RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11481
(561 letters)
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 84.2 bits (208), Expect = 1e-20
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 186 REVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEH 245
R HN++EKNRRAHL+ E LK VP + + + LS+L A +I+ L +R+ H
Sbjct: 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61
Query: 246 EMERLAREKIHAQQRL 261
++++L RE+ H +++L
Sbjct: 62 QIDQLQREQRHLKRQL 77
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 80.3 bits (198), Expect = 3e-19
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 186 REVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEH 245
R HN LE+ RR LK F L+ Q+P + +K+ + IL A YI ++ E++
Sbjct: 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS 66
Query: 246 EMERLAREKIHAQQRLALLK 265
E + L + + + +L L
Sbjct: 67 EEDLLRKRREQLKHKLEQLG 86
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 77.6 bits (191), Expect = 2e-18
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 186 REVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEH 245
R HN LE+ RR H+K+ F L+ VP + +K+S IL A YIQ++RR+ +
Sbjct: 3 RAHHNALERKRRDHIKDSFHSLRDSVPS-LQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61
Query: 246 EMERLAREKIHAQQRLALLK 265
+++ L R+ +Q++ L
Sbjct: 62 DIDDLKRQNALLEQQVRALG 81
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 64.6 bits (157), Expect = 9e-14
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 186 REVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEH 245
R HN +EK R+ + + LK V + K + ++L AI YI+FL+ ++ +
Sbjct: 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTE--AKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64
Query: 246 EMERLAREKIHAQQRL 261
E L R +H + L
Sbjct: 65 ENLSL-RTAVHKSKSL 79
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 62.5 bits (152), Expect = 3e-13
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 186 REVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLS---ILHSAIRYIQFLRRRER 241
R HN++E+ RR + L + +P + E S S IL A YIQ LR+
Sbjct: 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 68
Score = 60.3 bits (146), Expect = 2e-12
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 176 IKKRSGISGIREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQF 235
+K+++ + R+ E+ R + + E FE LKR ++ + IL +AIRYI+
Sbjct: 3 LKRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEG 61
Query: 236 LRRRERE 242
L+ R+
Sbjct: 62 LQALLRD 68
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 63
Score = 56.8 bits (137), Expect = 3e-11
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 186 REVHNKLEKNRRAHLKECFEILKRQVPPAQEE----KKSSNLSILHSAIRYIQFLRRR 239
RE H E+ RR L L +P ++ S + + +A RYI+ L++
Sbjct: 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQN 60
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 51.3 bits (123), Expect = 2e-09
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 197 RAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIH 256
R+ + + LK V + K +L AI YI++L++ + E L +
Sbjct: 1 RSSINDKIIELKDLVMG--TDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLA--N 56
Query: 257 AQQRL 261
+ +L
Sbjct: 57 QKNKL 61
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 31.3 bits (70), Expect = 0.31
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 21/77 (27%)
Query: 185 IREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFE 244
++++ K+E +R LKE L ++ QE+++ + F+
Sbjct: 245 LKQLTEKMENDRVQLLKEQERTLALKL---QEQEQ------------------LLKEGFQ 283
Query: 245 HEMERLAREKIHAQQRL 261
E + E Q ++
Sbjct: 284 KESRIMKNEIQDLQTKM 300
Score = 27.8 bits (61), Expect = 3.3
Identities = 12/89 (13%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 185 IREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFE 244
E K ++ ++++++ QE K + + ++ ++ R
Sbjct: 212 KAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKL 271
Query: 245 HEMERLAREKIHAQQR-----LALLKKEL 268
E E+L +E + R + L+ ++
Sbjct: 272 QEQEQLLKEGFQKESRIMKNEIQDLQTKM 300
>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId:
10760]}
Length = 882
Score = 30.9 bits (69), Expect = 0.52
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 8/60 (13%)
Query: 219 KSSNLSILHSAI--------RYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSA 270
++ S + A Y + L R + EHE + + L E++
Sbjct: 6 AKNDFSDIELAAIPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVAD 65
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 28.0 bits (62), Expect = 1.4
Identities = 12/102 (11%), Positives = 34/102 (33%), Gaps = 19/102 (18%)
Query: 193 EKNRRAHLKECFEILKRQVPPAQE-----EKKSSNLSILHSAIRYIQFLRRREREFEHEM 247
E R L+ E +++ + E+ +++ ++ L R+ FE ++
Sbjct: 5 EIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDL 64
Query: 248 --------------ERLAREKIHAQQRLALLKKELSARWEHI 275
+ L H + +++ +W+ +
Sbjct: 65 AAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRL 106
>d1zata2 d.335.1.1 (A:217-338) L,D-transpeptidase, pre-catalytic
domain {Enterococcus faecium [TaxId: 1352]}
Length = 122
Score = 26.6 bits (59), Expect = 4.4
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 302 SYGKERSYMDEDGGLVIVTNGSVG 325
+ + + G V V G+
Sbjct: 62 TSTNDTKFKSTKRGEVTVPVGTYS 85
>d1n3ka_ a.77.1.4 (A:) PEA-15 (phosphoprotein enriched in astrocytes
15 kDa) {Chinese hamster (Cricetulus griseus) [TaxId:
10029]}
Length = 130
Score = 26.4 bits (58), Expect = 5.6
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 13/69 (18%)
Query: 187 EVHNKLEKNRRAHLKECFEILKRQ-------------VPPAQEEKKSSNLSILHSAIRYI 233
E HNKL+K+ ++++ FEI +R + ++E++ + L+ + SA +Y
Sbjct: 50 ESHNKLDKDNLSYIEHIFEISRRPDLLTMVVDYRTRVLKISEEDELDTKLTRIPSAKKYK 109
Query: 234 QFLRRRERE 242
+R+ E
Sbjct: 110 DIIRQPSEE 118
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.126 0.353
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,920,021
Number of extensions: 87477
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 15
Length of query: 561
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 471
Effective length of database: 1,171,896
Effective search space: 551963016
Effective search space used: 551963016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.5 bits)