Query psy11482
Match_columns 172
No_of_seqs 79 out of 81
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 19:34:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05527 DUF758: Domain of unk 100.0 3.6E-74 7.9E-79 474.0 13.5 152 7-170 1-152 (186)
2 PF13972 TetR: Bacterial trans 87.3 1.7 3.6E-05 33.2 5.3 81 73-161 65-145 (146)
3 PRK15383 type III secretion sy 63.9 5.7 0.00012 36.0 2.5 53 76-131 74-132 (335)
4 PRK15384 type III secretion sy 57.7 11 0.00024 34.3 3.2 89 76-171 73-193 (336)
5 KOG2033|consensus 52.8 77 0.0017 32.5 8.3 76 41-141 644-719 (863)
6 PRK15382 non-LEE encoded effec 50.7 16 0.00034 33.3 3.0 53 76-131 68-126 (326)
7 PF01552 Pico_P2B: Picornaviru 49.7 30 0.00065 26.7 4.0 25 71-95 35-59 (99)
8 PRK02292 V-type ATP synthase s 46.0 45 0.00097 26.7 4.7 94 40-153 77-185 (188)
9 PF14394 DUF4423: Domain of un 45.2 1.1E+02 0.0024 24.8 6.9 110 37-151 13-154 (171)
10 PF13337 Lon_2: Putative ATP-d 43.9 97 0.0021 29.7 7.2 85 35-129 362-457 (457)
11 PF11608 Limkain-b1: Limkain b 42.6 15 0.00033 28.2 1.4 20 9-28 45-64 (90)
12 PF10431 ClpB_D2-small: C-term 42.1 67 0.0014 22.1 4.6 32 111-143 13-44 (81)
13 PF11198 DUF2857: Protein of u 39.2 30 0.00065 28.4 2.8 46 96-143 26-72 (180)
14 COG0781 NusB Transcription ter 38.4 36 0.00079 27.5 3.1 39 125-164 53-91 (151)
15 PF02607 B12-binding_2: B12 bi 35.8 1.4E+02 0.003 20.1 5.3 43 72-114 32-76 (79)
16 TIGR01650 PD_CobS cobaltochela 35.7 36 0.00078 30.9 3.0 73 81-155 244-317 (327)
17 PF14355 Abi_C: Abortive infec 34.8 98 0.0021 21.7 4.5 42 45-92 1-42 (80)
18 KOG1766|consensus 32.5 49 0.0011 26.0 2.8 36 136-171 23-64 (104)
19 COG4086 Predicted secreted pro 32.1 4.1E+02 0.0088 24.4 9.6 73 69-161 210-282 (299)
20 PF13874 Nup54: Nucleoporin co 30.5 98 0.0021 24.2 4.3 39 71-109 78-117 (141)
21 cd08324 CARD_NOD1_CARD4 Caspas 29.7 1.7E+02 0.0037 22.2 5.3 61 75-135 8-71 (85)
22 TIGR02653 Lon_rel_chp conserve 29.4 1.4E+02 0.0031 30.0 6.1 87 35-129 371-466 (675)
23 PF07401 Lenti_VIF_2: Bovine L 28.2 52 0.0011 28.3 2.5 60 95-162 93-155 (198)
24 PF11472 DUF3206: Protein of u 28.2 2E+02 0.0044 23.1 5.7 52 33-118 65-120 (128)
25 PRK11805 N5-glutamine S-adenos 27.4 1E+02 0.0023 26.9 4.4 99 33-135 2-112 (307)
26 PF11116 DUF2624: Protein of u 27.3 1E+02 0.0022 23.3 3.7 25 45-79 17-41 (85)
27 PF03127 GAT: GAT domain; Int 26.2 2.6E+02 0.0057 20.3 9.4 75 75-152 7-87 (100)
28 PF14728 PHTB1_C: PTHB1 C-term 25.8 2.9E+02 0.0063 25.5 7.1 73 19-106 233-310 (377)
29 PF13174 TPR_6: Tetratricopept 25.4 1.2E+02 0.0027 16.3 3.1 28 46-83 1-28 (33)
30 PF08349 DUF1722: Protein of u 24.8 1.5E+02 0.0032 22.4 4.3 38 134-171 27-65 (117)
31 KOG0934|consensus 24.3 3.8E+02 0.0082 22.3 6.7 68 50-133 15-111 (145)
32 PTZ00246 proteasome subunit al 24.1 78 0.0017 26.6 2.9 37 68-104 182-236 (253)
33 TIGR02390 RNA_pol_rpoA1 DNA-di 23.4 3.4E+02 0.0073 27.8 7.6 117 21-155 597-717 (868)
34 TIGR03042 PS_II_psbQ_bact phot 23.3 3.5E+02 0.0076 22.1 6.4 76 96-171 29-111 (142)
35 TIGR00676 fadh2 5,10-methylene 23.2 1.8E+02 0.0038 25.0 4.9 124 14-144 44-182 (272)
36 COG2250 Uncharacterized conser 23.1 2.6E+02 0.0056 21.7 5.5 47 39-85 73-122 (132)
37 PRK13676 hypothetical protein; 23.0 3.2E+02 0.007 20.3 6.9 74 70-149 34-108 (114)
38 PF11001 DUF2841: Protein of u 22.7 46 0.00099 26.6 1.2 26 29-54 99-125 (126)
39 PF11808 DUF3329: Domain of un 22.7 64 0.0014 23.6 1.9 16 42-57 71-86 (90)
40 PRK15363 pathogenicity island 22.6 2.8E+02 0.0061 22.8 5.8 48 27-84 17-64 (157)
41 PF09441 Abp2: ARS binding pro 22.3 2.6E+02 0.0055 23.9 5.5 47 75-123 67-116 (175)
42 PF04548 AIG1: AIG1 family; I 22.1 1.1E+02 0.0023 24.9 3.2 60 90-150 89-151 (212)
43 PRK09432 metF 5,10-methylenete 21.7 2.1E+02 0.0046 25.1 5.2 72 88-163 149-225 (296)
44 PF07133 Merozoite_SPAM: Meroz 21.5 92 0.002 26.2 2.8 36 70-115 134-169 (173)
45 cd03750 proteasome_alpha_type_ 21.1 1.1E+02 0.0023 25.3 3.1 36 68-103 176-223 (227)
46 cd07313 terB_like_2 tellurium 20.7 3.1E+02 0.0068 19.3 5.6 34 71-110 69-102 (104)
47 PF13971 Mei4: Meiosis-specifi 20.4 3.3E+02 0.0071 25.6 6.4 78 36-124 164-242 (375)
48 PRK09562 mazG nucleoside triph 20.4 4.9E+02 0.011 22.7 7.2 86 16-116 144-231 (262)
49 PF12830 Nipped-B_C: Sister ch 20.4 2.8E+02 0.006 22.4 5.3 32 41-87 110-141 (187)
50 PRK03996 proteasome subunit al 20.3 1.2E+02 0.0027 25.0 3.3 36 68-103 185-233 (241)
51 cd07353 harmonin_N N-terminal 20.3 85 0.0018 23.5 2.1 27 29-57 8-34 (79)
No 1
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=100.00 E-value=3.6e-74 Score=473.97 Aligned_cols=152 Identities=47% Similarity=0.767 Sum_probs=110.7
Q ss_pred CCcCcchhHHHHHHHHHhhhccccchhhhhcccchHHhHHHHHHHHHHHhccccCCCCCCCCCChHHHHHHHHHHHHHHH
Q psy11482 7 TDRFKTNDLAMRVQKKLASKMSNKSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIII 86 (172)
Q Consensus 7 ~~~f~sk~lalrAQKKllskmask~~~k~fIDDtss~lLD~LYrl~K~yt~~~~~~~~~~~~~nkkeAeKviK~lIKi~v 86 (172)
||.|+|+|||+|||||||||||||++|++||||||++||||||+++|+||+ ||+|||||+|||||++|
T Consensus 1 ~~~F~sk~lalrAQKKilskmask~~ak~fIddtsselLD~ly~l~K~~t~------------~kkeA~ki~KniIKi~v 68 (186)
T PF05527_consen 1 MESFSSKSLALRAQKKILSKMASKSVAKMFIDDTSSELLDELYRLLKEYTG------------NKKEAEKIIKNIIKIVV 68 (186)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHS-------------HHHHHHHHHHHHHHHH
T ss_pred CCCcccchHHHHHHHHHHHhhhhhhhhHHhcCchHHHHHHHHHHHHHHHhc------------CHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHHHHHhhHHHhhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHH
Q psy11482 87 KTTLLVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRHLTSKNLTNLDNLYY 166 (172)
Q Consensus 87 KigvL~rn~qf~~eEl~~~~~fr~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~lL~~lv~~HLT~KS~~Ri~~vF~ 166 (172)
|||||+||+|||+||++.+++||+|||++|||+|||||||||||++||.++|.|||++|+++|+||||||||+||||||+
T Consensus 69 Kigvl~rn~qf~~eEl~~~~~fr~k~~~~amt~iSF~eV~fTfD~~~L~~~L~ec~~~L~~lv~~HLT~KS~~Ri~~vF~ 148 (186)
T PF05527_consen 69 KIGVLYRNNQFSDEELALAEKFRKKFHQLAMTAISFYEVDFTFDRNYLSKLLKECRDLLHQLVEPHLTPKSHGRIDHVFN 148 (186)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHTSTTS---HHHHHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHH
T ss_pred HhheeeecCCCCHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh
Q psy11482 167 CLKV 170 (172)
Q Consensus 167 ~~~~ 170 (172)
||++
T Consensus 149 ~f~~ 152 (186)
T PF05527_consen 149 FFSD 152 (186)
T ss_dssp HHT-
T ss_pred hhCC
Confidence 9985
No 2
>PF13972 TetR: Bacterial transcriptional repressor; PDB: 3RH2_A 3NNR_A.
Probab=87.33 E-value=1.7 Score=33.20 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhhHHHhhhccccccccHHHHHHHHHHHHHHHHHHHhhc
Q psy11482 73 QSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRH 152 (172)
Q Consensus 73 eAeKviK~lIKi~vKigvL~rn~qf~~eEl~~~~~fr~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~lL~~lv~~H 152 (172)
.-.+.+.+++.-.+..|++. .+++|+.. +=..+.-++-.=+||.++--.-+. .-...+...-..+..++.||
T Consensus 65 ~~~~~~~~l~~~l~~~g~l~----~~~~~~~~---La~~i~lv~t~Wl~~~~~~~~~~~-~~~~~~~~gv~qv~~L~~Py 136 (146)
T PF13972_consen 65 RRREQLRQLLQSLIEAGILR----IDDEELQA---LADNIWLVSTFWLSFLETQHPRDK-LTEEDIRRGVYQVLSLLRPY 136 (146)
T ss_dssp HHHHHHHHHHHHHHHTTSB-------GHHHHH---HHHHHHHHHHCHHHHHHHHSS------HHCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHCCCCC----CCHHHHHH---HHHHHHHHHHHHHhHHHHhCcccc-chHHHHHHHHHHHHHHHHHh
Confidence 33445556666666667765 45666653 333333344444455543322211 23455666667889999999
Q ss_pred CCcchhhhh
Q psy11482 153 LTSKNLTNL 161 (172)
Q Consensus 153 LT~KS~~Ri 161 (172)
||++.+..+
T Consensus 137 Lt~~~~~~~ 145 (146)
T PF13972_consen 137 LTPEGREEF 145 (146)
T ss_dssp B-HHHHHHH
T ss_pred CCHHHHhhc
Confidence 999988754
No 3
>PRK15383 type III secretion system protein; Provisional
Probab=63.89 E-value=5.7 Score=36.03 Aligned_cols=53 Identities=19% Similarity=0.396 Sum_probs=39.3
Q ss_pred HHHHHHHHHHH-----HHHhhhcCCCCCHHHHHHHHHHHHHHHHhhHHHhhhcccccc-ccH
Q psy11482 76 KIIKTLIKIII-----KTTLLVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFS-YDA 131 (172)
Q Consensus 76 KviK~lIKi~v-----KigvL~rn~qf~~eEl~~~~~fr~K~~~~amT~iSF~eVdfT-fD~ 131 (172)
-.+-|+|+.+. =|||++ .+.|+.++-...-++-+.+.++- +|.=.+|||| ||+
T Consensus 74 PYL~NiinaA~IE~eR~IGv~V-DGdFs~~Qk~af~kLE~~yeNIk--iIYr~dvdfSMYDk 132 (335)
T PRK15383 74 PYLNNIINAAIIEKERIIGIFV-DGDFSKGQRKALGKLEQNYRNIK--VIYNSDLNYSMYDK 132 (335)
T ss_pred chHHHhhhHhhhccccEEEEEE-cCCcChhHHHHHHHHHHhhhcEE--EEEeccCChhhhhh
Confidence 36677777665 378888 78899999888888877777653 4555688998 665
No 4
>PRK15384 type III secretion system protein; Provisional
Probab=57.73 E-value=11 Score=34.29 Aligned_cols=89 Identities=19% Similarity=0.306 Sum_probs=57.2
Q ss_pred HHHHHHHHHHH-----HHHhhhcCCCCCHHHHHHHHHHHHHHHHhhHHHhhhcccccc-ccHH-----------------
Q psy11482 76 KIIKTLIKIII-----KTTLLVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFS-YDAA----------------- 132 (172)
Q Consensus 76 KviK~lIKi~v-----KigvL~rn~qf~~eEl~~~~~fr~K~~~~amT~iSF~eVdfT-fD~~----------------- 132 (172)
-.+-|+|+.+. =|||++ .+.|+.++-...-++-+.+.++- +|.=.+|||| ||+.
T Consensus 73 PYL~NiinaA~IE~eR~IGv~V-DGdFs~~Qk~af~kLE~~yeNIk--iIYr~dvdfSMYDkKLsdIY~enI~kqe~~~~ 149 (336)
T PRK15384 73 PYLNNIIKAATIEKERLIGIFV-DGDFFPGQKDAFSKLEYDYENIK--VIYRNDIDFSMYDKKLSEIYMENISKQESMPE 149 (336)
T ss_pred chHHHhHhHhhhccccEEEEEE-cCCcChhHHHHHHHHHHhhhcEE--EEEeccCChhhhhhHHhHHHHHHHHHhhcCch
Confidence 36777777665 378888 78899999888888877777653 4555688888 6653
Q ss_pred -----HHHHHHHH-HHHHH---HHHHhhcCCcchhhhhhHHHHhhhhh
Q psy11482 133 -----YLIRQLTT-LRSQL---AGLLQRHLTSKNLTNLDNLYYCLKVL 171 (172)
Q Consensus 133 -----~L~~~L~e-cr~lL---~~lv~~HLT~KS~~Ri~~vF~~~~~~ 171 (172)
||.++|.+ .++.+ ..||.-|...+-|.+ ||||.+|
T Consensus 150 ~~RD~yLL~ll~keL~~i~~~~dsLI~sy~~~r~H~w----FDF~RNl 193 (336)
T PRK15384 150 EKRDYHLLQLLKKELSDIQEGNDSLIKSYLLDKGHGW----FDFYRNM 193 (336)
T ss_pred hhhHHHHHHHHHHHHHHhhccchhHHHHHHHhcCcch----hHHHHHH
Confidence 33333321 11111 345666666666665 6788776
No 5
>KOG2033|consensus
Probab=52.77 E-value=77 Score=32.49 Aligned_cols=76 Identities=22% Similarity=0.197 Sum_probs=51.0
Q ss_pred hHHhHHHHHHHHHHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhhHHHh
Q psy11482 41 SGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHTLLMSLI 120 (172)
Q Consensus 41 ss~lLD~LYrl~K~yt~~~~~~~~~~~~~nkkeAeKviK~lIKi~vKigvL~rn~qf~~eEl~~~~~fr~K~~~~amT~i 120 (172)
|-.+---|+|+..+.-+ +|..+++++.-|+.++.+| +||...| |.+..++.. +.+.++|+-+.
T Consensus 644 slyiqSfL~rl~qeInr------vggh~Lp~~vLQ~f~~sl~---~k~~~~Y-------E~l~~a~~~-kasqn~aLQll 706 (863)
T KOG2033|consen 644 SLYIQSFLQRLHQEINR------VGGHTLPPKVLQAFIQSLI---GKLLCHY-------EGLAHAECT-KASQNIALQLL 706 (863)
T ss_pred cHHHHHHHHHHHHHHHH------hcCCCCCHHHHHHHHHHHH---HHHHHHH-------hhhhHHHHH-HHHHhhHHHHH
Confidence 33455567788887766 7888999999999999875 6777766 344444444 25566666654
Q ss_pred hhccccccccHHHHHHHHHHH
Q psy11482 121 SFYEVDFSYDAAYLIRQLTTL 141 (172)
Q Consensus 121 SF~eVdfTfD~~~L~~~L~ec 141 (172)
||-+||...|.-.
T Consensus 707 --------~DLrfl~~Vl~~~ 719 (863)
T KOG2033|consen 707 --------FDLRFLERVLAIS 719 (863)
T ss_pred --------HHHHHHHHHHhcC
Confidence 6666666666533
No 6
>PRK15382 non-LEE encoded effector protein NleB; Provisional
Probab=50.73 E-value=16 Score=33.26 Aligned_cols=53 Identities=25% Similarity=0.402 Sum_probs=39.3
Q ss_pred HHHHHHHHHHH-----HHHhhhcCCCCCHHHHHHHHHHHHHHHHhhHHHhhhcccccc-ccH
Q psy11482 76 KIIKTLIKIII-----KTTLLVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFS-YDA 131 (172)
Q Consensus 76 KviK~lIKi~v-----KigvL~rn~qf~~eEl~~~~~fr~K~~~~amT~iSF~eVdfT-fD~ 131 (172)
-.+-|+|+.+. =|||++ .+-|+.++-...-++-+.+.++- +|.=-+|||| ||+
T Consensus 68 PYL~NiinaA~IE~eR~IGv~V-DGdFs~~Qk~af~kLE~~~eNIk--iIYr~dvdfSMYDk 126 (326)
T PRK15382 68 PYLSNIINAAKIENERIIGVLV-DGDFTYEQKKEFLSLENEFQNIK--IIYREDVDFSMYDK 126 (326)
T ss_pred chHHHhhhHhhhccccEEEEEE-cCCcChhHHHHHHHHHHhhhcEE--EEEeccCChhhhhh
Confidence 35677777664 378888 78899999888888887777653 4555689998 665
No 7
>PF01552 Pico_P2B: Picornavirus 2B protein; InterPro: IPR002527 Poliovirus infection leads to drastic alterations in membrane permeability late during infection. Proteins 2B and 2BC enhance membrane permeability [, ].; GO: 0000166 nucleotide binding, 0003968 RNA-directed RNA polymerase activity, 0005198 structural molecule activity, 0008233 peptidase activity, 0008234 cysteine-type peptidase activity, 0016740 transferase activity, 0016779 nucleotidyltransferase activity, 0016787 hydrolase activity, 0018144 RNA-protein covalent cross-linking, 0019012 virion
Probab=49.66 E-value=30 Score=26.73 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCC
Q psy11482 71 KKQSEKIIKTLIKIIIKTTLLVKNH 95 (172)
Q Consensus 71 kkeAeKviK~lIKi~vKigvL~rn~ 95 (172)
.+-.+|++|.|||++-=+-++.||+
T Consensus 35 ~~~~~kilK~LvKiIsAlvIi~Rn~ 59 (99)
T PF01552_consen 35 DKITEKILKWLVKIISALVIIIRNS 59 (99)
T ss_pred HHHHHHHHHHHHHHHHHheeeeecC
Confidence 5678999999999999999999994
No 8
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=46.00 E-value=45 Score=26.67 Aligned_cols=94 Identities=11% Similarity=0.168 Sum_probs=49.0
Q ss_pred chHHhHHHHHHHHHHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhhHHH
Q psy11482 40 RSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHTLLMSL 119 (172)
Q Consensus 40 tss~lLD~LYrl~K~yt~~~~~~~~~~~~~nkkeAeKviK~lIKi~vKigvL~rn~qf~~eEl~~~~~fr~K~~~~amT~ 119 (172)
.--++|+++|.-+++.... +...+-+.+++++|+-.-.=+++.+.+ +++....+.+-+++.. .++
T Consensus 77 ~r~~~l~~v~~~a~~kL~~----------~~~~~y~~~l~~li~~~~~~~~~i~~~---~~D~~~~~~~~~~~~~--~~~ 141 (188)
T PRK02292 77 ARKEVLEDVRNQVEDEIAS----------LDGDKREELTKSLLDAADADGVRVYSR---KDDEDLVKSLLSDYDG--LEY 141 (188)
T ss_pred HHHHHHHHHHHHHHHHHHh----------cchhhHHHHHHHHHHhcCCCCeEEEEc---cccHHHHHHHHHhccc--Cee
Confidence 3345566666655555541 122345667777777653322333332 5556666666655421 111
Q ss_pred h---h----------hc--cccccccHHHHHHHHHHHHHHHHHHHhhcC
Q psy11482 120 I---S----------FY--EVDFSYDAAYLIRQLTTLRSQLAGLLQRHL 153 (172)
Q Consensus 120 i---S----------F~--eVdfTfD~~~L~~~L~ecr~lL~~lv~~HL 153 (172)
. + -+ ++|+||+- .|..+++-+.+-|.+.|
T Consensus 142 ~~~~~~~GGvil~~~~g~I~~dnT~~~-----rl~~~~~~~~~~i~~~L 185 (188)
T PRK02292 142 AGNIDCLGGVVVESEDGRVRVNNTFDS-----ILEDVWEDNLKEISDRL 185 (188)
T ss_pred CCCCCCCceEEEEecCCceEEeccHHH-----HHHHHHHHhhHHHHHHh
Confidence 1 1 12 45888776 56667777666665544
No 9
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=45.23 E-value=1.1e+02 Score=24.84 Aligned_cols=110 Identities=10% Similarity=0.238 Sum_probs=69.5
Q ss_pred cccchHHhHHHHHH-HHHHHhccccCCCCCCCCCChHHHHHH--------HHHHHHHHHHHHhhhcCCC---------CC
Q psy11482 37 IDDRSGRLLDNLYR-VIKTYVSFRHQSGNGKDTNNKKQSEKI--------IKTLIKIIIKTTLLVKNHQ---------FS 98 (172)
Q Consensus 37 IDDtss~lLD~LYr-l~K~yt~~~~~~~~~~~~~nkkeAeKv--------iK~lIKi~vKigvL~rn~q---------f~ 98 (172)
+|...-+.+.+=|- +.++-..-.|-.+ ....-|+++ +++.|...+|+|++-+++. ++
T Consensus 13 l~~~~~~~~~~W~~~~ir~l~~l~~~~~-----d~~~iak~l~p~is~~ev~~sL~~L~~~gli~k~~~g~y~~t~~~l~ 87 (171)
T PF14394_consen 13 LDEDEFEYYSSWYHPAIRELLPLMPFAP-----DPEWIAKRLRPKISAEEVRDSLEFLEKLGLIKKDGDGKYVQTDKSLT 87 (171)
T ss_pred ccHHHHHHHhhhHHHHHHHHhhcCCCCC-----CHHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEECCCCcEEEecceee
Confidence 44555555555443 4555554333111 123334444 6788999999999999987 33
Q ss_pred H---HHHHHHHHHHHHHHHhhHHHhhhc---ccc-----ccccH---HHHHHHHHHHHHHHHHHHhh
Q psy11482 99 S---TELTTCETLKAKFHTLLMSLISFY---EVD-----FSYDA---AYLIRQLTTLRSQLAGLLQR 151 (172)
Q Consensus 99 ~---eEl~~~~~fr~K~~~~amT~iSF~---eVd-----fTfD~---~~L~~~L~ecr~lL~~lv~~ 151 (172)
. ---..+..+++.+-.+|..++.-. +-+ ++.|+ .-+.+.|.+||.-+..+++.
T Consensus 88 ~~~~~~~~avr~~h~q~~~lA~~al~~~p~~~R~~s~~T~~vs~~~~~ki~~~i~~fRk~i~~i~~~ 154 (171)
T PF14394_consen 88 TSSEIPSEAVRSYHKQMLELAQEALDRVPPEERDFSGLTMSVSREDYEKIKKEIREFRKKIIAIAEE 154 (171)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHhCCccccceeeeEEEeCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 122457889999999999999833 333 33333 34778888888888887764
No 10
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=43.86 E-value=97 Score=29.71 Aligned_cols=85 Identities=24% Similarity=0.454 Sum_probs=56.1
Q ss_pred hhcccchHHhHHHHHHHH-----HHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHH----
Q psy11482 35 MYIDDRSGRLLDNLYRVI-----KTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTC---- 105 (172)
Q Consensus 35 ~fIDDtss~lLD~LYrl~-----K~yt~~~~~~~~~~~~~nkkeAeKviK~lIKi~vKigvL~rn~qf~~eEl~~~---- 105 (172)
-||-|=-+|+|-+|-+.. ..|.. -|++-+.-+.+...|++--++|+ |+=++.++.||++-+
T Consensus 362 gl~~Dy~aE~l~~LR~~~~~~~~~~~~~----lg~~~~~RD~~AV~kt~SgllKL------L~P~~~~~~ee~~~~l~~A 431 (457)
T PF13337_consen 362 GLIVDYFAEILHELRKQSYSDAVDKYFK----LGSNLSQRDTKAVKKTVSGLLKL------LFPHGEFTKEELEECLRPA 431 (457)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHhhEe----eCCCcchhhHHHHHHHHHHHHHh------hCCCCCCCHHHHHHHHHHH
Confidence 456677778887776644 22332 34445555666777777778775 899999999997654
Q ss_pred HHHHHHHHHhhHHH--hhhccccccc
Q psy11482 106 ETLKAKFHTLLMSL--ISFYEVDFSY 129 (172)
Q Consensus 106 ~~fr~K~~~~amT~--iSF~eVdfTf 129 (172)
-+.|++++.-.-.+ .-|++|.|||
T Consensus 432 ~e~R~rVkeQl~~i~~~Ef~~~~fsy 457 (457)
T PF13337_consen 432 LEMRRRVKEQLKRIDPMEFRDTNFSY 457 (457)
T ss_pred HHHHHHHHHHHhccCcCcccCCCCCC
Confidence 44555555433333 3589999998
No 11
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=42.62 E-value=15 Score=28.18 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=16.8
Q ss_pred cCcchhHHHHHHHHHhhhcc
Q psy11482 9 RFKTNDLAMRVQKKLASKMS 28 (172)
Q Consensus 9 ~f~sk~lalrAQKKllskma 28 (172)
+|.+.+.|-||||++=|..+
T Consensus 45 rF~~~~~A~RA~KRmegEdV 64 (90)
T PF11608_consen 45 RFPNQEFAERAQKRMEGEDV 64 (90)
T ss_dssp EESSHHHHHHHHHHHTT--S
T ss_pred EeCCHHHHHHHHHhhccccc
Confidence 59999999999999988876
No 12
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=42.06 E-value=67 Score=22.15 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=23.9
Q ss_pred HHHHhhHHHhhhccccccccHHHHHHHHHHHHH
Q psy11482 111 KFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRS 143 (172)
Q Consensus 111 K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~ 143 (172)
.+..+.--+-. ++++++||...+..+...|.+
T Consensus 13 ~l~~l~~~l~~-~~i~l~~~~~~~~~l~~~~~~ 44 (81)
T PF10431_consen 13 QLKKLNERLKE-KGIELEFDDAVVDYLAEKGYD 44 (81)
T ss_dssp HHHHHHHHHHH-TTEEEEE-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCeEEecHHHHHHHHHhCcc
Confidence 45555555555 899999999999999998853
No 13
>PF11198 DUF2857: Protein of unknown function (DUF2857); InterPro: IPR021364 This is a bacterial family of uncharacterised proteins.
Probab=39.21 E-value=30 Score=28.40 Aligned_cols=46 Identities=33% Similarity=0.395 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHH-HHHHHhhHHHhhhccccccccHHHHHHHHHHHHH
Q psy11482 96 QFSSTELTTCETLK-AKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRS 143 (172)
Q Consensus 96 qf~~eEl~~~~~fr-~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~ 143 (172)
-|++||+..+...- +-+|.++-+.+||.. +++|.++|..+|..++.
T Consensus 26 G~~~eel~~L~~ls~~~l~~L~~~~v~~~~--i~in~~~l~~~L~~~~~ 72 (180)
T PF11198_consen 26 GFSPEELDALQQLSLDDLHYLANSSVSFVS--ISINHDVLWRLLEQARR 72 (180)
T ss_pred CCCHHHHHHHhCCCHHHHHHHhcCCcceee--eeeCHHHHHHHHHHHHH
Confidence 48999999888553 346667777777755 78889999999999884
No 14
>COG0781 NusB Transcription termination factor [Transcription]
Probab=38.40 E-value=36 Score=27.52 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=28.5
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHH
Q psy11482 125 VDFSYDAAYLIRQLTTLRSQLAGLLQRHLTSKNLTNLDNL 164 (172)
Q Consensus 125 VdfTfD~~~L~~~L~ecr~lL~~lv~~HLT~KS~~Ri~~v 164 (172)
.+..|=...+.+.+ +=++-|..++++||+..|.+|++.|
T Consensus 53 ~~~~~~~~lv~gv~-~~~~~iD~~I~~~L~~w~~~rL~~v 91 (151)
T COG0781 53 ADSEYFRSLVKGVL-ENQEELDELISPHLKKWSLERLDLV 91 (151)
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCHHHhhHH
Confidence 34444444444444 4567789999999999999999976
No 15
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=35.78 E-value=1.4e+02 Score=20.13 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=30.4
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhcCCCCCHHHHHH-HHHHHHHHHH
Q psy11482 72 KQSEKIIKT-LIKIIIKTTLLVKNHQFSSTELTT-CETLKAKFHT 114 (172)
Q Consensus 72 keAeKviK~-lIKi~vKigvL~rn~qf~~eEl~~-~~~fr~K~~~ 114 (172)
..+++++.+ +....-+||-++.++.++-.|.-. .+.+++.+..
T Consensus 32 ~~~~~i~~~~l~p~m~~iG~~w~~~~~~v~~e~~as~~~~~~l~~ 76 (79)
T PF02607_consen 32 YPPEDIIEEILMPAMEEIGELWEEGEISVAQEHLASEAMRAALSI 76 (79)
T ss_dssp SSTTHHHHHTHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Confidence 456777877 888889999999999999775544 4445555443
No 16
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=35.70 E-value=36 Score=30.88 Aligned_cols=73 Identities=14% Similarity=0.260 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhhHHHhhhc-cccccccHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy11482 81 LIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHTLLMSLISFY-EVDFSYDAAYLIRQLTTLRSQLAGLLQRHLTS 155 (172)
Q Consensus 81 lIKi~vKigvL~rn~qf~~eEl~~~~~fr~K~~~~amT~iSF~-eVdfTfD~~~L~~~L~ecr~lL~~lv~~HLT~ 155 (172)
+++.+|+++-..|+. |=.+++...---|.=++-+-.+. -|. .+.+.||..++.+.=.+-|..++++.||+.-.
T Consensus 244 i~~~mV~la~~tR~~-~~~~~i~~~~SpR~li~w~~~~~-~f~~~~~~a~~~~~~n~~~~~er~~~~e~~q~~f~~ 317 (327)
T TIGR01650 244 IINAMVRVADMTRNA-FINGDISTVMSPRTVITWAENAE-IFDHDIALAFRLTFLNKCDELERPTVAEFFQRAFGE 317 (327)
T ss_pred HHHHHHHHHHHHHhh-hccCCccccccHHHHHHHHHHHH-hhCccHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCC
Confidence 455556666666762 32223333333343333333332 344 89999999999998888899999999998654
No 17
>PF14355 Abi_C: Abortive infection C-terminus
Probab=34.85 E-value=98 Score=21.68 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhh
Q psy11482 45 LDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTTLLV 92 (172)
Q Consensus 45 LD~LYrl~K~yt~~~~~~~~~~~~~nkkeAeKviK~lIKi~vKigvL~ 92 (172)
|..||+.++..-+..|.++.. +..+++++.+.+++--|+-|-
T Consensus 1 l~~L~k~~~~~L~~~~~~~~~------~~ik~il~~l~~i~~~i~~lR 42 (80)
T PF14355_consen 1 LPKLVKKVKKALGLSPDSQSD------KDIKKILSSLNSIVSGINELR 42 (80)
T ss_pred ChHHHHHHHHHHccCCcccch------HHHHHHHHHHHHHHHHHHHHH
Confidence 356788777777766644433 788899999999998887764
No 18
>KOG1766|consensus
Probab=32.48 E-value=49 Score=25.99 Aligned_cols=36 Identities=17% Similarity=0.347 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhcCCcc--hhh----hhhHHHHhhhhh
Q psy11482 136 RQLTTLRSQLAGLLQRHLTSK--NLT----NLDNLYYCLKVL 171 (172)
Q Consensus 136 ~~L~ecr~lL~~lv~~HLT~K--S~~----Ri~~vF~~~~~~ 171 (172)
+..+||-+-++.+-++||..| |.. -|-++|+|+-.|
T Consensus 23 esv~e~megiCk~yEe~Lkk~nPs~~~ITYDIsqlfeFiD~L 64 (104)
T KOG1766|consen 23 ESVTECMEGICKMYEEHLKKKNPSAPPITYDISQLFEFIDDL 64 (104)
T ss_pred HhHHHHHHHHHHHHHHHHHhcCCCCCCcceeHHHHHHHHHHH
Confidence 568999999999999999998 444 367999998655
No 19
>COG4086 Predicted secreted protein [Function unknown]
Probab=32.05 E-value=4.1e+02 Score=24.45 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhhHHHhhhccccccccHHHHHHHHHHHHHHHHHH
Q psy11482 69 NNKKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGL 148 (172)
Q Consensus 69 ~nkkeAeKviK~lIKi~vKigvL~rn~qf~~eEl~~~~~fr~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~lL~~l 148 (172)
.++.+.+|++++..+- + |=.++++++..+..+.-++.. -+. |..=..++|+++++-|..+
T Consensus 210 ~~~~dirkvv~dv~~~-------y-nvnltd~qvn~i~~~~~~~~~--------~n~----d~~kv~~~L~qa~d~l~~~ 269 (299)
T COG4086 210 DDPADIRKVVDDVANN-------Y-NVNLTDTQVNQIVNLFLAMSN--------LNI----DWTKVQGQLKQAKDSLKWF 269 (299)
T ss_pred CCHHHHHHHHHHHHHH-------c-CCCCCHHHHHHHHHHHHHhhc--------cCc----cHHHhhhHHHHHHHHHHHH
Confidence 4788999999998764 2 223999999988877766555 233 3334889999999999999
Q ss_pred HhhcCCcchhhhh
Q psy11482 149 LQRHLTSKNLTNL 161 (172)
Q Consensus 149 v~~HLT~KS~~Ri 161 (172)
.++-...+=.+||
T Consensus 270 ~~~~ea~~il~~i 282 (299)
T COG4086 270 LQRDEAKGILERI 282 (299)
T ss_pred HHhhhhhHHHHHH
Confidence 9999988877774
No 20
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=30.46 E-value=98 Score=24.23 Aligned_cols=39 Identities=15% Similarity=0.337 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHH
Q psy11482 71 KKQSEKIIKTLIKIIIKTTLLVKNH-QFSSTELTTCETLK 109 (172)
Q Consensus 71 kkeAeKviK~lIKi~vKigvL~rn~-qf~~eEl~~~~~fr 109 (172)
+..-..+...+++++.|+-|+-+-+ .+++||-.+..+|.
T Consensus 78 r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le 117 (141)
T PF13874_consen 78 RRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLE 117 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4455678889999999999887765 89899877666554
No 21
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=29.69 E-value=1.7e+02 Score=22.24 Aligned_cols=61 Identities=20% Similarity=0.092 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH---HHHHHHhhHHHhhhccccccccHHHHH
Q psy11482 75 EKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETL---KAKFHTLLMSLISFYEVDFSYDAAYLI 135 (172)
Q Consensus 75 eKviK~lIKi~vKigvL~rn~qf~~eEl~~~~~f---r~K~~~~amT~iSF~eVdfTfD~~~L~ 135 (172)
+++|.++=.+--=+-=|+.|+.|++||.+..... .+|+|.+.-.+=|-++..+.|=..+|.
T Consensus 8 e~LV~rI~~v~plLD~Ll~n~~it~E~y~~V~a~~T~qdkmRkLld~v~akG~~~k~~F~~iL~ 71 (85)
T cd08324 8 ELLVTHIRNTQCLVDNLLKNDYFSTEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEYFLYLLQ 71 (85)
T ss_pred HHHHHHHHhhHHHHHHHhccCCccHHHHHHHHhCCCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 5666666666666667899999999999888765 478888888888888877655444443
No 22
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=29.43 E-value=1.4e+02 Score=30.02 Aligned_cols=87 Identities=18% Similarity=0.385 Sum_probs=54.3
Q ss_pred hhcccchHHhHHHHHHHHHHHhc---cccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHH----
Q psy11482 35 MYIDDRSGRLLDNLYRVIKTYVS---FRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCET---- 107 (172)
Q Consensus 35 ~fIDDtss~lLD~LYrl~K~yt~---~~~~~~~~~~~~nkkeAeKviK~lIKi~vKigvL~rn~qf~~eEl~~~~~---- 107 (172)
-||=|=-+|.|-+|-+.. |+. ..-.-|++-+.-+.+...|.+--++|+ ||=+++++.||++.+-+
T Consensus 371 Gl~~DylsE~l~~lR~~~--~~~~~~~~~~l~~~~~~RD~~aV~kt~SgllKL------l~P~~~~~~ee~e~~l~~Ale 442 (675)
T TIGR02653 371 GFIVDYLAEYMREMRKRS--FADAIDRFFKLGNNLNQRDVIAVRKTVSGLLKL------LYPDGEYTKDDVRECLTYAME 442 (675)
T ss_pred cchHHHHHHHHHHHHhhh--HHHHHHhhEecCCCCchhhHHHHHHHHHHHHHH------hCCCCCCCHHHHHHHHHHHHH
Confidence 355566677776665532 211 011124455555667777777788874 78999999999876543
Q ss_pred HHHHHHHhh--HHHhhhccccccc
Q psy11482 108 LKAKFHTLL--MSLISFYEVDFSY 129 (172)
Q Consensus 108 fr~K~~~~a--mT~iSF~eVdfTf 129 (172)
.|++++.-. |.-.-|++|.|||
T Consensus 443 ~RrrVkeQl~~i~~~ef~~~~fsy 466 (675)
T TIGR02653 443 GRRRVKEQLKKLGGFEFFDVNFSY 466 (675)
T ss_pred HHHHHHHHHHhcCCceeccceeee
Confidence 344444333 3334599999999
No 23
>PF07401 Lenti_VIF_2: Bovine Lentivirus VIF protein; InterPro: IPR009979 This family consists of several Lentivirus viral infectivity factor (VIF) proteins. VIF is known to be essential for ability of cell-free virus preparation to infect cells []. Members of this family are specific to Bovine immunodeficiency virus (BIV) and Jembrana disease virus (JDV) which also infects cattle.
Probab=28.22 E-value=52 Score=28.26 Aligned_cols=60 Identities=15% Similarity=0.258 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhHHHhhhccccccccHHHHHHHHH---HHHHHHHHHHhhcCCcchhhhhh
Q psy11482 95 HQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLT---TLRSQLAGLLQRHLTSKNLTNLD 162 (172)
Q Consensus 95 ~qf~~eEl~~~~~fr~K~~~~amT~iSF~eVdfTfD~~~L~~~L~---ecr~lL~~lv~~HLT~KS~~Ri~ 162 (172)
+.-+-+|+..+.-|. ++++.++=..-+. ++||.+-.. .|++.++.-|-+|--++|++|+-
T Consensus 93 G~yt~~d~~~~~~fw-----i~~csC~ke~~~i---ReFL~G~hr~wdlCKsc~QgEIVr~T~p~SLQRLa 155 (198)
T PF07401_consen 93 GTYTTVDINFLDLFW-----IRYCSCKKEKFDI---REFLLGKHRLWDLCKSCIQGEIVRHTEPKSLQRLA 155 (198)
T ss_pred CCceeccchhhhhHH-----HHhhcccCCCCCH---HHHHhcccccHHHHHHHhhhhhhhcCCchhHHHHH
Confidence 444556766666554 7777777665555 899988765 89999999999999999999984
No 24
>PF11472 DUF3206: Protein of unknown function (DUF3206); InterPro: IPR021571 This bacterial family of proteins has no known function. ; PDB: 2AU5_A.
Probab=28.16 E-value=2e+02 Score=23.12 Aligned_cols=52 Identities=21% Similarity=0.393 Sum_probs=37.6
Q ss_pred hhhhccc----chHHhHHHHHHHHHHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q psy11482 33 VKMYIDD----RSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETL 108 (172)
Q Consensus 33 ~k~fIDD----tss~lLD~LYrl~K~yt~~~~~~~~~~~~~nkkeAeKviK~lIKi~vKigvL~rn~qf~~eEl~~~~~f 108 (172)
+..++|| .+.+|.|++-++.+.|-. .|...+++.|-.+--.+
T Consensus 65 V~SL~~~~N~~~~~~L~~E~~~Li~LY~~----------------------------------~~~~~LT~N~~~L~~~i 110 (128)
T PF11472_consen 65 VQSLVDSENFSSTEQLMDEFNCLINLYFR----------------------------------ARQRNLTSNQDNLFVNI 110 (128)
T ss_dssp HHHHTT-TT-SSHHHHHHHHHHHHHHHHH----------------------------------HHTT---HHHHHHHHHH
T ss_pred HHHHhccCCcCcHHHHHHHHHHHHHHHHH----------------------------------HHHhhccccchhhhhhH
Confidence 3445553 578899999999999976 34667888888888899
Q ss_pred HHHHHHhhHH
Q psy11482 109 KAKFHTLLMS 118 (172)
Q Consensus 109 r~K~~~~amT 118 (172)
.+||-.+.++
T Consensus 111 ~DKF~~LLL~ 120 (128)
T PF11472_consen 111 FDKFTFLLLC 120 (128)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9998877665
No 25
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=27.40 E-value=1e+02 Score=26.91 Aligned_cols=99 Identities=14% Similarity=0.210 Sum_probs=57.4
Q ss_pred hhhhcccchHHhHH--HHHHHHHHHhccccCCCC---CCCCCChHHHHHHHHHHHHHHHHHHhh-hcCCCCCHHHHHHHH
Q psy11482 33 VKMYIDDRSGRLLD--NLYRVIKTYVSFRHQSGN---GKDTNNKKQSEKIIKTLIKIIIKTTLL-VKNHQFSSTELTTCE 106 (172)
Q Consensus 33 ~k~fIDDtss~lLD--~LYrl~K~yt~~~~~~~~---~~~~~nkkeAeKviK~lIKi~vKigvL-~rn~qf~~eEl~~~~ 106 (172)
-|.|+|++.-++.. ++.+.+..+-+ +.|- .....++.+|+=++-.+.++- +..++ ..+.++++++.+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~a~~ll~~~l~~~-~~~l~~~~~~~l~~~~~~~~~ 77 (307)
T PRK11805 2 DKIFVDEAVNELHTIRDLLRWAVSRFN---AAGLFFGHGTDNAWDEAVQLVLHALHLP-LDIPEPFLDARLTPSEKARIL 77 (307)
T ss_pred CccccccchhhhhHHHHHHHHHHHHHH---hcCCccCCCCCCHHHHHHHHHHHHHCcC-HHHHhhcccCCCCHHHHHHHH
Confidence 46789988877643 33333333332 1111 001124668999999998865 44444 345788888766554
Q ss_pred HHH-HHHH-----HhhHHHhhhccccccccHHHHH
Q psy11482 107 TLK-AKFH-----TLLMSLISFYEVDFSYDAAYLI 135 (172)
Q Consensus 107 ~fr-~K~~-----~~amT~iSF~eVdfTfD~~~L~ 135 (172)
++= ++.+ +-..--..|++.+|..++.+|+
T Consensus 78 ~~~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vli 112 (307)
T PRK11805 78 ELIERRINERIPAAYLTNEAWFCGLEFYVDERVLV 112 (307)
T ss_pred HHHHHHHHCCccHHHHcCcceEcCcEEEECCCCcC
Confidence 443 3322 2223346899999998876665
No 26
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=27.28 E-value=1e+02 Score=23.31 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhccccCCCCCCCCCChHHHHHHHH
Q psy11482 45 LDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIK 79 (172)
Q Consensus 45 LD~LYrl~K~yt~~~~~~~~~~~~~nkkeAeKviK 79 (172)
.+||.+++|+|.= +..+++|++|++
T Consensus 17 ~~eLlkyskqy~i----------~it~~QA~~I~~ 41 (85)
T PF11116_consen 17 AKELLKYSKQYNI----------SITKKQAEQIAN 41 (85)
T ss_pred HHHHHHHHHHhCC----------CCCHHHHHHHHH
Confidence 5789999999965 678999998875
No 27
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=26.19 E-value=2.6e+02 Score=20.33 Aligned_cols=75 Identities=20% Similarity=0.134 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHhh------hcCCCCCHHHHHHHHHHHHHHHHhhHHHhhhccccccccHHHHHHHHHHHHHHHHHH
Q psy11482 75 EKIIKTLIKIIIKTTLL------VKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGL 148 (172)
Q Consensus 75 eKviK~lIKi~vKigvL------~rn~qf~~eEl~~~~~fr~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~lL~~l 148 (172)
.|+..+|-++--++.+| +..+.-++++.+.+.++...|+.+--.+..+-+- +=|-.+|..+| ++.|-|.++
T Consensus 7 ~k~~~~l~~v~~~~~lL~emL~~~~~~~~~~~~~el~~eL~~~ck~~r~~i~~li~~--~~dee~l~~lL-~~ND~L~~~ 83 (100)
T PF03127_consen 7 SKRRSELEKVKNNAKLLNEMLDNYDPGEESSSDNELIQELYESCKSMRPRIQRLIEE--VEDEELLGELL-QANDELNQA 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHT--STTCHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhh--cCcHHHHHHHH-HHHHHHHHH
Confidence 44455555555555554 4567777888888888888888887777777643 33444555555 488888888
Q ss_pred Hhhc
Q psy11482 149 LQRH 152 (172)
Q Consensus 149 v~~H 152 (172)
+++|
T Consensus 84 l~~Y 87 (100)
T PF03127_consen 84 LERY 87 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 28
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=25.84 E-value=2.9e+02 Score=25.51 Aligned_cols=73 Identities=14% Similarity=0.251 Sum_probs=46.0
Q ss_pred HHHHHhhhccccchh-----hhhcccchHHhHHHHHHHHHHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhc
Q psy11482 19 VQKKLASKMSNKSMV-----KMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTTLLVK 93 (172)
Q Consensus 19 AQKKllskmask~~~-----k~fIDDtss~lLD~LYrl~K~yt~~~~~~~~~~~~~nkkeAeKviK~lIKi~vKigvL~r 93 (172)
.||++|.|.-.++.+ .+++|+|-.+|+.-...+.+.-. +-+.|.--+..++.+++ -++.-
T Consensus 233 IQrrlL~r~kd~~p~~l~~L~~LLe~ty~~l~~~~d~~~~~~~-------------~l~~a~~~L~~~~~Ll~--~L~~l 297 (377)
T PF14728_consen 233 IQRRLLTRFKDKNPAPLDNLDTLLEGTYRQLIALADEIEELQA-------------NLKRAGASLSCATQLLI--LLLKL 297 (377)
T ss_pred HHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHhhhHHHHHHHHH--HHHHh
Confidence 589999776644444 46666666666655555554433 35566666666666663 33323
Q ss_pred CCCCCHHHHHHHH
Q psy11482 94 NHQFSSTELTTCE 106 (172)
Q Consensus 94 n~qf~~eEl~~~~ 106 (172)
...+++++.+.++
T Consensus 298 ~~~l~~~~~~~l~ 310 (377)
T PF14728_consen 298 RFNLNEDDVELLE 310 (377)
T ss_pred hcCCCHHHHHHHH
Confidence 3468999999888
No 29
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=25.37 E-value=1.2e+02 Score=16.35 Aligned_cols=28 Identities=29% Similarity=0.572 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhccccCCCCCCCCCChHHHHHHHHHHHH
Q psy11482 46 DNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIK 83 (172)
Q Consensus 46 D~LYrl~K~yt~~~~~~~~~~~~~nkkeAeKviK~lIK 83 (172)
|.+|+++..|... -+..+|.+....+|+
T Consensus 1 ~a~~~~a~~~~~~----------g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 1 DALYRLARCYYKL----------GDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHH----------CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHc----------cCHHHHHHHHHHHHH
Confidence 4677877777651 145678888777765
No 30
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=24.76 E-value=1.5e+02 Score=22.37 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcchhhh-hhHHHHhhhhh
Q psy11482 134 LIRQLTTLRSQLAGLLQRHLTSKNLTN-LDNLYYCLKVL 171 (172)
Q Consensus 134 L~~~L~ecr~lL~~lv~~HLT~KS~~R-i~~vF~~~~~~ 171 (172)
+...+.+=...|.+++..+-|.+++-. +.|+|++|++-
T Consensus 27 ~~~~~~~Y~~~l~~al~~~~~~~~~~Nvl~Hi~Gyfk~~ 65 (117)
T PF08349_consen 27 LEEVFEEYEELLMEALSKPPTRGSHINVLQHIFGYFKKK 65 (117)
T ss_pred hHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHh
Confidence 344566677888888899988888766 58999999863
No 31
>KOG0934|consensus
Probab=24.32 E-value=3.8e+02 Score=22.27 Aligned_cols=68 Identities=29% Similarity=0.394 Sum_probs=46.9
Q ss_pred HHHHHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcCCC---C------------------------CHHHH
Q psy11482 50 RVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTTLLVKNHQ---F------------------------SSTEL 102 (172)
Q Consensus 50 rl~K~yt~~~~~~~~~~~~~nkkeAeKviK~lIKi~vKigvL~rn~q---f------------------------~~eEl 102 (172)
||.|-|+. ++.++-.|+.+++|+++ |.|+++ | ++.||
T Consensus 15 rL~k~y~~-----------~~~~er~~i~re~i~~~-----Lar~pk~csfie~kd~kvVyrryasl~f~~~v~~~dNEL 78 (145)
T KOG0934|consen 15 RLQKWYEA-----------LSIKERKKIERELIKSV-----LARKPKMCSFIEYKDEKVVYRRYASLFFCVGVEDNDNEL 78 (145)
T ss_pred ehhHHHhh-----------hcHHHHHHHHHHHHHHH-----HhCCcccccchhccCceehhhhhhhEEEEEEEecCCchh
Confidence 56666654 68889999999999975 557766 1 67799
Q ss_pred HHHHHHHHHHHHhhHHHhhhccccccc--cHHH
Q psy11482 103 TTCETLKAKFHTLLMSLISFYEVDFSY--DAAY 133 (172)
Q Consensus 103 ~~~~~fr~K~~~~amT~iSF~eVdfTf--D~~~ 133 (172)
..+|-+++=+..+=-=.=|-.|.|+.| ++.|
T Consensus 79 ~~LE~IH~~vE~lDkYFg~VCELDiiFNfekay 111 (145)
T KOG0934|consen 79 AILEFIHNYVELLDKYFGSVCELDIIFNFEKAY 111 (145)
T ss_pred hHHHHHHHHHHHHHHHhccceeeEEEEehHhHH
Confidence 999988876655544444445666554 4444
No 32
>PTZ00246 proteasome subunit alpha; Provisional
Probab=24.07 E-value=78 Score=26.56 Aligned_cols=37 Identities=11% Similarity=0.155 Sum_probs=27.6
Q ss_pred CCChHHHHHHHHHHHHHHHH----------HHhhhcC--------CCCCHHHHHH
Q psy11482 68 TNNKKQSEKIIKTLIKIIIK----------TTLLVKN--------HQFSSTELTT 104 (172)
Q Consensus 68 ~~nkkeAeKviK~lIKi~vK----------igvL~rn--------~qf~~eEl~~ 104 (172)
.++.+||.+++++.++.+.. |+++.++ ..|++||++.
T Consensus 182 ~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~ 236 (253)
T PTZ00246 182 DLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAE 236 (253)
T ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHH
Confidence 46889999999998887765 6677665 2378887654
No 33
>TIGR02390 RNA_pol_rpoA1 DNA-directed RNA polymerase subunit A'. This family consists of the archaeal A' subunit of the DNA-directed RNA polymerase. The example from Methanocaldococcus jannaschii contains an intein.
Probab=23.37 E-value=3.4e+02 Score=27.75 Aligned_cols=117 Identities=15% Similarity=0.248 Sum_probs=63.2
Q ss_pred HHHhhhccccchhhhhcc----cchHHhHHHHHHHHHHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy11482 21 KKLASKMSNKSMVKMYID----DRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTTLLVKNHQ 96 (172)
Q Consensus 21 KKllskmask~~~k~fID----Dtss~lLD~LYrl~K~yt~~~~~~~~~~~~~nkkeAeKviK~lIKi~vKigvL~rn~q 96 (172)
|+.+|.. +.+++..+.. +.++++||.+=+|.-.|...+--|-.-.|-+-.+++.+-++.+|+-+-+.
T Consensus 597 K~~lg~~-~~~li~~i~~~yG~~~a~~fl~~~~~l~~~~l~~~GfSigi~D~~~~~~~~~~~~~~i~~~~~~-------- 667 (868)
T TIGR02390 597 KKAIGAE-KGKILHRIVREYGPEAARRFLDSVTRLFIRFITLRGFTTGIDDIDIPKEAKEEIEELIEKAEKR-------- 667 (868)
T ss_pred HHHhccC-cccHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHhccEEeehhheeeCHHHHHHHHHHHHHHHHH--------
Confidence 7778776 4477765544 46788999999999988874444444455555555544444444433321
Q ss_pred CCHHHHHHHHHHHHHHHHhhHHHhhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy11482 97 FSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRHLTS 155 (172)
Q Consensus 97 f~~eEl~~~~~fr~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~lL~~lv~~HLT~ 155 (172)
++++.+.......+...-..++-+++. .+.+.|+++|+....++...+.+
T Consensus 668 --------~~~~~~~~~~g~l~~~~~~~~~~~~e~-~i~~~l~~~r~~~~~~~~~~l~~ 717 (868)
T TIGR02390 668 --------VDNLIERYRNGELEPLPGRTVEETLEM-KIMEVLGKARDEAGEVAEKYLDP 717 (868)
T ss_pred --------HHHHHHHHHcCCCccCcCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC
Confidence 112222222221111111112222332 24456777887777777777764
No 34
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=23.26 E-value=3.5e+02 Score=22.06 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhHH---Hhhh-ccccccccHHHHHHHHHHHHHHHHHHHhhcCC--cchhhhh-hHHHHhh
Q psy11482 96 QFSSTELTTCETLKAKFHTLLMS---LISF-YEVDFSYDAAYLIRQLTTLRSQLAGLLQRHLT--SKNLTNL-DNLYYCL 168 (172)
Q Consensus 96 qf~~eEl~~~~~fr~K~~~~amT---~iSF-~eVdfTfD~~~L~~~L~ecr~lL~~lv~~HLT--~KS~~Ri-~~vF~~~ 168 (172)
-.|+++++.++..-..+....-- +-+| .+=+..|=+++|.+-+.+.|.-+.-+++.-+. .|+..++ ..+|+++
T Consensus 29 tysp~~l~~i~~~~~~i~~~~~r~~eLk~lI~kk~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~Lf~~L 108 (142)
T TIGR03042 29 TYSPAQLAQIQRQAEGIEAAKDRLPELASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQKEALALAKELKDDL 108 (142)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcchHHHHHHHhccHHHHHHHHHHHHHccCHHhHHHHHHHHHHHHHHH
Confidence 45677777766655554433211 2222 25578999999999999999999997776652 3444444 7888888
Q ss_pred hhh
Q psy11482 169 KVL 171 (172)
Q Consensus 169 ~~~ 171 (172)
.+|
T Consensus 109 ~~L 111 (142)
T TIGR03042 109 EKL 111 (142)
T ss_pred HHH
Confidence 765
No 35
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=23.20 E-value=1.8e+02 Score=24.95 Aligned_cols=124 Identities=11% Similarity=0.127 Sum_probs=70.5
Q ss_pred hHHHHHHHHHhhhccccchhhhhcccchH-HhHHHHHHHHHH-------HhccccCCCCC---CCCCChHHHHHHHHHHH
Q psy11482 14 DLAMRVQKKLASKMSNKSMVKMYIDDRSG-RLLDNLYRVIKT-------YVSFRHQSGNG---KDTNNKKQSEKIIKTLI 82 (172)
Q Consensus 14 ~lalrAQKKllskmask~~~k~fIDDtss-~lLD~LYrl~K~-------yt~~~~~~~~~---~~~~nkkeAeKviK~lI 82 (172)
.-.+++=++|.....=..+..+-.-|.+. ++-..|-++... -+| .|.++.. +..++ .|-.+++-+-
T Consensus 44 ~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~G-D~~~~~~~~~~~~f~--~a~~Li~~i~ 120 (272)
T TIGR00676 44 DRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRG-DPPKGEGTPTPGGFN--YASELVEFIR 120 (272)
T ss_pred HHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCC-CCCCCCCCCCCCCCC--CHHHHHHHHH
Confidence 33444434444333223455544444444 455555555332 233 3333221 22233 5777777665
Q ss_pred HH--HHHHHhhh-cC-CCCCHHHHHHHHHHHHHHHHhhHHHhhhccccccccHHHHHHHHHHHHHH
Q psy11482 83 KI--IIKTTLLV-KN-HQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQ 144 (172)
Q Consensus 83 Ki--~vKigvL~-rn-~qf~~eEl~~~~~fr~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~l 144 (172)
+. -+.||+-. =. |.-.+...+.++.+++|....| .|--.-+-||.+.+.+.++.||..
T Consensus 121 ~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA----~f~iTQ~~fd~~~~~~~~~~~~~~ 182 (272)
T TIGR00676 121 NEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGA----DYAITQLFFDNDDYYRFVDRCRAA 182 (272)
T ss_pred HhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCC----CeEeeccccCHHHHHHHHHHHHHc
Confidence 54 34555443 11 2223333456788899999998 688889999999999999999885
No 36
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=23.07 E-value=2.6e+02 Score=21.75 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=31.6
Q ss_pred cchHHhHHHHHHHHHHHhccc-cCCCCCC--CCCChHHHHHHHHHHHHHH
Q psy11482 39 DRSGRLLDNLYRVIKTYVSFR-HQSGNGK--DTNNKKQSEKIIKTLIKII 85 (172)
Q Consensus 39 Dtss~lLD~LYrl~K~yt~~~-~~~~~~~--~~~nkkeAeKviK~lIKi~ 85 (172)
+-..++++..-.+-+.|+.++ |...++. ..+++..||..+|..=+++
T Consensus 73 ~~~e~~~~~~~~Le~~yi~srY~d~~~~~p~e~~~~~~ae~~l~~A~~v~ 122 (132)
T COG2250 73 EVPEEILECARELEKRYILSRYPDAEYEGPLELYSKEDAEELLKTAEKVL 122 (132)
T ss_pred cCcHHHHHHHHHHHHHHhHhcCccccccCccchhhHHHHHHHHHHHHHHH
Confidence 445556666667888888765 3334444 7788888888888765553
No 37
>PRK13676 hypothetical protein; Provisional
Probab=22.97 E-value=3.2e+02 Score=20.27 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHHHHHhhHHHhhhccccccccHHHHHHHHHHHHHHHHHH
Q psy11482 70 NKKQSEKIIKTLIKIIIKTTLLVKNHQ-FSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGL 148 (172)
Q Consensus 70 nkkeAeKviK~lIKi~vKigvL~rn~q-f~~eEl~~~~~fr~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~lL~~l 148 (172)
...+|++++++.-+.--.+--..+.++ .++++...++++.+++..-- .+-.|-+.+-- |..+|.+....+...
T Consensus 34 ~d~~a~~li~~F~~~q~~~~~~q~~g~~~~~e~~~~l~~l~~~i~~n~-~i~~y~~Ae~~-----l~~ll~~v~~iI~~~ 107 (114)
T PRK13676 34 ADEEAKKLFDEFRALQLEIQQKQMTGQEITEEEQQKAQELGQKIQQNE-LLSKLMEAEQR-----LSVYINDINKIIFKP 107 (114)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCH-HHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 567899999999888887766556666 78889999999988886532 33344444333 333555555555444
Q ss_pred H
Q psy11482 149 L 149 (172)
Q Consensus 149 v 149 (172)
|
T Consensus 108 i 108 (114)
T PRK13676 108 L 108 (114)
T ss_pred H
Confidence 3
No 38
>PF11001 DUF2841: Protein of unknown function (DUF2841); InterPro: IPR021264 This family of proteins with unknown function are all present in yeast.
Probab=22.70 E-value=46 Score=26.56 Aligned_cols=26 Identities=15% Similarity=0.292 Sum_probs=18.5
Q ss_pred ccchhhh-hcccchHHhHHHHHHHHHH
Q psy11482 29 NKSMVKM-YIDDRSGRLLDNLYRVIKT 54 (172)
Q Consensus 29 sk~~~k~-fIDDtss~lLD~LYrl~K~ 54 (172)
+.++... +.+-.-.++|||+|+|+++
T Consensus 99 ~~~~~~~~~~~~~k~~iL~EI~~V~~~ 125 (126)
T PF11001_consen 99 TQDVRRQFIKPPEKLEILDEIFKVRKM 125 (126)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHhc
Confidence 4445555 4555777899999999874
No 39
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=22.67 E-value=64 Score=23.55 Aligned_cols=16 Identities=31% Similarity=0.675 Sum_probs=13.6
Q ss_pred HHhHHHHHHHHHHHhc
Q psy11482 42 GRLLDNLYRVIKTYVS 57 (172)
Q Consensus 42 s~lLD~LYrl~K~yt~ 57 (172)
.+++|.|||+-|..-+
T Consensus 71 ~~if~~Lyr~qrr~r~ 86 (90)
T PF11808_consen 71 GEIFDRLYRLQRRNRK 86 (90)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5799999999998755
No 40
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=22.64 E-value=2.8e+02 Score=22.80 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=37.9
Q ss_pred ccccchhhhhcccchHHhHHHHHHHHHHHhccccCCCCCCCCCChHHHHHHHHHHHHH
Q psy11482 27 MSNKSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKI 84 (172)
Q Consensus 27 mask~~~k~fIDDtss~lLD~LYrl~K~yt~~~~~~~~~~~~~nkkeAeKviK~lIKi 84 (172)
|-.-++..|+.|-+..+-|+.||.++-..-. .-+=.+|+++..-+..+
T Consensus 17 ~~~Ggsl~~l~~~~~~~~l~~lY~~A~~ly~----------~G~l~~A~~~f~~L~~~ 64 (157)
T PRK15363 17 FRRGGSLRMLLDDDVTQPLNTLYRYAMQLME----------VKEFAGAARLFQLLTIY 64 (157)
T ss_pred HHcCCcHHHHHCCChHHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHh
Confidence 3367888999999989999999999887655 11467999988877664
No 41
>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals [].
Probab=22.33 E-value=2.6e+02 Score=23.88 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhhhcC---CCCCHHHHHHHHHHHHHHHHhhHHHhhhc
Q psy11482 75 EKIIKTLIKIIIKTTLLVKN---HQFSSTELTTCETLKAKFHTLLMSLISFY 123 (172)
Q Consensus 75 eKviK~lIKi~vKigvL~rn---~qf~~eEl~~~~~fr~K~~~~amT~iSF~ 123 (172)
.|-||.-+.+++++||=-.. +|=++.=.+-+-++|+=+|. |-|=-|.
T Consensus 67 ~keikTW~~La~~LGVepp~~ek~qStQKvqQYaVRLKRWM~a--MHVDAFF 116 (175)
T PF09441_consen 67 SKEIKTWAQLALELGVEPPDPEKGQSTQKVQQYAVRLKRWMRA--MHVDAFF 116 (175)
T ss_pred hhhHhHHHHHHHHhCCCCCCcccccchHHHHHHHHHHHHHHHH--hhHHHHH
Confidence 36799999999999998877 88888888888899888884 5554454
No 42
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=22.13 E-value=1.1e+02 Score=24.87 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=36.3
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHhhH--HHhhhccccccccHHHHHHHHH-HHHHHHHHHHh
Q psy11482 90 LLVKNHQFSSTELTTCETLKAKFHTLLM--SLISFYEVDFSYDAAYLIRQLT-TLRSQLAGLLQ 150 (172)
Q Consensus 90 vL~rn~qf~~eEl~~~~~fr~K~~~~am--T~iSF~eVdfTfD~~~L~~~L~-ecr~lL~~lv~ 150 (172)
++.+.++|+.+|...++.+++-|..-++ |+|=|..-|..-+.. +.+.+. ++...|.++++
T Consensus 89 lVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~-~~~~l~~~~~~~l~~li~ 151 (212)
T PF04548_consen 89 LVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDS-LEDYLKKESNEALQELIE 151 (212)
T ss_dssp EEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT-HHHHHHHHHHHHHHHHHH
T ss_pred EEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccccc-HHHHHhccCchhHhHHhh
Confidence 4566679999999999999998876432 334344333333322 555555 34455666665
No 43
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=21.67 E-value=2.1e+02 Score=25.11 Aligned_cols=72 Identities=14% Similarity=0.026 Sum_probs=48.0
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHHHHhhHHHhhhccccccccHHHHHHHHHHHHHHH-----HHHHhhcCCcchhhhhh
Q psy11482 88 TTLLVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQL-----AGLLQRHLTSKNLTNLD 162 (172)
Q Consensus 88 igvL~rn~qf~~eEl~~~~~fr~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~lL-----~~lv~~HLT~KS~~Ri~ 162 (172)
++.---.|.-.+.....++.+++|+...| .|--.-+-||.+.+.+.++.|+..- ..=|-+-.+-++..|+.
T Consensus 149 va~yPeghp~~~~~~~dl~~Lk~K~~aGA----~~~iTQ~~Fd~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~ 224 (296)
T PRK09432 149 VAAYPEVHPEAKSAQADLINLKRKVDAGA----NRAITQFFFDVESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFA 224 (296)
T ss_pred eeeCCCCCCCCCCHHHHHHHHHHHHHcCC----CeeecccccchHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHH
Confidence 34444444444443344557999999998 6888899999999999999999863 22233445555555554
Q ss_pred H
Q psy11482 163 N 163 (172)
Q Consensus 163 ~ 163 (172)
+
T Consensus 225 ~ 225 (296)
T PRK09432 225 D 225 (296)
T ss_pred H
Confidence 3
No 44
>PF07133 Merozoite_SPAM: Merozoite surface protein (SPAM); InterPro: IPR010784 This entry consists of several Plasmodium falciparum SPAM (secreted polymorphic antigen associated with merozoites) proteins, also know as merozoite surface proteins. Variation among SPAM alleles is the result of deletions and amino acid substitutions in non-repetitive sequences within and flanking the alanine heptad-repeat domain. Heptad repeats in which the a and d position contain hydrophobic residues generate amphipathic alpha-helices which give rise to helical bundles or coiled-coil structures in proteins. SPAM is an example of a P. falciparum antigen in which a repetitive sequence has features characteristic of a well-defined structural element [,].
Probab=21.50 E-value=92 Score=26.22 Aligned_cols=36 Identities=25% Similarity=0.423 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHh
Q psy11482 70 NKKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHTL 115 (172)
Q Consensus 70 nkkeAeKviK~lIKi~vKigvL~rn~qf~~eEl~~~~~fr~K~~~~ 115 (172)
.||.|+.++|.||.++ --++++. ..+..|..-++++
T Consensus 134 ~KK~ae~lvktLisL~------~~~n~~d----~tik~l~~Dm~qf 169 (173)
T PF07133_consen 134 IKKVAEALVKTLISLL------SGDNSVD----DTIKNLAQDMNQF 169 (173)
T ss_pred HHHHHHHHHHHHHHHH------cCCcchH----HHHHHHHHHHHHH
Confidence 6899999999998654 4444433 2344444444443
No 45
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=21.14 E-value=1.1e+02 Score=25.26 Aligned_cols=36 Identities=6% Similarity=0.001 Sum_probs=26.7
Q ss_pred CCChHHHHHHHHHHHHHHHH---------HHhhhcCC---CCCHHHHH
Q psy11482 68 TNNKKQSEKIIKTLIKIIIK---------TTLLVKNH---QFSSTELT 103 (172)
Q Consensus 68 ~~nkkeAeKviK~lIKi~vK---------igvL~rn~---qf~~eEl~ 103 (172)
.++..||.+++++.++.+.+ ++++-+++ .++++|++
T Consensus 176 ~ms~eeai~l~~~~l~~~~~~~l~~~~iev~iv~~~~~~~~~~~~ei~ 223 (227)
T cd03750 176 DLELEDAIHTAILTLKEGFEGQMTEKNIEIGICGETKGFRLLTPAEIK 223 (227)
T ss_pred CCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCEEECCHHHHH
Confidence 46899999999999998777 67776543 25666654
No 46
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=20.67 E-value=3.1e+02 Score=19.28 Aligned_cols=34 Identities=6% Similarity=0.132 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q psy11482 71 KKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKA 110 (172)
Q Consensus 71 kkeAeKviK~lIKi~vKigvL~rn~qf~~eEl~~~~~fr~ 110 (172)
..+-+.++..++.+ .+-++++++.|...++++-+
T Consensus 69 ~~~r~~~l~~L~~v------A~ADG~~~~~E~~~l~~ia~ 102 (104)
T cd07313 69 YEERLELVEALWEV------AYADGELDEYEEHLIRRVAD 102 (104)
T ss_pred HHHHHHHHHHHHHH------HHhcCCCCHHHHHHHHHHHh
Confidence 44555566666544 36699999999999987643
No 47
>PF13971 Mei4: Meiosis-specific protein Mei4
Probab=20.44 E-value=3.3e+02 Score=25.58 Aligned_cols=78 Identities=13% Similarity=0.130 Sum_probs=47.3
Q ss_pred hcccchHHhHHHHHHHHHHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhc-CCCCCHHHHHHHHHHHHHHHH
Q psy11482 36 YIDDRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTTLLVK-NHQFSSTELTTCETLKAKFHT 114 (172)
Q Consensus 36 fIDDtss~lLD~LYrl~K~yt~~~~~~~~~~~~~nkkeAeKviK~lIKi~vKigvL~r-n~qf~~eEl~~~~~fr~K~~~ 114 (172)
-|+|...++||-|-...+. |--+ -+ --.=....+.+++++++-=... ++.+..+-...+|+|.+-+-+
T Consensus 164 ~i~dSv~qlLd~l~~f~~~-----pk~~-----~p-l~~s~~~~~av~~la~~i~~~~l~~~~~k~~~kkleEf~ktL~q 232 (375)
T PF13971_consen 164 TIEDSVSQLLDGLIVFYRS-----PKVL-----FP-LPFSSFLTEAVKVLAQLIDDFNLSNHILKECSKKLEEFEKTLLQ 232 (375)
T ss_pred chhhHHHHHHHHHHHHhcC-----cccc-----CC-CCchHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHH
Confidence 3589999999988766532 2000 00 1222334455666666544433 344777888888888888888
Q ss_pred hhHHHhhhcc
Q psy11482 115 LLMSLISFYE 124 (172)
Q Consensus 115 ~amT~iSF~e 124 (172)
+.+.--++-.
T Consensus 233 ~IL~~~~inr 242 (375)
T PF13971_consen 233 LILRNSSINR 242 (375)
T ss_pred HHHhhhhhhh
Confidence 8776555443
No 48
>PRK09562 mazG nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=20.42 E-value=4.9e+02 Score=22.72 Aligned_cols=86 Identities=8% Similarity=0.122 Sum_probs=49.2
Q ss_pred HHHHHHHHhhhccccchhhhhcccchHHhHHHHHHHHHHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcCC
Q psy11482 16 AMRVQKKLASKMSNKSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTTLLVKNH 95 (172)
Q Consensus 16 alrAQKKllskmask~~~k~fIDDtss~lLD~LYrl~K~yt~~~~~~~~~~~~~nkkeAeKviK~lIKi~vKigvL~rn~ 95 (172)
-+|||| |..|-+..+.---=+++-...+..++|.+...+... +....+.-+=+++=.+|-++- -.
T Consensus 144 L~~a~K-iqkrAa~~Gf~w~~~~~~~~kl~EE~~El~~Ai~~~-----------~~~~l~eElGDlLf~lv~lAr---~~ 208 (262)
T PRK09562 144 LMRAYK-IQKKAARVGFDWESLEPVLDKVEEEIDELKEALAQG-----------DQAKIEEEFGDLLFALVNLAR---HL 208 (262)
T ss_pred HHHHHH-HHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHcc-----------ChhhHHHHHHHHHHHHHHHHH---Hc
Confidence 567877 666765555322212223345667888888877541 233334445555555554444 44
Q ss_pred CCCHHHH--HHHHHHHHHHHHhh
Q psy11482 96 QFSSTEL--TTCETLKAKFHTLL 116 (172)
Q Consensus 96 qf~~eEl--~~~~~fr~K~~~~a 116 (172)
.|++|+. ...++|.+++..+-
T Consensus 209 ~id~E~aL~~a~~Kf~rR~~~vE 231 (262)
T PRK09562 209 GIDPEAALRKANAKFERRFRAVE 231 (262)
T ss_pred CCCHHHHHHHHHHHHHHhHHHHH
Confidence 5999864 44677878777653
No 49
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=20.42 E-value=2.8e+02 Score=22.38 Aligned_cols=32 Identities=31% Similarity=0.541 Sum_probs=26.8
Q ss_pred hHHhHHHHHHHHHHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHH
Q psy11482 41 SGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIK 87 (172)
Q Consensus 41 ss~lLD~LYrl~K~yt~~~~~~~~~~~~~nkkeAeKviK~lIKi~vK 87 (172)
....|..||.+.+ + +|+.=.|.+++|+|..--
T Consensus 110 ~~~~l~~ly~ll~---~------------~r~~R~~Fl~~l~k~f~~ 141 (187)
T PF12830_consen 110 PSAFLSRLYSLLR---S------------NRKSRRKFLKSLLKQFDF 141 (187)
T ss_pred chHHHHHHHHHHh---c------------ccHhHHHHHHHHHHHHHh
Confidence 6789999999988 3 788889999999997654
No 50
>PRK03996 proteasome subunit alpha; Provisional
Probab=20.33 E-value=1.2e+02 Score=25.04 Aligned_cols=36 Identities=6% Similarity=0.046 Sum_probs=26.6
Q ss_pred CCChHHHHHHHHHHHHHHHH---------HHhhhcCCC----CCHHHHH
Q psy11482 68 TNNKKQSEKIIKTLIKIIIK---------TTLLVKNHQ----FSSTELT 103 (172)
Q Consensus 68 ~~nkkeAeKviK~lIKi~vK---------igvL~rn~q----f~~eEl~ 103 (172)
.++.+||.++++..++.+.+ |+++.+++. ++++|++
T Consensus 185 ~~s~eeai~l~~~al~~~~~~~~~~~~i~i~ii~~~~~~~~~~~~~ei~ 233 (241)
T PRK03996 185 DLSLEEAIELALKALAKANEGKLDPENVEIAYIDVETKKFRKLSVEEIE 233 (241)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCcEEECCHHHHH
Confidence 46889999999999998876 667766652 6666653
No 51
>cd07353 harmonin_N N-terminal protein-binding module of harmonin. Harmonin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. Harmonin contains a single copy of this domain, which is found at the N-terminus of all three harmonin isoform classes (a, b and c), and which preceeds the first PDZ protein-binding domain, PDZ1. This harmonin_N domain binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network.
Probab=20.28 E-value=85 Score=23.52 Aligned_cols=27 Identities=30% Similarity=0.603 Sum_probs=21.8
Q ss_pred ccchhhhhcccchHHhHHHHHHHHHHHhc
Q psy11482 29 NKSMVKMYIDDRSGRLLDNLYRVIKTYVS 57 (172)
Q Consensus 29 sk~~~k~fIDDtss~lLD~LYrl~K~yt~ 57 (172)
.+.-+...|||.+-. |.||.+.|.|-.
T Consensus 8 fr~kV~~~ie~EaEk--d~lY~~Lr~YHq 34 (79)
T cd07353 8 FRHKVELLIDNEAEK--DYLYDVLRMYHQ 34 (79)
T ss_pred HHHHHHHhhccHHHH--HHHHHHHHHHHh
Confidence 345577889988765 899999999965
Done!