RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11482
         (172 letters)



>d2o97b1 a.55.1.1 (B:1-90) HU protein {Escherichia coli,
           beta-isoform [TaxId: 562]}
          Length = 90

 Score = 25.2 bits (55), Expect = 2.2
 Identities = 5/45 (11%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 70  NKKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHT 114
           +K  + + +  +I  + ++  L +    +     T    +    T
Sbjct: 17  SKAAAGRALDAIIASVTES--LKEGDDVALVGFGTFAVKERAART 59


>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 467

 Score = 25.7 bits (56), Expect = 3.0
 Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 6/89 (6%)

Query: 7   TDRFKTNDLAMRVQKKLASKMSNKSMVKMYIDDRSGRLLDNLYRV------IKTYVSFRH 60
           +      +  M+++  L      + +   Y++  SG+   +   V         Y+    
Sbjct: 189 SGDPVFAEKVMKIRTVLNKLDKPEGLYPNYLNPSSGQWGQHHVSVGGLGDSFYEYLLKAW 248

Query: 61  QSGNGKDTNNKKQSEKIIKTLIKIIIKTT 89
              +  D   KK     ++ +   +I+ +
Sbjct: 249 LMSDKTDLEAKKMYFDAVQAIETHLIRKS 277


>d1x87a_ e.51.1.1 (A:) Urocanate hydratase HutU {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 545

 Score = 25.1 bits (55), Expect = 4.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 63 GNGKDTNNKKQSEKIIKTLIKIIIKTTLLV 92
          G GK   N +  E I+ TL+++    TLL+
Sbjct: 43 GIGKAARNWECYEAIVDTLLRLENDETLLI 72


>d1huua_ a.55.1.1 (A:) HU protein {Bacillus stearothermophilus
           [TaxId: 1422]}
          Length = 90

 Score = 23.6 bits (51), Expect = 6.9
 Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 2/42 (4%)

Query: 70  NKKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAK 111
           +KK + K +  +   I +   L K  +         E  +  
Sbjct: 17  SKKDATKAVDAVFDSITEA--LRKGDKVQLIGFGNFEVRERA 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.132    0.361 

Gapped
Lambda     K      H
   0.267   0.0428    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 558,804
Number of extensions: 22700
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 12
Length of query: 172
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,322,926
Effective search space: 123032118
Effective search space used: 123032118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.8 bits)