BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11489
(433 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JJP9|UBQL1_RAT Ubiquilin-1 OS=Rattus norvegicus GN=Ubqln1 PE=1 SV=1
Length = 582
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 165/437 (37%), Positives = 240/437 (54%), Gaps = 47/437 (10%)
Query: 8 SEKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENL 67
+E K++ + VKTPKEK+ + E++SV FKE ++K+F + +QL LIFAGKI+KD + L
Sbjct: 23 AEPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHIDQLVLIFAGKILKDQDTL 82
Query: 68 SNHNMKDGLTSLKQLPLTKEIMHPKEEPTLMSEQLHLVLVRWEVSGICHHENLSNHNMKD 127
S H + DGLT ++ + P S Q S N ++ +
Sbjct: 83 SQHGIHDGLT-------VHLVIKTQNRPQDNSAQQTNTTGNSVTSSPAPDSNPTSGPAAN 135
Query: 128 GLTSLKQLPLTKEITHPKEEPILMSEQLHLVLVRWEAQMQQML---PQFLQQ-MQNPEIQ 183
L L ++ SE ++QMQ+ L P+ + Q M+NP +Q
Sbjct: 136 SSFGLGGLGGLAGLSSLGLNTTNFSE--------LQSQMQRQLLSNPEMMVQIMENPFVQ 187
Query: 184 GMMANPEALSAIQQIQAGIEQLRTAAPGMEWNF-RNPEINHMLNNPELLRQTMEMARNPS 242
M++NP+ + QL A P M+ RNPEI+HMLNNP ++RQT+E+ARNP+
Sbjct: 188 SMLSNPDLM----------RQLIMANPQMQQLIQRNPEISHMLNNPNIMRQTLELARNPA 237
Query: 243 MLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLNAATQQFSRNPYE------SNS 296
M+QE+MR Q+R LSNLESIPGGY+AL+RMY DIQEPMLNAA +QF NP+ S++
Sbjct: 238 MMQEMMRNQERDLSNLESIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPFASLVSSPSSA 297
Query: 297 SGGNPGRV--KAPFRRSKRYLGPRQCARPSSSLSTPGLANNQGGNAQAPPEVRYRSQLDQ 354
G P R + P P+ S+ ST + GNA + P + S +
Sbjct: 298 EGTQPSRTENRDPLPNPWAPQTPQSSPASGSTGSTTNTVSTSAGNATSTPAGQGTSGPNL 357
Query: 355 LTAMGFVNREANLQGSLFGNAGMQSMMQQMMANPQLMQNMMQAPYMQSMLQAMSADPSIA 414
+ G S+F GMQS++QQ+ NPQLMQNM+ APYM+SM+Q++S +P +A
Sbjct: 358 VPGAG---------ASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLA 408
Query: 415 QRVIGTNPLLQNSPELQ 431
+++ NPL +P+LQ
Sbjct: 409 AQMMLNNPLFAGNPQLQ 425
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 161 RWEAQMQQMLPQFLQQMQNPEIQGMMANPEALSAIQQIQAGIEQLRTAAPGMEWNF 216
+ + QM+Q LP FLQQMQNP+ M+NP A+ A+ QIQ G++ L T APG+ F
Sbjct: 423 QLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGLIPGF 478
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 33/44 (75%)
Query: 344 PEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMAN 387
PEVR++ QL+QL+AMGF+NREANLQ + + + +++++ +
Sbjct: 536 PEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGS 579
>sp|Q8R317|UBQL1_MOUSE Ubiquilin-1 OS=Mus musculus GN=Ubqln1 PE=1 SV=1
Length = 582
Score = 249 bits (636), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 169/438 (38%), Positives = 242/438 (55%), Gaps = 49/438 (11%)
Query: 8 SEKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENL 67
+E K++ + VKTPKEK+ + E++SV FKE ++K+F + +QL LIFAGKI+KD + L
Sbjct: 23 AEPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHIDQLVLIFAGKILKDQDTL 82
Query: 68 SNHNMKDGLTSLKQLPLTKEIMHPKEEPTLMSEQLHLVLVRWEVSGICHHENLSNHNMKD 127
S H + DGLT ++ + P S Q S N ++ + +
Sbjct: 83 SQHGIHDGLT-------VHLVIKTQNRPQDNSAQQTNAPGSTVTSSPAPDSNPTSGSAAN 135
Query: 128 GLTSLKQLPLTKEITHPKEEPILMSEQLHLVLVRWEAQMQQML---PQFLQQ-MQNPEIQ 183
+ L ++ SE ++QMQ+ L P+ + Q M+NP +Q
Sbjct: 136 SSFGVGGLGGLAGLSSLGLNTTNFSE--------LQSQMQRQLLSNPEMMVQIMENPFVQ 187
Query: 184 GMMANPEALSAIQQIQAGIEQLRTAAPGMEWNF-RNPEINHMLNNPELLRQTMEMARNPS 242
M++NP+ + QL A P M+ RNPEI+HMLNNP+++RQT+E+ARNP+
Sbjct: 188 SMLSNPDLM----------RQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPA 237
Query: 243 MLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLNAATQQFSRNPYESNSSGGNPG 302
M+QE+MR QDRALSNLESIPGGY+AL+RMY DIQEPMLNAA +QF NP+ S S +
Sbjct: 238 MMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPFASLVSSSSSA 297
Query: 303 RVKAPFRRSKRYLGPRQCARPSSSLSTPG---------LANNQGGNAQAPPEVRYRSQLD 353
P R R P A P +S S+P + GG A + P + S
Sbjct: 298 EGTQPSRTENRDPLPNPWA-PQTSQSSPASGTTGSTTNTMSTSGGTATSTPAGQSTSGPS 356
Query: 354 QLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANPQLMQNMMQAPYMQSMLQAMSADPSI 413
+ G S+F GMQS++QQ+ NPQLMQNM+ APYM+SMLQ++S +P +
Sbjct: 357 LVPGAG---------ASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMLQSLSQNPDL 407
Query: 414 AQRVIGTNPLLQNSPELQ 431
A +++ NPL +P+LQ
Sbjct: 408 AAQMMLNNPLFAGNPQLQ 425
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 161 RWEAQMQQMLPQFLQQMQNPEIQGMMANPEALSAIQQIQAGIEQLRTAAPGMEWNF 216
+ + QM+Q LP FLQQMQNP+ M+NP A+ A+ QIQ G++ L T APG+ F
Sbjct: 423 QLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGLIPGF 478
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 33/44 (75%)
Query: 344 PEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMAN 387
PEVR++ QL+QL+AMGF+NREANLQ + + + +++++ +
Sbjct: 536 PEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGS 579
>sp|Q5R684|UBQL1_PONAB Ubiquilin-1 OS=Pongo abelii GN=UBQLN1 PE=2 SV=1
Length = 589
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 121/274 (44%), Positives = 169/274 (61%), Gaps = 19/274 (6%)
Query: 163 EAQMQQML---PQFLQQ-MQNPEIQGMMANPEALSAIQQIQAGIEQLRTAAPGMEWNF-R 217
++QMQ+ L P+ + Q M+NP +Q M++NP+ + QL A P M+ R
Sbjct: 172 QSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLM----------RQLIMANPQMQQLIQR 221
Query: 218 NPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQE 277
NPEI+HMLNNP+++RQT+E+ARNP+M+QE+MR QDRALSNLESIPGGY+AL+RMY DIQE
Sbjct: 222 NPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQE 281
Query: 278 PMLNAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPGLANNQG 337
PML+AA +QF NP+ S S + G P R R P A P +S S+ +
Sbjct: 282 PMLSAAQEQFGGNPFASLVSNTSSGEGSQPSRTENRDPLPNPWA-PQTSQSSSASSGTAS 340
Query: 338 GNAQAPPEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANPQLMQNMMQA 397
+ TA V + S+F GMQS++QQ+ NPQLMQNM+ A
Sbjct: 341 TVGGTTGSTASGTSGQSTTAPNLV---PGVGASMFNTPGMQSLLQQITENPQLMQNMLSA 397
Query: 398 PYMQSMLQAMSADPSIAQRVIGTNPLLQNSPELQ 431
PYM+SM+Q++S +P +A +++ NPL +P+LQ
Sbjct: 398 PYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQLQ 431
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 49/67 (73%)
Query: 11 KLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNH 70
K++ + VKTPKEK+ + E++SV FKE ++K+F + +QL LIFAGKI+KD + LS H
Sbjct: 35 KIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQH 94
Query: 71 NMKDGLT 77
+ DGLT
Sbjct: 95 GIHDGLT 101
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 161 RWEAQMQQMLPQFLQQMQNPEIQGMMANPEALSAIQQIQAGIEQLRTAAPGMEWNF 216
+ + QM+Q LP FLQQMQNP+ M+NP A+ A+ QIQ G++ L T APG+ F
Sbjct: 429 QLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGLIPGF 484
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
Query: 344 PEVRYRSQLDQLTAMGFVNREANLQGSLFGNAG 376
PEVR++ QL+Q +AMGF+NREANLQ +L G
Sbjct: 543 PEVRFQQQLEQPSAMGFLNREANLQ-ALIATGG 574
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 377 MQSMMQ-QMMANPQLMQNMMQAPYMQSMLQAMSADPSIAQRVIGTNP----LLQNSPEL 430
+QS MQ Q+++NP++M +M+ P++QSML ++P + +++I NP L+Q +PE+
Sbjct: 171 LQSQMQRQLLSNPEMMVQIMENPFVQSML----SNPDLMRQLIMANPQMQQLIQRNPEI 225
>sp|Q9UMX0|UBQL1_HUMAN Ubiquilin-1 OS=Homo sapiens GN=UBQLN1 PE=1 SV=2
Length = 589
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 121/274 (44%), Positives = 169/274 (61%), Gaps = 19/274 (6%)
Query: 163 EAQMQQML---PQFLQQ-MQNPEIQGMMANPEALSAIQQIQAGIEQLRTAAPGMEWNF-R 217
++QMQ+ L P+ + Q M+NP +Q M++NP+ + QL A P M+ R
Sbjct: 172 QSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLM----------RQLIMANPQMQQLIQR 221
Query: 218 NPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQE 277
NPEI+HMLNNP+++RQT+E+ARNP+M+QE+MR QDRALSNLESIPGGY+AL+RMY DIQE
Sbjct: 222 NPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQE 281
Query: 278 PMLNAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPGLANNQG 337
PML+AA +QF NP+ S S + G P R R P A P +S S+ +
Sbjct: 282 PMLSAAQEQFGGNPFASLVSNTSSGEGSQPSRTENRDPLPNPWA-PQTSQSSSASSGTAS 340
Query: 338 GNAQAPPEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANPQLMQNMMQA 397
+ TA V + S+F GMQS++QQ+ NPQLMQNM+ A
Sbjct: 341 TVGGTTGSTASGTSGQSTTAPNLV---PGVGASMFNTPGMQSLLQQITENPQLMQNMLSA 397
Query: 398 PYMQSMLQAMSADPSIAQRVIGTNPLLQNSPELQ 431
PYM+SM+Q++S +P +A +++ NPL +P+LQ
Sbjct: 398 PYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQLQ 431
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 49/67 (73%)
Query: 11 KLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNH 70
K++ + VKTPKEK+ + E++SV FKE ++K+F + +QL LIFAGKI+KD + LS H
Sbjct: 35 KIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQH 94
Query: 71 NMKDGLT 77
+ DGLT
Sbjct: 95 GIHDGLT 101
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 161 RWEAQMQQMLPQFLQQMQNPEIQGMMANPEALSAIQQIQAGIEQLRTAAPGMEWNF 216
+ + QM+Q LP FLQQMQNP+ M+NP A+ A+ QIQ G++ L T APG+ F
Sbjct: 429 QLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGLIPGF 484
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 27/33 (81%), Gaps = 1/33 (3%)
Query: 344 PEVRYRSQLDQLTAMGFVNREANLQGSLFGNAG 376
PEVR++ QL+QL+AMGF+NREANLQ +L G
Sbjct: 543 PEVRFQQQLEQLSAMGFLNREANLQ-ALIATGG 574
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 377 MQSMMQ-QMMANPQLMQNMMQAPYMQSMLQAMSADPSIAQRVIGTNP----LLQNSPEL 430
+QS MQ Q+++NP++M +M+ P++QSML ++P + +++I NP L+Q +PE+
Sbjct: 171 LQSQMQRQLLSNPEMMVQIMENPFVQSML----SNPDLMRQLIMANPQMQQLIQRNPEI 225
>sp|Q9NRR5|UBQL4_HUMAN Ubiquilin-4 OS=Homo sapiens GN=UBQLN4 PE=1 SV=2
Length = 601
Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/265 (43%), Positives = 159/265 (60%), Gaps = 30/265 (11%)
Query: 171 PQFLQQ-MQNPEIQGMMANPEALSAIQQIQAGIEQLRTAAPGMEWNFRNPEINHMLNNPE 229
P+ L Q M+NP +Q MM+NP+ + + ++QL ME RNPEI+HMLNNPE
Sbjct: 193 PEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQL------ME---RNPEISHMLNNPE 243
Query: 230 LLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLNAATQQFSR 289
L+RQTME+ARNP+M+QE+MR QDRALSNLESIPGGY+AL+RMY DIQEPM +AA +QF
Sbjct: 244 LMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAAREQFGN 303
Query: 290 NPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPGLANNQGGNAQAP------ 343
NP+ S+ +G + P R R P + PS S QAP
Sbjct: 304 NPF-SSLAGNSDSSSSQPLRTENREPLPNPWS-PSPPTS------------QAPGSGGEG 349
Query: 344 PEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANPQLMQNMMQAPYMQSM 403
SQ+ + F A+L +F + MQ+++QQ+ NPQLMQN++ APYM+SM
Sbjct: 350 TGGSGTSQVHPTVSNPFGINAASLGSGMFNSPEMQALLQQISENPQLMQNVISAPYMRSM 409
Query: 404 LQAMSADPSIAQRVIGTNPLLQNSP 428
+Q ++ +P A +++ PL +P
Sbjct: 410 MQTLAQNPDFAAQMMVNVPLFAGNP 434
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 1 MAEAQQESEKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKI 60
MAE + I + VKTPK+K+ I I + ASV +FKE ++++F A +QL LIFAGKI
Sbjct: 1 MAEPSGAETRPPIRVTVKTPKDKEEIVICDRASVKEFKEEISRRFKAQQDQLVLIFAGKI 60
Query: 61 MKDHENLSNHNMKDGLT 77
+KD + L+ H +KDGLT
Sbjct: 61 LKDGDTLNQHGIKDGLT 77
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 171 PQFLQQMQNPEIQGMMANPEALSAIQQIQAGIEQLRTAAPGM 212
P FLQQMQNPE ++ NP A+ A+ QIQ G++ L+T APG+
Sbjct: 445 PVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQTEAPGL 486
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 338 GNAQA-PPEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMAN 387
GN+Q PEVR++ QL+QL +MGF+NREANLQ + + + +++++ +
Sbjct: 548 GNSQVQTPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGS 598
>sp|Q9QZM0|UBQL2_MOUSE Ubiquilin-2 OS=Mus musculus GN=Ubqln2 PE=1 SV=2
Length = 638
Score = 179 bits (453), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 161/259 (62%), Gaps = 16/259 (6%)
Query: 174 LQQMQNPEIQGMMANPEALSAIQQIQAGIEQLRTAAPGMEWNF-RNPEINHMLNNPELLR 232
+Q M+NP +Q M++NP+ + QL A P M+ RNPEI+H+LNNP+++R
Sbjct: 194 IQIMENPFVQSMLSNPDLM----------RQLIMANPQMQQLIQRNPEISHLLNNPDIMR 243
Query: 233 QTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLNAATQQFSRNPY 292
QT+E+ARNP+M+QE+MR QD ALSNLESIPGGY+AL+RMY DIQEPMLNAA +QF NP+
Sbjct: 244 QTLEIARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPF 303
Query: 293 ESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPGLANNQGGNAQAPPEVRYRSQL 352
+ S G P R R P A P ++ + ++ + S
Sbjct: 304 ATVGSSSTSGEGTQPSRTENRDPLPNPWAPPPTTQTAATTTTTTTTSSGSGSGSSSSSTT 363
Query: 353 DQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANPQLMQNMMQAPYMQSMLQAMSADPS 412
T M N A++ F GMQS++QQ+ NPQL+QNM+ APYM+SM+Q++S +P
Sbjct: 364 AGNT-MAAANYVASI----FSTPGMQSLLQQITENPQLIQNMLSAPYMRSMMQSLSQNPD 418
Query: 413 IAQRVIGTNPLLQNSPELQ 431
+A +++ ++PL ++P+LQ
Sbjct: 419 MAAQMMLSSPLFTSNPQLQ 437
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 49/67 (73%)
Query: 11 KLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNH 70
K+I + VKTPKEK+ + E+++V FKEA++K+F + +QL LIFAGKI+KD + L H
Sbjct: 31 KIIKVTVKTPKEKEEFAVPENSTVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLMQH 90
Query: 71 NMKDGLT 77
+ DGLT
Sbjct: 91 GIHDGLT 97
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%)
Query: 149 ILMSEQLHLVLVRWEAQMQQMLPQFLQQMQNPEIQGMMANPEALSAIQQIQAGIEQLRTA 208
+++S L + + QM+ LP FLQQMQNPE M+NP A+ A+ QIQ G++ L T
Sbjct: 423 MMLSSPLFTSNPQLQEQMRPQLPNFLQQMQNPETIAAMSNPRAMQALMQIQQGLQTLATE 482
Query: 209 APGMEWNF 216
APG+ +F
Sbjct: 483 APGLIPSF 490
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 337 GGNAQAPP--EVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMAN 387
GG+ PP EVR++ QL+QL AMGF+NREANLQ + + + +++++ +
Sbjct: 583 GGSPPQPPNPEVRFQQQLEQLNAMGFLNREANLQALIATGGDINAAIERLLGS 635
>sp|Q99NB8|UBQL4_MOUSE Ubiquilin-4 OS=Mus musculus GN=Ubqln4 PE=1 SV=1
Length = 596
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 113/265 (42%), Positives = 158/265 (59%), Gaps = 30/265 (11%)
Query: 171 PQFLQQ-MQNPEIQGMMANPEALSAIQQIQAGIEQLRTAAPGMEWNFRNPEINHMLNNPE 229
P+ L Q M+NP +Q MM+NP+ + + ++QL ME RNPEI+HMLNNPE
Sbjct: 188 PEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQL------ME---RNPEISHMLNNPE 238
Query: 230 LLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLNAATQQFSR 289
L+RQTME+ARNP+M+QE+MR QDRALSNLES+PGGY+AL+RMY DIQEPM AA +QF
Sbjct: 239 LMRQTMELARNPAMMQEMMRNQDRALSNLESVPGGYNALRRMYTDIQEPMFTAAREQFGN 298
Query: 290 NPYESNSSGGNPGRVKAPFRRSKRYLGPRQCARPSSSLSTPGLANNQGGNAQAP------ 343
NP+ S+ +G + P R R P + PS S QAP
Sbjct: 299 NPF-SSLAGNSDNSSSQPLRTENREPLPNPWS-PSPPTS------------QAPGSGGEG 344
Query: 344 PEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANPQLMQNMMQAPYMQSM 403
SQ+ + F A+L +F + MQ+++QQ+ NPQLMQN++ APYM++M
Sbjct: 345 TGGSGTSQVHPTVSNPFGINAASLGSGMFNSPEMQALLQQISENPQLMQNVISAPYMRTM 404
Query: 404 LQAMSADPSIAQRVIGTNPLLQNSP 428
+Q ++ +P A +++ PL +P
Sbjct: 405 MQTLAQNPDFAAQMMVNVPLFAGNP 429
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 1 MAEAQQESEKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKI 60
MAE + I + VKTPK+K+ I I + ASV +FKE ++++F A +QL LIFAGKI
Sbjct: 1 MAEPSGAETRPQIRVTVKTPKDKEEIVICDQASVKEFKEEISRRFKAQQDQLVLIFAGKI 60
Query: 61 MKDHENLSNHNMKDGLT 77
+KD + LS H +KDGLT
Sbjct: 61 LKDGDTLSQHGIKDGLT 77
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 338 GNAQAP-PEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMAN 387
GN+Q P PEVR++ QL+QL +MGF+NREANLQ + + + +++++ +
Sbjct: 543 GNSQVPMPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGS 593
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 171 PQFLQQMQNPEIQGMMANPEALSAIQQIQAGIEQLRTAAPGM 212
P FLQQMQNPE ++ NP A+ A+ QIQ G++ L+T APG+
Sbjct: 440 PVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQTEAPGL 481
>sp|Q8C5U9|UBQL3_MOUSE Ubiquilin-3 OS=Mus musculus GN=Ubqln3 PE=2 SV=1
Length = 658
Score = 168 bits (425), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 162/308 (52%), Gaps = 58/308 (18%)
Query: 1 MAEAQQESEKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKI 60
+A AQ + +LI + VKTPK+K++ + + ++ KE ++ +F A P QL LIFAGKI
Sbjct: 13 LAPAQ---DSQLIRVTVKTPKDKEDFSVVDTCTIRQLKEKISHRFKAHPNQLVLIFAGKI 69
Query: 61 MKDHENLSNHNMKDGLTSLKQLPLTKEIMHPKEEPTLMSEQLHLVLV--RWEVSGICHHE 118
+KD ++L+ ++DGLT +HLV+ R + C
Sbjct: 70 LKDPDSLAQCGVRDGLT------------------------VHLVIKMQRRTIGTECPSP 105
Query: 119 NLSNHNMKDGLTSLKQLPLTKEITHPKEEP-----ILMS-EQLHLVLVRWEAQMQQML-- 170
+S G ++P + + P +L L L + Q ++
Sbjct: 106 PVSIPGPNPG-----EIPQSSSVYSVDGSPSFSLGVLTGLSGLGLTSGSFSDQPGSLMWQ 160
Query: 171 ----PQFLQQM-QNPEIQGMMANPEALSAIQQIQAGIEQLRTAAPGMEWNFR-NPEINHM 224
P+ + Q+ +P IQG+++N + QL P M+ + NPEI H+
Sbjct: 161 HISVPELVAQLVDDPFIQGLLSN----------TGLVRQLVLDNPHMQHLIQQNPEIGHI 210
Query: 225 LNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLNAAT 284
LNNPE++RQTME RNPSM+QE+MR+QDRALSNLESIPGGY+ L+ MY DI +PMLNA
Sbjct: 211 LNNPEIMRQTMEFLRNPSMMQEMMRSQDRALSNLESIPGGYNVLRTMYTDIMDPMLNAVQ 270
Query: 285 QQFSRNPY 292
+QF NP+
Sbjct: 271 EQFGGNPF 278
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 345 EVRYRSQLDQLTAMGFVNREANLQ 368
E +R QL+QL AMGF+N EANLQ
Sbjct: 616 EAHFRVQLEQLRAMGFLNLEANLQ 639
>sp|Q9H347|UBQL3_HUMAN Ubiquilin-3 OS=Homo sapiens GN=UBQLN3 PE=1 SV=2
Length = 655
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 159/301 (52%), Gaps = 57/301 (18%)
Query: 9 EKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLS 68
+ LI + VKTPK+K++ + + ++ KE ++++F A P+QL LIFAGKI+KD ++L+
Sbjct: 18 DPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLA 77
Query: 69 NHNMKDGLTSLKQLPLTKEIMHPKEEPTLMSEQLHLVLVRWE--VSGICHHENLSNHNMK 126
++DGLT +HLV+ R + C ++
Sbjct: 78 QCGVRDGLT------------------------VHLVIKRQHRAMGNECPAASVPTQGPS 113
Query: 127 DGLTSLKQLPLTKEITHPKEEPILMSEQLHLVLVRW-----------EAQMQQ--MLPQF 173
G LP I +P + P S L L R + M+Q +P+F
Sbjct: 114 PG-----SLPQPSSI-YPADGPPAFSLGLLTGLSRLGLAYRGFPDQPSSLMRQHVSVPEF 167
Query: 174 LQQM-QNPEIQGMMANPEALSAIQQIQAGIEQLRTAAPGMEWNFR-NPEINHMLNNPELL 231
+ Q+ +P I G+++N + QL P M+ + NPEI H+LNNPE++
Sbjct: 168 VTQLIDDPFIPGLLSN----------TGLVRQLVLDNPHMQQLIQHNPEIGHILNNPEIM 217
Query: 232 RQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLNAATQQFSRNP 291
RQT+E RNP+M+QE++R+QDR LSNLESIPGGY+ L MY DI +PMLNA +QF NP
Sbjct: 218 RQTLEFLRNPAMMQEMIRSQDRVLSNLESIPGGYNVLCTMYTDIMDPMLNAVQEQFGGNP 277
Query: 292 Y 292
+
Sbjct: 278 F 278
Score = 38.9 bits (89), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 344 PEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQM 384
PE ++ QL+QL +MGF+NREANLQ + + + ++++
Sbjct: 612 PEAHFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKL 652
Score = 32.7 bits (73), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 182 IQGMMANPEALSAIQQIQAGIEQLRTAAP 210
+Q MANP AL A++QI+ G++ L T AP
Sbjct: 511 LQAAMANPRALQALRQIEQGLQVLATEAP 539
>sp|Q8IYU4|UBQLN_HUMAN Ubiquilin-like protein OS=Homo sapiens GN=UBQLNL PE=2 SV=3
Length = 475
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 144/304 (47%), Gaps = 56/304 (18%)
Query: 15 IVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKD 74
++VKT +++ + +D SV FKE + F +QL L+F G ++KDH+ LS + D
Sbjct: 33 VIVKTAGNQKDFMVADDISVRQFKEMLLAHFQCQMDQLVLVFMGCLLKDHDTLSQRGIMD 92
Query: 75 GLT---SLKQLPLTKEIMHP-KEEPTLMSEQLHLVLVRWEVSGICHHE--NLSNHNMKDG 128
G T +K ++ + H ++ PT + CH + N +
Sbjct: 93 GHTIYLVIKSKQGSRSLAHSFRDLPT---------------NDPCHRDRNTKGNSSRVHQ 137
Query: 129 LTSLKQLPLTKEITH--PKEEPILMSEQLHLVLVRWEAQMQQMLPQFLQQMQNPEIQGMM 186
T + Q P+ E+ H + P + ++ L + +AQM ++NP IQ ++
Sbjct: 138 PTGMNQAPV--ELAHFVGSDAPKVHTQNLEVSHPECKAQM----------LENPSIQRLL 185
Query: 187 ANPEALSAIQQIQAGIEQLRTAAPGMEWNFRNPEINH-MLNNPELLRQTMEMARNPSMLQ 245
+N E + +QL +NPE++ +L+N E+L QT+E+ARN +M+Q
Sbjct: 186 SNMEFMWQFISEHLDTQQLMQ---------QNPEVSRLLLDNSEILLQTLELARNLAMIQ 236
Query: 246 ELMRTQD-----------RALSNLESIPGGYSALQRMYRDIQEPMLNAATQQFSRNPYES 294
E+M+ Q + LE++PGG +AL + Y DI + MLN+ F NP+ +
Sbjct: 237 EIMQIQQPSQNLEYPLNPQPYLGLETMPGGNNALGQNYADINDQMLNSMQDPFGGNPFTA 296
Query: 295 NSSG 298
+G
Sbjct: 297 LLAG 300
>sp|Q9NIF3|UBQL_DICDI Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1
Length = 523
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 62/88 (70%), Gaps = 6/88 (6%)
Query: 218 NPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQE 277
NPE+ ML++P LRQ++EM RNP +++E+MR DRA+ N+E+ P G++ L+RMY DIQE
Sbjct: 149 NPEMAQMLSDPRQLRQSLEMMRNPELMREMMRNADRAMINIENHPEGFNLLRRMYTDIQE 208
Query: 278 PMLNAATQQFS------RNPYESNSSGG 299
P++NAA QQ + NP ++N+
Sbjct: 209 PLMNAANQQAASQNQTNSNPIQTNTDAN 236
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 341 QAPPEVRYRSQLDQLTAMGFVNREANLQG--SLFGNAGM 377
Q PPE R+R QL+QL +GFV+R AN+ S GN +
Sbjct: 478 QEPPEQRFRLQLEQLEELGFVDRAANISALTSTNGNINL 516
Score = 35.8 bits (81), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 159 LVRWEAQMQQML---PQFLQQMQNPEIQGMMANPEALSAIQQIQAGIEQLR 206
++ Q++QM+ PQ + M NPE MM NPE ++A+ Q+Q + LR
Sbjct: 369 MITMNPQLRQMMDSNPQLREAMNNPEFLNMMTNPENMNAMMQLQQAMGTLR 419
>sp|Q9UHD9|UBQL2_HUMAN Ubiquilin-2 OS=Homo sapiens GN=UBQLN2 PE=1 SV=2
Length = 624
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 50/69 (72%)
Query: 9 EKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLS 68
E K+I + VKTPKEK+ + E++SV FKEA++K+F + +QL LIFAGKI+KD + L
Sbjct: 29 EPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLI 88
Query: 69 NHNMKDGLT 77
H + DGLT
Sbjct: 89 QHGIHDGLT 97
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%)
Query: 161 RWEAQMQQMLPQFLQQMQNPEIQGMMANPEALSAIQQIQAGIEQLRTAAPGMEWNF 216
+ + QM+ LP FLQQMQNP+ M+NP A+ A+ QIQ G++ L T APG+ +F
Sbjct: 421 QLQEQMRPQLPAFLQQMQNPDTLSAMSNPRAMQALMQIQQGLQTLATEAPGLIPSF 476
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 337 GGNA-QAP-PEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMAN 387
G NA Q P PEVR++ QL+QL AMGF+NREANLQ + + + +++++ +
Sbjct: 569 GANAPQLPNPEVRFQQQLEQLNAMGFLNREANLQALIATGGDINAAIERLLGS 621
>sp|Q14DL0|UBQLN_MOUSE Ubiquilin-like protein OS=Mus musculus GN=Ubqlnl PE=1 SV=2
Length = 610
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 134/296 (45%), Gaps = 43/296 (14%)
Query: 12 LITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
+I ++VKTP + + +D V FKE ++ F EQL L+F G+++KDH+ LS
Sbjct: 30 VIRVIVKTPGNQIIFTVADDTLVRQFKEILSAHFKCQMEQLVLVFMGRLLKDHDTLSQRG 89
Query: 72 MKDGLTSLKQLPLTKEIMHPKEEPTLMSEQLHLVLVRWEVSGICHHEN--LSNHNMKDGL 129
+ DG + ++ K P ++ ++ + CH + N +M
Sbjct: 90 ITDGH-------IIHVVIKSKHGPRSLAHSFRNLV----TNNPCHQDRNPKGNSSMVCQS 138
Query: 130 TSLKQLPLTKEITHPKEEPILMSEQLHLVLVRWEAQMQQMLPQFLQQMQNPEIQGMMANP 189
+ + + + E P + +E + + AQ+ ++N +Q +++N
Sbjct: 139 AGMNETKVESSLLMEPEAPKVGTESPEVGSLEHIAQV----------LENLCVQSLLSNM 188
Query: 190 EALSAIQQIQAGIEQLRTAAPGMEWNFRNPEINHMLNNPELLRQTMEMARNPSMLQELMR 249
+ + + Q +E+L +NPE++H+L+N E+L QT+E+ R+ +++QE+M+
Sbjct: 189 DFVHQMPPEQPYMEELIQ---------QNPEVSHLLDNSEILCQTLELVRHLAIIQEIMQ 239
Query: 250 TQDRA-----------LSNLESIPGGYSALQRMYRDIQEPMLNAATQQFSRNPYES 294
Q A LE++P G + L + Y + + MLN N + +
Sbjct: 240 IQQPAQNPEYPPNSQPFLGLETVPNGNNHLGQSYVNNNDHMLNGVPDLLEGNCFTA 295
Score = 36.2 bits (82), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 344 PEVRYRSQLDQLTAMGFVNREANLQG 369
PEVR+ +++ L AMGFVN ANLQ
Sbjct: 564 PEVRFSKEMECLQAMGFVNYNANLQA 589
>sp|Q5XIP4|UBQLN_RAT Ubiquilin-like protein OS=Rattus norvegicus GN=Ubqlnl PE=2 SV=1
Length = 612
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 12 LITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
+I ++VKTP + + ED SV FKE ++ F EQL L+ G+++KDH+ LS
Sbjct: 30 VIRVIVKTPGNQNVFTVAEDTSVRQFKEQLSSHFKCQMEQLVLVSMGRLLKDHDTLSQRG 89
Query: 72 MKDGLT 77
+ DG T
Sbjct: 90 ITDGHT 95
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 317 PRQCARPSSSLSTPGLANNQGGNAQAPPEVRYRSQLDQLTAMGFVNREANLQGSLFGNAG 376
P C + + L + ++ PEVR+ +++ L AMGFVN ANLQ + +
Sbjct: 539 PESCHKSGTVLQREQPLSGDSSHSLQAPEVRFSKEMECLQAMGFVNYNANLQALIATDGD 598
Query: 377 MQSMMQQMMAN 387
+ + ++ A+
Sbjct: 599 TNAAIHKLKAS 609
>sp|Q10169|DSK2_SCHPO Deubiquitination-protection protein dph1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dph1 PE=4 SV=1
Length = 354
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 13 ITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
I++ +K + K + ++ ++SV KEA+A + E+ LI+AG+++KD E+L +
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 72 MKDG 75
++DG
Sbjct: 64 IQDG 67
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 343 PPEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMAN 387
PPE RY QL QL MGFV+ E N+Q +Q ++ ++++
Sbjct: 309 PPEERYAEQLSQLNEMGFVDFERNVQALRRSGGNVQGAIESLLSD 353
>sp|P48510|DSK2_YEAST Ubiquitin domain-containing protein DSK2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DSK2 PE=1
SV=2
Length = 373
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALP-EQLCLIFAGKIMKDHENLSNHN 71
+ I +K+ ++K + + +++V FKEA+ K N +P LI++GKI+KD + + +++
Sbjct: 3 LNIHIKSGQDKWEVNVAPESTVLQFKEAI-NKANGIPVANQRLIYSGKILKDDQTVESYH 61
Query: 72 MKDG 75
++DG
Sbjct: 62 IQDG 65
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 172 QFLQQMQNPEIQG----MMANPEALSAIQQIQAGIEQLRTAAPGMEWNFRNPEINHMLNN 227
+ L+ M+NP Q M++NP+ L + Q QL+ P ++P ML N
Sbjct: 150 ELLRMMENPIFQSQMNEMLSNPQMLDFMIQSN---PQLQAMGPQARQMLQSPMFRQMLTN 206
Query: 228 PELLRQTMEMAR 239
P+++RQ+M+ AR
Sbjct: 207 PDMIRQSMQFAR 218
>sp|Q54LV1|RAD23_DICDI UV excision repair protein RAD23 homolog OS=Dictyostelium
discoideum GN=rcbA PE=1 SV=1
Length = 342
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 21 KEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDG 75
KE E+ D +V + K +++K N P LI++GKI++D L ++N+ D
Sbjct: 10 KEIYVFEVNGDLTVAELKNLISEKHNQTPSWQTLIYSGKILEDKRTLESYNITDS 64
>sp|C1BXU5|UBL4A_ESOLU Ubiquitin-like protein 4A OS=Esox lucius GN=ubl4a PE=2 SV=1
Length = 154
Score = 38.9 bits (89), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 25 NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
N+++ ED V+ KE V+++ N P Q L++ GK + D LS++++
Sbjct: 14 NVQVTEDEKVSTVKELVSERLNIPPNQQRLLYKGKALADEHRLSDYSI 61
>sp|Q9JK66|PRKN2_RAT E3 ubiquitin-protein ligase parkin OS=Rattus norvegicus GN=Park2
PE=1 SV=1
Length = 465
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 26 IEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMK 73
+E++ D S+ KE VAK+ +QL +IFAGK +++H + N +++
Sbjct: 15 VEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELQNHLTVQNCDLE 62
>sp|Q9WVS6|PRKN2_MOUSE E3 ubiquitin-protein ligase parkin OS=Mus musculus GN=Park2 PE=1
SV=1
Length = 464
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 26 IEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMK 73
+E++ D S+ KE VAK+ +QL +IFAGK + +H + N +++
Sbjct: 15 VEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLE 62
>sp|P0CG70|UBI4P_NEUCR Polyubiquitin OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ubi-4
PE=1 SV=1
Length = 305
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K+ + K P+Q LIFAGK ++D LS++N+
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K+ + K P+Q LIFAGK ++D LS++N+
Sbjct: 79 IFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K+ + K P+Q LIFAGK ++D LS++N+
Sbjct: 155 IFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K+ + K P+Q LIFAGK ++D LS++N+
Sbjct: 231 IFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289
>sp|P0C224|RL40_NEUCR Ubiquitin-60S ribosomal protein L40 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=ubi-1 PE=1 SV=2
Length = 128
Score = 37.0 bits (84), Expect = 0.32, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 13 ITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
+ I VKT K +E+E ++ + K+ + K P+Q LIFAGK ++D LS++N
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 72 MKDGLTSLKQLPLTKEIMHP 91
++ T L L I+ P
Sbjct: 61 IQKESTLHLVLRLRGGIIEP 80
>sp|P0CG63|UBI4P_YEAST Polyubiquitin OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=UBI4 PE=1 SV=1
Length = 381
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 79 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 155 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 231 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 307 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 365
>sp|P0CG72|UBI4P_SCHPO Polyubiquitin OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=ubi4 PE=1 SV=1
Length = 382
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 79 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 155 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 231 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 307 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 365
>sp|P0CG74|UBI4P_CANAX Polyubiquitin OS=Candida albicans GN=UBI4 PE=1 SV=1
Length = 305
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 79 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 155 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 231 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289
>sp|O60260|PRKN2_HUMAN E3 ubiquitin-protein ligase parkin OS=Homo sapiens GN=PARK2 PE=1
SV=2
Length = 465
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 26 IEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM-KDGLTSLKQLPL 84
+E++ D S+ KE VAK+ +QL +IFAGK +++ + N ++ + + + Q P
Sbjct: 15 VEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQRPW 74
Query: 85 TK 86
K
Sbjct: 75 RK 76
>sp|P0CG75|UBI4P_KLULA Polyubiquitin OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=ubi4 PE=1 SV=1
Length = 381
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 79 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 155 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 231 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 307 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 365
>sp|P0CG73|UBI1P_CANAX Polyubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1
Length = 229
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 79 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 155 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
>sp|P42740|UBIQP_AGLNE Polyubiquitin OS=Aglaothamnion neglectum PE=2 SV=2
Length = 457
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 155 IFVKTITGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 231 IFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNL 289
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 79 IFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 307 IFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 365
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 383 IFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 441
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N
Sbjct: 3 IFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
>sp|P32628|RAD23_YEAST UV excision repair protein RAD23 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RAD23 PE=1 SV=1
Length = 398
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 34/55 (61%)
Query: 21 KEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDG 75
KEK +++E ++ + K +A+ + Q+ LI++GK+++D + +S +KDG
Sbjct: 11 KEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDG 65
>sp|P22589|UBIQP_PHYIN Polyubiquitin OS=Phytophthora infestans PE=1 SV=2
Length = 229
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +++E S+ + K+ + K P+Q LIFAGK ++D LS++N+
Sbjct: 3 IFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +++E S+ + K+ + K P+Q LIFAGK ++D LS++N+
Sbjct: 79 IFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +++E S+ + K+ + K P+Q LIFAGK ++D LS++N+
Sbjct: 155 IFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
>sp|B7NZQ9|UBL4A_RABIT Ubiquitin-like protein 4A OS=Oryctolagus cuniculus GN=UBL4A PE=3
SV=1
Length = 157
Score = 36.6 bits (83), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 25 NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
N+++ ED V+ K+ V++K N Q L+F GK + D + LS++++
Sbjct: 14 NLQVPEDEQVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSI 61
>sp|P14795|RL40_TRYCR Ubiquitin-60S ribosomal protein L40 OS=Trypanosoma cruzi GN=FUS1
PE=2 SV=2
Length = 128
Score = 36.6 bits (83), Expect = 0.43, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 13 ITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
+ I VKT K +E+E ++ + K + K P+Q LIFAGK ++D L+++N
Sbjct: 1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 72 MKDGLTSLKQLPLTKEIMHPKEE 94
++ T L L +M P E
Sbjct: 61 IQKESTLHLVLRLRGGVMEPTLE 83
>sp|P0CH09|RL402_YEAST Ubiquitin-60S ribosomal protein L40 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPL40B PE=1 SV=1
Length = 128
Score = 36.6 bits (83), Expect = 0.44, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 13 ITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
+ I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 72 MKDGLTSLKQLPLTKEIMHP 91
++ T L L I+ P
Sbjct: 61 IQKESTLHLVLRLRGGIIEP 80
>sp|P0CH08|RL401_YEAST Ubiquitin-60S ribosomal protein L40 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPL40A PE=1 SV=1
Length = 128
Score = 36.6 bits (83), Expect = 0.44, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 13 ITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
+ I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 72 MKDGLTSLKQLPLTKEIMHP 91
++ T L L I+ P
Sbjct: 61 IQKESTLHLVLRLRGGIIEP 80
>sp|P14799|RS27A_NEUCR Ubiquitin-40S ribosomal protein S27a OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=ubi-3 PE=1 SV=4
Length = 154
Score = 36.2 bits (82), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMK 73
I VKT K +E+E ++ + K+ + K P+Q LIFAGK ++D LS++N++
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
>sp|P40909|RL40_CRYNJ Ubiquitin-60S ribosomal protein L40 OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC
MYA-565) GN=UBI1 PE=1 SV=2
Length = 129
Score = 36.2 bits (82), Expect = 0.54, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 13 ITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
+ I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 72 MKDGLTSLKQLPLTKEIMHP 91
++ T L L I+ P
Sbjct: 61 IQKESTLHLVLRLRGGIIEP 80
>sp|P42739|UBIQP_ACECL Polyubiquitin (Fragment) OS=Acetabularia cliftonii PE=3 SV=2
Length = 423
Score = 35.8 bits (81), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E +V + K + K P+Q LIFAGK ++D L+++N+
Sbjct: 120 IFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 178
Score = 35.8 bits (81), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E +V + K + K P+Q LIFAGK ++D L+++N+
Sbjct: 196 IFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 254
Score = 35.8 bits (81), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E +V + K + K P+Q LIFAGK ++D L+++N+
Sbjct: 272 IFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 330
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E +V + K + K P+Q +IFAGK ++D L+++N+
Sbjct: 348 IFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRIIFAGKQLEDGRTLADYNI 406
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E++ +V + K + K P+Q LIFAGK ++D L+++N+
Sbjct: 44 IFVKTLTGKTITLEVQSSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGLTLADYNI 102
>sp|P0CH07|RL402_SCHPO Ubiquitin-60S ribosomal protein L40 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubi2 PE=1 SV=1
Length = 128
Score = 35.8 bits (81), Expect = 0.61, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 13 ITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
+ I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 72 MKDGLTSLKQLPLTKEIMHP 91
++ T L L I+ P
Sbjct: 61 IQKESTLHLVLRLRGGIIEP 80
>sp|P0CH06|RL401_SCHPO Ubiquitin-60S ribosomal protein L40 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubi1 PE=1 SV=1
Length = 128
Score = 35.8 bits (81), Expect = 0.61, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 13 ITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
+ I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 72 MKDGLTSLKQLPLTKEIMHP 91
++ T L L I+ P
Sbjct: 61 IQKESTLHLVLRLRGGIIEP 80
>sp|P49633|RL40_ACACA Ubiquitin-60S ribosomal protein L40 OS=Acanthamoeba castellanii
PE=2 SV=2
Length = 128
Score = 35.8 bits (81), Expect = 0.63, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 13 ITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
+ I VKT K +E+E ++ + K+ + K P+Q LIFAGK ++D L+++N
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 72 MKDGLTSLKQLPLTKEIMHP 91
++ T L L ++ P
Sbjct: 61 IQKESTLHLVLRLRGGVIEP 80
>sp|P18101|RL40_DROME Ubiquitin-60S ribosomal protein L40 OS=Drosophila melanogaster
GN=RpL40 PE=1 SV=2
Length = 128
Score = 35.4 bits (80), Expect = 0.77, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 13 ITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
+ I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 72 MKDGLTSLKQLPLTKEIMHP 91
++ T L L I+ P
Sbjct: 61 IQKESTLHLVLRLRGGIIEP 80
>sp|P59669|UBIQP_GEOCY Polyubiquitin OS=Geodia cydonium PE=2 SV=2
Length = 457
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 3 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 79 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 155 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 231 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 307 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 365
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 383 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 441
>sp|P0CG71|UBIQ1_CAEEL Polyubiquitin-A OS=Caenorhabditis elegans GN=ubq-1 PE=2 SV=1
Length = 838
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 3 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 79 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 155 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 231 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 307 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 365
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 459 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 517
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 535 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 593
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 611 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 669
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 687 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 745
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 763 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 821
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 383 IFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 441
>sp|P62972|UBIQP_XENLA Polyubiquitin (Fragment) OS=Xenopus laevis PE=1 SV=2
Length = 167
Score = 35.4 bits (80), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 18 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 76
Score = 35.4 bits (80), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 94 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 152
>sp|P49636|RL40_NICSY Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris
GN=UBICEP52-7 PE=2 SV=2
Length = 128
Score = 35.4 bits (80), Expect = 0.83, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 13 ITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
+ I VKT K +E+E ++ + K + K P+Q LIFAGK ++D L+++N
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 72 MKDGLTSLKQLPLTKEIMHPKEEPTLMS 99
++ T L L I+ EP+LM+
Sbjct: 61 IQKESTLHLVLRLRGGII----EPSLMA 84
>sp|P0CG68|UBC_PIG Polyubiquitin-C OS=Sus scrofa GN=UBC PE=2 SV=1
Length = 533
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 79 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 155 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 231 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 307 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 365
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 383 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 441
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 459 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 517
Score = 35.4 bits (80), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + +K P+Q LIFAGK ++D LS++N+
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
>sp|P0CH28|UBC_BOVIN Polyubiquitin-C OS=Bos taurus GN=UBC PE=1 SV=1
Length = 690
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 79 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 155 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 231 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 307 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 365
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 383 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 441
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 459 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 517
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 535 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 593
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N+
Sbjct: 611 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 669
Score = 35.4 bits (80), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I VKT K +E+E ++ + K + +K P+Q LIFAGK ++D LS++N+
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
>sp|P0C276|RL40_SHEEP Ubiquitin-60S ribosomal protein L40 OS=Ovis aries GN=UBA52 PE=2
SV=2
Length = 128
Score = 35.4 bits (80), Expect = 0.88, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 13 ITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
+ I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 72 MKDGLTSLKQLPLTKEIMHP 91
++ T L L I+ P
Sbjct: 61 IQKESTLHLVLRLRGGIIEP 80
>sp|P62986|RL40_RAT Ubiquitin-60S ribosomal protein L40 OS=Rattus norvegicus GN=Uba52
PE=1 SV=2
Length = 128
Score = 35.4 bits (80), Expect = 0.88, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 13 ITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
+ I VKT K +E+E ++ + K + K P+Q LIFAGK ++D LS++N
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 72 MKDGLTSLKQLPLTKEIMHP 91
++ T L L I+ P
Sbjct: 61 IQKESTLHLVLRLRGGIIEP 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,038,271
Number of Sequences: 539616
Number of extensions: 6120455
Number of successful extensions: 20340
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 19525
Number of HSP's gapped (non-prelim): 717
length of query: 433
length of database: 191,569,459
effective HSP length: 120
effective length of query: 313
effective length of database: 126,815,539
effective search space: 39693263707
effective search space used: 39693263707
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)