BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11482
         (172 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3F4M|A Chain A, Crystal Structure Of Tipe2
          Length = 161

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 12/136 (8%)

Query: 30  KSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEXXXXXXXXXXXXXX 89
           +S+  ++ID+ S  +LD LYRV K Y            T+++ Q++              
Sbjct: 1   RSVAHLFIDETSSEVLDELYRVSKEY------------THSRPQAQRVIKDLIKVAIKVA 48

Query: 90  XXVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLL 149
              +N  F  +EL      + K     M+ +SF EVDF+++AA L   LT  R  L  L+
Sbjct: 49  VLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLELV 108

Query: 150 QRHLTSKNLTNLDNLY 165
           + HLT K+   + +++
Sbjct: 109 EHHLTPKSHGRIRHVF 124


>pdb|2A7M|A Chain A, 1.6 Angstrom Resolution Structure Of The Quorum-Quenching
           N-Acyl Homoserine Lactone Hydrolase Of Bacillus
           Thuringiensis
          Length = 250

 Score = 30.8 bits (68), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 19  VQKKLASKMSNKSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNK 71
           V+ ++  KM+ +  + + I  R G   D+L  +I +++ F H  GNG  TN  
Sbjct: 69  VEGQILPKMTEEDRI-VNILKRVGYEPDDLLYIISSHLHFDHAGGNGAFTNTP 120


>pdb|2BR6|A Chain A, Crystal Structure Of Quorum-Quenching N-Acyl Homoserine
           Lactone Lactonase
 pdb|2BTN|A Chain A, Crystal Structure And Catalytic Mechanism Of The Quorum-
           Quenching N-Acyl Homoserine Lactone Hydrolase
          Length = 252

 Score = 30.8 bits (68), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 19  VQKKLASKMSNKSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNK 71
           V+ ++  KM+ +  + + I  R G   D+L  +I +++ F H  GNG  TN  
Sbjct: 71  VEGQILPKMTEEDRI-VNILKRVGYEPDDLLYIISSHLHFDHAGGNGAFTNTP 122


>pdb|3DHA|A Chain A, An Ultral High Resolution Structure Of N-Acyl Homoserine
           Lactone Hydrolase With The Product
           N-Hexanoyl-L-Homoserine Bound At An Alternative Site
 pdb|3DHB|A Chain A, 1.4 Angstrom Structure Of N-Acyl Homoserine Lactone
           Hydrolase With The Product N-Hexanoyl-L-Homoserine Bound
           At The Catalytic Metal Center
 pdb|3DHC|A Chain A, 1.3 Angstrom Structure Of N-Acyl Homoserine Lactone
           Hydrolase With The Product N-Hexanoyl-L-Homocysteine
           Bound To The Catalytic Metal Center
          Length = 254

 Score = 30.8 bits (68), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 19  VQKKLASKMSNKSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNK 71
           V+ ++  KM+ +  + + I  R G   D+L  +I +++ F H  GNG  TN  
Sbjct: 73  VEGQILPKMTEEDRI-VNILKRVGYEPDDLLYIISSHLHFDHAGGNGAFTNTP 124


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.130    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,911,367
Number of Sequences: 62578
Number of extensions: 115820
Number of successful extensions: 194
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 13
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)