RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11482
(172 letters)
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2;
TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A
{Homo sapiens}
Length = 161
Score = 125 bits (315), Expect = 2e-37
Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 30 KSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTT 89
+S+ ++ID+ S +LD LYRV K Y T+++ Q++++IK LIK+ IK
Sbjct: 1 RSVAHLFIDETSSEVLDELYRVSKEY------------THSRPQAQRVIKDLIKVAIKVA 48
Query: 90 LLVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLL 149
+L +N F +EL + K M+ +SF EVDF+++AA L LT R L L+
Sbjct: 49 VLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLELV 108
Query: 150 QRHLTSKNLTNLDNLY 165
+ HLT K+ + +++
Sbjct: 109 EHHLTPKSHGRIRHVF 124
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.029
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 12/36 (33%)
Query: 21 KKLASKMSNKSMVKMYIDDRSGRLLDNLYRVIKTYV 56
KKL + + K+Y DD + L IK +
Sbjct: 23 KKLQASL------KLYADDSAPAL------AIKATM 46
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.32
Identities = 33/221 (14%), Positives = 65/221 (29%), Gaps = 93/221 (42%)
Query: 1 MSSSPDTDRFKTN-DLAM--------RVQK-----KLASKMSNKS----------M---- 32
++ + + F + A+ R + L + S M
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 33 ------VKMYIDDRSGRL---------LDN-------------LYRVIKTYVSFRHQS-G 63
V+ Y++ + L L N LY + ++ R
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN---LTLRKAKAP 399
Query: 64 NGKDTNNKKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHTLLM----SL 119
+G D + SE+ K+ ++F L + FH+ L+ L
Sbjct: 400 SGLDQSRIPFSER------KLKFS-------NRF----LPV----ASPFHSHLLVPASDL 438
Query: 120 IS--FYEVDFSYDAAYL-IRQLTT-----LRSQLAGLLQRH 152
I+ + + S++A + I T LR + +R
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.98
Identities = 34/213 (15%), Positives = 57/213 (26%), Gaps = 83/213 (38%)
Query: 3 SSPDTDRFKTNDLAMRVQKKLASKMSNKSMVKMYIDDRSGRL---------------LDN 47
+SP+T L ++ S+ + S +K+ I L L N
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 48 LY--RVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLI----KIII------KTTLLVKNH 95
+ + +F K L+ K + TT + +H
Sbjct: 253 VQNAKAWN---AFNLSC----------------KILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 96 QFSSTELTTCETLK--AKF---------------HTLLMSLISFYEVDFSYDAAYLIRQL 138
S LT E K+ + +S+I A IR
Sbjct: 294 H--SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-----------AESIRDG 340
Query: 139 TTLRSQLAGLLQRHLTSKNLTNLDNLYYCLKVL 171
+H+ LT + + L VL
Sbjct: 341 LATWDNW-----KHVNCDKLTTI--IESSLNVL 366
Score = 26.0 bits (56), Expect = 7.9
Identities = 29/206 (14%), Positives = 63/206 (30%), Gaps = 73/206 (35%)
Query: 13 NDLAMRVQKKLASKMSNKSMVK-------MYIDDRSGRL---LDNLY----RVIKTYVSF 58
D+ + +K+ S+V+ + I L L+N Y ++ Y
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 59 RHQSGNGKDTN---------------NKKQSEKI------------IKTLIKIIIKTTLL 91
+ + N + E++ ++ KI +T
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ--KIRHDSTAW 514
Query: 92 VKNHQFSSTELTTCETLK----------AKFHTLLMSLISFYEVDFSYDAAYLIRQLTTL 141
S + L T + LK K+ L+ +++ F L + L
Sbjct: 515 ----NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF-----------LPKIEENL 559
Query: 142 -RSQLAGLLQRHLTSKNLTNLDNLYY 166
S+ LL+ L +++ + ++
Sbjct: 560 ICSKYTDLLRIALMAED----EAIFE 581
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase,
structural genomics, PSI, protein initiative; HET: NAG
BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1
Length = 478
Score = 26.4 bits (58), Expect = 5.3
Identities = 11/87 (12%), Positives = 31/87 (35%), Gaps = 16/87 (18%)
Query: 14 DLAMRVQKKLASKMSNKSMVKMYIDDRSGRLLDNLYRV-----------IKTYVSFRHQS 62
+ M+++ L + + Y++ SG+ + V +K ++
Sbjct: 196 EKVMKIRTVLNKLDKPEGLYPNYLNPSSGQWGQHHVSVGGLGDSFYEYLLKAWLMS---- 251
Query: 63 GNGKDTNNKKQSEKIIKTLIKIIIKTT 89
+ D KK ++ + +I+ +
Sbjct: 252 -DKTDLEAKKMYFDAVQAIETHLIRKS 277
>1qbe_A Bacteriophage Q beta capsid; coat protein, RNA binding, icosahedral
virus; 3.50A {Enterobacteria phage qbeta} SCOP: d.85.1.1
Length = 132
Score = 25.6 bits (55), Expect = 6.3
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 121 SFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRHLTSKNLTNLDNLY 165
++ +V FS+ + +R++LA LL L + L+ Y
Sbjct: 88 AYADVTFSFTQYSTDEERAFVRTELAALLASPLLIDAIDQLNPAY 132
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.132 0.361
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,318,342
Number of extensions: 121636
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 10
Length of query: 172
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 85
Effective length of database: 4,272,666
Effective search space: 363176610
Effective search space used: 363176610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)