Query psy11482
Match_columns 172
No_of_seqs 79 out of 81
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 19:34:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11482.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11482hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f4m_A Tumor necrosis factor, 100.0 4.3E-63 1.5E-67 399.8 14.5 129 30-170 1-129 (161)
2 3ay5_A Cyclin-D1-binding prote 56.7 98 0.0033 26.8 12.5 108 41-152 21-140 (360)
3 2oeq_A Protein of unknown func 53.0 42 0.0014 24.4 6.4 77 70-152 37-114 (122)
4 1wr6_A ADP-ribosylation factor 39.2 48 0.0016 24.5 4.8 58 93-152 28-85 (111)
5 3hrs_A Metalloregulator SCAR; 37.3 94 0.0032 24.1 6.6 79 79-169 38-120 (214)
6 1wrd_A TOM1, target of MYB pro 35.6 1.2E+02 0.0042 21.7 9.7 78 72-152 6-89 (103)
7 1naf_A ADP-ribosylation factor 31.3 1.5E+02 0.0052 23.1 6.8 50 101-152 89-138 (158)
8 2iaz_A Hypothetical protein SP 31.3 1E+02 0.0035 21.6 5.4 74 70-149 34-108 (113)
9 2au5_A Conserved domain protei 30.1 1.3E+02 0.0046 23.3 6.1 52 33-118 70-125 (139)
10 2gsc_A Putative uncharacterize 24.3 2.1E+02 0.007 20.8 7.3 50 32-95 11-60 (128)
11 3q8g_A CRAL-TRIO domain-contai 22.9 1.5E+02 0.0052 24.5 5.7 64 94-165 32-98 (320)
12 2p5i_A BH3822 protein; PFAM030 22.3 1.3E+02 0.0046 24.5 5.2 41 74-114 232-272 (288)
13 2a6h_D DNA-directed RNA polyme 22.1 2.8E+02 0.0094 29.2 8.4 88 39-154 925-1012(1524)
14 3lqv_P Splicing factor 3B subu 20.8 39 0.0013 21.4 1.3 15 91-105 17-31 (39)
15 1aua_A Phosphatidylinositol tr 20.6 1.5E+02 0.0051 23.6 5.1 63 95-165 24-89 (296)
16 2qq9_A Diphtheria toxin repres 20.2 3E+02 0.01 21.2 8.2 103 41-167 8-122 (226)
17 1twf_A B220, DNA-directed RNA 20.2 3.6E+02 0.012 28.5 8.9 113 21-155 619-739 (1733)
No 1
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.3e-63 Score=399.76 Aligned_cols=129 Identities=35% Similarity=0.585 Sum_probs=121.3
Q ss_pred cchhhhhcccchHHhHHHHHHHHHHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q psy11482 30 KSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLK 109 (172)
Q Consensus 30 k~~~k~fIDDtss~lLD~LYrl~K~yt~~~~~~~~~~~~~nkkeAeKviK~lIKi~vKigvL~rn~qf~~eEl~~~~~fr 109 (172)
|++|++||||||+||||||||++|+||+ ||||||||+|||||++||||||+||+|||+||++.+++||
T Consensus 1 k~va~~fIDdtsselLD~lyrl~K~~t~------------nkkeA~kv~KniIKi~vKigvl~rn~qf~~eEl~~~~~fr 68 (161)
T 3f4m_A 1 RSVAHLFIDETSSEVLDELYRVSKEYTH------------SRPQAQRVIKDLIKVAIKVAVLHRNGSFGPSELALATRFR 68 (161)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHS------------CHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CchhHHhcCccHHHHHHHHHHHHHHHhc------------CHHHHHHHHHHHHHHHHHhheeeecCCCCHHHHHHHHHHH
Confidence 6899999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHhhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHhhhh
Q psy11482 110 AKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRHLTSKNLTNLDNLYYCLKV 170 (172)
Q Consensus 110 ~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~lL~~lv~~HLT~KS~~Ri~~vF~~~~~ 170 (172)
+|||++|||+|||||||||||+.||+++|.|||++|+++|+||||||||+||||||+||++
T Consensus 69 ~k~~~~amt~iSF~eVdfTfD~~~L~~~L~ec~~lL~~lv~~HLT~KS~~Ri~~vF~~f~~ 129 (161)
T 3f4m_A 69 QKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLELVEHHLTPKSHGRIRHVFDHFSD 129 (161)
T ss_dssp HHHHHHHHHHHHHTSTTSCCCHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhhccCccccHHHHHHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999986
No 2
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens}
Probab=56.72 E-value=98 Score=26.78 Aligned_cols=108 Identities=9% Similarity=0.112 Sum_probs=58.5
Q ss_pred hHHhHHHHHHHHHHHhccccCCCCCCCCCCh----HHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhh
Q psy11482 41 SGRLLDNLYRVIKTYVSFRHQSGNGKDTNNK----KQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHTLL 116 (172)
Q Consensus 41 ss~lLD~LYrl~K~yt~~~~~~~~~~~~~nk----keAeKviK~lIKi~vKigvL~rn~qf~~eEl~~~~~fr~K~~~~a 116 (172)
+..|..+|-.+.-.-..+.|+... ++.|. .+..+..+.|=.=+-|+|+++. +.++|+-. .+.++=.-+.+..
T Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~~--~~f~~~~~~~~l~~~a~~l~~~aTKlsLl~~-~~p~Ps~~-~~~~~~~~~~~~l 96 (360)
T 3ay5_A 21 LRHLAEELRLLLPRVRVGEAQETT--EEFNREMFWRRLNEAAVTVSREATTLTIVFS-QLPLPSPQ-ETQKFCEQVHAAI 96 (360)
T ss_dssp HHHHHHHHHTHHHHHHSCCC---C--CSCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSSCCCHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCCc--ccCCccchHHHHHHHHHHHHhhhHHhhhhcc-CCCCCCHH-HHHHHHHHHHHHH
Confidence 556666666665544443332222 24566 5778888888888999999994 44566421 2233333333222
Q ss_pred HHHhh-hcccc----ccccH---HHHHHHHHHHHHHHHHHHhhc
Q psy11482 117 MSLIS-FYEVD----FSYDA---AYLIRQLTTLRSQLAGLLQRH 152 (172)
Q Consensus 117 mT~iS-F~eVd----fTfD~---~~L~~~L~ecr~lL~~lv~~H 152 (172)
.++++ ||... .||-+ ....+++.++++++..++.-.
T Consensus 97 ~~l~s~~~~~~~~~g~tl~~~i~~~v~~vl~~~~~L~~~i~~~~ 140 (360)
T 3ay5_A 97 KAFIAVYYLLPKDQGITLRKLVRGATLDIVDGMAQLMEVLSVTP 140 (360)
T ss_dssp HHHHHHHTTSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22222 23322 33333 345567888888888887643
No 3
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=53.00 E-value=42 Score=24.36 Aligned_cols=77 Identities=6% Similarity=0.053 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHHHHHhhHHHhhhccccccccHHHHHHHHHHHHHHHHHH
Q psy11482 70 NKKQSEKIIKTLIKIIIKTTLLVKNHQ-FSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGL 148 (172)
Q Consensus 70 nkkeAeKviK~lIKi~vKigvL~rn~q-f~~eEl~~~~~fr~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~lL~~l 148 (172)
..++|++++++.-+.-..+--..+.++ +++|+...++++.+++..-- .|..|-+-+-. |..+|++....+...
T Consensus 37 ~D~ea~~li~~F~~~q~~~q~~q~~G~~~~~e~~~~l~~l~~~l~~n~-~v~~~~~Ae~~-----l~~ll~~I~~iI~~~ 110 (122)
T 2oeq_A 37 RDETAYRMFANVRDIQLRLHEKQMRGAAILPDEIEQAQKAMALAQQNE-KLARLMALEQQ-----MSITIAEVQQIAMKP 110 (122)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTSH-HHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCH-HHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 567999999999999999988888885 99999999999988887543 34444444333 445666666666665
Q ss_pred Hhhc
Q psy11482 149 LQRH 152 (172)
Q Consensus 149 v~~H 152 (172)
|...
T Consensus 111 i~~~ 114 (122)
T 2oeq_A 111 LEEL 114 (122)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 4
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=39.17 E-value=48 Score=24.49 Aligned_cols=58 Identities=10% Similarity=0.037 Sum_probs=44.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhHHHhhhccccccccHHHHHHHHHHHHHHHHHHHhhc
Q psy11482 93 KNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRH 152 (172)
Q Consensus 93 rn~qf~~eEl~~~~~fr~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~lL~~lv~~H 152 (172)
+.+.-++.|.+++.++-..|+..--++..+-+-. +-|-..|.++|. +.|.|.+++++|
T Consensus 28 ~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~~e~-~ddde~l~elL~-~ND~ln~vi~rY 85 (111)
T 1wr6_A 28 SQEDSSDGDRELMKELFDQCENKRRTLFKLASET-EDNDNSLGDILQ-ASDNLSRVINSY 85 (111)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CTTCSSHHHHHH-HHHHHHHHHTHH
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHH-HhHHHHHHHHHH
Confidence 4456678888999999999999999998888421 234455766665 899999999987
No 5
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=37.27 E-value=94 Score=24.12 Aligned_cols=79 Identities=18% Similarity=0.309 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhhcCC----CCCHHHHHHHHHHHHHHHHhhHHHhhhccccccccHHHHHHHHHHHHHHHHHHHhhcCC
Q psy11482 79 KTLIKIIIKTTLLVKNH----QFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRHLT 154 (172)
Q Consensus 79 K~lIKi~vKigvL~rn~----qf~~eEl~~~~~fr~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~lL~~lv~~HLT 154 (172)
-.++|-..+-|++.|.. .+|++=.+.++++.++-+.+-.-++..-+ ++.+ +. ......++++++
T Consensus 38 s~~l~~Le~~GlV~r~~~~~i~LT~~G~~~~~~~~~~h~~~e~~l~~~lg--~~~~---------e~-~~~a~~lEh~~s 105 (214)
T 3hrs_A 38 TEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSDLYRKHRLIEVFLVHHLG--YTTE---------EI-HEEAEVLEHTVS 105 (214)
T ss_dssp HHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHHHHHHHHHHHHHTTC--CCHH---------HH-HHHHHHHHTTSC
T ss_pred HHHHHHHHHCCCEEEecCCCeEECHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHH---------HH-HHHHHHHhccCC
Confidence 34455555679998776 48999888888888875533332222222 2222 12 334567899999
Q ss_pred cchhhhhhHHHHhhh
Q psy11482 155 SKNLTNLDNLYYCLK 169 (172)
Q Consensus 155 ~KS~~Ri~~vF~~~~ 169 (172)
+++..|++..++|..
T Consensus 106 ~~~~~~l~~~l~~p~ 120 (214)
T 3hrs_A 106 DHFVERLDQLLDYPK 120 (214)
T ss_dssp HHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999887653
No 6
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=35.60 E-value=1.2e+02 Score=21.74 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh------hcCCCCCHHHHHHHHHHHHHHHHhhHHHhhhccccccccHHHHHHHHHHHHHHH
Q psy11482 72 KQSEKIIKTLIKIIIKTTLL------VKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQL 145 (172)
Q Consensus 72 keAeKviK~lIKi~vKigvL------~rn~qf~~eEl~~~~~fr~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~lL 145 (172)
.+..|+...|=++--++-+| +..+.-++.+.+.+.++-..|+..--++..+-+. +=|-..|.++|. ..|-|
T Consensus 6 eq~~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~--~~dee~l~~lL~-~ND~L 82 (103)
T 1wrd_A 6 EQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQ--IANEQLTEELLI-VNDNL 82 (103)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHH-hhHHH
Confidence 34445555555555555443 2344555677889999999998888888887763 246666766665 99999
Q ss_pred HHHHhhc
Q psy11482 146 AGLLQRH 152 (172)
Q Consensus 146 ~~lv~~H 152 (172)
.+++.+|
T Consensus 83 ~~vl~ry 89 (103)
T 1wrd_A 83 NNVFLRH 89 (103)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998886
No 7
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=31.33 E-value=1.5e+02 Score=23.15 Aligned_cols=50 Identities=10% Similarity=0.064 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhccccccccHHHHHHHHHHHHHHHHHHHhhc
Q psy11482 101 ELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRH 152 (172)
Q Consensus 101 El~~~~~fr~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~lL~~lv~~H 152 (172)
+.+++.++-..|++.--++..+-+-. +-|-..|.++|. ..|.|.+++.+|
T Consensus 89 d~Ell~eL~~~Ck~~qp~i~~Li~e~-~ddee~L~elL~-~ND~Ln~vl~kY 138 (158)
T 1naf_A 89 SEDLMKELYQRCERMRPTLFRLASDT-EDNDEALAEILQ-ANDNLTQVINLY 138 (158)
T ss_dssp CTTHHHHHHHHHHTHHHHHHHHHHHC-CSCHHHHHHHHH-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHc-cCCHHHHHHHHH-hhHHHHHHHHHH
Confidence 55677777777777777777766422 345555655554 667777777665
No 8
>2iaz_A Hypothetical protein SP1372; structural genomics, PSI-2, protei structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: a.281.1.2
Probab=31.32 E-value=1e+02 Score=21.55 Aligned_cols=74 Identities=12% Similarity=0.107 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHHHHHhhHHHhhhccccccccHHHHHHHHHHHHHHHHHH
Q psy11482 70 NKKQSEKIIKTLIKIIIKTTLLVKNHQ-FSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGL 148 (172)
Q Consensus 70 nkkeAeKviK~lIKi~vKigvL~rn~q-f~~eEl~~~~~fr~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~lL~~l 148 (172)
..++|++++++.-+.--.+--..+.++ .++++...++++.+++...- .|..|-+-+.. |..+|++....+..-
T Consensus 34 ~d~ea~~l~~~f~~~q~~~~~~q~~G~~~~~e~~~~~~~l~~~i~~~p-~v~~y~~Ae~~-----l~~ll~~I~~~I~~~ 107 (113)
T 2iaz_A 34 ADAEASKIFTDYLAFQEEIQKLAQTGQMPDASFQAKMEGFGKQIQGNS-LLSEFFTKQQQ-----LAIYLSDIEKIVFEP 107 (113)
T ss_dssp HCHHHHHHHHHHHHHGGGTTTTCC----CCHHHHHHHHHHHHHHHTCH-HHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCH-HHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 467899999999998888887777885 78888888888888877643 33344433322 333444444444443
Q ss_pred H
Q psy11482 149 L 149 (172)
Q Consensus 149 v 149 (172)
|
T Consensus 108 i 108 (113)
T 2iaz_A 108 V 108 (113)
T ss_dssp H
T ss_pred H
Confidence 3
No 9
>2au5_A Conserved domain protein; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.10A {Enterococcus faecalis} SCOP: a.244.1.1
Probab=30.11 E-value=1.3e+02 Score=23.31 Aligned_cols=52 Identities=23% Similarity=0.399 Sum_probs=41.4
Q ss_pred hhhhccc----chHHhHHHHHHHHHHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q psy11482 33 VKMYIDD----RSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETL 108 (172)
Q Consensus 33 ~k~fIDD----tss~lLD~LYrl~K~yt~~~~~~~~~~~~~nkkeAeKviK~lIKi~vKigvL~rn~qf~~eEl~~~~~f 108 (172)
+..++|| .+.+|.|++-++.+.|-. .|...+++.|-.+--.+
T Consensus 70 V~SL~~~~N~~~~~~L~~E~~~Li~LY~~----------------------------------~~~~~LT~N~~~L~~~i 115 (139)
T 2au5_A 70 VQSLLEDENFSSVEQLKGELARLIRLYFA----------------------------------LAKDNLTENQESLYVDL 115 (139)
T ss_dssp HHHHTTCTTCSSHHHHHHHHHHHHHHHHH----------------------------------HHTTCCCHHHHHHHHHH
T ss_pred HHHHhccCCcCcHHHHHHHHHHHHHHHHH----------------------------------HHHhhccccchhhhhhH
Confidence 3445554 578899999999999976 35678999999999999
Q ss_pred HHHHHHhhHH
Q psy11482 109 KAKFHTLLMS 118 (172)
Q Consensus 109 r~K~~~~amT 118 (172)
.+||-.+.++
T Consensus 116 ~DKF~~LLL~ 125 (139)
T 2au5_A 116 FDKFTFLLLC 125 (139)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9999877665
No 10
>2gsc_A Putative uncharacterized protein XCC0516; four-helix bundle, homopentamer, pentameric toroid, unknown function; 2.45A {Xanthomonas campestris PV} SCOP: a.29.16.1
Probab=24.34 E-value=2.1e+02 Score=20.79 Aligned_cols=50 Identities=10% Similarity=0.163 Sum_probs=34.0
Q ss_pred hhhhhcccchHHhHHHHHHHHHHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcCC
Q psy11482 32 MVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTTLLVKNH 95 (172)
Q Consensus 32 ~~k~fIDDtss~lLD~LYrl~K~yt~~~~~~~~~~~~~nkkeAeKviK~lIKi~vKigvL~rn~ 95 (172)
.=++-|=..+-++...+|++++.+ ++.+---+.+.|..-.+=|+.-..-+
T Consensus 11 ~~~L~v~qka~~la~~i~~l~~~f--------------p~~e~~~L~~Qi~Rsa~SI~aNIaEg 60 (128)
T 2gsc_A 11 HERLDAWRDSMELVEMIYRLTEVF--------------PDQERYGLTAQLRRAAVSIPSNIAEG 60 (128)
T ss_dssp GGGCHHHHHHHHHHHHHHHHGGGS--------------CGGGTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHhc--------------chHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 334555566778888888888865 34455567788888888777766443
No 11
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=22.89 E-value=1.5e+02 Score=24.51 Aligned_cols=64 Identities=6% Similarity=0.039 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhHHHhhhccccccccHHHHHHHHHHHH---HHHHHHHhhcCCcchhhhhhHHH
Q psy11482 94 NHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLR---SQLAGLLQRHLTSKNLTNLDNLY 165 (172)
Q Consensus 94 n~qf~~eEl~~~~~fr~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr---~lL~~lv~~HLT~KS~~Ri~~vF 165 (172)
-+.+|++|.+.+++||+.+...-. ..-.|..+|.+-|.-++ +.-.+.++.+|+=...-++|.+|
T Consensus 32 ~~~lt~~q~~~l~~lR~~l~~~~~--------~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~ 98 (320)
T 3q8g_A 32 PGNLTKEQEEALLQFRSILLEKNY--------KERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTII 98 (320)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHTTC--------CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCC--------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccc
Confidence 467888888888888888876531 11346667776665443 22333444444433334444444
No 12
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3
Probab=22.27 E-value=1.3e+02 Score=24.51 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Q psy11482 74 SEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHT 114 (172)
Q Consensus 74 AeKviK~lIKi~vKigvL~rn~qf~~eEl~~~~~fr~K~~~ 114 (172)
.+.+...+++-..+.+.-..-..+++||++.++++.+++..
T Consensus 232 ~~~v~~~l~~~f~~~~~~~~~~~lt~~e~~~~~~~~~~~~~ 272 (288)
T 2p5i_A 232 VSDVLLKALMTLQQHGASLLTESLSADEWLLYEQHFARISE 272 (288)
T ss_dssp HHHHHHHHHHHHHHTTCCCEECCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCceecCCCHHHHHHHHHHHHHHHH
Confidence 45555566666666654455688999999999988887754
No 13
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Probab=22.05 E-value=2.8e+02 Score=29.19 Aligned_cols=88 Identities=13% Similarity=0.166 Sum_probs=58.8
Q ss_pred cchHHhHHHHHHHHHHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhhHH
Q psy11482 39 DRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHTLLMS 118 (172)
Q Consensus 39 Dtss~lLD~LYrl~K~yt~~~~~~~~~~~~~nkkeAeKviK~lIKi~vKigvL~rn~qf~~eEl~~~~~fr~K~~~~amT 118 (172)
+.++.+||.+-++.-.|....--|-.-.|..-.++-+++++..-+-+-++---|+++.++.+|.
T Consensus 925 ~~t~~fLD~lk~Lg~~~lt~~GfSIGI~Dlii~~~K~eiI~eA~~~v~~i~~~y~~G~lt~~Er---------------- 988 (1524)
T 2a6h_D 925 EKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEKKQYLEEADRKLLQIEQAYEMGFLTDRER---------------- 988 (1524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCSTTSCCCTTHHHHHHHHHHHHHHHHHHHHTTCSCHHHH----------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceeehhhccCCHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH----------------
Confidence 6788999999999888876554554555655555567777777776666666777777776542
Q ss_pred HhhhccccccccHHHHHHHHHHHHHHHHHHHhhcCC
Q psy11482 119 LISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRHLT 154 (172)
Q Consensus 119 ~iSF~eVdfTfD~~~L~~~L~ecr~lL~~lv~~HLT 154 (172)
|++ +.+.++.+++.+...+..+|.
T Consensus 989 ----------~~~--Vi~iw~~a~d~v~~~~~~~L~ 1012 (1524)
T 2a6h_D 989 ----------YDQ--ILQLWTETTEKVTQAVFKNFE 1012 (1524)
T ss_dssp ----------HHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 111 335566777777777776665
No 14
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=20.82 E-value=39 Score=21.45 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=12.2
Q ss_pred hhcCCCCCHHHHHHH
Q psy11482 91 LVKNHQFSSTELTTC 105 (172)
Q Consensus 91 L~rn~qf~~eEl~~~ 105 (172)
=-||..+|+|||..+
T Consensus 17 ~~RNrpltDEeLD~m 31 (39)
T 3lqv_P 17 DERNRPLSDEELDAM 31 (39)
T ss_dssp HHTTCCCCHHHHHHT
T ss_pred hhhcCCCCHHHHHHh
Confidence 359999999999753
No 15
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=20.65 E-value=1.5e+02 Score=23.61 Aligned_cols=63 Identities=11% Similarity=0.074 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhHHHhhhccccccccHHHHHHHHHHHH---HHHHHHHhhcCCcchhhhhhHHH
Q psy11482 95 HQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLR---SQLAGLLQRHLTSKNLTNLDNLY 165 (172)
Q Consensus 95 ~qf~~eEl~~~~~fr~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr---~lL~~lv~~HLT~KS~~Ri~~vF 165 (172)
+.++++|.+.+++||+.+..-- ..--.|..+|.+-|.-|+ +.-.+.+..||+=...-+++++|
T Consensus 24 ~~l~~~q~~~l~~lr~~l~~~~--------~~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~ 89 (296)
T 1aua_A 24 GNLDSAQEKALAELRKLLEDAG--------FIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTIL 89 (296)
T ss_dssp TTCCTTHHHHHHHHHHHHHHTT--------CCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcC--------CCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhh
Confidence 4577788888888888776532 112245666666665443 22333344444444333444444
No 16
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=20.15 E-value=3e+02 Score=21.21 Aligned_cols=103 Identities=13% Similarity=0.147 Sum_probs=62.1
Q ss_pred hHHhHHHHHHHHHHHhccccCCCCCCCCCC--hHHHHHH------HHHHHHHHHHHHhhhcCC----CCCHHHHHHHHHH
Q psy11482 41 SGRLLDNLYRVIKTYVSFRHQSGNGKDTNN--KKQSEKI------IKTLIKIIIKTTLLVKNH----QFSSTELTTCETL 108 (172)
Q Consensus 41 ss~lLD~LYrl~K~yt~~~~~~~~~~~~~n--kkeAeKv------iK~lIKi~vKigvL~rn~----qf~~eEl~~~~~f 108 (172)
....|..||.+.++-.. . +.-|+.+ +-.+|+-..+-|++.|.. .+|++=.+.++++
T Consensus 8 ~e~yL~~i~~l~~~~~~------------~~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~~ 75 (226)
T 2qq9_A 8 TEMYLRTIYELEEEGVT------------PLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAV 75 (226)
T ss_dssp HHHHHHHHHHHHHHTCC------------CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCC------------ccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCCeEECHHHHHHHHHH
Confidence 34567777777653111 2 4455554 556777777889998754 4788877788887
Q ss_pred HHHHHHhhHHHhhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHh
Q psy11482 109 KAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRHLTSKNLTNLDNLYYC 167 (172)
Q Consensus 109 r~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~lL~~lv~~HLT~KS~~Ri~~vF~~ 167 (172)
.++.+.+.--+... ..|+-+. ...+...+++++++....|++...++
T Consensus 76 ~~~~~~~e~~l~~~--lgl~~ee----------~~~~a~~leh~~s~~~~~~l~~~l~~ 122 (226)
T 2qq9_A 76 MRKHRLAERLLTDI--IGLDINK----------VHDEADRWEHVMSDEVERRLVKVLKD 122 (226)
T ss_dssp HHHHHHHHHHHHHT--TCCCHHH----------HHHHHHHHTTTCCHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHH--cCCCHHH----------HHHHHHHHHhhCCHHHHHHHHHHhCC
Confidence 77643222222221 1333332 12345567788899999998887665
No 17
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=20.15 E-value=3.6e+02 Score=28.46 Aligned_cols=113 Identities=16% Similarity=0.204 Sum_probs=62.6
Q ss_pred HHHhhhccccchhhhhcc----cchHHhHHHHHHHHHHHhccccCCCCCCCCCChHHHHHHHHHHHH----HHHHHHhhh
Q psy11482 21 KKLASKMSNKSMVKMYID----DRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIK----IIIKTTLLV 92 (172)
Q Consensus 21 KKllskmask~~~k~fID----Dtss~lLD~LYrl~K~yt~~~~~~~~~~~~~nkkeAeKviK~lIK----i~vKigvL~ 92 (172)
||.+|.- ..+++..... +.++++||.+-+|.-.|...+--|-.-.|..-.+++.+-++.+|+ -+-++---+
T Consensus 619 Kk~lg~~-~~~li~~i~~~~G~~~a~~~ld~l~~l~~~~l~~~GfSigi~D~~~~~~~~~~i~~~i~~a~~~v~~~~~~~ 697 (1733)
T 1twf_A 619 KKTVGSS-NGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEA 697 (1733)
T ss_dssp HHHHSSC-TTSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCBCCCGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccC-hhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcceEEehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666642 3455554443 578899999999998888755455455666666666444444443 222222223
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhHHHhhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy11482 93 KNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRHLTS 155 (172)
Q Consensus 93 rn~qf~~eEl~~~~~fr~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~lL~~lv~~HLT~ 155 (172)
+++.+.. ..-...+=+|.. -+.+.|+++++.+...+..+|.+
T Consensus 698 ~~g~l~~--------------------~pg~~~~e~~e~-~v~~il~~~~d~~~~~~~~~l~~ 739 (1733)
T 1twf_A 698 QANLLTA--------------------KHGMTLRESFED-NVVRFLNEARDKAGRLAEVNLKD 739 (1733)
T ss_dssp HHTCCCC--------------------CTTCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HhCCCcc--------------------CCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHhccc
Confidence 3333321 000001112221 25677888888888888888764
Done!