 39.6 7.5 47 226-273 15-68 (81)
25 1jnm_A Proto-oncogene C-JUN; B 91.1 0.29 1E-05 38.1 4.9 42 228-269 19-60 (62)
26 1ci6_A Transcription factor AT 87.6 1.5 5E-05 34.6 6.5 41 229-269 14-54 (63)
27 1hjb_A Ccaat/enhancer binding 87.3 0.96 3.3E-05 38.3 5.6 20 185-204 19-38 (87)
28 1a93_B MAX protein, coiled coi 86.9 0.36 1.2E-05 35.3 2.4 32 233-264 2-33 (34)
29 1gu4_A CAAT/enhancer binding p 85.0 1.6 5.3E-05 36.3 5.7 29 242-270 40-68 (78)
30 1ci6_A Transcription factor AT 83.3 4.2 0.00014 32.0 7.2 40 229-268 21-60 (63)
31 2wt7_B Transcription factor MA 83.1 3.7 0.00013 35.1 7.4 42 229-270 46-87 (90)
32 3w03_C DNA repair protein XRCC 82.1 2.2 7.6E-05 40.4 6.2 44 219-262 140-183 (184)
33 2yy0_A C-MYC-binding protein; 79.9 2.1 7.2E-05 33.2 4.3 31 233-263 21-51 (53)
34 2wt7_A Proto-oncogene protein 79.7 5.1 0.00017 31.3 6.5 34 237-270 22-55 (63)
35 3w03_C DNA repair protein XRCC 79.0 3.8 0.00013 38.8 6.6 39 231-269 145-183 (184)
36 1hjb_A Ccaat/enhancer binding 78.7 6.5 0.00022 33.3 7.3 31 239-269 37-67 (87)
37 2dgc_A Protein (GCN4); basic d 78.4 4.6 0.00016 31.9 6.0 31 240-270 32-62 (63)
38 3oja_B Anopheles plasmodium-re 78.3 13 0.00043 37.8 10.6 24 245-268 544-567 (597)
39 3hnw_A Uncharacterized protein 77.2 7.5 0.00026 34.8 7.7 36 198-234 35-72 (138)
40 1gu4_A CAAT/enhancer binding p 76.6 4.7 0.00016 33.4 5.7 56 185-269 19-74 (78)
41 1t2k_D Cyclic-AMP-dependent tr 76.2 7.6 0.00026 30.0 6.5 34 237-270 21-54 (61)
42 3nmd_A CGMP dependent protein 75.4 6.1 0.00021 32.8 6.0 30 241-270 36-65 (72)
43 3m9b_A Proteasome-associated A 74.0 3.8 0.00013 40.5 5.3 35 231-265 61-95 (251)
44 3mq7_A Bone marrow stromal ant 73.7 6.4 0.00022 35.5 6.2 32 232-263 79-110 (121)
45 1jnm_A Proto-oncogene C-JUN; B 72.7 13 0.00044 28.8 7.0 39 232-270 16-54 (62)
46 3k29_A Putative uncharacterize 72.4 11 0.00039 35.5 7.8 69 196-270 49-117 (169)
47 2dgc_A Protein (GCN4); basic d 72.1 6 0.0002 31.3 5.1 35 228-262 27-61 (63)
48 2zqm_A Prefoldin beta subunit 71.8 10 0.00034 31.3 6.7 71 199-270 38-109 (117)
49 3s9g_A Protein hexim1; cyclin 70.0 15 0.00052 32.4 7.6 30 219-252 29-58 (104)
50 1dh3_A Transcription factor CR 69.8 5 0.00017 31.0 4.1 32 231-269 22-53 (55)
51 2oqq_A Transcription factor HY 69.4 15 0.0005 28.0 6.4 35 232-266 4-38 (42)
52 3oja_B Anopheles plasmodium-re 69.0 12 0.00041 38.0 7.8 16 197-212 483-498 (597)
53 1yke_B RNA polymerase II holoe 68.7 9.3 0.00032 34.8 6.3 62 203-272 72-133 (151)
54 1dh3_A Transcription factor CR 68.5 3.4 0.00012 31.9 2.9 26 245-270 22-47 (55)
55 3s4r_A Vimentin; alpha-helix, 67.9 10 0.00036 31.8 6.0 38 231-268 56-93 (93)
56 2xdj_A Uncharacterized protein 67.5 16 0.00056 30.5 7.0 41 233-273 22-62 (83)
57 1fxk_A Prefoldin; archaeal pro 67.5 15 0.0005 30.0 6.7 71 199-270 33-104 (107)
58 1ykh_B RNA polymerase II holoe 67.0 11 0.00038 33.4 6.3 59 203-269 72-130 (132)
59 3q8t_A Beclin-1; autophagy, AT 67.0 13 0.00043 31.5 6.3 39 231-269 11-49 (96)
60 4emc_A Monopolin complex subun 66.9 8.3 0.00029 36.9 5.8 43 226-268 15-57 (190)
61 2v4h_A NF-kappa-B essential mo 66.6 15 0.00052 32.6 7.0 45 226-270 57-108 (110)
62 1go4_E MAD1 (mitotic arrest de 66.5 11 0.00037 32.9 5.9 32 239-270 13-44 (100)
63 1t3u_A Conserved hypothetical 66.4 42 0.0014 27.7 9.4 62 198-264 33-94 (104)
64 2zvf_A Alanyl-tRNA synthetase; 66.2 10 0.00034 33.2 5.8 20 233-252 34-53 (171)
65 3kin_B Kinesin heavy chain; mo 65.9 8.3 0.00028 33.4 5.2 28 245-273 89-116 (117)
66 3hnw_A Uncharacterized protein 65.9 18 0.00063 32.3 7.5 35 235-269 100-134 (138)
67 1nkp_B MAX protein, MYC proto- 65.7 8.8 0.0003 30.9 5.0 31 240-270 49-79 (83)
68 2wuj_A Septum site-determining 64.5 5.1 0.00018 31.0 3.2 26 243-268 32-57 (57)
69 2oqq_A Transcription factor HY 63.9 13 0.00045 28.3 5.2 30 233-262 12-41 (42)
70 3ra3_B P2F; coiled coil domain 63.4 5.4 0.00019 27.8 2.8 23 233-255 2-24 (28)
71 1uii_A Geminin; human, DNA rep 63.0 21 0.00073 30.4 6.9 36 228-263 43-78 (83)
72 1nlw_A MAD protein, MAX dimeri 62.9 21 0.00072 29.2 6.8 40 231-270 40-79 (80)
73 3m9b_A Proteasome-associated A 62.4 7.6 0.00026 38.4 4.8 39 232-270 55-93 (251)
74 3mq9_A Bone marrow stromal ant 61.9 8.6 0.00029 38.3 5.1 69 196-270 398-468 (471)
75 1gmj_A ATPase inhibitor; coile 61.5 25 0.00085 29.9 7.1 28 240-267 53-80 (84)
76 1j1e_C Troponin I, TNI; THIN f 61.4 53 0.0018 31.1 10.0 72 193-267 34-108 (180)
77 3he4_B Synzip5; heterodimeric 61.1 28 0.00097 26.4 6.6 31 227-257 6-36 (46)
78 2v71_A Nuclear distribution pr 60.5 18 0.0006 34.4 6.7 42 231-273 35-76 (189)
79 1kd8_B GABH BLL, GCN4 acid bas 60.0 23 0.00078 26.3 5.7 29 235-263 5-33 (36)
80 1fxk_C Protein (prefoldin); ar 59.1 29 0.00098 29.6 7.2 38 233-270 90-127 (133)
81 3m91_A Proteasome-associated A 58.4 33 0.0011 26.6 6.7 35 235-269 13-47 (51)
82 3he5_B Synzip2; heterodimeric 57.2 30 0.001 26.9 6.2 38 233-270 12-49 (52)
83 1wt6_A Myotonin-protein kinase 56.4 26 0.00089 29.7 6.3 39 228-266 35-73 (81)
84 2zdi_C Prefoldin subunit alpha 56.1 22 0.00075 31.2 6.2 45 226-270 96-144 (151)
85 3rrk_A V-type ATPase 116 kDa s 56.0 80 0.0027 30.5 10.6 71 197-276 69-143 (357)
86 2akf_A Coronin-1A; coiled coil 56.0 21 0.00071 25.7 4.8 27 242-268 3-29 (32)
87 3s4r_A Vimentin; alpha-helix, 55.9 41 0.0014 28.2 7.5 19 233-251 25-43 (93)
88 2wvr_A Geminin; DNA replicatio 55.7 25 0.00086 34.2 6.9 42 225-266 109-150 (209)
89 1ik9_A DNA repair protein XRCC 55.6 33 0.0011 32.6 7.7 43 224-266 125-167 (213)
90 3ra3_A P1C; coiled coil domain 55.4 5.5 0.00019 27.7 1.7 19 250-268 5-23 (28)
91 4h22_A Leucine-rich repeat fli 55.2 38 0.0013 29.8 7.3 35 236-270 49-83 (103)
92 3u1c_A Tropomyosin alpha-1 cha 55.1 37 0.0013 28.6 7.2 41 229-269 21-61 (101)
93 3m91_A Proteasome-associated A 54.7 35 0.0012 26.5 6.3 36 230-265 15-50 (51)
94 3cve_A Homer protein homolog 1 54.7 43 0.0015 27.7 7.2 42 229-270 5-46 (72)
95 1ic2_A Tropomyosin alpha chain 54.6 49 0.0017 26.7 7.5 36 233-268 22-57 (81)
96 1m1j_C Fibrinogen gamma chain; 54.5 15 0.00052 38.1 5.6 38 233-270 93-130 (409)
97 1l8d_A DNA double-strand break 54.5 32 0.0011 28.3 6.6 39 231-269 64-102 (112)
98 2jee_A YIIU; FTSZ, septum, coi 54.3 36 0.0012 28.7 6.8 12 233-244 29-40 (81)
99 1j1d_C Troponin I, TNI; THIN f 54.0 87 0.003 28.3 9.8 73 193-268 34-109 (133)
100 3nmd_A CGMP dependent protein 54.0 50 0.0017 27.4 7.5 39 227-265 29-67 (72)
101 2wt7_B Transcription factor MA 53.8 39 0.0013 28.9 7.0 30 241-270 51-80 (90)
102 4etp_A Kinesin-like protein KA 53.6 16 0.00055 37.3 5.5 32 232-263 11-42 (403)
103 1fxk_C Protein (prefoldin); ar 53.5 29 0.00098 29.6 6.3 42 226-267 86-131 (133)
104 3muj_A Transcription factor CO 53.4 16 0.00055 33.5 5.0 39 198-236 94-133 (138)
105 2zxx_A Geminin; coiled-coil, c 53.1 29 0.00099 29.2 6.0 42 226-267 29-70 (79)
106 1gd2_E Transcription factor PA 52.8 12 0.00042 30.4 3.7 31 235-265 40-70 (70)
107 2ve7_C Kinetochore protein NUF 52.6 7.8 0.00027 37.4 2.9 48 223-270 123-180 (250)
108 3q0x_A Centriole protein; cent 52.0 45 0.0015 32.4 8.1 51 220-270 160-210 (228)
109 1a93_A Coiled coil, LZ, MYC pr 51.2 24 0.00083 25.7 4.6 28 243-270 5-32 (34)
110 3mud_A DNA repair protein XRCC 50.6 45 0.0015 31.6 7.6 43 226-268 130-172 (175)
111 3a7p_A Autophagy protein 16; c 50.1 53 0.0018 30.5 7.9 23 191-213 30-53 (152)
112 3ra3_A P1C; coiled coil domain 49.9 16 0.00056 25.4 3.4 24 243-266 5-28 (28)
113 3oja_A Leucine-rich immune mol 49.7 2.1E+02 0.0071 28.5 12.8 20 248-267 445-464 (487)
114 3m48_A General control protein 49.6 24 0.00081 25.7 4.3 28 242-269 4-31 (33)
115 3u59_A Tropomyosin beta chain; 49.5 53 0.0018 27.5 7.2 40 229-268 21-60 (101)
116 2wuj_A Septum site-determining 49.4 16 0.00055 28.2 3.7 31 231-261 27-57 (57)
117 1ytz_T Troponin T; muscle, THI 49.3 43 0.0015 29.2 6.8 34 231-264 56-89 (107)
118 3efg_A Protein SLYX homolog; x 48.7 18 0.00061 29.8 4.1 33 233-265 30-62 (78)
119 1lrz_A FEMA, factor essential 48.4 32 0.0011 34.3 6.7 21 231-251 247-267 (426)
120 3cvf_A Homer-3, homer protein 48.4 37 0.0013 28.4 6.0 41 230-270 12-52 (79)
121 4h22_A Leucine-rich repeat fli 48.2 63 0.0021 28.4 7.6 42 229-270 27-69 (103)
122 2ve7_A Kinetochore protein HEC 48.2 12 0.00041 37.0 3.6 28 232-259 186-213 (315)
123 1lwu_C Fibrinogen gamma chain; 48.2 40 0.0014 34.0 7.4 35 234-268 15-49 (323)
124 1kd8_A GABH AIV, GCN4 acid bas 47.8 44 0.0015 24.8 5.5 26 243-268 6-31 (36)
125 3gpv_A Transcriptional regulat 47.0 25 0.00087 30.8 5.1 39 232-270 96-134 (148)
126 3ljc_A ATP-dependent protease 46.7 57 0.0019 30.4 7.7 28 242-270 223-250 (252)
127 1l8d_A DNA double-strand break 46.4 50 0.0017 27.2 6.5 38 233-270 5-42 (112)
128 4dzn_A Coiled-coil peptide CC- 46.2 38 0.0013 24.4 4.8 22 245-266 9-30 (33)
129 3gpv_A Transcriptional regulat 45.8 56 0.0019 28.6 7.1 35 238-273 95-129 (148)
130 1wlq_A Geminin; coiled-coil; 2 45.6 50 0.0017 28.1 6.4 33 226-258 33-65 (83)
131 2eqb_B RAB guanine nucleotide 45.4 70 0.0024 27.8 7.4 26 226-251 7-32 (97)
132 3oja_A Leucine-rich immune mol 45.1 54 0.0018 32.7 7.7 34 236-269 426-459 (487)
133 1go4_E MAD1 (mitotic arrest de 44.3 39 0.0013 29.4 5.7 34 231-264 12-45 (100)
134 3i00_A HIP-I, huntingtin-inter 44.1 82 0.0028 27.8 7.8 46 224-269 33-78 (120)
135 2wg5_A General control protein 44.0 24 0.00082 30.1 4.3 24 247-270 9-32 (109)
136 1ytz_I Troponin I; muscle, THI 43.7 57 0.002 31.0 7.2 70 193-266 32-104 (182)
137 1kd8_B GABH BLL, GCN4 acid bas 43.6 36 0.0012 25.2 4.5 30 241-270 4-33 (36)
138 3u06_A Protein claret segregat 43.6 34 0.0012 35.1 6.1 27 235-261 14-40 (412)
139 1r8i_A TRAC; VIRB5, helical bu 43.5 43 0.0015 31.1 6.3 37 248-284 18-54 (213)
140 1r8e_A Multidrug-efflux transp 43.1 45 0.0015 30.6 6.3 38 231-268 79-116 (278)
141 2w6a_A ARF GTPase-activating p 43.1 81 0.0028 25.7 6.9 34 232-265 28-61 (63)
142 3gp4_A Transcriptional regulat 43.0 47 0.0016 29.0 6.1 36 233-268 83-118 (142)
143 2k48_A Nucleoprotein; viral pr 42.7 53 0.0018 29.1 6.3 38 233-270 55-100 (107)
144 2zvf_A Alanyl-tRNA synthetase; 42.3 47 0.0016 28.9 6.1 30 236-265 30-59 (171)
145 3rvy_A ION transport protein; 42.3 6.4 0.00022 36.7 0.6 25 246-270 257-281 (285)
146 1kd8_A GABH AIV, GCN4 acid bas 42.2 47 0.0016 24.6 4.9 32 234-265 4-35 (36)
147 3tnu_B Keratin, type II cytosk 42.2 51 0.0018 28.5 6.2 22 202-223 15-36 (129)
148 3pjs_K KCSA, voltage-gated pot 42.2 47 0.0016 29.3 6.1 26 245-270 138-163 (166)
149 1j1d_B Troponin T, TNT; THIN f 42.1 78 0.0027 27.6 7.3 70 189-264 18-89 (106)
150 2j5u_A MREC protein; bacterial 41.8 11 0.00038 36.1 2.2 36 233-268 21-59 (255)
151 2oxj_A Hybrid alpha/beta pepti 41.6 41 0.0014 24.7 4.5 28 242-269 5-32 (34)
152 3ol1_A Vimentin; structural ge 40.8 63 0.0022 27.9 6.5 36 232-267 21-56 (119)
153 3mq7_A Bone marrow stromal ant 40.7 1E+02 0.0036 27.8 8.0 27 241-267 74-100 (121)
154 2xdj_A Uncharacterized protein 40.7 65 0.0022 26.9 6.3 38 233-270 29-66 (83)
155 1joc_A EEA1, early endosomal a 40.6 66 0.0023 27.9 6.7 27 238-264 11-37 (125)
156 3gp4_A Transcriptional regulat 40.4 72 0.0025 27.8 6.9 40 230-269 87-126 (142)
157 2gkw_A TNF receptor-associated 39.5 46 0.0016 29.9 5.7 34 233-266 2-35 (192)
158 3q4f_C DNA repair protein XRCC 39.5 41 0.0014 32.2 5.5 30 225-254 155-184 (186)
159 1fmh_A General control protein 39.4 48 0.0016 23.8 4.5 26 242-267 5-30 (33)
160 3tnu_A Keratin, type I cytoske 39.0 45 0.0015 29.0 5.3 12 203-214 18-29 (131)
161 4emc_A Monopolin complex subun 38.9 65 0.0022 30.9 6.8 50 228-277 24-73 (190)
162 2oxj_A Hybrid alpha/beta pepti 38.4 62 0.0021 23.8 5.0 28 234-261 4-31 (34)
163 4etp_A Kinesin-like protein KA 37.9 46 0.0016 33.9 6.0 32 236-267 8-39 (403)
164 4b4t_K 26S protease regulatory 37.7 50 0.0017 34.0 6.3 37 233-269 51-87 (428)
165 3c3g_A Alpha/beta peptide with 37.7 56 0.0019 23.8 4.7 28 242-269 4-31 (33)
166 3a2a_A Voltage-gated hydrogen 37.6 76 0.0026 25.5 5.9 44 227-270 7-50 (58)
167 3ghg_A Fibrinogen alpha chain; 37.6 1.4E+02 0.0048 32.6 9.8 31 274-305 187-219 (562)
168 3jsv_C NF-kappa-B essential mo 37.5 40 0.0014 29.2 4.7 45 226-270 35-86 (94)
169 2wg5_A General control protein 37.4 35 0.0012 29.1 4.3 28 240-267 9-36 (109)
170 3nr7_A DNA-binding protein H-N 37.2 89 0.003 26.2 6.7 35 244-280 44-78 (86)
171 3twe_A Alpha4H; unknown functi 37.0 39 0.0013 23.4 3.6 20 249-268 5-24 (27)
172 1g6u_A Domain swapped dimer; d 36.9 1E+02 0.0036 23.5 6.3 26 245-270 20-45 (48)
173 1nkp_A C-MYC, MYC proto-oncoge 36.8 48 0.0016 27.4 4.9 64 203-270 17-84 (88)
174 2pnv_A Small conductance calci 36.8 54 0.0019 24.7 4.7 33 230-269 8-40 (43)
175 2xzr_A Immunoglobulin-binding 36.3 1.2E+02 0.0041 26.9 7.5 47 224-270 55-101 (114)
176 1rtm_1 Mannose-binding protein 36.3 48 0.0016 27.6 5.0 31 245-275 4-35 (149)
177 1deq_A Fibrinogen (alpha chain 36.2 84 0.0029 33.0 7.6 38 173-214 42-79 (390)
178 2l5g_B Putative uncharacterize 36.1 55 0.0019 24.9 4.6 24 244-267 15-38 (42)
179 1uo4_A General control protein 36.0 56 0.0019 24.0 4.5 28 242-269 5-32 (34)
180 2ic6_A Nucleocapsid protein; h 35.9 87 0.003 26.4 6.3 38 233-270 25-70 (78)
181 1uii_A Geminin; human, DNA rep 35.8 1.1E+02 0.0038 26.0 7.0 39 230-268 27-69 (83)
182 3ibp_A Chromosome partition pr 35.7 36 0.0012 34.6 4.8 71 194-266 23-104 (302)
183 1zme_C Proline utilization tra 34.7 42 0.0014 25.1 4.0 20 231-250 44-63 (70)
184 1vcs_A Vesicle transport throu 34.4 1.3E+02 0.0043 25.3 7.2 49 221-269 35-91 (102)
185 1deb_A APC protein, adenomatou 34.4 64 0.0022 25.6 4.9 26 244-269 9-34 (54)
186 1fzc_C Fibrin; blood coagulati 34.3 17 0.0006 36.6 2.3 33 234-266 7-39 (319)
187 1lwu_C Fibrinogen gamma chain; 33.7 94 0.0032 31.4 7.4 38 233-270 21-58 (323)
188 1wlq_A Geminin; coiled-coil; 2 33.5 1.1E+02 0.0036 26.2 6.5 26 240-265 40-65 (83)
189 1q08_A Zn(II)-responsive regul 33.1 52 0.0018 26.1 4.5 26 245-270 46-71 (99)
190 1joc_A EEA1, early endosomal a 33.0 54 0.0018 28.5 4.9 23 241-263 21-43 (125)
191 1am9_A Srebp-1A, protein (ster 32.8 53 0.0018 26.6 4.5 23 247-269 52-74 (82)
192 2l5g_B Putative uncharacterize 32.3 1.2E+02 0.004 23.1 5.9 28 242-269 6-33 (42)
193 2zdi_C Prefoldin subunit alpha 32.1 78 0.0027 27.7 5.8 42 229-270 96-137 (151)
194 1x8y_A Lamin A/C; structural p 31.6 1.1E+02 0.0036 25.2 6.2 28 242-269 25-52 (86)
195 4dzn_A Coiled-coil peptide CC- 31.6 82 0.0028 22.6 4.7 23 246-268 3-25 (33)
196 1ik9_A DNA repair protein XRCC 31.5 1E+02 0.0034 29.3 6.8 10 259-268 189-198 (213)
197 3onj_A T-snare VTI1; helix, HA 31.4 1.5E+02 0.0052 24.6 7.2 49 221-269 31-90 (97)
198 1zme_C Proline utilization tra 31.4 45 0.0015 24.9 3.6 23 247-269 46-68 (70)
199 4fi5_A Nucleoprotein; structur 31.4 1E+02 0.0034 27.6 6.3 38 233-270 42-87 (113)
200 3c3g_A Alpha/beta peptide with 31.3 95 0.0032 22.7 5.0 28 234-261 3-30 (33)
201 3c3f_A Alpha/beta peptide with 31.3 67 0.0023 23.5 4.3 26 243-268 6-31 (34)
202 4b4t_J 26S protease regulatory 30.9 76 0.0026 32.7 6.3 38 233-270 27-64 (405)
203 3viq_B Mating-type switching p 30.8 35 0.0012 29.0 3.2 27 242-268 5-31 (85)
204 3kqg_A Langerin, C-type lectin 30.5 70 0.0024 27.4 5.2 6 269-274 50-55 (182)
205 3htk_A Structural maintenance 30.4 1.5E+02 0.005 22.2 6.3 37 233-269 7-43 (60)
206 3qh9_A Liprin-beta-2; coiled-c 30.4 1.4E+02 0.0048 25.4 6.7 39 232-270 27-65 (81)
207 3mov_A Lamin-B1; LMNB1, B-type 30.1 1.1E+02 0.0038 25.8 6.2 35 236-270 28-62 (95)
208 1t6f_A Geminin; coiled-coil, c 30.1 91 0.0031 23.2 4.8 23 235-257 11-33 (37)
209 2ic9_A Nucleocapsid protein; h 29.7 1.2E+02 0.004 26.5 6.3 38 233-270 25-70 (96)
210 3m48_A General control protein 29.5 78 0.0027 23.1 4.3 25 235-259 4-28 (33)
211 3mud_A DNA repair protein XRCC 29.5 1.2E+02 0.0041 28.7 6.9 51 220-273 120-170 (175)
212 1gk4_A Vimentin; intermediate 29.5 1.2E+02 0.0042 24.6 6.2 30 240-269 21-50 (84)
213 3c3f_A Alpha/beta peptide with 29.4 1.1E+02 0.0036 22.5 5.0 28 234-261 4-31 (34)
214 2ve7_A Kinetochore protein HEC 29.3 36 0.0012 33.6 3.6 19 246-264 186-204 (315)
215 3lay_A Zinc resistance-associa 29.2 1.7E+02 0.0059 27.1 7.8 15 249-263 117-131 (175)
216 2p22_A Suppressor protein STP2 29.1 1.8E+02 0.0062 27.2 8.0 75 188-266 9-84 (174)
217 3he5_A Synzip1; heterodimeric 29.1 1.9E+02 0.0065 22.2 6.6 38 232-269 4-41 (49)
218 3ra3_B P2F; coiled coil domain 28.8 43 0.0015 23.3 2.8 23 247-269 2-24 (28)
219 4b4t_K 26S protease regulatory 28.8 88 0.003 32.2 6.4 33 233-265 58-90 (428)
220 2lw1_A ABC transporter ATP-bin 28.5 74 0.0025 26.0 4.7 13 256-268 60-72 (89)
221 3cvf_A Homer-3, homer protein 28.5 38 0.0013 28.4 3.0 29 235-263 24-52 (79)
222 2hy6_A General control protein 28.4 1.1E+02 0.0037 22.5 4.9 27 242-268 5-31 (34)
223 2wq1_A General control protein 28.4 1.1E+02 0.0039 22.2 5.0 26 243-268 5-30 (33)
224 3iv1_A Tumor susceptibility ge 28.3 65 0.0022 27.0 4.4 20 191-210 7-26 (78)
225 2z5i_A TM, general control pro 28.3 1.7E+02 0.0059 22.4 6.4 37 235-271 9-45 (52)
226 2zqm_A Prefoldin beta subunit 28.3 1.8E+02 0.0063 23.6 7.1 73 193-265 35-111 (117)
227 3na7_A HP0958; flagellar bioge 28.1 1.6E+02 0.0054 27.8 7.5 35 233-267 106-140 (256)
228 3i00_A HIP-I, huntingtin-inter 28.0 1.2E+02 0.0042 26.7 6.3 38 233-270 17-58 (120)
229 3u1c_A Tropomyosin alpha-1 cha 27.9 1.3E+02 0.0046 25.2 6.3 34 234-267 33-66 (101)
230 1m1j_B Fibrinogen beta chain; 27.8 3E+02 0.01 29.2 10.2 25 246-270 169-193 (464)
231 2wq1_A General control protein 27.7 1.1E+02 0.0038 22.3 4.8 27 234-260 3-29 (33)
232 1ic2_A Tropomyosin alpha chain 27.6 2.4E+02 0.0082 22.6 7.5 26 243-268 39-64 (81)
233 3kin_B Kinesin heavy chain; mo 27.5 86 0.0029 27.1 5.2 23 243-265 94-116 (117)
234 2bni_A General control protein 27.5 67 0.0023 23.6 3.7 27 242-268 5-31 (34)
235 3a5t_A Transcription factor MA 27.4 1 3.5E-05 39.5 -6.9 34 232-265 59-92 (107)
236 1got_B GT-beta; complex (GTP-b 26.9 39 0.0013 30.7 3.0 25 245-269 2-26 (340)
237 3mtu_E Head morphogenesis prot 26.9 1.9E+02 0.0064 24.4 6.8 41 231-271 30-70 (77)
238 1wle_A Seryl-tRNA synthetase; 26.8 1E+02 0.0035 32.6 6.6 34 242-275 120-153 (501)
239 3u06_A Protein claret segregat 26.7 1E+02 0.0035 31.7 6.4 32 236-267 8-39 (412)
240 2dq0_A Seryl-tRNA synthetase; 26.6 85 0.0029 32.5 5.9 32 242-273 73-104 (455)
241 3sjb_C Golgi to ER traffic pro 26.3 1.3E+02 0.0043 26.1 5.9 23 248-270 52-74 (93)
242 2oa5_A Hypothetical protein BQ 26.3 33 0.0011 30.5 2.3 22 241-262 11-32 (110)
243 1gmj_A ATPase inhibitor; coile 26.3 1.4E+02 0.0047 25.5 6.0 25 244-268 50-74 (84)
244 2hy6_A General control protein 26.2 1.2E+02 0.0041 22.2 4.8 28 234-261 4-31 (34)
245 3aon_A V-type sodium ATPase su 25.9 1.9E+02 0.0063 27.2 7.5 43 227-269 27-69 (217)
246 2lw1_A ABC transporter ATP-bin 25.7 94 0.0032 25.3 4.8 24 246-269 23-46 (89)
247 3qne_A Seryl-tRNA synthetase, 25.7 1E+02 0.0036 32.6 6.4 35 241-275 74-108 (485)
248 3rrk_A V-type ATPase 116 kDa s 25.4 1.3E+02 0.0045 29.0 6.6 68 193-267 61-128 (357)
249 2aze_A Transcription factor DP 25.4 1.3E+02 0.0045 28.0 6.2 40 230-269 4-43 (155)
250 3pbf_A Pulmonary surfactant-as 25.3 46 0.0016 27.4 3.0 23 247-269 4-26 (148)
251 3twe_A Alpha4H; unknown functi 25.3 89 0.003 21.6 3.8 21 242-262 5-25 (27)
252 1lwu_B Fibrinogen beta chain; 25.3 58 0.002 32.8 4.2 26 245-270 28-53 (323)
253 3azd_A Short alpha-tropomyosin 25.2 20 0.00067 26.0 0.6 30 232-268 5-34 (37)
254 3sja_C Golgi to ER traffic pro 25.2 2.1E+02 0.0071 23.3 6.6 23 248-270 35-57 (65)
255 3kqg_A Langerin, C-type lectin 25.2 65 0.0022 27.6 4.0 25 246-270 17-41 (182)
256 2wvr_A Geminin; DNA replicatio 25.2 1.4E+02 0.0046 29.2 6.5 31 238-268 115-145 (209)
257 1jcd_A Major outer membrane li 25.0 1.5E+02 0.0053 23.0 5.6 38 233-270 6-43 (52)
258 1buu_A Protein (mannose-bindin 24.9 70 0.0024 27.5 4.1 30 245-274 23-53 (168)
259 4e61_A Protein BIM1; EB1-like 24.4 1.5E+02 0.005 26.2 6.0 38 226-263 13-50 (106)
260 3hhm_B NISH2 P85alpha; PI3KCA, 24.4 1.2E+02 0.0041 30.9 6.3 38 233-270 214-251 (373)
261 2r2v_A GCN4 leucine zipper; co 23.9 1.4E+02 0.0048 21.9 4.8 27 242-268 5-31 (34)
262 1q08_A Zn(II)-responsive regul 23.8 2.3E+02 0.008 22.3 6.8 34 232-265 40-73 (99)
263 1dip_A Delta-sleep-inducing pe 23.7 83 0.0028 26.6 4.1 22 236-257 20-41 (78)
264 3eq2_A Probable two-component 23.5 2.2E+02 0.0075 27.2 7.7 47 222-268 110-156 (394)
265 1zxa_A CGMP-dependent protein 23.5 1.2E+02 0.0039 24.9 4.9 24 247-270 27-50 (67)
266 3efg_A Protein SLYX homolog; x 23.4 1.9E+02 0.0064 23.7 6.2 29 240-268 30-58 (78)
267 3na7_A HP0958; flagellar bioge 23.2 1.6E+02 0.0055 27.7 6.6 41 230-270 45-85 (256)
268 3ghg_C Fibrinogen gamma chain; 22.9 4.2E+02 0.014 27.8 10.1 73 197-270 54-130 (411)
269 2fxo_A Myosin heavy chain, car 22.8 1.7E+02 0.0058 25.3 6.2 27 243-269 95-121 (129)
270 3lss_A Seryl-tRNA synthetase; 22.7 1.3E+02 0.0044 31.9 6.4 37 230-266 36-72 (484)
271 2pnv_A Small conductance calci 22.7 1.3E+02 0.0045 22.6 4.7 24 247-270 11-34 (43)
272 3o0z_A RHO-associated protein 22.7 1.6E+02 0.0055 27.7 6.3 31 238-268 48-78 (168)
273 2aze_B Transcription factor E2 22.5 1.4E+02 0.0048 25.6 5.5 43 233-275 8-51 (106)
274 2v71_A Nuclear distribution pr 22.5 1.6E+02 0.0054 28.0 6.3 29 234-262 52-80 (189)
275 3vmx_A Voltage-gated hydrogen 22.5 2.8E+02 0.0095 21.6 7.0 38 233-270 6-43 (48)
276 1fzc_C Fibrin; blood coagulati 22.3 68 0.0023 32.4 4.0 38 233-270 13-50 (319)
277 1d7m_A Cortexillin I; coiled-c 22.2 2.6E+02 0.009 24.4 7.1 56 221-276 4-63 (101)
278 3plt_A Sphingolipid long chain 22.2 1.7E+02 0.006 28.6 6.7 28 186-213 102-129 (234)
279 4gkw_A Spindle assembly abnorm 22.2 3.1E+02 0.011 25.5 8.0 44 225-268 40-83 (167)
280 1aq5_A Matrilin-1, CMP, cartil 22.2 1.5E+02 0.0051 22.9 5.0 26 243-268 21-46 (47)
281 3lay_A Zinc resistance-associa 22.1 77 0.0026 29.4 4.1 57 214-270 68-131 (175)
282 1uuj_A Platelet-activating fac 21.9 31 0.0011 29.4 1.3 24 247-270 60-83 (88)
283 1r8e_A Multidrug-efflux transp 21.8 1.4E+02 0.0048 27.2 5.8 29 241-269 82-110 (278)
284 2p2u_A HOST-nuclease inhibitor 21.7 2.7E+02 0.0092 25.3 7.5 47 226-273 18-72 (171)
285 1i84_S Smooth muscle myosin he 21.7 3.9E+02 0.013 30.5 10.4 24 247-270 915-938 (1184)
286 3a7p_A Autophagy protein 16; c 21.7 2.7E+02 0.0093 25.9 7.5 28 246-273 104-134 (152)
287 2cpt_A SKD1 protein, vacuolar 21.6 79 0.0027 27.3 3.8 26 245-270 60-85 (117)
288 2r2v_A GCN4 leucine zipper; co 21.6 1.8E+02 0.0062 21.3 5.0 28 234-261 4-31 (34)
289 3s9g_A Protein hexim1; cyclin 21.5 3.2E+02 0.011 24.1 7.5 24 238-261 65-88 (104)
290 3q4f_C DNA repair protein XRCC 21.3 1.2E+02 0.004 29.1 5.2 35 223-260 149-183 (186)
291 2qdq_A Talin-1; dimerisation d 21.3 1.8E+02 0.0063 22.8 5.3 27 241-267 11-37 (50)
292 1grj_A GREA protein; transcrip 21.2 2.7E+02 0.0094 24.7 7.4 29 250-279 51-79 (158)
293 3onj_A T-snare VTI1; helix, HA 21.0 2.3E+02 0.0078 23.5 6.4 25 233-257 36-60 (97)
294 1fxk_A Prefoldin; archaeal pro 21.0 2.9E+02 0.0099 22.2 6.9 33 233-265 10-42 (107)
295 2oto_A M protein; helical coil 21.0 2.9E+02 0.0098 24.4 7.4 8 200-207 34-41 (155)
296 2q13_A DCC-interacting protein 20.9 2.5E+02 0.0085 27.4 7.6 23 187-209 162-184 (385)
297 2efl_A Formin-binding protein 20.9 2.9E+02 0.01 25.3 7.7 36 232-267 110-145 (305)
298 3eff_K Voltage-gated potassium 20.8 1.4E+02 0.0049 25.2 5.3 23 248-270 114-136 (139)
299 3p8c_D Wiskott-aldrich syndrom 20.8 3.6E+02 0.012 26.9 8.8 30 241-270 53-82 (279)
300 1hlo_A Protein (transcription 20.7 1.1E+02 0.0036 24.5 4.1 23 245-267 57-79 (80)
301 2bni_A General control protein 20.7 1.3E+02 0.0044 22.1 4.1 28 234-261 4-31 (34)
302 1g6u_A Domain swapped dimer; d 20.5 1.2E+02 0.004 23.3 4.1 27 239-265 21-47 (48)
303 3swk_A Vimentin; cytoskeleton, 20.5 1.7E+02 0.0058 24.2 5.4 31 235-265 4-34 (86)
304 3qne_A Seryl-tRNA synthetase, 20.5 2E+02 0.0068 30.5 7.3 38 233-270 73-110 (485)
305 3v86_A De novo design helix; c 20.5 1E+02 0.0035 21.3 3.4 24 242-265 4-27 (27)
306 3tnu_B Keratin, type II cytosk 20.5 2E+02 0.0069 24.7 6.2 24 244-267 74-97 (129)
307 3hh0_A Transcriptional regulat 20.5 1.6E+02 0.0053 25.8 5.5 33 233-265 82-114 (146)
308 3l4q_C Phosphatidylinositol 3- 20.3 1.9E+02 0.0065 27.1 6.3 38 232-269 104-141 (170)
309 1gk7_A Vimentin; intermediate 20.2 1.3E+02 0.0043 22.1 4.1 29 233-261 8-36 (39)
310 1zxa_A CGMP-dependent protein 20.1 1.5E+02 0.0051 24.2 4.9 28 241-268 28-55 (67)
No 1
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.88 E-value=1.2e-22 Score=167.34 Aligned_cols=80 Identities=38% Similarity=0.559 Sum_probs=76.8
Q ss_pred chhhhhHHHHhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 185 IREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALL 264 (561)
Q Consensus 185 RRaTHNaLERKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeEL 264 (561)
+|.+||.+||+||++||+||+.|+++||.+.++.|+||+.||++|++||+.|+++++++++|+++|++|+++|+++|++|
T Consensus 1 ~R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 1 SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 48999999999999999999999999999989999999999999999999999999999999999999999999999865
No 2
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.85 E-value=2.1e-21 Score=161.94 Aligned_cols=82 Identities=29% Similarity=0.458 Sum_probs=79.6
Q ss_pred CchhhhhHHHHhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 184 GIREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLAL 263 (561)
Q Consensus 184 eRRaTHNaLERKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeE 263 (561)
++|.+||.+||+||++||+||+.|+++||.+.++.|.||+.||++|++||++|++++++++.++++|+++++.|+++|++
T Consensus 5 ~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 5 VKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HH
Q psy11481 264 LK 265 (561)
Q Consensus 264 LK 265 (561)
|+
T Consensus 85 L~ 86 (88)
T 1nkp_A 85 LG 86 (88)
T ss_dssp HC
T ss_pred hh
Confidence 86
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.79 E-value=2.3e-19 Score=146.19 Aligned_cols=81 Identities=35% Similarity=0.614 Sum_probs=76.2
Q ss_pred CchhhhhHHHHhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 184 GIREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLAL 263 (561)
Q Consensus 184 eRRaTHNaLERKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeE 263 (561)
++|..||..||+||+.||++|+.|+++||.+. +.|.||+.||.+|++||+.|+++.++++.|+++|++++++|+++|++
T Consensus 1 ~rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 1 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999864 57999999999999999999999999999999999999999999987
Q ss_pred HH
Q psy11481 264 LK 265 (561)
Q Consensus 264 LK 265 (561)
|+
T Consensus 80 L~ 81 (83)
T 1nkp_B 80 LG 81 (83)
T ss_dssp CS
T ss_pred hc
Confidence 64
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.67 E-value=9.2e-17 Score=130.58 Aligned_cols=71 Identities=37% Similarity=0.682 Sum_probs=65.5
Q ss_pred CCchhhhhHHHHhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 183 SGIREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEHEMERLAREK 254 (561)
Q Consensus 183 SeRRaTHNaLERKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQreEreLE~EkERLRREn 254 (561)
..+|..||..||+||..||++|+.|+.+||.+. +.|.||+.||.+|++||+.|+++.++++.++++|++|+
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 357999999999999999999999999999964 47899999999999999999999999999999998764
No 5
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.64 E-value=2.3e-16 Score=137.64 Aligned_cols=85 Identities=20% Similarity=0.373 Sum_probs=52.7
Q ss_pred CCchhhhhHHHHhHHHHHHHHHHHHhccCCCCCC-cCCcchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy11481 183 SGIREVHNKLEKNRRAHLKECFEILKRQVPPAQE-EKKSSNLSILHSAIRYIQFLRRREREFEHE---MERLAREKIHAQ 258 (561)
Q Consensus 183 SeRRaTHNaLERKRRd~LKdcFeeLRdlVPsLsD-n~KaSKAsILrKAiDYIQkLQreEreLE~E---kERLRREneaLQ 258 (561)
..+|..||.+||+||+.||++|.+|+++||.+.+ ..|.+|+.||.+|++||++|+++.++++++ .++|+.++..|.
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~L~ 104 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLL 104 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999754 468999999999999999999999999865 567999999999
Q ss_pred HHHHHHHHH
Q psy11481 259 QRLALLKKE 267 (561)
Q Consensus 259 QRLeELKqE 267 (561)
.|+.+|+..
T Consensus 105 ~riqeLE~~ 113 (118)
T 4ati_A 105 LRVQELEMQ 113 (118)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 999998854
No 6
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.63 E-value=7.6e-16 Score=126.49 Aligned_cols=71 Identities=28% Similarity=0.383 Sum_probs=62.4
Q ss_pred CchhhhhHHHHhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 184 GIREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIH 256 (561)
Q Consensus 184 eRRaTHNaLERKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQreEreLE~EkERLRREnea 256 (561)
.+|..||.+||+||+.||++|.+|+++||.. +.|.+|+.||.+|++||++|+++.++++.|.++|+.+.+.
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~--~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGT--EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999999999999983 4799999999999999999999988777777666655443
No 7
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.57 E-value=3.8e-16 Score=128.05 Aligned_cols=62 Identities=32% Similarity=0.431 Sum_probs=50.6
Q ss_pred CCchhhhhHHHHhHHHHHHHHHHHHhccCCCCCCcCCc-chHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 183 SGIREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKS-SNLSILHSAIRYIQFLRRREREFE 244 (561)
Q Consensus 183 SeRRaTHNaLERKRRd~LKdcFeeLRdlVPsLsDn~Ka-SKAsILrKAiDYIQkLQreEreLE 244 (561)
.++|.+||++||+||..||++|++|+++||.+.+..|. ||+.||++|++||+.|+++.++++
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999964455676 899999999999999999987654
No 8
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.48 E-value=4.6e-15 Score=116.09 Aligned_cols=58 Identities=31% Similarity=0.434 Sum_probs=52.8
Q ss_pred CCchhhhhHHHHhHHHHHHHHHHHHhccCCCCCCc---CCcchHHHHHHHHHHHHHHHHHH
Q psy11481 183 SGIREVHNKLEKNRRAHLKECFEILKRQVPPAQEE---KKSSNLSILHSAIRYIQFLRRRE 240 (561)
Q Consensus 183 SeRRaTHNaLERKRRd~LKdcFeeLRdlVPsLsDn---~KaSKAsILrKAiDYIQkLQreE 240 (561)
..+|..||.+||+||+.||++|.+|+++||.+... .|.+|+.||.+|++||++|++++
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999997643 47899999999999999999875
No 9
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.35 E-value=1.4e-12 Score=102.69 Aligned_cols=56 Identities=29% Similarity=0.312 Sum_probs=53.1
Q ss_pred CchhhhhHHHHhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHHH
Q psy11481 184 GIREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRR 239 (561)
Q Consensus 184 eRRaTHNaLERKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQre 239 (561)
++|..||+.||+|+..||++|+.||+.||.+..+.|.||+.||+.|++||..|++.
T Consensus 1 ~rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~ 56 (60)
T 2ql2_B 1 SRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEI 56 (60)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999988889999999999999999999875
No 10
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.34 E-value=2.1e-13 Score=108.00 Aligned_cols=55 Identities=27% Similarity=0.434 Sum_probs=50.1
Q ss_pred chhhhhHHHHhHHHHHHHHHHHHhccCCCCCC----cCCcchHHHHHHHHHHHHHHHHH
Q psy11481 185 IREVHNKLEKNRRAHLKECFEILKRQVPPAQE----EKKSSNLSILHSAIRYIQFLRRR 239 (561)
Q Consensus 185 RRaTHNaLERKRRd~LKdcFeeLRdlVPsLsD----n~KaSKAsILrKAiDYIQkLQre 239 (561)
+|..|+.+||+||+.||.+|.+|+.+||.+.. ..|.||+.||..|++||++|+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~ 60 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQN 60 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999997632 46899999999999999999875
No 11
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.34 E-value=7.9e-13 Score=106.64 Aligned_cols=56 Identities=30% Similarity=0.469 Sum_probs=52.1
Q ss_pred CCchhhhhHHHHhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHHH
Q psy11481 183 SGIREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRR 239 (561)
Q Consensus 183 SeRRaTHNaLERKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQre 239 (561)
..+|..||+.||+|+..||++|+.||+.||... +.|.||+.||+.|++||..|++.
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~~ 65 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQAL 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999865 68999999999999999999874
No 12
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.33 E-value=2.3e-12 Score=105.23 Aligned_cols=57 Identities=21% Similarity=0.301 Sum_probs=52.0
Q ss_pred CchhhhhHHHHhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHHHHHH
Q psy11481 184 GIREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRRERE 242 (561)
Q Consensus 184 eRRaTHNaLERKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQreEre 242 (561)
.+|..||.+||+||+.||++|.+|+.+||. ...|.+|++||.+|++||+.|+++..=
T Consensus 7 ~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~--~~~K~dK~sIL~~aI~yik~Lq~~~~~ 63 (71)
T 4h10_B 7 AKRVSRNKSEKKRRDQFNVLIKELGSMLPG--NARKMDKSTVLQKSIDFLRKHKEITAW 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--CCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHHhCCC--CCCCCcHHHHHHHHHHHHHHHHHhhhH
Confidence 479999999999999999999999999996 346999999999999999999987643
No 13
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.16 E-value=1.5e-11 Score=100.37 Aligned_cols=55 Identities=29% Similarity=0.507 Sum_probs=49.8
Q ss_pred CchhhhhHHHHhHHHHHHHHHHHHhccCCCCC-CcCCcchHHHHHHHHHHHHHHHH
Q psy11481 184 GIREVHNKLEKNRRAHLKECFEILKRQVPPAQ-EEKKSSNLSILHSAIRYIQFLRR 238 (561)
Q Consensus 184 eRRaTHNaLERKRRd~LKdcFeeLRdlVPsLs-Dn~KaSKAsILrKAiDYIQkLQr 238 (561)
.+|..||.+||+||+.||++|++|+.+||.+. ...|.+|+.||+.|++||+.|+.
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 47999999999999999999999999999753 34699999999999999999874
No 14
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=99.04 E-value=1.1e-09 Score=92.34 Aligned_cols=72 Identities=18% Similarity=0.312 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhccCCCCC-CcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q psy11481 196 RRAHLKECFEILKRQVPPAQ-EEKKSSNLSILHSAIRYIQFLRRREREFEHEME---RLAREKIHAQQRLALLKKE 267 (561)
Q Consensus 196 RRd~LKdcFeeLRdlVPsLs-Dn~KaSKAsILrKAiDYIQkLQreEreLE~EkE---RLRREneaLQQRLeELKqE 267 (561)
-|.+||++|.+|..+||... ...|.+|++||++|+|||++|+++..++.++.. +|+..+..|.-|+.||+-+
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 38999999999999999753 357899999999999999999999887776554 5666888888888888754
No 15
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.90 E-value=4.2e-10 Score=91.89 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=45.8
Q ss_pred hHHHHhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHH
Q psy11481 190 NKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRR 238 (561)
Q Consensus 190 NaLERKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQr 238 (561)
|+-||+|+..||++|+.||+.||.+..+.|.||+.||+.|++||..|++
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 5668899999999999999999999888999999999999999999984
No 16
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.67 E-value=1.9e-08 Score=97.70 Aligned_cols=53 Identities=23% Similarity=0.370 Sum_probs=41.8
Q ss_pred CchhhhhHHHHhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHH
Q psy11481 184 GIREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRR 238 (561)
Q Consensus 184 eRRaTHNaLERKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQr 238 (561)
.+|..||.+||+||+.||..|.+|+.+||. ...|..|+.||+.|++||+.|+.
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~--~~~~~dk~~il~~~~~~~~~~~~ 63 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPG--NARKMDKSTVLQKSIDFLRKHKE 63 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCS--SSCCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCC--CCCCcCHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999994 45799999999999999998865
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.47 E-value=7e-08 Score=95.10 Aligned_cols=54 Identities=30% Similarity=0.522 Sum_probs=49.0
Q ss_pred CchhhhhHHHHhHHHHHHHHHHHHhccCCCCC-CcCCcchHHHHHHHHHHHHHHH
Q psy11481 184 GIREVHNKLEKNRRAHLKECFEILKRQVPPAQ-EEKKSSNLSILHSAIRYIQFLR 237 (561)
Q Consensus 184 eRRaTHNaLERKRRd~LKdcFeeLRdlVPsLs-Dn~KaSKAsILrKAiDYIQkLQ 237 (561)
.+|..||.+||+||+.||..|.+|+.+||... ...|..|++||+.|++||+.|+
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~ 66 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 66 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHH
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhh
Confidence 57999999999999999999999999999643 3468999999999999999876
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.36 E-value=5.7e-07 Score=77.68 Aligned_cols=48 Identities=29% Similarity=0.440 Sum_probs=44.0
Q ss_pred HHhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHHHH
Q psy11481 193 EKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRRE 240 (561)
Q Consensus 193 ERKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQreE 240 (561)
||.|=..||++|+.||+.||....+.|.||+.+|+.|++||..|++-.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L 80 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIAL 80 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 467778899999999999999888899999999999999999998864
No 19
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=94.63 E-value=0.042 Score=42.66 Aligned_cols=43 Identities=14% Similarity=0.154 Sum_probs=24.7
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 228 SAIRYIQFLR-------RREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 228 KAiDYIQkLQ-------reEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
.|+|||++-- .+-..+..|++.|++++++|++++++|+.+|.+
T Consensus 2 ~AlefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 2 SALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3778887642 344567777888888888888888888887765
No 20
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=94.05 E-value=0.061 Score=39.22 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 234 QFLRRREREFEHEMERLAREKIHAQQRLALLK 265 (561)
Q Consensus 234 QkLQreEreLE~EkERLRREneaLQQRLeELK 265 (561)
..|+.+|+++..|+|.|+++++.|+++|+.|+
T Consensus 3 ~slq~dE~kLl~ekE~l~~r~eqL~~kLe~L~ 34 (34)
T 1a93_A 3 GGVQAEEQKLISEEDLLRKRREQLKHKLEQLX 34 (34)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999999998864
No 21
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=93.06 E-value=0.32 Score=37.68 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 228 SAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 228 KAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
+-.+|+..|+.+...++.+...|+.++..|+.++..|+..|.
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999999998887763
No 22
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=92.96 E-value=0.17 Score=41.41 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 230 IRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 230 iDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
-.||+.|+.+..+++.+.+.|..|++.|+.++..|+.||..
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999864
No 23
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=92.00 E-value=0.56 Score=36.80 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 227 HSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 227 rKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
.+-.+||..|+.+...++.+...|+.++..|+..+..|+..|..
T Consensus 19 ~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45668899999998888888888888888888888888877643
No 24
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.73 E-value=0.57 Score=39.56 Aligned_cols=47 Identities=21% Similarity=0.377 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhc
Q psy11481 226 LHSAIRYIQFLRRREREFEHEMERLAREKIH-------AQQRLALLKKELSARWE 273 (561)
Q Consensus 226 LrKAiDYIQkLQreEreLE~EkERLRREnea-------LQQRLeELKqELsQqw~ 273 (561)
++.|+|-|.-|+.+..++..+...|..++++ |.++.++|+.+... |.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~-wq 68 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG-WQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HH
Confidence 4568887777655555555555554444444 88888888888777 86
No 25
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=91.14 E-value=0.29 Score=38.12 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 228 SAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 228 KAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
+-.+||..|+.+...++.+.+.|+.++..|+.++..|++.|.
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888777777777777777777777777766553
No 26
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=87.58 E-value=1.5 Score=34.62 Aligned_cols=41 Identities=27% Similarity=0.345 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 229 AIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 229 AiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
|..|=+.=+.+..+++.+.+.|..++.+|+.+++.|+.|+.
T Consensus 14 A~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 14 ATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454555555566666666666666666666666666654
No 27
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=87.29 E-value=0.96 Score=38.28 Aligned_cols=20 Identities=25% Similarity=0.114 Sum_probs=10.2
Q ss_pred chhhhhHHHHhHHHHHHHHH
Q psy11481 185 IREVHNKLEKNRRAHLKECF 204 (561)
Q Consensus 185 RRaTHNaLERKRRd~LKdcF 204 (561)
+|.-.|++-|+-|+.=+..-
T Consensus 19 rR~rNN~AarrSR~krk~r~ 38 (87)
T 1hjb_A 19 RRERNNIAVRKSRDKAKMRN 38 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 35555555555555444433
No 28
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=86.92 E-value=0.36 Score=35.28 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALL 264 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeEL 264 (561)
++++++++...++++++|++++..|..++..|
T Consensus 2 ~~~mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 2 CGGMRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 35688999999999999999999999888665
No 29
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=85.02 E-value=1.6 Score=36.30 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 242 EFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 242 eLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
+++.+.+.|++|+..|+.++++|+.|+..
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555543
No 30
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=83.34 E-value=4.2 Score=32.02 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 229 AIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 229 AiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqEL 268 (561)
-.+++..|+.+.++++.+...|+.++..|+..+..|+.-|
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555443
No 31
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=83.15 E-value=3.7 Score=35.09 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 229 AIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 229 AiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
=++-+..|+.+...+..|+++|++|+..+++.++.+++.+..
T Consensus 46 r~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 46 RVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888888888888888888877653
No 32
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=82.08 E-value=2.2 Score=40.38 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=29.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 219 KSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLA 262 (561)
Q Consensus 219 KaSKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLe 262 (561)
......||.-+++-++.|+.++.++++|.++|++|-....+|++
T Consensus 140 ~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 140 AEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445577777777777777777777777777777666665554
No 33
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=79.95 E-value=2.1 Score=33.18 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLAL 263 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeE 263 (561)
+..|++++.+++.+++.|++++++|+++|++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4557777788888888888888888877764
No 34
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=79.65 E-value=5.1 Score=31.32 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 237 RRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 237 QreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
++...+++.+.+.|..++..|+.+++.|+.++.+
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777888888888888888888887765
No 35
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=78.99 E-value=3.8 Score=38.84 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 231 RYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 231 DYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
++|.++-++..++++++++|++|++.|++..+...+++.
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 488889999999999999999999999999998888775
No 36
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=78.74 E-value=6.5 Score=33.25 Aligned_cols=31 Identities=32% Similarity=0.449 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 239 REREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 239 eEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
++.+++.+.+.|++|+..|+.++++|+.|+.
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666666666666666654
No 37
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=78.38 E-value=4.6 Score=31.94 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 240 EREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 240 EreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
..+|+.++++|..++..|+.+++.|+.++.+
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLVGE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556667777777777777877776643
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.31 E-value=13 Score=37.81 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 245 HEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 245 ~EkERLRREneaLQQRLeELKqEL 268 (561)
.|+++++++.+.-++++.++++|+
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~ 567 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQET 567 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHH
Confidence 333344443333344444444443
No 39
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=77.16 E-value=7.5 Score=34.83 Aligned_cols=36 Identities=8% Similarity=0.168 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcc--CCCCCCcCCcchHHHHHHHHHHHH
Q psy11481 198 AHLKECFEILKRQ--VPPAQEEKKSSNLSILHSAIRYIQ 234 (561)
Q Consensus 198 d~LKdcFeeLRdl--VPsLsDn~KaSKAsILrKAiDYIQ 234 (561)
..+++.+.+++.. -|.+. ..+..-.+-|.=|=||.+
T Consensus 35 ~~vd~km~ei~~~~~~~~l~-~~r~aVLaALNiadEl~k 72 (138)
T 3hnw_A 35 SYINNKITEFNKEESYRRMS-AELRTDMMYLNIADDYFK 72 (138)
T ss_dssp HHHHHHHHHHTTCHHHHTSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHHHHHHH
Confidence 4678888999966 77753 233333333333444443
No 40
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=76.58 E-value=4.7 Score=33.43 Aligned_cols=56 Identities=21% Similarity=0.186 Sum_probs=31.5
Q ss_pred chhhhhHHHHhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 185 IREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALL 264 (561)
Q Consensus 185 RRaTHNaLERKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeEL 264 (561)
+|.=.|++-|+-|+.=+....++ +.+..+|+.|-.+|+.++..|++++..|
T Consensus 19 rR~rNN~AakrSR~krk~r~~e~-----------------------------~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 19 RRERNNIAVRKSRDKAKMRNLET-----------------------------QHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777776666655554444 3444444455555555555556666666
Q ss_pred HHHHh
Q psy11481 265 KKELS 269 (561)
Q Consensus 265 KqELs 269 (561)
+.-|.
T Consensus 70 r~ll~ 74 (78)
T 1gu4_A 70 RNLFK 74 (78)
T ss_dssp HTTTC
T ss_pred HHHHH
Confidence 65443
No 41
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=76.18 E-value=7.6 Score=29.95 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 237 RRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 237 QreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
++...+++.+.+.|..++..|+.+++.|+.++.+
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777778888888888888888888754
No 42
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=75.38 E-value=6.1 Score=32.82 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 241 REFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 241 reLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
+..+..++.|+++..+....+.+|+.+|.+
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566666666666666677777665
No 43
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=74.02 E-value=3.8 Score=40.51 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 231 RYIQFLRRREREFEHEMERLAREKIHAQQRLALLK 265 (561)
Q Consensus 231 DYIQkLQreEreLE~EkERLRREneaLQQRLeELK 265 (561)
..+..|..+++++.++++++++|++.|+.+|+.|+
T Consensus 61 ~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 61 ARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555555555555555555555555444
No 44
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=73.71 E-value=6.4 Score=35.48 Aligned_cols=32 Identities=31% Similarity=0.321 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 232 YIQFLRRREREFEHEMERLAREKIHAQQRLAL 263 (561)
Q Consensus 232 YIQkLQreEreLE~EkERLRREneaLQQRLeE 263 (561)
-|+.|.++.++..+|+|+|+++++.|+.|+..
T Consensus 79 EI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 79 EITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 45566666666666666666666666665543
No 45
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=72.67 E-value=13 Score=28.83 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 232 YIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 232 YIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
+=+.=++...+++.+.+.|..++..|+.+++.|+.++.+
T Consensus 16 ~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 16 SRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344556678888889999999999999999988765
No 46
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=72.39 E-value=11 Score=35.48 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 196 RRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 196 RRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
+-.|-++.+..||+.+-... -..|+- ..-.||+-|++++..++...++..+.++.-+++|+..++++.+
T Consensus 49 ~~~h~~~k~~qlre~~d~gt---t~~~i~---~m~~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~q 117 (169)
T 3k29_A 49 VKNHYMQKIRQLREQLDDGT---TSDAIL---KMKAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTK 117 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHCC---CHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC---CcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888765432 233322 3456999999999999988888888777777777777776643
No 47
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=72.15 E-value=6 Score=31.31 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 228 SAIRYIQFLRRREREFEHEMERLAREKIHAQQRLA 262 (561)
Q Consensus 228 KAiDYIQkLQreEreLE~EkERLRREneaLQQRLe 262 (561)
+-.+|+..|+.+-.+|+.+...|+.|+..|++.+.
T Consensus 27 RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578888888888888888888888888887765
No 48
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=71.77 E-value=10 Score=31.30 Aligned_cols=71 Identities=11% Similarity=0.178 Sum_probs=48.9
Q ss_pred HHHHHHHHHhccCCCCCCcC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 199 HLKECFEILKRQVPPAQEEK-KSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 199 ~LKdcFeeLRdlVPsLsDn~-KaSKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
++..-.++|..+=+. .... ..-.+-|.+.--+.+..|+++...++.+++.|.++...++.++++++.+|-+
T Consensus 38 e~~~~~~eL~~l~~d-~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 38 EAKKALDEIESLPDD-AVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHTSCTT-CCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC-cHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556544332 2211 1334445555666778888888888999999999999999999999998876
No 49
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=69.99 E-value=15 Score=32.35 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=15.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 219 KSSNLSILHSAIRYIQFLRRREREFEHEMERLAR 252 (561)
Q Consensus 219 KaSKAsILrKAiDYIQkLQreEreLE~EkERLRR 252 (561)
.+||-.+++. ||. |+++..+++.|..+|+.
T Consensus 29 ~mSKqELIqE---Yl~-LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 29 NMSKQELIKE---YLE-LEKSLSRMEDENNRLRL 58 (104)
T ss_dssp TSCHHHHHHH---HHH-HHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHH---HHH-HHHHHHHHHHHHHHHHH
Confidence 3677777765 443 44444444444444444
No 50
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=69.79 E-value=5 Score=31.00 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 231 RYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 231 DYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
.|+..|+.+ +++|+.|+..|+.+++.|+.++.
T Consensus 22 ~~~~~LE~~-------v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 22 EYVKSLENR-------VAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 566666555 55666777777777777776543
No 51
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=69.36 E-value=15 Score=28.03 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 232 YIQFLRRREREFEHEMERLAREKIHAQQRLALLKK 266 (561)
Q Consensus 232 YIQkLQreEreLE~EkERLRREneaLQQRLeELKq 266 (561)
|+..|+.+.++++....+|..++--|+.+-.-|++
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 66667776666665555555544444444444443
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.04 E-value=12 Score=37.97 Aligned_cols=16 Identities=6% Similarity=0.059 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhccCC
Q psy11481 197 RAHLKECFEILKRQVP 212 (561)
Q Consensus 197 Rd~LKdcFeeLRdlVP 212 (561)
+.++....+.+.....
T Consensus 483 ~~~i~~~~~~~~~~~~ 498 (597)
T 3oja_B 483 HAEIDTNLRRYRLPKD 498 (597)
T ss_dssp HHHHHHHHHHTTCCCC
T ss_pred HHHhhhhhhhcCcccc
Confidence 3334443333333333
No 53
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=68.67 E-value=9.3 Score=34.79 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=50.1
Q ss_pred HHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11481 203 CFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSARW 272 (561)
Q Consensus 203 cFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQqw 272 (561)
-|+.|=+.+|... .|--. -..-|+.|++++++.+.|.++..+|.+.|..+++++-..+.+++
T Consensus 72 qIe~LIdsLPg~~----~seee----Q~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~~~ 133 (151)
T 1yke_B 72 QINKLIDSLPGVD----VSAEE----QLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDGI 133 (151)
T ss_dssp HHHHHHHHCTTSS----SCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHhCCCCC----CCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999853 22222 23459999999999999999999999999999999998887744
No 54
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=68.54 E-value=3.4 Score=31.92 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 245 HEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 245 ~EkERLRREneaLQQRLeELKqELsQ 270 (561)
..++.|+.++..|..+...|+.++..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788888888888888888765
No 55
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=67.92 E-value=10 Score=31.84 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 231 RYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 231 DYIQkLQreEreLE~EkERLRREneaLQQRLeELKqEL 268 (561)
.||..|+++-.++..++.+|.-|+..|+..++.+|.+|
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 56777777777777777777777777777777777654
No 56
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=67.50 E-value=16 Score=30.48 Aligned_cols=41 Identities=10% Similarity=0.111 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSARWE 273 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQqw~ 273 (561)
.-.|+.+...++.|+.+|+=+++.+..+|+.++++....+.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~ 62 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777788888877777665454
No 57
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=67.49 E-value=15 Score=29.96 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=49.6
Q ss_pred HHHHHHHHHhccCCCCCCcCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 199 HLKECFEILKRQVPPAQEEKK-SSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 199 ~LKdcFeeLRdlVPsLsDn~K-aSKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
++..-.++|..+=+. ....+ .-.+-|.+.--+.+..|+++...++.+++.|.++...++.++++++..|-+
T Consensus 33 e~~~~~~EL~~l~~d-~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 33 ETQKALEELSRAADD-AEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHSCTT-CCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCC-chHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555544222 22222 344555555667788888888889999999999999999999999998865
No 58
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=67.01 E-value=11 Score=33.36 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=45.8
Q ss_pred HHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 203 CFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 203 cFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
-|+.|=+.+|... .|--. -..-|+.|++++++.+.|.++..+|.+.|..+++++-+.+.
T Consensus 72 qIe~LIdsLP~~~----~see~----Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i~ 130 (132)
T 1ykh_B 72 QINKLIDSLPGVD----VSAEE----QLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDFV 130 (132)
T ss_dssp HHHHHHHHSTTTT----CCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCC----CCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999853 22222 23459999999999999999999999999888888766544
No 59
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=66.97 E-value=13 Score=31.55 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 231 RYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 231 DYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
.-++.|+.++.++..+++.|.++...+...|+.++.+..
T Consensus 11 ~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~ 49 (96)
T 3q8t_A 11 RELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAE 49 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 346777777877777777777777777777777766643
No 60
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=66.87 E-value=8.3 Score=36.93 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 226 LHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 226 LrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqEL 268 (561)
|.+|=.-|+.|+.++..+..+.+....|+.+|+++|+.|+.+.
T Consensus 15 l~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 15 IDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344445888888777777776666666666666666666554
No 61
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=66.62 E-value=15 Score=32.62 Aligned_cols=45 Identities=18% Similarity=0.306 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 226 LHSAIRYIQFLRRREREFEH-------EMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 226 LrKAiDYIQkLQreEreLE~-------EkERLRREneaLQQRLeELKqELsQ 270 (561)
++++++-|.-|+.+..-|.. ..|++..|++.|+.+|+.|++++.+
T Consensus 57 ~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 57 HKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 56667778888877766653 3467888888899999999888764
No 62
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=66.46 E-value=11 Score=32.86 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 239 REREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 239 eEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
+-..+..+++.|++|+..|+++++.|+-+|.+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667778888888888888888888766
No 63
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=66.40 E-value=42 Score=27.73 Aligned_cols=62 Identities=10% Similarity=0.117 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 198 AHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALL 264 (561)
Q Consensus 198 d~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeEL 264 (561)
..+++.+.++++..|.+. ..++.+| -|+.....|.+.+++...+.+.++++...|.++|++.
T Consensus 33 ~~vd~~~~~i~~~~~~~~----~~r~~vm-aALnladel~~~~~~~~~~~~~~~~~i~~L~~~le~a 94 (104)
T 1t3u_A 33 RYLDGKMREIRSSGKVIG----ADRVAVM-AALNITHDLLHRKERLDQESSSTRERVRELLDRVDRA 94 (104)
T ss_dssp HHHHHHHHHHHTTTCSCS----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999988743 2344333 2444444444444444445555666666666655543
No 64
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=66.19 E-value=10 Score=33.21 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11481 233 IQFLRRREREFEHEMERLAR 252 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRR 252 (561)
|..|+++.++++.|+++|++
T Consensus 34 v~~l~~e~k~l~ke~~~l~~ 53 (171)
T 2zvf_A 34 VERFFEEWKDQRKEIERLKS 53 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 65
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=65.95 E-value=8.3 Score=33.44 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11481 245 HEMERLAREKIHAQQRLALLKKELSARWE 273 (561)
Q Consensus 245 ~EkERLRREneaLQQRLeELKqELsQqw~ 273 (561)
.+.+++.++++.|+.+++.|+.||.+ |.
T Consensus 89 ~~~~~e~~~~~~L~~~i~~Le~el~~-~R 116 (117)
T 3kin_B 89 KKYEKEKEKNKALKSVIQHLEVELNR-WR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hh
Confidence 33445556677788888888888887 75
No 66
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=65.88 E-value=18 Score=32.31 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 235 FLRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 235 kLQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
.++.+..++..++++|++++.+|+.++..|+.++.
T Consensus 100 ~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 100 AAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555556666666666666666665553
No 67
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=65.71 E-value=8.8 Score=30.89 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 240 EREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 240 EreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
-+.++.+.++|+.|++.|+++.++|+++|.+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888999999999999999998865
No 68
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=64.46 E-value=5.1 Score=31.01 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 243 FEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 243 LE~EkERLRREneaLQQRLeELKqEL 268 (561)
...+++.|.+|+..|+.++++|+.+|
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556677777777777777776553
No 69
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=63.88 E-value=13 Score=28.29 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLA 262 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLe 262 (561)
.+.|+.++.++++.+.-|++|+..|+|-|.
T Consensus 12 ~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 12 VKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 567888888888888888888888887653
No 70
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=63.43 E-value=5.4 Score=27.78 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 233 IQFLRRREREFEHEMERLAREKI 255 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREne 255 (561)
|+.|++++.++.+|+..|+-|+.
T Consensus 2 irrlkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHH
Confidence 44555555544444444444433
No 71
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=63.05 E-value=21 Score=30.36 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 228 SAIRYIQFLRRREREFEHEMERLAREKIHAQQRLAL 263 (561)
Q Consensus 228 KAiDYIQkLQreEreLE~EkERLRREneaLQQRLeE 263 (561)
.|++-.++|+++...++.|+..|+.+++.|+.-.+.
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555444555555555555444443333
No 72
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=62.85 E-value=21 Score=29.18 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 231 RYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 231 DYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
.-+++-.+--+.++.+.++|+.|++.|+++.++|+++|.+
T Consensus 40 ~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 40 SLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445556778888889999999999999999999875
No 73
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=62.43 E-value=7.6 Score=38.41 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 232 YIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 232 YIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
-++.|+++...+....++|+.+..+++++|..||.|+.+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788898888888899999999999999999999876
No 74
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=61.93 E-value=8.6 Score=38.26 Aligned_cols=69 Identities=12% Similarity=0.116 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhccCCCCCCcCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 196 RRAHLKECFEILKRQVPPAQEEKKS--SNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 196 RRd~LKdcFeeLRdlVPsLsDn~Ka--SKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
++..|...++++++-+|.+...... -.+..|+ ..|+.+..+.++.+++|+.|+..|.++|++++.++.+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 398 VTHLLQQELTEAQKGFQDVEAQAATANHTVMALM------ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777776664311111 1133333 3444555555556666666666777777666666543
No 75
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=61.50 E-value=25 Score=29.95 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 240 EREFEHEMERLAREKIHAQQRLALLKKE 267 (561)
Q Consensus 240 EreLE~EkERLRREneaLQQRLeELKqE 267 (561)
....+.++++|+.+++..+++|.+|++.
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3445566777777777777777777753
No 76
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=61.42 E-value=53 Score=31.14 Aligned_cols=72 Identities=14% Similarity=0.082 Sum_probs=49.1
Q ss_pred HHhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 193 EKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRY---IQFLRRREREFEHEMERLAREKIHAQQRLALLKKE 267 (561)
Q Consensus 193 ERKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiDY---IQkLQreEreLE~EkERLRREneaLQQRLeELKqE 267 (561)
|+.|++.-|..|..=|. |.+ +-...+-..+-..+.+| |..|+.+.-.++..+.+...|+..|+.|+..|+..
T Consensus 34 E~e~k~eEKkkiLaER~--kPL-nid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLrGK 108 (180)
T 1j1e_C 34 EAEERRGEKGRALSTRA--QPL-ELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGK 108 (180)
T ss_dssp HHHHHHHHHHHHHHHHS--CCC-CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhC--CCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHHhc
Confidence 45566666666654444 655 32344555555555554 88888888888888888889999999999999654
No 77
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=61.11 E-value=28 Score=26.44 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 227 HSAIRYIQFLRRREREFEHEMERLAREKIHA 257 (561)
Q Consensus 227 rKAiDYIQkLQreEreLE~EkERLRREneaL 257 (561)
+.-..|||.|++++.++..-++.|+--+.+|
T Consensus 6 kelknyiqeleernaelknlkehlkfakael 36 (46)
T 3he4_B 6 KELKNYIQELEERNAELKNLKEHLKFAKAEL 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH
Confidence 3445799999999887776666665444333
No 78
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=60.54 E-value=18 Score=34.44 Aligned_cols=42 Identities=21% Similarity=0.201 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11481 231 RYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSARWE 273 (561)
Q Consensus 231 DYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQqw~ 273 (561)
+|...-++=+.+|+.+++++.+.+..|+.+++.|+.++.. |.
T Consensus 35 EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~-~k 76 (189)
T 2v71_A 35 EFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEA-LK 76 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3555555556667777777777777777777777777665 53
No 79
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=60.01 E-value=23 Score=26.26 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 235 FLRRREREFEHEMERLAREKIHAQQRLAL 263 (561)
Q Consensus 235 kLQreEreLE~EkERLRREneaLQQRLeE 263 (561)
+|+.+-.++..++..|+.|+..|+.-+.+
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 44454444444444444444444444433
No 80
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=59.10 E-value=29 Score=29.57 Aligned_cols=38 Identities=8% Similarity=0.239 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
+..|+++.+.++..++.|+++...++.++..++.++.+
T Consensus 90 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666544
No 81
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=58.41 E-value=33 Score=26.61 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 235 FLRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 235 kLQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
.|+++...+....++|..-..+.+++|..|+.++.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444445555554443
No 82
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=57.15 E-value=30 Score=26.88 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
|..|++++-+++.+-+.|++-+..|+.+++.|+.|...
T Consensus 12 iarlkkdnlqlerdeqnlekiianlrdeiarlenevas 49 (52)
T 3he5_B 12 IARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 56677777777777777777777888888888887643
No 83
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=56.36 E-value=26 Score=29.74 Aligned_cols=39 Identities=23% Similarity=0.168 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 228 SAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKK 266 (561)
Q Consensus 228 KAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKq 266 (561)
+...-...++.+.++.+...+.|..|.+.|+.++++|+.
T Consensus 35 ~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 35 AIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333444455555555566666666666666666653
No 84
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=56.14 E-value=22 Score=31.22 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=23.7
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 226 LHSAIRY----IQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 226 LrKAiDY----IQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
+..|.+| |..|+...++++.+++.++.+...++..|.++++...+
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~~ 144 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQSM 144 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556665 33444445555555555555555555555555544433
No 85
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=56.03 E-value=80 Score=30.46 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhc
Q psy11481 197 RAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQR---LALLKKELSARWE 273 (561)
Q Consensus 197 Rd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQR---LeELKqELsQqw~ 273 (561)
...++..++.|+...|.-......+ +...-+++..+.++-++++.++++|+.+...|+++ +++|. -|.
T Consensus 69 ~~k~~~~~~~L~~~~~~~~~~~~~~----~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~-----p~~ 139 (357)
T 3rrk_A 69 VSQAEQSLTVVGLATVPSSKPFTGS----LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLA-----ALA 139 (357)
T ss_dssp HHHHHHHHHHHTCCCCCCSSCCCSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHT
T ss_pred HHHHHHHHHHhcccccccccCCcch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh-----hhh
Confidence 3456667777776655420101111 55555667777777777777777777777777777 55443 277
Q ss_pred -ccc
Q psy11481 274 -HID 276 (561)
Q Consensus 274 -hID 276 (561)
.+|
T Consensus 140 ~~ld 143 (357)
T 3rrk_A 140 HGLD 143 (357)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 666
No 86
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=55.98 E-value=21 Score=25.69 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 242 EFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 242 eLE~EkERLRREneaLQQRLeELKqEL 268 (561)
++++++..|+.-.++||+|++.|+.-.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777776543
No 87
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=55.94 E-value=41 Score=28.22 Aligned_cols=19 Identities=26% Similarity=0.586 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11481 233 IQFLRRREREFEHEMERLA 251 (561)
Q Consensus 233 IQkLQreEreLE~EkERLR 251 (561)
+++|+++++.++.+++.++
T Consensus 25 VR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 25 VRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566666666666655544
No 88
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=55.73 E-value=25 Score=34.15 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 225 ILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKK 266 (561)
Q Consensus 225 ILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKq 266 (561)
-|..|++-.++|+++...++.|+.+|+.|++.|+.-.++++.
T Consensus 109 AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~ 150 (209)
T 2wvr_A 109 ALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQY 150 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888888888888888888887766655554
No 89
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=55.57 E-value=33 Score=32.62 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 224 SILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKK 266 (561)
Q Consensus 224 sILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKq 266 (561)
.++..+.+-+..|++++..+..+.++|+++...|+.+++++-+
T Consensus 125 elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~ 167 (213)
T 1ik9_A 125 ELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVS 167 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666677777777777777777777766666665543
No 90
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=55.43 E-value=5.5 Score=27.74 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11481 250 LAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 250 LRREneaLQQRLeELKqEL 268 (561)
|+-|+++|.|+++.|++.+
T Consensus 5 lefendaleqkiaalkqki 23 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 4444445555555554443
No 91
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=55.15 E-value=38 Score=29.83 Aligned_cols=35 Identities=29% Similarity=0.267 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 236 LRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 236 LQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
|+++.++.-.+.+++++....|+.+++.|+.+|.+
T Consensus 49 l~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 49 SRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455566666666666666666666665
No 92
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=55.07 E-value=37 Score=28.64 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 229 AIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 229 AiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
|.+-...++.+.+.++.+.+++..|+..|++|+..++.+|.
T Consensus 21 a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld 61 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRD 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555555555554443
No 93
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=54.71 E-value=35 Score=26.47 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 230 IRYIQFLRRREREFEHEMERLAREKIHAQQRLALLK 265 (561)
Q Consensus 230 iDYIQkLQreEreLE~EkERLRREneaLQQRLeELK 265 (561)
-.-+..|..++.++...+++.+.|+..|+.+|+.|.
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344667888888888888888888888888887763
No 94
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=54.66 E-value=43 Score=27.69 Aligned_cols=42 Identities=12% Similarity=0.232 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 229 AIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 229 AiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
+..-++.++.++++++..++.|+.+.+.-+.+-+.++.++.+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 46 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKT 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445577788888888888888877777777666666666543
No 95
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=54.63 E-value=49 Score=26.73 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELKqEL 268 (561)
...++.+.+..+....++..++..|++++..|+.+|
T Consensus 22 ~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~el 57 (81)
T 1ic2_A 22 AEQAEADKKAAEERSKQLEDELVALQKKLKGTEDEL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444443
No 96
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=54.48 E-value=15 Score=38.15 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
|..|+......+.++++|+.....++++|++|++++.+
T Consensus 93 ~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~ 130 (409)
T 1m1j_C 93 IIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQ 130 (409)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333333444457778888888888888888887654
No 97
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=54.46 E-value=32 Score=28.33 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 231 RYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 231 DYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
+.|...+.+..+++.++..|+.+...++++++.|+.++.
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666777777777777777777777777765
No 98
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=54.32 E-value=36 Score=28.72 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q psy11481 233 IQFLRRREREFE 244 (561)
Q Consensus 233 IQkLQreEreLE 244 (561)
|..|++++..+.
T Consensus 29 ieELKekN~~L~ 40 (81)
T 2jee_A 29 IEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 99
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=54.05 E-value=87 Score=28.33 Aligned_cols=73 Identities=12% Similarity=0.074 Sum_probs=47.8
Q ss_pred HHhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 193 EKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIR---YIQFLRRREREFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 193 ERKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiD---YIQkLQreEreLE~EkERLRREneaLQQRLeELKqEL 268 (561)
|+.|++.-|..|..=|. |.+. -...+-..+-.++.+ .|..|+.+.-+++..+.+...|+..|+.|+..|+...
T Consensus 34 E~e~k~eeKkkiLaER~--~pL~-id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~gKf 109 (133)
T 1j1d_C 34 EAEERRGEKGRALSTRA--QPLE-LAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKF 109 (133)
T ss_dssp HHHHHHHHHHHHHHHHT--CCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhC--CCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHccc
Confidence 44466666666544443 5542 233344444444444 4888888888899999999999999999999997544
No 100
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=54.03 E-value=50 Score=27.38 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 227 HSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLK 265 (561)
Q Consensus 227 rKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELK 265 (561)
++..+-|+..+...++++.++++...++..|+.+|..++
T Consensus 29 ~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 29 QEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444454555555555555555555555555555443
No 101
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=53.77 E-value=39 Score=28.91 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 241 REFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 241 reLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
..++.++..|+.|++.|+++++++++++..
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~ 80 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDA 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777777777766654
No 102
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=53.57 E-value=16 Score=37.25 Aligned_cols=32 Identities=9% Similarity=0.071 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 232 YIQFLRRREREFEHEMERLAREKIHAQQRLAL 263 (561)
Q Consensus 232 YIQkLQreEreLE~EkERLRREneaLQQRLeE 263 (561)
-|+.|+++..++++++++++.+.++|++++.+
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELNEILIK 42 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777777666553
No 103
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=53.49 E-value=29 Score=29.57 Aligned_cols=42 Identities=7% Similarity=0.078 Sum_probs=35.6
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 226 LHSAIRY----IQFLRRREREFEHEMERLAREKIHAQQRLALLKKE 267 (561)
Q Consensus 226 LrKAiDY----IQkLQreEreLE~EkERLRREneaLQQRLeELKqE 267 (561)
+..|.+| |..|++..++++.+++.++.+...++.+|+++.+.
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5567776 67788888999999999999999999999988765
No 104
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=53.41 E-value=16 Score=33.47 Aligned_cols=39 Identities=15% Similarity=0.316 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhccCCCCC-CcCCcchHHHHHHHHHHHHHH
Q psy11481 198 AHLKECFEILKRQVPPAQ-EEKKSSNLSILHSAIRYIQFL 236 (561)
Q Consensus 198 d~LKdcFeeLRdlVPsLs-Dn~KaSKAsILrKAiDYIQkL 236 (561)
..|.-+|+.|.++||--. |.++..|-.||++|.|++..|
T Consensus 94 PtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 94 PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred CccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 347789999999999754 567899999999999998766
No 105
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=53.14 E-value=29 Score=29.23 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 226 LHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKE 267 (561)
Q Consensus 226 LrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqE 267 (561)
|..|.+--++|+++..+.+.|+..|+.|++.|+.-+++.+..
T Consensus 29 L~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~l 70 (79)
T 2zxx_A 29 LYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYM 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777777777777777776666665543
No 106
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=52.84 E-value=12 Score=30.42 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 235 FLRRREREFEHEMERLAREKIHAQQRLALLK 265 (561)
Q Consensus 235 kLQreEreLE~EkERLRREneaLQQRLeELK 265 (561)
.|+.....+..|.+.|+.++..|+.++..|+
T Consensus 40 ~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 40 TLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445555566677777777777777776653
No 107
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=52.58 E-value=7.8 Score=37.45 Aligned_cols=48 Identities=23% Similarity=0.345 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 223 LSILHSAIRYIQFLRRRE----------REFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 223 AsILrKAiDYIQkLQreE----------reLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
..+|.--+.|+++-+++. .++..++++|++|+.+++++|++|++++.+
T Consensus 123 ~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e 180 (250)
T 2ve7_C 123 SRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDE 180 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556666666666544443 344566777777777777777777777665
No 108
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=52.02 E-value=45 Score=32.44 Aligned_cols=51 Identities=8% Similarity=0.139 Sum_probs=37.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 220 SSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 220 aSKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
++...|.+-...-+..++.+...++..+++.+.|...++..|+++++.+.+
T Consensus 160 asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~ 210 (228)
T 3q0x_A 160 GNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQ 210 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555577788888888888888888888888888888877653
No 109
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=51.19 E-value=24 Score=25.70 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 243 FEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 243 LE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
++++-.+|-.|.+.|++|-+.|++.|.+
T Consensus 5 lq~dE~kLl~ekE~l~~r~eqL~~kLe~ 32 (34)
T 1a93_A 5 VQAEEQKLISEEDLLRKRREQLKHKLEQ 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678889999999999999999999876
No 110
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=50.61 E-value=45 Score=31.56 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 226 LHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 226 LrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqEL 268 (561)
+.-|.+-++.|+++...++.++...+.++..+++.|++.-.+|
T Consensus 130 i~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~eL 172 (175)
T 3mud_A 130 ICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLEL 172 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555777777777777777777777766666666555544
No 111
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=50.12 E-value=53 Score=30.51 Aligned_cols=23 Identities=9% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHhH-HHHHHHHHHHHhccCCC
Q psy11481 191 KLEKNR-RAHLKECFEILKRQVPP 213 (561)
Q Consensus 191 aLERKR-Rd~LKdcFeeLRdlVPs 213 (561)
.++|-+ |+.+-..|.+|-..+-.
T Consensus 30 l~~rL~~Rd~~E~~~~~l~~e~~~ 53 (152)
T 3a7p_A 30 LIRRLTDRNDKEAHLNELFQDNSG 53 (152)
T ss_dssp ------------------------
T ss_pred HHHHHHHhhhHHHHHHHHHHhhcc
Confidence 455554 77777777777666544
No 112
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=49.92 E-value=16 Score=25.40 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 243 FEHEMERLAREKIHAQQRLALLKK 266 (561)
Q Consensus 243 LE~EkERLRREneaLQQRLeELKq 266 (561)
++-|.+.|++++.+|+|+++.|++
T Consensus 5 lefendaleqkiaalkqkiaslkq 28 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIASLKQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhccHHHHHHHHHHHHHHHHhcC
Confidence 455666778888889999998873
No 113
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.67 E-value=2.1e+02 Score=28.51 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11481 248 ERLAREKIHAQQRLALLKKE 267 (561)
Q Consensus 248 ERLRREneaLQQRLeELKqE 267 (561)
++|++|++.|+..++++..+
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 445 TQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhh
Confidence 33334444444444433333
No 114
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=49.61 E-value=24 Score=25.75 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 242 EFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 242 eLE~EkERLRREneaLQQRLeELKqELs 269 (561)
+++..+|+|-.++..|+.+++.|+.-|.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3455566666666667767777765544
No 115
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=49.47 E-value=53 Score=27.49 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 229 AIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 229 AiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqEL 268 (561)
|.+-...++.+.+.++.+.+++..++..|++++..|+.++
T Consensus 21 a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~el 60 (101)
T 3u59_A 21 AIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEV 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555444
No 116
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=49.41 E-value=16 Score=28.21 Aligned_cols=31 Identities=10% Similarity=0.183 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 231 RYIQFLRRREREFEHEMERLAREKIHAQQRL 261 (561)
Q Consensus 231 DYIQkLQreEreLE~EkERLRREneaLQQRL 261 (561)
+|+..+.++-..+..|+++|++++..|+++|
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455555555556666666666666666553
No 117
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=49.27 E-value=43 Score=29.24 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 231 RYIQFLRRREREFEHEMERLAREKIHAQQRLALL 264 (561)
Q Consensus 231 DYIQkLQreEreLE~EkERLRREneaLQQRLeEL 264 (561)
+.|..|+.+.-+++..+.+...|+..|+.|+.+|
T Consensus 56 ~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 56 DWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 4477777777777777777777888887777776
No 118
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=48.67 E-value=18 Score=29.80 Aligned_cols=33 Identities=15% Similarity=0.034 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLK 265 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELK 265 (561)
|..|-+...+.+.++++|+++...|.+|+.+++
T Consensus 30 IeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 30 LTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555566666666655555555554
No 119
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=48.42 E-value=32 Score=34.31 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11481 231 RYIQFLRRREREFEHEMERLA 251 (561)
Q Consensus 231 DYIQkLQreEreLE~EkERLR 251 (561)
+|+..|+++..++++++++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~ 267 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKAL 267 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777777777773
No 120
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=48.39 E-value=37 Score=28.44 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 230 IRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 230 iDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
..-++.++.++++++..++.|+.+.+.-+.+-+.++.++.+
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 52 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGR 52 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888888888877777777766666666543
No 121
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=48.22 E-value=63 Score=28.44 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=34.3
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 229 AIRY-IQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 229 AiDY-IQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
|.-| |..|+.+-.++++.+.+++||.+...+.++.+++....
T Consensus 27 al~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~ 69 (103)
T 4h22_A 27 NFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSI 69 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556 88899999999999999998888888888888877543
No 122
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=48.20 E-value=12 Score=37.02 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 232 YIQFLRRREREFEHEMERLAREKIHAQQ 259 (561)
Q Consensus 232 YIQkLQreEreLE~EkERLRREneaLQQ 259 (561)
.|..|+++++++++|+++|+++.+.+++
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5777777777777777777666655544
No 123
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=48.17 E-value=40 Score=34.04 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 234 QFLRRREREFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 234 QkLQreEreLE~EkERLRREneaLQQRLeELKqEL 268 (561)
.+|+......+.+++.|+.+.+.++.+|.+|++++
T Consensus 15 ~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i 49 (323)
T 1lwu_C 15 RILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQL 49 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555555543
No 124
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=47.82 E-value=44 Score=24.77 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 243 FEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 243 LE~EkERLRREneaLQQRLeELKqEL 268 (561)
++.+++.|-.++..|..+.+.|+..|
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34444444445555555555555444
No 125
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=47.00 E-value=25 Score=30.80 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 232 YIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 232 YIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
....|+++..++++++++|++....|+.+++.++..+.+
T Consensus 96 ~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 96 RLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345566666677777777777777777777766666554
No 126
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=46.68 E-value=57 Score=30.40 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 242 EFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 242 eLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
+.++++++-|||- .|++||...|+||..
T Consensus 223 ~v~~~~~k~Qrey-~LrEQlk~IqkELGe 250 (252)
T 3ljc_A 223 RVKKQMEKSQREY-YLNEQMKAIQKELGE 250 (252)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhCC
Confidence 3445555555554 688999999999864
No 127
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=46.37 E-value=50 Score=27.18 Aligned_cols=38 Identities=13% Similarity=0.256 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
+..++.+..++..++..|+.+...++.+++.+++.+..
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777888888888888888888888888764
No 128
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=46.24 E-value=38 Score=24.35 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11481 245 HEMERLAREKIHAQQRLALLKK 266 (561)
Q Consensus 245 ~EkERLRREneaLQQRLeELKq 266 (561)
+|+..|++|+.+|+-+++.|++
T Consensus 9 qeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 9 QEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555555555555555553
No 129
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=45.83 E-value=56 Score=28.63 Aligned_cols=35 Identities=9% Similarity=0.248 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11481 238 RREREFEHEMERLAREKIHAQQRLALLKKELSARWE 273 (561)
Q Consensus 238 reEreLE~EkERLRREneaLQQRLeELKqELsQqw~ 273 (561)
+...-++..+++|++++.+|++.++.|+..+.. |.
T Consensus 95 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~-~~ 129 (148)
T 3gpv_A 95 HRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAK-YE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 334556677778888888888888888877765 44
No 130
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=45.64 E-value=50 Score=28.14 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 226 LHSAIRYIQFLRRREREFEHEMERLAREKIHAQ 258 (561)
Q Consensus 226 LrKAiDYIQkLQreEreLE~EkERLRREneaLQ 258 (561)
|..|.+--.+|+++....+.|+..|+.|++.|+
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555556666666655554
No 131
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.36 E-value=70 Score=27.78 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 226 LHSAIRYIQFLRRREREFEHEMERLA 251 (561)
Q Consensus 226 LrKAiDYIQkLQreEreLE~EkERLR 251 (561)
|.++.+-|..|+.+....+.++.+|+
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~ 32 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLR 32 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34555566666666666666666655
No 132
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.06 E-value=54 Score=32.73 Aligned_cols=34 Identities=12% Similarity=0.053 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 236 LRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 236 LQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
++++..+++++++..++|.+.|+++-+.++.++.
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNG 459 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhh
Confidence 3333333444444444444444444444444443
No 133
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=44.31 E-value=39 Score=29.40 Aligned_cols=34 Identities=29% Similarity=0.264 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 231 RYIQFLRRREREFEHEMERLAREKIHAQQRLALL 264 (561)
Q Consensus 231 DYIQkLQreEreLE~EkERLRREneaLQQRLeEL 264 (561)
+-+..|+++...++.|.++|++++..|.-+|+..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888888888999888888888664
No 134
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=44.05 E-value=82 Score=27.82 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 224 SILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 224 sILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
.|...|-.||..|+.+..+|+.|++.-+.+++...-..+.|+.++.
T Consensus 33 ~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 33 NMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888887777766554444444444444443
No 135
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=43.95 E-value=24 Score=30.15 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 247 MERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 247 kERLRREneaLQQRLeELKqELsQ 270 (561)
+.+|+.+...|++++.+++.++.+
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~ 32 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVAR 32 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555443
No 136
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=43.72 E-value=57 Score=30.99 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=43.0
Q ss_pred HHhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 193 EKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIR---YIQFLRRREREFEHEMERLAREKIHAQQRLALLKK 266 (561)
Q Consensus 193 ERKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiD---YIQkLQreEreLE~EkERLRREneaLQQRLeELKq 266 (561)
|+.|++.-|..+.. +..|.+.-. . +-..+-..+.+ +|..|+.+.-.++..+.+...|+..|+.|+..|+.
T Consensus 32 E~e~k~eeKkkiLa--ER~kPLnid-~-se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVnDLrG 104 (182)
T 1ytz_I 32 EAAAKEVEKQNYLA--EHSPPLSLP-G-SMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLRG 104 (182)
T ss_dssp HHHHHHHHHHHHHH--HHSCCCCCC-C-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGTC
T ss_pred HHHHHHHHHHHHHH--HhCCCCCCC-C-CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 44455555555544 444665322 2 44444444444 47777777777777777778888888888777753
No 137
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=43.65 E-value=36 Score=25.24 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 241 REFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 241 reLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
.+++..+|+|-.++..|+.+.+.|+.-|..
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 467778888888888888888888877654
No 138
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=43.58 E-value=34 Score=35.14 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 235 FLRRREREFEHEMERLAREKIHAQQRL 261 (561)
Q Consensus 235 kLQreEreLE~EkERLRREneaLQQRL 261 (561)
.|+++.+++++++++++.|.+.++++|
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 14 HLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 139
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=43.48 E-value=43 Score=31.06 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccccCCCCC
Q psy11481 248 ERLAREKIHAQQRLALLKKELSARWEHIDFNTLIPDN 284 (561)
Q Consensus 248 ERLRREneaLQQRLeELKqELsQqw~hIDfStLlPd~ 284 (561)
.+++++.+.++++|+++|+++..--..+||..++.+.
T Consensus 18 ~q~~~Ql~~~k~Ql~q~k~qy~sltG~r~~~~~l~~~ 54 (213)
T 1r8i_A 18 EQMAQQLEQLKSQLETQKNMYESMAKTTNLGDLLGTS 54 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGSSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHhcCh
Confidence 3444445555666666666654422334555554444
No 140
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=43.11 E-value=45 Score=30.56 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 231 RYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 231 DYIQkLQreEreLE~EkERLRREneaLQQRLeELKqEL 268 (561)
+....|+++.+++++++++|++....|+..++.++...
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (278)
T 1r8e_A 79 ELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQM 116 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34667888888888888888888888888887776543
No 141
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=43.06 E-value=81 Score=25.73 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 232 YIQFLRRREREFEHEMERLAREKIHAQQRLALLK 265 (561)
Q Consensus 232 YIQkLQreEreLE~EkERLRREneaLQQRLeELK 265 (561)
-|++|-+-+..+.+|+..|+++...|+..-..|+
T Consensus 28 kiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 28 KVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 4777877777777777777777666666655554
No 142
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=43.04 E-value=47 Score=29.05 Aligned_cols=36 Identities=8% Similarity=0.237 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELKqEL 268 (561)
+..|+++..++++++++|++....|+.+++.++..+
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 118 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHL 118 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666655543
No 143
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=42.71 E-value=53 Score=29.13 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 233 IQFLRRREREFEH--------EMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 233 IQkLQreEreLE~--------EkERLRREneaLQQRLeELKqELsQ 270 (561)
.++|++.++.++. -+++-+.++.+|+.+|++||++|..
T Consensus 55 rQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 55 RQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777666662 3345566788899999999999875
No 144
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=42.31 E-value=47 Score=28.91 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 236 LRRREREFEHEMERLAREKIHAQQRLALLK 265 (561)
Q Consensus 236 LQreEreLE~EkERLRREneaLQQRLeELK 265 (561)
|.++-.++..|+.+|++|.+.|++++...+
T Consensus 30 l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 30 LPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555443
No 145
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=42.26 E-value=6.4 Score=36.72 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 246 EMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 246 EkERLRREneaLQQRLeELKqELsQ 270 (561)
+.+++.+|.++|++++++|++++.+
T Consensus 257 ~~~~~~~~~~~l~~~~~~l~~~l~~ 281 (285)
T 3rvy_A 257 HEDNINNEIIKLREEIVELKELIKT 281 (285)
T ss_dssp -------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4456667777777777777766654
No 146
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=42.23 E-value=47 Score=24.63 Aligned_cols=32 Identities=22% Similarity=0.167 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 234 QFLRRREREFEHEMERLAREKIHAQQRLALLK 265 (561)
Q Consensus 234 QkLQreEreLE~EkERLRREneaLQQRLeELK 265 (561)
.+|+.+-.++..++..|+.|+..|+.-+.+..
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 56888888888888888888888888776653
No 147
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=42.19 E-value=51 Score=28.49 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=1.3
Q ss_pred HHHHHHhccCCCCCCcCCcchH
Q psy11481 202 ECFEILKRQVPPAQEEKKSSNL 223 (561)
Q Consensus 202 dcFeeLRdlVPsLsDn~KaSKA 223 (561)
..|++|...+-.-.+.-+.+|.
T Consensus 15 ~K~eel~~~~~~~~~~l~~~k~ 36 (129)
T 3tnu_B 15 TKYEELQQTAGRHGDDLRNTKH 36 (129)
T ss_dssp -------------------CHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3456676666553343444443
No 148
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=42.17 E-value=47 Score=29.33 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 245 HEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 245 ~EkERLRREneaLQQRLeELKqELsQ 270 (561)
+..+.++++.++|.+++++|++++.+
T Consensus 138 ~~~~~l~~~i~~L~~~l~~le~~~~~ 163 (166)
T 3pjs_K 138 AAEEAYTRTTRALHERFDRLERMLDD 163 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456778888899999999888765
No 149
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=42.08 E-value=78 Score=27.58 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=42.3
Q ss_pred hhHHH-HhHHHHHHHHHHHHhccCCCCCCcCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 189 HNKLE-KNRRAHLKECFEILKRQVPPAQEEKKSSNL-SILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALL 264 (561)
Q Consensus 189 HNaLE-RKRRd~LKdcFeeLRdlVPsLsDn~KaSKA-sILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeEL 264 (561)
-...| ..||..|.++.-.| -|+.+.+ .++ .+.+.=.+.|..|+.+.-+++..+.+...|+..|+.|+.+|
T Consensus 18 k~q~ereeKkkiLaER~kpL--~id~l~~----~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 18 KRQTEREKKKKILAERRKVL--AIDHLNE----DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp --CCHHHHHHHHHHHHHHHH--HHTTCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCC--CCCCCCH----HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 33445 33666777766666 3555432 121 22222234477788877778888888888888888888777
No 150
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=41.82 E-value=11 Score=36.13 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy11481 233 IQFLRRREREFEHEMERLAREKIH---AQQRLALLKKEL 268 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREnea---LQQRLeELKqEL 268 (561)
...|++++++|++|..+|+.+..+ |+++.++|++.|
T Consensus 21 ~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 21 LKNTYTENQHLKERLEELAQLESEVADLKKENKDLKESL 59 (255)
T ss_dssp -----CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666676666666554433 333444444443
No 151
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=41.57 E-value=41 Score=24.67 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 242 EFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 242 eLE~EkERLRREneaLQQRLeELKqELs 269 (561)
+++...+.|-.++..|+.+.+.|+.-|.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3445555566666666666666665543
No 152
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=40.79 E-value=63 Score=27.91 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 232 YIQFLRRREREFEHEMERLAREKIHAQQRLALLKKE 267 (561)
Q Consensus 232 YIQkLQreEreLE~EkERLRREneaLQQRLeELKqE 267 (561)
||..|+++...+..+..+|.-|...++..++.+|.+
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~K 56 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 56 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555554444444444444444444444444433
No 153
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=40.72 E-value=1e+02 Score=27.77 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 241 REFEHEMERLAREKIHAQQRLALLKKE 267 (561)
Q Consensus 241 reLE~EkERLRREneaLQQRLeELKqE 267 (561)
++++.|++.|.++.+.+..++++|+++
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444
No 154
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=40.70 E-value=65 Score=26.85 Aligned_cols=38 Identities=3% Similarity=0.003 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
|..|+.+..++.-++|++..+...++++..++-.+|.+
T Consensus 29 l~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~ 66 (83)
T 2xdj_A 29 LSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDS 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555543
No 155
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=40.62 E-value=66 Score=27.89 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 238 RREREFEHEMERLAREKIHAQQRLALL 264 (561)
Q Consensus 238 reEreLE~EkERLRREneaLQQRLeEL 264 (561)
++.-+.+.|++.|+.++.+|+++|+..
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~ 37 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNT 37 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333444556666666666666666544
No 156
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=40.39 E-value=72 Score=27.85 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 230 IRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 230 iDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
.+.+..|+++.++++..++.|+......+..+.....++.
T Consensus 87 ~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~ 126 (142)
T 3gp4_A 87 KKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELK 126 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555566556665555665555555555555554443
No 157
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=39.48 E-value=46 Score=29.91 Aligned_cols=34 Identities=9% Similarity=0.118 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLKK 266 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELKq 266 (561)
+..|+++.++++..+..++.+...|++|+++++.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567788777888887777777777777777774
No 158
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=39.47 E-value=41 Score=32.22 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 225 ILHSAIRYIQFLRRREREFEHEMERLAREK 254 (561)
Q Consensus 225 ILrKAiDYIQkLQreEreLE~EkERLRREn 254 (561)
++..+++.|..|+.++..+++|.+||.+|.
T Consensus 155 Li~~~L~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 155 LICYCLDTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455556666666666666666665543
No 159
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=39.38 E-value=48 Score=23.83 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 242 EFEHEMERLAREKIHAQQRLALLKKE 267 (561)
Q Consensus 242 eLE~EkERLRREneaLQQRLeELKqE 267 (561)
++++|+.+.+.|+-.|.+..++|+++
T Consensus 5 qlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45566666677777777777777765
No 160
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.98 E-value=45 Score=29.00 Aligned_cols=12 Identities=33% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHhccCCCC
Q psy11481 203 CFEILKRQVPPA 214 (561)
Q Consensus 203 cFeeLRdlVPsL 214 (561)
.|++|+..+-.-
T Consensus 18 K~eel~~~~~~~ 29 (131)
T 3tnu_A 18 KTEELNREVATN 29 (131)
T ss_dssp ------------
T ss_pred HHHHHHHHHHhh
Confidence 456666665543
No 161
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=38.94 E-value=65 Score=30.92 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q psy11481 228 SAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSARWEHIDF 277 (561)
Q Consensus 228 KAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQqw~hIDf 277 (561)
+-..-...|.++.+..+.|++.|+++...|+.+...++.++.++-.+|.+
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i 73 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEV 73 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhH
Confidence 33444777888888888999999999999999998888888776666653
No 162
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=38.35 E-value=62 Score=23.75 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 234 QFLRRREREFEHEMERLAREKIHAQQRL 261 (561)
Q Consensus 234 QkLQreEreLE~EkERLRREneaLQQRL 261 (561)
.+|+.+-.++..+++.|+.|+..|+.-|
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4677777777788888888887776544
No 163
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.86 E-value=46 Score=33.91 Aligned_cols=32 Identities=9% Similarity=0.181 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 236 LRRREREFEHEMERLAREKIHAQQRLALLKKE 267 (561)
Q Consensus 236 LQreEreLE~EkERLRREneaLQQRLeELKqE 267 (561)
|+++.+++++++++|++++..++.++++++++
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 39 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEI 39 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 164
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.73 E-value=50 Score=33.97 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
++.|+++.+.++.|.+.++.|.+.+++++..++.++.
T Consensus 51 lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~ 87 (428)
T 4b4t_K 51 LKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVK 87 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555666666666666666665543
No 165
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=37.68 E-value=56 Score=23.83 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 242 EFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 242 eLE~EkERLRREneaLQQRLeELKqELs 269 (561)
+++...|.|-.++..|+.+++.||.-|.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 3444555666666666666666665543
No 166
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=37.63 E-value=76 Score=25.54 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 227 HSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 227 rKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
.+|-.-+.+|++.+-.+.+.+++|+...-+-.|+++.|.+-|-+
T Consensus 7 tRse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 7 TRSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555567777777777777777777777777777777766655
No 167
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=37.60 E-value=1.4e+02 Score=32.65 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=7.0
Q ss_pred ccccccCCC--CCccccccccCccCCCcccccCC
Q psy11481 274 HIDFNTLIP--DNMEVDIPYDNHHHESSLLSYGK 305 (561)
Q Consensus 274 hIDfStLlP--d~lEIDRvlRQa~~DSsilS~~~ 305 (561)
+++-..|.| ++-.+-...|.+.-|. +.+.++
T Consensus 187 Qv~a~dL~p~~~~q~Lp~lKmrP~kD~-Vp~~fK 219 (562)
T 3ghg_A 187 QVIAKDLLPSRDRQHLPLIKMKPVPDL-VPGNFK 219 (562)
T ss_dssp HHHTTCCCCSCCCC--------------------
T ss_pred HHhhcccCCccccccchhccccccccc-Cchhhh
Confidence 344556666 6666666667777777 666655
No 168
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=37.53 E-value=40 Score=29.22 Aligned_cols=45 Identities=18% Similarity=0.306 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 226 LHSAIRYIQFLRRREREFEH-------EMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 226 LrKAiDYIQkLQreEreLE~-------EkERLRREneaLQQRLeELKqELsQ 270 (561)
++...+-|.-|+.+..-|.. ..|++..|++.|+.+++.|++++.+
T Consensus 35 ~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~ 86 (94)
T 3jsv_C 35 HKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34445666666666655553 3456666777777777777776543
No 169
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=37.37 E-value=35 Score=29.13 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 240 EREFEHEMERLAREKIHAQQRLALLKKE 267 (561)
Q Consensus 240 EreLE~EkERLRREneaLQQRLeELKqE 267 (561)
-++++.++++|++|.+.|+.+++.|+.-
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3567777888888888888888888853
No 170
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=37.23 E-value=89 Score=26.25 Aligned_cols=35 Identities=29% Similarity=0.272 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccC
Q psy11481 244 EHEMERLAREKIHAQQRLALLKKELSARWEHIDFNTL 280 (561)
Q Consensus 244 E~EkERLRREneaLQQRLeELKqELsQqw~hIDfStL 280 (561)
++|-++.+++..+-++++++++..+.+ ++||+..|
T Consensus 44 ree~~~~~~~~~er~~Kl~~~~e~l~~--~GI~~eeL 78 (86)
T 3nr7_A 44 REEESAAAAEVEERTRKLQQYREMLIA--DGIDPNEL 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--TCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHH
Confidence 344445566677778889999999887 67776544
No 171
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=36.99 E-value=39 Score=23.39 Aligned_cols=20 Identities=40% Similarity=0.474 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11481 249 RLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 249 RLRREneaLQQRLeELKqEL 268 (561)
+|-+|.+.||.||..|++.|
T Consensus 5 elykeledlqerlrklrkkl 24 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44555555666666666655
No 172
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=36.92 E-value=1e+02 Score=23.55 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 245 HEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 245 ~EkERLRREneaLQQRLeELKqELsQ 270 (561)
+|+..|+.|.++|.++|+.|+..|..
T Consensus 20 eelaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777888888888877654
No 173
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=36.81 E-value=48 Score=27.39 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=39.0
Q ss_pred HHHHHhccCCCCCCc----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 203 CFEILKRQVPPAQEE----KKSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 203 cFeeLRdlVPsLsDn----~KaSKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
+-+.|++.+..|.+. ....|+.-.. -++.--+=-+.++.+..+|+.+.+.|+++.++|+++|.+
T Consensus 17 RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~----iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 17 RRNELKRSFFALRDQIPELENNEKAPKVV----ILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTCTTCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566655554321 1223443322 223333334567777888888899999999999998875
No 174
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=36.79 E-value=54 Score=24.73 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 230 IRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 230 iDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
+|-+..|+.+...+++.+..| ..||+.|+..+.
T Consensus 8 ydlvsel~~r~e~LE~Ri~~L-------E~KLd~L~~~l~ 40 (43)
T 2pnv_A 8 YDMISDLNERSEDFEKRIVTL-------ETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 455666666655555555444 445555555443
No 175
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=36.33 E-value=1.2e+02 Score=26.88 Aligned_cols=47 Identities=13% Similarity=0.190 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 224 SILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 224 sILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
.-|+++..-....+++-++-.+||.+++.+.++|-.++-.++.|..+
T Consensus 55 r~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar 101 (114)
T 2xzr_A 55 RTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIAR 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34555666667777777777788888888888887777777776543
No 176
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=36.32 E-value=48 Score=27.64 Aligned_cols=31 Identities=13% Similarity=0.053 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhhhccc
Q psy11481 245 HEMERLAREKIHAQQRLALLKKEL-SARWEHI 275 (561)
Q Consensus 245 ~EkERLRREneaLQQRLeELKqEL-sQqw~hI 275 (561)
++++.|+.+.++|+++|.+|+... ..+|...
T Consensus 4 ~~l~~l~~~~~~l~~~l~~l~~~~~~~~w~~~ 35 (149)
T 1rtm_1 4 VKLANMEAEINTLKSKLELTNKLHAFSMGKKS 35 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCeEEe
Confidence 345555566666666666666653 4556533
No 177
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.17 E-value=84 Score=32.99 Aligned_cols=38 Identities=8% Similarity=0.106 Sum_probs=19.7
Q ss_pred cccccCCCCCCCchhhhhHHHHhHHHHHHHHHHHHhccCCCC
Q psy11481 173 NDMIKKRSGISGIREVHNKLEKNRRAHLKECFEILKRQVPPA 214 (561)
Q Consensus 173 ~se~kKRPg~SeRRaTHNaLERKRRd~LKdcFeeLRdlVPsL 214 (561)
.+..-|||.+=.-|.+--..| ..++.++++|+..|=.+
T Consensus 42 eDwG~kCPsGCrLqg~Ldk~e----r~~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 42 EDWNTKCPSGCRMKGLIDEVD----QDFTSRINKLRDSLFNY 79 (390)
T ss_pred hhccCCCCccchHHHHHHHhh----hhHHHHHHHHHHHHHHH
Confidence 345778887444444433333 34555555555555443
No 178
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.10 E-value=55 Score=24.93 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 244 EHEMERLAREKIHAQQRLALLKKE 267 (561)
Q Consensus 244 E~EkERLRREneaLQQRLeELKqE 267 (561)
..|++.-++++..||.|+.+|+..
T Consensus 15 drEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 15 DREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555566655543
No 179
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=35.98 E-value=56 Score=23.98 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 242 EFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 242 eLE~EkERLRREneaLQQRLeELKqELs 269 (561)
+++...|+|-.++..|..+++.|+.-|.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 4455566666666666666677666554
No 180
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=35.88 E-value=87 Score=26.37 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 233 IQFLRRREREFEH--------EMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 233 IQkLQreEreLE~--------EkERLRREneaLQQRLeELKqELsQ 270 (561)
.++|+..++.++. -+++-+.++..|+.+|.+||++|..
T Consensus 25 ~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd 70 (78)
T 2ic6_A 25 RQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELAD 70 (78)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777766662 3445566788899999999999875
No 181
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=35.84 E-value=1.1e+02 Score=26.01 Aligned_cols=39 Identities=28% Similarity=0.331 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 230 IRYIQFLRRREREFE----HEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 230 iDYIQkLQreEreLE----~EkERLRREneaLQQRLeELKqEL 268 (561)
-.|=+.|-++++... .|.++|..+++.|+..++.||.++
T Consensus 27 e~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en 69 (83)
T 1uii_A 27 SQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKEN 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555444332 344445555555555555554443
No 182
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=35.75 E-value=36 Score=34.59 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=43.1
Q ss_pred HhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 194 KNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSA-----------IRYIQFLRRREREFEHEMERLAREKIHAQQRLA 262 (561)
Q Consensus 194 RKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKA-----------iDYIQkLQreEreLE~EkERLRREneaLQQRLe 262 (561)
|+++..|+..+.+|...-|.+.. -...+.=|..- .++.+.+-++++++..+.+++.+++++|.++++
T Consensus 23 r~~~eql~~~i~~L~~~ap~W~~--aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~Ere~~~~Rd~~a~~k~~Le~~ie 100 (302)
T 3ibp_A 23 RQEQEQLQSRIQSLMQRAPVWLA--AQNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIE 100 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHChHHHH--HHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777776531 11122222221 256655555567777777788888777777777
Q ss_pred HHHH
Q psy11481 263 LLKK 266 (561)
Q Consensus 263 ELKq 266 (561)
.|.+
T Consensus 101 rLs~ 104 (302)
T 3ibp_A 101 RLSQ 104 (302)
T ss_dssp HHHS
T ss_pred HHcC
Confidence 7665
No 183
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=34.70 E-value=42 Score=25.09 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11481 231 RYIQFLRRREREFEHEMERL 250 (561)
Q Consensus 231 DYIQkLQreEreLE~EkERL 250 (561)
.||..|+++...|+.++++|
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l 63 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRL 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46666666655555444444
No 184
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=34.43 E-value=1.3e+02 Score=25.31 Aligned_cols=49 Identities=8% Similarity=0.139 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHh
Q psy11481 221 SNLSILHSAIRYIQFLRRREREFEHEM--------ERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 221 SKAsILrKAiDYIQkLQreEreLE~Ek--------ERLRREneaLQQRLeELKqELs 269 (561)
.|-..|+++-..+...++-.++|+.|+ ..+..+.+..++.|+.|++++-
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk 91 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFK 91 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555554445555443 3455556666666666666654
No 185
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=34.42 E-value=64 Score=25.61 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 244 EHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 244 E~EkERLRREneaLQQRLeELKqELs 269 (561)
.+++|.|++|+-.|+++|+.=..+|+
T Consensus 9 ~~QVe~Lk~ENshLrrEL~dNS~~ls 34 (54)
T 1deb_A 9 LKQVEALKMENSNLRQELEDNSNHLT 34 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHhhHHHHH
Confidence 34455555555555555554444433
No 186
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=34.28 E-value=17 Score=36.58 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 234 QFLRRREREFEHEMERLAREKIHAQQRLALLKK 266 (561)
Q Consensus 234 QkLQreEreLE~EkERLRREneaLQQRLeELKq 266 (561)
.+|+.+...++++++.|+...+.++.+|++|+.
T Consensus 7 ~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~ 39 (319)
T 1fzc_C 7 MKYEASILTHDSSIRYLQEIYNSNNQKIVNLKE 39 (319)
T ss_dssp ---CTTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444443
No 187
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=33.74 E-value=94 Score=31.42 Aligned_cols=38 Identities=13% Similarity=-0.034 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
|.....+.+.|+.+++.++.++.+|+++|.+|+..+..
T Consensus 21 i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~ 58 (323)
T 1lwu_C 21 GVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSR 58 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445555666677777788888888888888876543
No 188
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=33.48 E-value=1.1e+02 Score=26.18 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 240 EREFEHEMERLAREKIHAQQRLALLK 265 (561)
Q Consensus 240 EreLE~EkERLRREneaLQQRLeELK 265 (561)
+.++..+++.++.|+..|++++.+|+
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555554444
No 189
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=33.10 E-value=52 Score=26.09 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 245 HEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 245 ~EkERLRREneaLQQRLeELKqELsQ 270 (561)
.+++++++++.+|++.++.|+..+..
T Consensus 46 ~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 46 ERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555443
No 190
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=33.01 E-value=54 Score=28.48 Aligned_cols=23 Identities=9% Similarity=0.133 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 241 REFEHEMERLAREKIHAQQRLAL 263 (561)
Q Consensus 241 reLE~EkERLRREneaLQQRLeE 263 (561)
..+++++.+|+++.+.....+.+
T Consensus 21 ~~l~~~~~el~~~l~~~~~~~~e 43 (125)
T 1joc_A 21 EKLQTKVLELQRKLDNTTAAVQE 43 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444443333333333
No 191
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=32.79 E-value=53 Score=26.65 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 247 MERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 247 kERLRREneaLQQRLeELKqELs 269 (561)
+..|++++..|+.+.++|+.++.
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555554443
No 192
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.30 E-value=1.2e+02 Score=23.14 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 242 EFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 242 eLE~EkERLRREneaLQQRLeELKqELs 269 (561)
++.+.|++.-+|+...++++++||..+-
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777654
No 193
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=32.13 E-value=78 Score=27.72 Aligned_cols=42 Identities=14% Similarity=0.328 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 229 AIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 229 AiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
.-+=+..|+++...++..++.|++....++.++..++..+.+
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~ 137 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQE 137 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455699999999999999999999999999999999988765
No 194
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=31.65 E-value=1.1e+02 Score=25.22 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 242 EFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 242 eLE~EkERLRREneaLQQRLeELKqELs 269 (561)
++..++++++..+..|..+|.+++.++.
T Consensus 25 ~~~~~l~~~q~~i~~lE~el~~~r~e~~ 52 (86)
T 1x8y_A 25 SLARERDTSRRLLAEKEREMAEMRARMQ 52 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 195
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=31.57 E-value=82 Score=22.63 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 246 EMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 246 EkERLRREneaLQQRLeELKqEL 268 (561)
|+..|++|+.+|+++++.|+=|+
T Consensus 3 eiaalkqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666554
No 196
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=31.46 E-value=1e+02 Score=29.34 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q psy11481 259 QRLALLKKEL 268 (561)
Q Consensus 259 QRLeELKqEL 268 (561)
.+|.+|+++|
T Consensus 189 ~KIR~lq~~L 198 (213)
T 1ik9_A 189 TKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4445555444
No 197
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=31.38 E-value=1.5e+02 Score=24.63 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=23.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH-HHHHHh
Q psy11481 221 SNLSILHSAIRYIQFLRRREREFEHEMERL----------AREKIHAQQRLAL-LKKELS 269 (561)
Q Consensus 221 SKAsILrKAiDYIQkLQreEreLE~EkERL----------RREneaLQQRLeE-LKqELs 269 (561)
.|-..|+.+-..+....+-.++|+-|+..+ ..+.+..++.|+. |++++-
T Consensus 31 ~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk 90 (97)
T 3onj_A 31 QRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQ 90 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445554444444444444444444444 3444444445554 554443
No 198
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=31.36 E-value=45 Score=24.93 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 247 MERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 247 kERLRREneaLQQRLeELKqELs 269 (561)
++.|+.++..|.++|++|+..+.
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777777777777776654
No 199
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=31.36 E-value=1e+02 Score=27.62 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 233 IQFLRRREREFEH--------EMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 233 IQkLQreEreLE~--------EkERLRREneaLQQRLeELKqELsQ 270 (561)
.++|+..++.++. -+++-+.++..|+.+|++||++|..
T Consensus 42 rQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd 87 (113)
T 4fi5_A 42 RQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLAD 87 (113)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777666652 3345566788899999999999865
No 200
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=31.28 E-value=95 Score=22.65 Aligned_cols=28 Identities=7% Similarity=0.081 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 234 QFLRRREREFEHEMERLAREKIHAQQRL 261 (561)
Q Consensus 234 QkLQreEreLE~EkERLRREneaLQQRL 261 (561)
.+|+.+-.++..++..|+.|+..|+.-|
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4677777777777777777777776544
No 201
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=31.27 E-value=67 Score=23.54 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 243 FEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 243 LE~EkERLRREneaLQQRLeELKqEL 268 (561)
++...|.|-.++..|+.+.+.||.-|
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44445555555555555666665544
No 202
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.91 E-value=76 Score=32.74 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
|+.++.+.++..+.+++|+.+..+|++++..++.|+..
T Consensus 27 i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~ 64 (405)
T 4b4t_J 27 IQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRL 64 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777778888888888888888888888754
No 203
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=30.80 E-value=35 Score=29.00 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 242 EFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 242 eLE~EkERLRREneaLQQRLeELKqEL 268 (561)
+++.+++.|+.+..+|.+++++++.+|
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555544
No 204
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=30.46 E-value=70 Score=27.37 Aligned_cols=6 Identities=33% Similarity=0.789 Sum_probs=3.2
Q ss_pred hhhhcc
Q psy11481 269 SARWEH 274 (561)
Q Consensus 269 sQqw~h 274 (561)
+.+|..
T Consensus 50 p~gw~~ 55 (182)
T 3kqg_A 50 SQGWKY 55 (182)
T ss_dssp TTTCEE
T ss_pred CCCCEE
Confidence 455653
No 205
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=30.39 E-value=1.5e+02 Score=22.19 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
++.|++...+...++..++.+.+.++.++.++...+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~ 43 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLN 43 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555555555555444443
No 206
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=30.35 E-value=1.4e+02 Score=25.36 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 232 YIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 232 YIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
-|+.|+-+..+++.|..+-.++..+.+..|..|+++|..
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 467777788888888888888888888888888888765
No 207
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=30.08 E-value=1.1e+02 Score=25.84 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 236 LRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 236 LQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
|.+-+.++..++++++..+..|..+|.+++.++.+
T Consensus 28 l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ 62 (95)
T 3mov_A 28 IQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQ 62 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555555443
No 208
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=30.06 E-value=91 Score=23.20 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 235 FLRRREREFEHEMERLAREKIHA 257 (561)
Q Consensus 235 kLQreEreLE~EkERLRREneaL 257 (561)
+|+.+...-+.|+.+|+.|+++|
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHH
Confidence 34444444444555555555444
No 209
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=29.66 E-value=1.2e+02 Score=26.50 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 233 IQFLRRREREFEH--------EMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 233 IQkLQreEreLE~--------EkERLRREneaLQQRLeELKqELsQ 270 (561)
.++|+..++.++. -+++-+.++.+|+.+|++||++|..
T Consensus 25 ~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd 70 (96)
T 2ic9_A 25 RQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELAD 70 (96)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777666652 3345556778888899999988864
No 210
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=29.47 E-value=78 Score=23.09 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 235 FLRRREREFEHEMERLAREKIHAQQ 259 (561)
Q Consensus 235 kLQreEreLE~EkERLRREneaLQQ 259 (561)
+|+.+-.++..+...|+.|+..|+.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4666666677777777777766654
No 211
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=29.46 E-value=1.2e+02 Score=28.66 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=39.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11481 220 SSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSARWE 273 (561)
Q Consensus 220 aSKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQqw~ 273 (561)
.+.+.+++.= |-+-.+...++++++++|+.+....+.+-..++++|.+...
T Consensus 120 ~~paE~irel---i~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~ 170 (175)
T 3mud_A 120 ENPAEVIREL---ICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLL 170 (175)
T ss_dssp SCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666554 44456777889999999999999999999999999987544
No 212
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=29.46 E-value=1.2e+02 Score=24.61 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 240 EREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 240 EreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
+.++..++++++..+..|...|.+++.++.
T Consensus 21 e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~ 50 (84)
T 1gk4_A 21 EENFAVEAANYQDTIGRLQDEIQNMKEEMA 50 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 213
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=29.36 E-value=1.1e+02 Score=22.53 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 234 QFLRRREREFEHEMERLAREKIHAQQRL 261 (561)
Q Consensus 234 QkLQreEreLE~EkERLRREneaLQQRL 261 (561)
.+|+.+-.++..++..|+.|+..|+.-|
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4567777777777777777777776544
No 214
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=29.31 E-value=36 Score=33.62 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11481 246 EMERLAREKIHAQQRLALL 264 (561)
Q Consensus 246 EkERLRREneaLQQRLeEL 264 (561)
|++.|+.++++|+.++++|
T Consensus 186 eie~L~~~~~~L~eEi~~L 204 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARL 204 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 215
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=29.17 E-value=1.7e+02 Score=27.09 Aligned_cols=15 Identities=27% Similarity=0.217 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy11481 249 RLAREKIHAQQRLAL 263 (561)
Q Consensus 249 RLRREneaLQQRLeE 263 (561)
.|.+|+.+|++++..
T Consensus 117 aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 117 AVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 216
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=29.13 E-value=1.8e+02 Score=27.21 Aligned_cols=75 Identities=9% Similarity=0.178 Sum_probs=40.5
Q ss_pred hhhHHHHhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 188 VHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIR-YIQFLRRREREFEHEMERLAREKIHAQQRLALLKK 266 (561)
Q Consensus 188 THNaLERKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiD-YIQkLQreEreLE~EkERLRREneaLQQRLeELKq 266 (561)
.|+++=.+=+.-|...++.++..+=. .=-+....|+.++. +=..|....++++.++++|+++...|+..++.|+.
T Consensus 9 ~~~~~l~~Lq~~i~~l~~~~~~~~~e----~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 9 NHHEMLQNLQTVVNELYREDVDYVAD----KILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555533222 11233444544422 23344555566667777777777777777777766
No 217
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=29.08 E-value=1.9e+02 Score=22.21 Aligned_cols=38 Identities=26% Similarity=0.463 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 232 YIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 232 YIQkLQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
.+.+|+.+...++.|.+.|++.+..-+.-++-|++++.
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeia 41 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIA 41 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHH
Confidence 35567777778888888888877766666666666654
No 218
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=28.81 E-value=43 Score=23.34 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 247 MERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 247 kERLRREneaLQQRLeELKqELs 269 (561)
+.+|++++..|+|+++.|+-|+.
T Consensus 2 irrlkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHH
Confidence 34566666666666666665543
No 219
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.79 E-value=88 Score=32.18 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLK 265 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELK 265 (561)
+..|+.++..++.|++.+++|...++.++..+|
T Consensus 58 ~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 58 YELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344445555666666677777777776666665
No 220
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.51 E-value=74 Score=25.96 Aligned_cols=13 Identities=23% Similarity=0.302 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q psy11481 256 HAQQRLALLKKEL 268 (561)
Q Consensus 256 aLQQRLeELKqEL 268 (561)
.|.+++++++.+|
T Consensus 60 ~l~~~l~~~e~eL 72 (89)
T 2lw1_A 60 KVLADMAAAEQEL 72 (89)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 221
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=28.51 E-value=38 Score=28.40 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 235 FLRRREREFEHEMERLAREKIHAQQRLAL 263 (561)
Q Consensus 235 kLQreEreLE~EkERLRREneaLQQRLeE 263 (561)
.|+++.+.++.+++.=+.+...++..+..
T Consensus 24 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 52 (79)
T 3cvf_A 24 ELEHQLRAMERSLEEARAERERARAEVGR 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333333
No 222
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=28.40 E-value=1.1e+02 Score=22.50 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 242 EFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 242 eLE~EkERLRREneaLQQRLeELKqEL 268 (561)
+++..+|+|-.++..|..+.+.|+.-|
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344555566666666666666666544
No 223
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=28.39 E-value=1.1e+02 Score=22.24 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 243 FEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 243 LE~EkERLRREneaLQQRLeELKqEL 268 (561)
++..+|+|-.++..|..+++.|+.-|
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 44445555555555555555555443
No 224
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.33 E-value=65 Score=27.02 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=10.8
Q ss_pred HHHHhHHHHHHHHHHHHhcc
Q psy11481 191 KLEKNRRAHLKECFEILKRQ 210 (561)
Q Consensus 191 aLERKRRd~LKdcFeeLRdl 210 (561)
++|-+=|..+++.|.+-.+-
T Consensus 7 AVeDKLRrrl~E~~~q~qaE 26 (78)
T 3iv1_A 7 AVSDKLRWRMKEEMDRAQAE 26 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 45555555566666554433
No 225
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=28.32 E-value=1.7e+02 Score=22.38 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11481 235 FLRRREREFEHEMERLAREKIHAQQRLALLKKELSAR 271 (561)
Q Consensus 235 kLQreEreLE~EkERLRREneaLQQRLeELKqELsQq 271 (561)
+-++...++++++++|+.+...-+.+...+..+|.+.
T Consensus 9 fAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666666653
No 226
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=28.26 E-value=1.8e+02 Score=23.63 Aligned_cols=73 Identities=14% Similarity=0.057 Sum_probs=41.5
Q ss_pred HHhHHHHHHHHHHHHhcc--CCCCC--CcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 193 EKNRRAHLKECFEILKRQ--VPPAQ--EEKKSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLK 265 (561)
Q Consensus 193 ERKRRd~LKdcFeeLRdl--VPsLs--Dn~KaSKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELK 265 (561)
+.++=....+-++.|.+- |+-+- --.+.++-.++..--+-+..++.+.++++.+++.++.+...|+..|.++-
T Consensus 35 ~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 35 ELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555432 22211 11234444444444445555677777778888888888888887777664
No 227
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=28.09 E-value=1.6e+02 Score=27.81 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLKKE 267 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELKqE 267 (561)
|..|+.+..++..+++.++.+...++.++++++.+
T Consensus 106 i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~ 140 (256)
T 3na7_A 106 SNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL 140 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444433
No 228
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=28.05 E-value=1.2e+02 Score=26.69 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhh
Q psy11481 233 IQFLRRREREFEHEMERL----AREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 233 IQkLQreEreLE~EkERL----RREneaLQQRLeELKqELsQ 270 (561)
|..|+++...+..+++.+ ++.+..|+.++.+|+.+|..
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433 23344455555555555544
No 229
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=27.94 E-value=1.3e+02 Score=25.24 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 234 QFLRRREREFEHEMERLAREKIHAQQRLALLKKE 267 (561)
Q Consensus 234 QkLQreEreLE~EkERLRREneaLQQRLeELKqE 267 (561)
+.++++..+.+.|+..|++++..|...|+.++..
T Consensus 33 k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~ 66 (101)
T 3u1c_A 33 KAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEE 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444333
No 230
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=27.79 E-value=3e+02 Score=29.22 Aligned_cols=25 Identities=8% Similarity=0.154 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 246 EMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 246 EkERLRREneaLQQRLeELKqELsQ 270 (561)
.+..|+...+.|+++|..|+..+.+
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566667777777766654
No 231
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=27.66 E-value=1.1e+02 Score=22.33 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 234 QFLRRREREFEHEMERLAREKIHAQQR 260 (561)
Q Consensus 234 QkLQreEreLE~EkERLRREneaLQQR 260 (561)
.+|+.+-.++..++..|+.|+..|+.-
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456666677777777777777666543
No 232
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=27.56 E-value=2.4e+02 Score=22.64 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 243 FEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 243 LE~EkERLRREneaLQQRLeELKqEL 268 (561)
.+.++..|++.+..|...|+..+..|
T Consensus 39 ~E~ev~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 39 LEDELVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444444443
No 233
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=27.47 E-value=86 Score=27.06 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 243 FEHEMERLAREKIHAQQRLALLK 265 (561)
Q Consensus 243 LE~EkERLRREneaLQQRLeELK 265 (561)
...+++.|+.++..|+.+|++.+
T Consensus 94 e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 94 EKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556667777777777766553
No 234
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=27.46 E-value=67 Score=23.57 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 242 EFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 242 eLE~EkERLRREneaLQQRLeELKqEL 268 (561)
+++...|.|-.++..|+.+++.||.-|
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 344555566666666666666666544
No 235
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=27.41 E-value=1 Score=39.52 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 232 YIQFLRRREREFEHEMERLAREKIHAQQRLALLK 265 (561)
Q Consensus 232 YIQkLQreEreLE~EkERLRREneaLQQRLeELK 265 (561)
.|..|+.+...++.++++|.+|+..|++.++.++
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk 92 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLELDALR 92 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443333
No 236
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=26.91 E-value=39 Score=30.72 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 245 HEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 245 ~EkERLRREneaLQQRLeELKqELs 269 (561)
+|.++|++|.++|++++.+.++++.
T Consensus 2 ~e~~~l~~~~~~l~~~~~~~~~~~~ 26 (340)
T 1got_B 2 SELDQLRQEAEQLKNQIRDARKACA 26 (340)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4667777778888888887777754
No 237
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=26.88 E-value=1.9e+02 Score=24.37 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11481 231 RYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSAR 271 (561)
Q Consensus 231 DYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQq 271 (561)
+.+++|+..--..++++++|+.+....+.+...+.++|.+.
T Consensus 30 ~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqT 70 (77)
T 3mtu_E 30 EALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQT 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44556666656666667777666666666666666666553
No 238
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=26.76 E-value=1e+02 Score=32.60 Aligned_cols=34 Identities=9% Similarity=0.079 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy11481 242 EFEHEMERLAREKIHAQQRLALLKKELSARWEHI 275 (561)
Q Consensus 242 eLE~EkERLRREneaLQQRLeELKqELsQqw~hI 275 (561)
++.+++.+|+.++.+|.+++.+++.++.+-...|
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~i 153 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYLRALRL 153 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5556667777777777777777777776644433
No 239
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.71 E-value=1e+02 Score=31.68 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 236 LRRREREFEHEMERLAREKIHAQQRLALLKKE 267 (561)
Q Consensus 236 LQreEreLE~EkERLRREneaLQQRLeELKqE 267 (561)
|+.+.+++++++++|++++++++.++++++.+
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444433333
No 240
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=26.64 E-value=85 Score=32.54 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11481 242 EFEHEMERLAREKIHAQQRLALLKKELSARWE 273 (561)
Q Consensus 242 eLE~EkERLRREneaLQQRLeELKqELsQqw~ 273 (561)
++.+++.+|+.++.+|.+++.+++.++.+-..
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777665444
No 241
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=26.32 E-value=1.3e+02 Score=26.07 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 248 ERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 248 ERLRREneaLQQRLeELKqELsQ 270 (561)
-+|+|+.+.|..+|+.++.+|.+
T Consensus 52 aKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 52 TKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888888765
No 242
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=26.29 E-value=33 Score=30.52 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11481 241 REFEHEMERLAREKIHAQQRLA 262 (561)
Q Consensus 241 reLE~EkERLRREneaLQQRLe 262 (561)
.+|.+|+.+|+-||.+|++++.
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4577788888888888877774
No 243
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=26.28 E-value=1.4e+02 Score=25.45 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 244 EHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 244 E~EkERLRREneaLQQRLeELKqEL 268 (561)
+.|++.-+++++.|+.+|+..++.+
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i 74 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSI 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666555554
No 244
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=26.21 E-value=1.2e+02 Score=22.24 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 234 QFLRRREREFEHEMERLAREKIHAQQRL 261 (561)
Q Consensus 234 QkLQreEreLE~EkERLRREneaLQQRL 261 (561)
.+|+.+-.++..++..|+.|+..|+.-+
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4677777777777777877777776554
No 245
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=25.92 E-value=1.9e+02 Score=27.18 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 227 HSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 227 rKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
.-|..+-.-|+++...|..|..++.++..++++++++.-++..
T Consensus 27 ~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~ 69 (217)
T 3aon_A 27 TTATRGHKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTAM 69 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778889999999999999999999999999988766643
No 246
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.66 E-value=94 Score=25.34 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 246 EMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 246 EkERLRREneaLQQRLeELKqELs 269 (561)
|++.|..++..|.+++++|+.+|.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555555554
No 247
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.65 E-value=1e+02 Score=32.61 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy11481 241 REFEHEMERLAREKIHAQQRLALLKKELSARWEHI 275 (561)
Q Consensus 241 reLE~EkERLRREneaLQQRLeELKqELsQqw~hI 275 (561)
.++.+|+.+|+.++.+|..++.+++.++.+-...|
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~i 108 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQV 108 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34666777777888888888888888776644443
No 248
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=25.40 E-value=1.3e+02 Score=28.96 Aligned_cols=68 Identities=13% Similarity=0.033 Sum_probs=41.8
Q ss_pred HHhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 193 EKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKE 267 (561)
Q Consensus 193 ERKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqE 267 (561)
+.+|=+.+...+..+.+.+.......+. ..+. -+..+++.-.++..+++.|.++..+|+.++++|+..
T Consensus 61 ~~~~~~~~~~k~~~~~~~L~~~~~~~~~---~~~~----~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 61 ELKRWEAVVSQAEQSLTVVGLATVPSSK---PFTG----SLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCSS---CCCS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhccccccccc---CCcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445556666777777777663321111 1111 255566666677777778888888888888877776
No 249
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=25.37 E-value=1.3e+02 Score=27.96 Aligned_cols=40 Identities=8% Similarity=-0.034 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 230 IRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 230 iDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
...|+.|+.+..+.++.+++-+++.++|..+...+|.-..
T Consensus 4 ~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~ 43 (155)
T 2aze_A 4 AQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQ 43 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888888777777766666666666666665443
No 250
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=25.33 E-value=46 Score=27.44 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 247 MERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 247 kERLRREneaLQQRLeELKqELs 269 (561)
+|+|+++..+|+.+|..++..++
T Consensus 4 ~e~l~~~~~~l~~~l~~~~~~~~ 26 (148)
T 3pbf_A 4 DEELQTELYEIKHQILQTMGVLS 26 (148)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777778888888877763
No 251
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.30 E-value=89 Score=21.64 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11481 242 EFEHEMERLAREKIHAQQRLA 262 (561)
Q Consensus 242 eLE~EkERLRREneaLQQRLe 262 (561)
++-.|+|.|+++.+.|+++|.
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455677777777777877764
No 252
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=25.26 E-value=58 Score=32.80 Aligned_cols=26 Identities=4% Similarity=0.197 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 245 HEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 245 ~EkERLRREneaLQQRLeELKqELsQ 270 (561)
.+++.|+.+.+.|+++|.+|+.++.+
T Consensus 28 ~~I~~Lq~~le~L~~KI~~LE~~v~~ 53 (323)
T 1lwu_B 28 GSLRSMKSVLEHLRAKMQRMEEAIKT 53 (323)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777777766644
No 253
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=25.22 E-value=20 Score=26.03 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 232 YIQFLRRREREFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 232 YIQkLQreEreLE~EkERLRREneaLQQRLeELKqEL 268 (561)
.|..|+++-+.+ +.+.+.++.+++.++++|
T Consensus 5 ~i~avKkKiq~l-------q~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 5 SLEAVRRKIRSL-------QEQNYHLENEVARLKKLV 34 (37)
T ss_dssp -CHHHHHHHHHH-------HHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 344555554444 444444444555555443
No 254
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=25.21 E-value=2.1e+02 Score=23.34 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 248 ERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 248 ERLRREneaLQQRLeELKqELsQ 270 (561)
-+|+|+.+.|..+|+.+.+++..
T Consensus 35 aKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 35 TKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 46888888888888888888765
No 255
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=25.17 E-value=65 Score=27.56 Aligned_cols=25 Identities=20% Similarity=0.104 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 246 EMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 246 EkERLRREneaLQQRLeELKqELsQ 270 (561)
.+..|+.++++|+.+|+.+++.|.+
T Consensus 17 ~~~~l~~~~~~l~~~l~~~~~~l~~ 41 (182)
T 3kqg_A 17 KASALNTKIRALQGSLENMSKLLKR 41 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666665543
No 256
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.16 E-value=1.4e+02 Score=29.17 Aligned_cols=31 Identities=13% Similarity=0.182 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 238 RREREFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 238 reEreLE~EkERLRREneaLQQRLeELKqEL 268 (561)
+++++|..+++.|+.|+..|++++++|+.-.
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777776544
No 257
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=24.99 E-value=1.5e+02 Score=22.99 Aligned_cols=38 Identities=5% Similarity=0.038 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
|.+|-.+-..|-.++.+|..++..|+..+..-|.|..+
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~R 43 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAAR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666667777777777777777777666666543
No 258
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=24.87 E-value=70 Score=27.53 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-Hhhhhcc
Q psy11481 245 HEMERLAREKIHAQQRLALLKKE-LSARWEH 274 (561)
Q Consensus 245 ~EkERLRREneaLQQRLeELKqE-LsQqw~h 274 (561)
.+++.|+.+...|+++|..|++. ...+|..
T Consensus 23 ~~l~~L~~~~~~L~~~l~~l~~~~~~~~~~~ 53 (168)
T 1buu_A 23 VKLANMEAEINTLKSKLELTNKLHAFSMGKK 53 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCeEE
Confidence 34555556666666666666654 3444553
No 259
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=24.43 E-value=1.5e+02 Score=26.16 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 226 LHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLAL 263 (561)
Q Consensus 226 LrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeE 263 (561)
|.++-.-|..|.++..++...++.|++|.+..=.+|..
T Consensus 13 L~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 13 LTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456666666666666666666665544444433
No 260
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=24.40 E-value=1.2e+02 Score=30.94 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
|+.|++...+++++++....++.+|.+++..||-+|-+
T Consensus 214 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~q 251 (373)
T 3hhm_B 214 ISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQ 251 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 55566666777777777777777777777777766643
No 261
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=23.92 E-value=1.4e+02 Score=21.91 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 242 EFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 242 eLE~EkERLRREneaLQQRLeELKqEL 268 (561)
+++..+|.|-.++..|..+++.|+.-|
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 344455555566666666666666544
No 262
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=23.79 E-value=2.3e+02 Score=22.25 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 232 YIQFLRRREREFEHEMERLAREKIHAQQRLALLK 265 (561)
Q Consensus 232 YIQkLQreEreLE~EkERLRREneaLQQRLeELK 265 (561)
....|+++..++++++++|++....|+..++.++
T Consensus 40 ~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 73 (99)
T 1q08_A 40 SKGIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777777777777777776666666666554
No 263
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=23.69 E-value=83 Score=26.57 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11481 236 LRRREREFEHEMERLAREKIHA 257 (561)
Q Consensus 236 LQreEreLE~EkERLRREneaL 257 (561)
|+++.++++..+.+|+.|+.-|
T Consensus 20 LKe~I~EL~e~~~qLE~EN~~L 41 (78)
T 1dip_A 20 LKEQIRELVEKNSQLERENTLL 41 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 264
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=23.50 E-value=2.2e+02 Score=27.16 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 222 NLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 222 KAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqEL 268 (561)
....|..++..+........+.+...+++++.+++|+.+++.++.++
T Consensus 110 ~~~~l~~~i~~~~~~~~l~~e~~~~~~~L~~~~~~L~~~~~~l~~~~ 156 (394)
T 3eq2_A 110 DLAVLEHSVRRALDRAYLRVENQRYRDKLEAANRELQASLNLLQEDQ 156 (394)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 34555555554433333333333334445555555555555555543
No 265
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=23.49 E-value=1.2e+02 Score=24.86 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 247 MERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 247 kERLRREneaLQQRLeELKqELsQ 270 (561)
+.+|+.+.+.-...+++|+.+|.+
T Consensus 27 I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 27 IKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555555544
No 266
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=23.40 E-value=1.9e+02 Score=23.70 Aligned_cols=29 Identities=10% Similarity=0.110 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 240 EREFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 240 EreLE~EkERLRREneaLQQRLeELKqEL 268 (561)
-.++-..+-+.++++..|++++..|..++
T Consensus 30 IeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 30 LTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555444
No 267
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.24 E-value=1.6e+02 Score=27.71 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 230 IRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 230 iDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
-+-+..++.+...++.++.++..++..++++++..+.++..
T Consensus 45 ~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 45 NKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33455555556666666666677777777777777766654
No 268
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=22.92 E-value=4.2e+02 Score=27.75 Aligned_cols=73 Identities=12% Similarity=0.159 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhccCCCCCCcCCcchHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 197 RAHLKECFEILKRQVPPAQEEKKSSNLS-ILHS---AIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 197 Rd~LKdcFeeLRdlVPsLsDn~KaSKAs-ILrK---AiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
-...++.+..|++.... .+..+..+.. +-++ -++-+..++......+.+++.|+.......++|.+|+..+.+
T Consensus 54 Ts~~~~~v~~ik~~~~~-~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~ 130 (411)
T 3ghg_C 54 TSEVKQLIKAIQLTYNP-DESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQ 130 (411)
T ss_dssp HHHHHHHHHHHHHHHCT-TTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcc-ccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666665544 2222332222 2222 234444455555555677778888888888888888877654
No 269
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=22.80 E-value=1.7e+02 Score=25.33 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 243 FEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 243 LE~EkERLRREneaLQQRLeELKqELs 269 (561)
.+.....|..+...|.+.+..|+.++.
T Consensus 95 eee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 95 EEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555555543
No 270
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=22.73 E-value=1.3e+02 Score=31.89 Aligned_cols=37 Identities=14% Similarity=0.001 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 230 IRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKK 266 (561)
Q Consensus 230 iDYIQkLQreEreLE~EkERLRREneaLQQRLeELKq 266 (561)
++-|..|.++.++++.+.++|+.+..++.+++.++++
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667888899999999999999999999999888776
No 271
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=22.73 E-value=1.3e+02 Score=22.64 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 247 MERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 247 kERLRREneaLQQRLeELKqELsQ 270 (561)
+-.|...++.|.+|+..|+.+|..
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~ 34 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLET 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345678889999999999998864
No 272
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=22.69 E-value=1.6e+02 Score=27.66 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 238 RREREFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 238 reEreLE~EkERLRREneaLQQRLeELKqEL 268 (561)
...++++.....|+.....|++.+..|+.+|
T Consensus 48 ~~~rELq~~~~~L~~~k~~Leke~~~LQa~L 78 (168)
T 3o0z_A 48 SLNRELQERNRILENSKSQTDKDYYQLQAIL 78 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444333
No 273
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=22.54 E-value=1.4e+02 Score=25.65 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhccc
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLKKE-LSARWEHI 275 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELKqE-LsQqw~hI 275 (561)
++.|+++..+|+.+-+.|-+.+..++++|..+... ..+.|.++
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~~n~~~aYV 51 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYV 51 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccee
Confidence 44555555555555555556666666666666644 23335543
No 274
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.54 E-value=1.6e+02 Score=28.02 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 234 QFLRRREREFEHEMERLAREKIHAQQRLA 262 (561)
Q Consensus 234 QkLQreEreLE~EkERLRREneaLQQRLe 262 (561)
..++.+++.++....+|+.|++.++.++.
T Consensus 52 ~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~ 80 (189)
T 2v71_A 52 VQAEQRNRDLQADNQRLKYEVEALKEKLE 80 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444333333333
No 275
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=22.45 E-value=2.8e+02 Score=21.61 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
|.+|++-+..+-..+.+|+..-..+.|+++.|++-|-+
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666655544
No 276
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=22.30 E-value=68 Score=32.38 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
|..++.+.+.++..++.|+.++..|++++.+|+..+..
T Consensus 13 Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~ 50 (319)
T 1fzc_C 13 ILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 50 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred hhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33345555555566667777777788888888776543
No 277
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=22.24 E-value=2.6e+02 Score=24.41 Aligned_cols=56 Identities=16% Similarity=0.303 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy11481 221 SNLSILHSAIRYIQF----LRRREREFEHEMERLAREKIHAQQRLALLKKELSARWEHID 276 (561)
Q Consensus 221 SKAsILrKAiDYIQk----LQreEreLE~EkERLRREneaLQQRLeELKqELsQqw~hID 276 (561)
+|.+-|..+.+-=+. |-++.++++.-...|+.|+.+-.++|.+|+..+..-..++|
T Consensus 4 n~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~ 63 (101)
T 1d7m_A 4 NRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLE 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 456666666654333 33344555555666777777777888888877766555555
No 278
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=22.20 E-value=1.7e+02 Score=28.63 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=19.6
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHhccCCC
Q psy11481 186 REVHNKLEKNRRAHLKECFEILKRQVPP 213 (561)
Q Consensus 186 RaTHNaLERKRRd~LKdcFeeLRdlVPs 213 (561)
|+..-.=-|.||+.|-+.+..|+.-=|.
T Consensus 102 ~E~svqp~R~~R~~l~~~I~kLk~k~P~ 129 (234)
T 3plt_A 102 IEASVQPSRDRKEKITDEIAHLKYKDPQ 129 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhccCCC
Confidence 3333444566888999999999876554
No 279
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=22.17 E-value=3.1e+02 Score=25.49 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 225 ILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 225 ILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeELKqEL 268 (561)
.|..-..-+.+|++++.-.+.|+.+|+.|...+++.++.....|
T Consensus 40 ML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~L 83 (167)
T 4gkw_A 40 MLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLL 83 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45555555777888888788888888888888887777655554
No 280
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=22.15 E-value=1.5e+02 Score=22.93 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 243 FEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 243 LE~EkERLRREneaLQQRLeELKqEL 268 (561)
....++.|.++.+++-+||+.|.+++
T Consensus 21 v~~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 21 VEELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556667777777888888887664
No 281
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.15 E-value=77 Score=29.44 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=38.6
Q ss_pred CCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh
Q psy11481 214 AQEEKKSSNLSILHSAIRYIQFLRRREREFEHEMERLA-------REKIHAQQRLALLKKELSA 270 (561)
Q Consensus 214 LsDn~KaSKAsILrKAiDYIQkLQreEreLE~EkERLR-------REneaLQQRLeELKqELsQ 270 (561)
|.++.+.-=-.|.++..+-++.|+++.+....|++.|- .++++|.+++.+|+.++..
T Consensus 68 LT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 68 LTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44433333344556666667777777777777777764 5778888888888888876
No 282
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=21.87 E-value=31 Score=29.40 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 247 MERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 247 kERLRREneaLQQRLeELKqELsQ 270 (561)
+-|||++++.|..++++|+.++..
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357888888888899988888764
No 283
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=21.82 E-value=1.4e+02 Score=27.23 Aligned_cols=29 Identities=0% Similarity=-0.118 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 241 REFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 241 reLE~EkERLRREneaLQQRLeELKqELs 269 (561)
.-+++++++|++++.+|++.++.|+..+.
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (278)
T 1r8e_A 82 AFYTEQERQIREKLDFLSALEQTISLVKK 110 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777776654
No 284
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=21.72 E-value=2.7e+02 Score=25.33 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11481 226 LHSAIRYIQFLRRREREFEHEM--------ERLAREKIHAQQRLALLKKELSARWE 273 (561)
Q Consensus 226 LrKAiDYIQkLQreEreLE~Ek--------ERLRREneaLQQRLeELKqELsQqw~ 273 (561)
+..|+.-|..|+++..+++.++ ++.+.+...|+.+++.|+..|.. |.
T Consensus 18 ~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~-y~ 72 (171)
T 2p2u_A 18 AEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVAT-FA 72 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 5566666777777766655433 34556667777888888888776 66
No 285
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=21.66 E-value=3.9e+02 Score=30.51 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 247 MERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 247 kERLRREneaLQQRLeELKqELsQ 270 (561)
+++|+.+...|++++++++.++.+
T Consensus 915 l~~l~~~~~~Le~~l~ele~elee 938 (1184)
T 1i84_S 915 RVRLAAKKQELEEILHEMEARIEE 938 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555666666665543
No 286
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=21.65 E-value=2.7e+02 Score=25.86 Aligned_cols=28 Identities=43% Similarity=0.439 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---Hhhhhc
Q psy11481 246 EMERLAREKIHAQQRLALLKKE---LSARWE 273 (561)
Q Consensus 246 EkERLRREneaLQQRLeELKqE---LsQqw~ 273 (561)
|+..|+-+...+.+++..|+.| |-++||
T Consensus 104 El~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 104 ALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455555544 233465
No 287
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=21.61 E-value=79 Score=27.35 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 245 HEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 245 ~EkERLRREneaLQQRLeELKqELsQ 270 (561)
..++.|+++..+...|.++|+..|.+
T Consensus 60 ~~k~~lr~K~~eYl~RAE~LK~~l~~ 85 (117)
T 2cpt_A 60 KAKQSIRAKCTEYLDRAEKLKEYLKN 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34677888899999999999988865
No 288
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=21.60 E-value=1.8e+02 Score=21.34 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 234 QFLRRREREFEHEMERLAREKIHAQQRL 261 (561)
Q Consensus 234 QkLQreEreLE~EkERLRREneaLQQRL 261 (561)
.+|+.+-.++..++..|+.|+..|+.-|
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4566777777777777777777666544
No 289
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=21.49 E-value=3.2e+02 Score=24.12 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 238 RREREFEHEMERLAREKIHAQQRL 261 (561)
Q Consensus 238 reEreLE~EkERLRREneaLQQRL 261 (561)
.+.++++.|+++|++|+..|.++-
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666555443
No 290
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=21.31 E-value=1.2e+02 Score=29.14 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 223 LSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQR 260 (561)
Q Consensus 223 AsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQR 260 (561)
+.+++ ++|-+.-.+-.+++.+.++|++||+.|++.
T Consensus 149 aE~ir---ELi~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 149 AEVIR---ELICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44453 455555666667777777777777766543
No 291
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=21.27 E-value=1.8e+02 Score=22.77 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 241 REFEHEMERLAREKIHAQQRLALLKKE 267 (561)
Q Consensus 241 reLE~EkERLRREneaLQQRLeELKqE 267 (561)
=+.+.++=+++||.++.+++|..+++.
T Consensus 11 i~Aqe~iLr~ErELEeAr~~La~iR~~ 37 (50)
T 2qdq_A 11 IAAQEEMLRKERELEEARKKLAQIRQQ 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677788888888999888865
No 292
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=21.19 E-value=2.7e+02 Score=24.74 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccc
Q psy11481 250 LAREKIHAQQRLALLKKELSARWEHIDFNT 279 (561)
Q Consensus 250 LRREneaLQQRLeELKqELsQqw~hIDfSt 279 (561)
.++++..+..|+.+|+++|.. ..-+|.+.
T Consensus 51 ak~~q~~~e~ri~~Le~~L~~-a~vid~~~ 79 (158)
T 1grj_A 51 AREQQGFCEGRIKDIEAKLSN-AQVIDVTK 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-EEEECGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CeecCccc
Confidence 456667788899999999987 55555544
No 293
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=21.05 E-value=2.3e+02 Score=23.54 Aligned_cols=25 Identities=8% Similarity=0.255 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHA 257 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaL 257 (561)
|+..++...+++.-++++.-|.+.+
T Consensus 36 i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 36 LKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444444444444444444444444
No 294
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=21.03 E-value=2.9e+02 Score=22.17 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLK 265 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELK 265 (561)
.+.|+++...+..+++.|+.+...+..-+++|.
T Consensus 10 f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~ 42 (107)
T 1fxk_A 10 FQQLQQQAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544444443
No 295
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=20.98 E-value=2.9e+02 Score=24.37 Aligned_cols=8 Identities=38% Similarity=0.277 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q psy11481 200 LKECFEIL 207 (561)
Q Consensus 200 LKdcFeeL 207 (561)
|+.....|
T Consensus 34 Lk~e~e~l 41 (155)
T 2oto_A 34 LKARLENA 41 (155)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 296
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=20.89 E-value=2.5e+02 Score=27.40 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=15.9
Q ss_pred hhhhHHHHhHHHHHHHHHHHHhc
Q psy11481 187 EVHNKLEKNRRAHLKECFEILKR 209 (561)
Q Consensus 187 aTHNaLERKRRd~LKdcFeeLRd 209 (561)
..-++++..||......|+-+..
T Consensus 162 ea~~~l~~~rk~f~~~~ldy~~~ 184 (385)
T 2q13_A 162 EVTEDVYTSRKKQHQTMMHYFCA 184 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477888888877777665553
No 297
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=20.85 E-value=2.9e+02 Score=25.28 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 232 YIQFLRRREREFEHEMERLAREKIHAQQRLALLKKE 267 (561)
Q Consensus 232 YIQkLQreEreLE~EkERLRREneaLQQRLeELKqE 267 (561)
|+..+++..++++.++++++++.......++..|+.
T Consensus 110 ~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~ 145 (305)
T 2efl_A 110 YVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRR 145 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334344444444444444444444444444433
No 298
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=20.83 E-value=1.4e+02 Score=25.17 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 248 ERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 248 ERLRREneaLQQRLeELKqELsQ 270 (561)
+.+.++.++|.+++++|++++.+
T Consensus 114 ~~l~~~~~~l~~~l~~le~~~~~ 136 (139)
T 3eff_K 114 EAYTRTTRALHERFDRLERMLDD 136 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556667888888888877655
No 299
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=20.77 E-value=3.6e+02 Score=26.91 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 241 REFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 241 reLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
.++..|...+..+...|++|+..|+..+.+
T Consensus 53 ~eL~~e~~~~~~R~~~L~~RI~~L~~~v~~ 82 (279)
T 3p8c_D 53 GELFNEAHSFSFRVNSLQERVDRLSVSVTQ 82 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445556666667777777777777777754
No 300
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=20.75 E-value=1.1e+02 Score=24.50 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 245 HEMERLAREKIHAQQRLALLKKE 267 (561)
Q Consensus 245 ~EkERLRREneaLQQRLeELKqE 267 (561)
.-+..|++++..|+.++++|+++
T Consensus 57 ~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 57 EYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44677888888888888888765
No 301
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=20.68 E-value=1.3e+02 Score=22.12 Aligned_cols=28 Identities=11% Similarity=0.137 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 234 QFLRRREREFEHEMERLAREKIHAQQRL 261 (561)
Q Consensus 234 QkLQreEreLE~EkERLRREneaLQQRL 261 (561)
.+|+.+-.++..+...|+.|+..|+.-|
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 4567777777777777777777766543
No 302
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.51 E-value=1.2e+02 Score=23.26 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 239 REREFEHEMERLAREKIHAQQRLALLK 265 (561)
Q Consensus 239 eEreLE~EkERLRREneaLQQRLeELK 265 (561)
+...++.|++.|+++..+|+.+|..|+
T Consensus 21 elaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677788888888888888888775
No 303
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=20.51 E-value=1.7e+02 Score=24.17 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 235 FLRRREREFEHEMERLAREKIHAQQRLALLK 265 (561)
Q Consensus 235 kLQreEreLE~EkERLRREneaLQQRLeELK 265 (561)
.|+++-..+..+..+|.-|...++..++.++
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk 34 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLR 34 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443433333
No 304
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.49 E-value=2e+02 Score=30.51 Aligned_cols=38 Identities=11% Similarity=0.165 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELKqELsQ 270 (561)
+..|..+-+++..+++.|+.+..+++.++.++-..++.
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN 110 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGN 110 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44566666777777777777777777777776666654
No 305
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=20.47 E-value=1e+02 Score=21.31 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 242 EFEHEMERLAREKIHAQQRLALLK 265 (561)
Q Consensus 242 eLE~EkERLRREneaLQQRLeELK 265 (561)
++..|.-+|+-|.++|+.+...|+
T Consensus 4 qlkdevgelkgevralkdevkdlk 27 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDLK 27 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHhHHHHHHHHHhccC
No 306
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.46 E-value=2e+02 Score=24.73 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 244 EHEMERLAREKIHAQQRLALLKKE 267 (561)
Q Consensus 244 E~EkERLRREneaLQQRLeELKqE 267 (561)
..++++++..+..|...|.+++.+
T Consensus 74 ~~~l~~~q~~i~~lE~eL~~~r~e 97 (129)
T 3tnu_B 74 ELALKDARNKLAELEEALQKAKQD 97 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333333333333333333333333
No 307
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=20.45 E-value=1.6e+02 Score=25.84 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRLALLK 265 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRLeELK 265 (561)
...|+++..++++++++|++-.+.|+..++.++
T Consensus 82 ~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~ 114 (146)
T 3hh0_A 82 LRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQ 114 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334555555555555555555555544444443
No 308
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=20.31 E-value=1.9e+02 Score=27.06 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11481 232 YIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELS 269 (561)
Q Consensus 232 YIQkLQreEreLE~EkERLRREneaLQQRLeELKqELs 269 (561)
.+..|+....+++++++....++..|.+++..|+-+|.
T Consensus 104 RL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~ 141 (170)
T 3l4q_C 104 RIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLM 141 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 34555555666666666655556566666655555543
No 309
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=20.21 E-value=1.3e+02 Score=22.09 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 233 IQFLRRREREFEHEMERLAREKIHAQQRL 261 (561)
Q Consensus 233 IQkLQreEreLE~EkERLRREneaLQQRL 261 (561)
++.|-.+-..|...+..|++++..|..++
T Consensus 8 mq~LNdrlAsyidkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 8 LQELNDRFANYIDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555555554444
No 310
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=20.09 E-value=1.5e+02 Score=24.21 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481 241 REFEHEMERLAREKIHAQQRLALLKKEL 268 (561)
Q Consensus 241 reLE~EkERLRREneaLQQRLeELKqEL 268 (561)
++++.++++-..|+.+|+.+|..++.-+
T Consensus 28 ~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 28 KELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444455555555555555443
Done!