Query psy11489
Match_columns 433
No_of_seqs 335 out of 1562
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 19:43:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0010|consensus 100.0 1.3E-69 2.9E-74 552.4 23.4 324 11-386 14-492 (493)
2 cd01790 Herp_N Homocysteine-re 99.7 4E-17 8.6E-22 131.8 7.1 66 13-78 2-74 (79)
3 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 1.1E-16 2.3E-21 127.8 8.3 67 12-78 1-68 (73)
4 cd01793 Fubi Fubi ubiquitin-li 99.7 1.6E-16 3.5E-21 126.7 8.3 65 13-78 1-65 (74)
5 cd01807 GDX_N ubiquitin-like d 99.7 1.9E-16 4.2E-21 126.2 8.1 66 13-78 1-67 (74)
6 cd01808 hPLIC_N Ubiquitin-like 99.7 2E-16 4.4E-21 125.0 7.8 66 13-78 1-66 (71)
7 TIGR00601 rad23 UV excision re 99.7 1.1E-15 2.4E-20 156.6 14.0 73 13-85 1-77 (378)
8 cd01797 NIRF_N amino-terminal 99.6 5.4E-16 1.2E-20 125.3 7.8 66 13-78 1-69 (78)
9 cd01804 midnolin_N Ubiquitin-l 99.6 8.3E-16 1.8E-20 124.1 8.2 66 12-78 1-67 (78)
10 cd01798 parkin_N amino-termina 99.6 1E-15 2.3E-20 120.6 7.5 64 15-78 1-65 (70)
11 cd01802 AN1_N ubiquitin-like d 99.6 2.3E-15 5E-20 127.9 9.0 69 10-78 25-94 (103)
12 KOG0011|consensus 99.6 5.9E-14 1.3E-18 138.5 20.0 74 13-86 1-77 (340)
13 cd01810 ISG15_repeat2 ISG15 ub 99.6 2.2E-15 4.7E-20 120.2 7.8 64 15-78 1-65 (74)
14 cd01813 UBP_N UBP ubiquitin pr 99.6 2E-15 4.3E-20 120.8 7.4 66 13-78 1-69 (74)
15 cd01809 Scythe_N Ubiquitin-lik 99.6 2.9E-15 6.3E-20 117.8 8.2 66 13-78 1-67 (72)
16 cd01792 ISG15_repeat1 ISG15 ub 99.6 2.3E-15 5.1E-20 121.9 7.8 66 13-78 3-71 (80)
17 cd01805 RAD23_N Ubiquitin-like 99.6 3.5E-15 7.7E-20 119.3 8.7 66 13-78 1-69 (77)
18 PTZ00044 ubiquitin; Provisiona 99.6 4E-15 8.6E-20 118.8 8.4 66 13-78 1-67 (76)
19 cd01794 DC_UbP_C dendritic cel 99.6 2.7E-15 5.9E-20 118.7 7.3 64 15-78 1-65 (70)
20 cd01806 Nedd8 Nebb8-like ubiq 99.6 6.5E-15 1.4E-19 117.0 8.6 66 13-78 1-67 (76)
21 cd01812 BAG1_N Ubiquitin-like 99.6 3.9E-15 8.5E-20 117.0 7.2 66 13-78 1-66 (71)
22 cd01803 Ubiquitin Ubiquitin. U 99.6 7.2E-15 1.6E-19 116.7 8.3 66 13-78 1-67 (76)
23 PF00240 ubiquitin: Ubiquitin 99.5 2E-14 4.2E-19 112.4 8.1 61 18-78 1-62 (69)
24 cd01796 DDI1_N DNA damage indu 99.5 1.5E-14 3.2E-19 114.6 6.8 64 15-78 1-67 (71)
25 cd01800 SF3a120_C Ubiquitin-li 99.5 7.7E-14 1.7E-18 111.9 6.8 61 18-78 4-64 (76)
26 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 5.6E-14 1.2E-18 112.2 4.9 49 30-78 19-70 (75)
27 smart00213 UBQ Ubiquitin homol 99.4 2.9E-13 6.4E-18 103.3 6.9 64 13-76 1-64 (64)
28 cd01763 Sumo Small ubiquitin-r 99.4 2.4E-12 5.2E-17 106.0 10.3 72 7-78 6-78 (87)
29 KOG0005|consensus 99.4 2.8E-13 6E-18 101.9 4.0 66 13-78 1-67 (70)
30 cd01799 Hoil1_N Ubiquitin-like 99.2 1.9E-11 4.1E-16 98.1 7.6 57 21-78 12-70 (75)
31 cd01814 NTGP5 Ubiquitin-like N 99.2 1.3E-11 2.8E-16 105.2 5.8 68 11-78 3-85 (113)
32 KOG0003|consensus 99.2 4.2E-12 9.2E-17 106.3 0.9 65 14-78 2-67 (128)
33 cd01769 UBL Ubiquitin-like dom 99.2 7.8E-11 1.7E-15 91.0 7.3 62 17-78 2-64 (69)
34 KOG0004|consensus 99.1 2.8E-11 6.2E-16 108.0 3.9 66 13-78 1-67 (156)
35 cd01789 Alp11_N Ubiquitin-like 99.1 3.6E-10 7.8E-15 92.6 8.9 66 13-78 2-76 (84)
36 PF11976 Rad60-SLD: Ubiquitin- 99.1 3.1E-10 6.8E-15 89.5 7.2 66 13-78 1-68 (72)
37 cd01795 USP48_C USP ubiquitin- 99.0 6.2E-10 1.3E-14 92.7 6.5 56 23-78 16-72 (107)
38 KOG4248|consensus 99.0 5E-10 1.1E-14 123.7 6.2 65 13-78 3-68 (1143)
39 PF14560 Ubiquitin_2: Ubiquiti 98.8 8.3E-09 1.8E-13 84.8 7.3 66 13-78 2-78 (87)
40 cd01801 Tsc13_N Ubiquitin-like 98.8 6.3E-09 1.4E-13 83.6 6.0 66 13-78 1-72 (77)
41 PF13881 Rad60-SLD_2: Ubiquiti 98.7 6.9E-08 1.5E-12 83.2 9.7 66 12-77 2-76 (111)
42 PLN02560 enoyl-CoA reductase 98.7 5.4E-08 1.2E-12 97.9 7.7 66 13-78 1-78 (308)
43 cd01788 ElonginB Ubiquitin-lik 98.5 2.9E-07 6.4E-12 78.6 7.3 66 13-78 3-75 (119)
44 KOG0001|consensus 98.5 8.1E-07 1.8E-11 68.0 8.5 64 15-78 2-66 (75)
45 PF11543 UN_NPL4: Nuclear pore 98.4 5.6E-07 1.2E-11 73.1 6.3 67 11-78 3-75 (80)
46 cd00196 UBQ Ubiquitin-like pro 98.3 2.9E-06 6.3E-11 61.5 7.0 58 21-78 7-64 (69)
47 KOG1872|consensus 98.2 3.5E-06 7.6E-11 87.4 7.6 67 12-78 3-70 (473)
48 KOG0010|consensus 98.2 2.1E-05 4.5E-10 82.3 12.7 46 371-417 327-372 (493)
49 KOG0006|consensus 98.1 4.9E-06 1.1E-10 82.3 5.2 56 23-78 15-70 (446)
50 KOG3493|consensus 97.9 5.2E-06 1.1E-10 63.9 1.7 66 13-78 2-68 (73)
51 KOG1769|consensus 97.8 0.00013 2.7E-09 61.2 9.2 69 10-78 18-87 (99)
52 PF08817 YukD: WXG100 protein 97.7 0.0001 2.2E-09 59.4 6.3 67 12-78 2-76 (79)
53 PF10302 DUF2407: DUF2407 ubiq 97.6 0.00013 2.7E-09 61.6 5.7 56 15-70 3-64 (97)
54 cd01811 OASL_repeat1 2'-5' oli 97.4 0.0005 1.1E-08 54.7 6.9 65 13-78 1-71 (80)
55 KOG4583|consensus 97.3 2.5E-05 5.4E-10 78.0 -1.8 69 10-78 7-82 (391)
56 KOG4495|consensus 97.1 0.00062 1.3E-08 56.6 4.6 61 13-73 3-65 (110)
57 PF00789 UBX: UBX domain; Int 97.0 0.0075 1.6E-07 48.5 9.5 70 9-78 3-78 (82)
58 COG5417 Uncharacterized small 96.8 0.0059 1.3E-07 48.6 7.0 67 12-78 4-78 (81)
59 smart00727 STI1 Heat shock cha 96.5 0.0028 6.1E-08 44.6 3.1 32 391-422 4-35 (41)
60 KOG3206|consensus 96.5 0.0078 1.7E-07 56.9 6.8 66 13-78 2-76 (234)
61 COG5227 SMT3 Ubiquitin-like pr 96.2 0.018 4E-07 47.5 6.8 68 11-78 23-91 (103)
62 cd00194 UBA Ubiquitin Associat 96.1 0.0043 9.4E-08 42.7 2.5 38 348-386 1-38 (38)
63 PF11470 TUG-UBL1: GLUT4 regul 96.1 0.014 3.1E-07 45.6 5.5 62 17-78 2-63 (65)
64 smart00166 UBX Domain present 96.0 0.039 8.4E-07 44.4 7.7 68 11-78 3-76 (80)
65 cd01770 p47_UBX p47-like ubiqu 95.8 0.052 1.1E-06 43.9 7.9 67 12-78 4-75 (79)
66 KOG0012|consensus 95.7 0.058 1.3E-06 55.0 9.4 57 22-78 13-71 (380)
67 PF00627 UBA: UBA/TS-N domain; 95.7 0.0073 1.6E-07 41.6 2.0 36 348-384 2-37 (37)
68 TIGR00601 rad23 UV excision re 95.5 0.012 2.5E-07 61.2 3.9 74 344-418 152-275 (378)
69 cd01767 UBX UBX (ubiquitin reg 95.5 0.073 1.6E-06 42.4 7.6 65 12-78 2-72 (77)
70 KOG1639|consensus 95.2 0.025 5.4E-07 55.0 4.4 66 13-78 1-74 (297)
71 cd01772 SAKS1_UBX SAKS1-like U 95.0 0.2 4.3E-06 40.4 8.6 67 11-78 3-75 (79)
72 smart00727 STI1 Heat shock cha 94.8 0.023 5E-07 39.8 2.5 19 177-195 8-30 (41)
73 KOG0013|consensus 94.6 0.024 5.3E-07 53.7 2.7 63 15-77 150-212 (231)
74 smart00165 UBA Ubiquitin assoc 94.6 0.026 5.6E-07 38.5 2.2 37 348-385 1-37 (37)
75 PF13019 Telomere_Sde2: Telome 94.4 0.2 4.3E-06 46.0 8.0 63 13-75 1-72 (162)
76 cd01774 Faf1_like2_UBX Faf1 ik 94.3 0.38 8.1E-06 39.5 8.8 68 10-78 2-80 (85)
77 PF15044 CLU_N: Mitochondrial 93.9 0.09 2E-06 42.3 4.3 51 28-78 1-53 (76)
78 cd06406 PB1_P67 A PB1 domain i 93.9 0.28 6.1E-06 39.9 7.1 46 12-60 4-49 (80)
79 PRK08364 sulfur carrier protei 93.2 0.7 1.5E-05 36.3 8.3 57 13-78 5-61 (70)
80 PLN02799 Molybdopterin synthas 92.6 0.59 1.3E-05 37.5 7.3 61 13-78 2-73 (82)
81 cd01771 Faf1_UBX Faf1 UBX doma 92.5 0.91 2E-05 36.8 8.3 67 11-78 3-75 (80)
82 PRK06437 hypothetical protein; 92.5 0.75 1.6E-05 35.9 7.5 47 23-78 12-58 (67)
83 smart00666 PB1 PB1 domain. Pho 92.5 0.41 8.8E-06 38.1 6.1 46 13-58 2-47 (81)
84 cd06407 PB1_NLP A PB1 domain i 92.1 0.47 1E-05 38.7 6.1 46 13-58 1-47 (82)
85 cd01773 Faf1_like1_UBX Faf1 ik 91.7 1.3 2.9E-05 36.2 8.3 68 10-78 3-76 (82)
86 KOG0011|consensus 91.6 0.14 3E-06 51.7 3.0 82 347-431 134-254 (340)
87 cd00754 MoaD Ubiquitin domain 91.3 0.78 1.7E-05 36.2 6.5 51 23-78 17-71 (80)
88 PF00564 PB1: PB1 domain; Int 91.1 0.86 1.9E-05 36.3 6.7 47 12-58 1-48 (84)
89 cd06408 PB1_NoxR The PB1 domai 91.1 1.1 2.4E-05 37.0 7.3 47 12-59 2-48 (86)
90 PF12754 Blt1: Cell-cycle cont 90.2 0.085 1.8E-06 53.0 0.0 66 8-73 74-160 (309)
91 cd05992 PB1 The PB1 domain is 89.9 1 2.2E-05 35.6 6.0 46 13-58 1-47 (81)
92 cd06396 PB1_NBR1 The PB1 domai 89.7 0.99 2.1E-05 36.9 5.8 46 13-64 1-48 (81)
93 PF08337 Plexin_cytopl: Plexin 89.6 0.87 1.9E-05 49.4 7.0 70 9-78 186-284 (539)
94 TIGR02958 sec_mycoba_snm4 secr 89.1 1.8 4E-05 46.1 9.0 67 12-78 2-75 (452)
95 PF14836 Ubiquitin_3: Ubiquiti 87.3 1.9 4.1E-05 35.8 6.0 55 23-78 15-75 (88)
96 PF14453 ThiS-like: ThiS-like 86.3 1.8 4E-05 33.0 5.0 43 25-78 9-51 (57)
97 cd06398 PB1_Joka2 The PB1 doma 85.7 2.4 5.3E-05 35.3 6.0 45 14-58 2-52 (91)
98 TIGR01687 moaD_arch MoaD famil 85.4 3.9 8.4E-05 33.1 7.0 52 23-78 17-79 (88)
99 TIGR01682 moaD molybdopterin c 85.3 4.6 0.0001 32.2 7.3 51 23-78 17-71 (80)
100 PRK06488 sulfur carrier protei 84.7 2.8 6.2E-05 32.1 5.6 52 19-78 5-56 (65)
101 cd06409 PB1_MUG70 The MUG70 pr 84.6 3 6.4E-05 34.5 5.9 43 14-56 2-48 (86)
102 PF02597 ThiS: ThiS family; I 84.1 3.1 6.8E-05 32.4 5.8 54 23-78 13-68 (77)
103 cd00565 ThiS ThiaminS ubiquiti 82.9 4 8.7E-05 31.3 5.8 49 25-78 8-56 (65)
104 PF09280 XPC-binding: XPC-bind 81.1 0.54 1.2E-05 36.1 0.3 27 187-219 19-46 (59)
105 PF09379 FERM_N: FERM N-termin 80.9 9 0.0002 30.1 7.4 57 17-73 1-65 (80)
106 KOG2982|consensus 80.1 2.6 5.6E-05 42.9 4.7 55 24-78 350-412 (418)
107 PF02505 MCR_D: Methyl-coenzym 79.5 4 8.6E-05 37.1 5.2 52 13-70 68-120 (153)
108 smart00295 B41 Band 4.1 homolo 79.2 14 0.0003 33.9 9.1 63 11-73 2-72 (207)
109 PF08783 DWNN: DWNN domain; I 77.2 7.4 0.00016 31.3 5.7 32 16-47 4-36 (74)
110 TIGR01683 thiS thiamine biosyn 77.2 8.2 0.00018 29.5 5.8 49 25-78 7-55 (64)
111 PF14533 USP7_C2: Ubiquitin-sp 76.6 7.8 0.00017 37.1 6.8 60 11-70 19-90 (213)
112 cd06397 PB1_UP1 Uncharacterize 76.6 7.2 0.00016 31.8 5.4 45 14-58 2-46 (82)
113 COG4055 McrD Methyl coenzyme M 76.0 6.1 0.00013 35.7 5.3 75 12-93 75-150 (165)
114 PF11620 GABP-alpha: GA-bindin 75.1 6 0.00013 32.6 4.6 56 23-78 4-59 (88)
115 TIGR03260 met_CoM_red_D methyl 74.8 6 0.00013 35.9 5.0 52 13-70 67-118 (150)
116 cd06411 PB1_p51 The PB1 domain 73.9 8.7 0.00019 31.2 5.2 36 23-58 8-43 (78)
117 smart00144 PI3K_rbd PI3-kinase 73.0 23 0.0005 30.2 8.1 68 11-78 16-99 (108)
118 PRK06083 sulfur carrier protei 72.7 18 0.00039 29.6 7.0 59 13-78 17-75 (84)
119 PF10209 DUF2340: Uncharacteri 71.3 6.5 0.00014 34.5 4.3 52 27-78 21-103 (122)
120 PF09280 XPC-binding: XPC-bind 71.2 1.4 3E-05 33.8 0.2 19 394-412 4-22 (59)
121 KOG2561|consensus 69.5 3.2 6.9E-05 43.9 2.3 55 24-78 52-106 (568)
122 PRK08053 sulfur carrier protei 67.5 35 0.00076 26.2 7.3 47 27-78 11-57 (66)
123 cd01768 RA RA (Ras-associating 67.4 35 0.00075 27.3 7.7 43 23-65 14-64 (87)
124 KOG4250|consensus 66.4 17 0.00038 40.6 7.3 44 22-65 325-368 (732)
125 PF00276 Ribosomal_L23: Riboso 66.3 12 0.00027 30.9 4.9 41 22-62 21-62 (91)
126 PRK07440 hypothetical protein; 66.1 29 0.00064 27.2 6.7 57 13-78 5-61 (70)
127 smart00455 RBD Raf-like Ras-bi 65.3 21 0.00045 28.2 5.7 43 16-58 3-46 (70)
128 PF14732 UAE_UbL: Ubiquitin/SU 64.5 6.5 0.00014 32.4 2.8 53 26-78 2-64 (87)
129 PTZ00380 microtubule-associate 63.9 15 0.00032 32.4 5.0 60 10-69 25-88 (121)
130 cd01760 RBD Ubiquitin-like dom 63.6 20 0.00044 28.5 5.4 44 15-58 2-46 (72)
131 PRK11130 moaD molybdopterin sy 63.3 40 0.00086 26.9 7.2 49 25-78 18-72 (81)
132 PRK06944 sulfur carrier protei 62.7 35 0.00076 25.8 6.5 47 26-78 10-56 (65)
133 KOG2086|consensus 60.8 16 0.00035 38.0 5.5 67 12-78 305-376 (380)
134 PRK01777 hypothetical protein; 60.1 51 0.0011 27.6 7.5 62 12-82 3-75 (95)
135 cd01787 GRB7_RA RA (RAS-associ 59.8 22 0.00047 29.4 5.0 62 15-76 5-78 (85)
136 KOG3439|consensus 58.8 40 0.00087 29.2 6.6 65 11-75 29-103 (116)
137 PRK05863 sulfur carrier protei 58.8 29 0.00063 26.6 5.4 50 21-78 7-56 (65)
138 PRK05738 rplW 50S ribosomal pr 56.8 26 0.00056 29.2 5.1 41 22-62 21-62 (92)
139 PF02017 CIDE-N: CIDE-N domain 56.3 22 0.00048 28.8 4.5 52 15-69 5-60 (78)
140 PRK05659 sulfur carrier protei 53.0 48 0.001 25.1 5.8 48 26-78 10-57 (66)
141 COG0089 RplW Ribosomal protein 52.5 30 0.00064 29.1 4.8 38 22-59 22-60 (94)
142 PF14451 Ub-Mut7C: Mut7-C ubiq 51.5 49 0.0011 26.9 5.8 47 23-78 24-71 (81)
143 PF00788 RA: Ras association ( 51.0 51 0.0011 26.2 6.0 54 12-65 4-68 (93)
144 cd01611 GABARAP Ubiquitin doma 50.5 44 0.00096 28.9 5.7 68 10-78 22-101 (112)
145 PF12436 USP7_ICP0_bdg: ICP0-b 48.9 37 0.00081 33.2 5.7 44 12-55 176-223 (249)
146 COG2104 ThiS Sulfur transfer p 48.6 1.1E+02 0.0024 24.1 7.2 49 25-78 11-59 (68)
147 PF11069 DUF2870: Protein of u 48.2 24 0.00053 29.8 3.6 25 53-78 3-27 (98)
148 PRK07696 sulfur carrier protei 47.8 66 0.0014 24.9 5.9 53 19-78 5-58 (67)
149 smart00266 CAD Domains present 47.7 46 0.001 26.8 5.0 54 15-69 3-58 (74)
150 cd06404 PB1_aPKC PB1 domain is 47.4 49 0.0011 27.2 5.1 44 13-56 1-45 (83)
151 cd01615 CIDE_N CIDE_N domain, 46.9 46 0.001 27.0 4.9 55 15-70 5-61 (78)
152 KOG4361|consensus 46.1 12 0.00026 38.6 1.8 69 10-78 59-133 (344)
153 KOG0007|consensus 45.6 9.6 0.00021 39.1 1.1 45 22-66 293-338 (341)
154 PF02991 Atg8: Autophagy prote 45.0 32 0.00068 29.4 3.9 60 10-69 14-81 (104)
155 PF12053 DUF3534: Domain of un 45.0 92 0.002 28.3 7.1 65 13-78 1-75 (145)
156 cd06539 CIDE_N_A CIDE_N domain 44.8 50 0.0011 26.9 4.8 52 15-69 5-60 (78)
157 CHL00030 rpl23 ribosomal prote 44.2 47 0.001 27.8 4.8 39 22-60 20-59 (93)
158 PF00794 PI3K_rbd: PI3-kinase 43.9 1.2E+02 0.0025 25.4 7.3 69 10-78 14-97 (106)
159 cd01782 AF6_RA_repeat1 Ubiquit 43.0 1.4E+02 0.003 25.9 7.4 54 12-65 23-89 (112)
160 PRK11840 bifunctional sulfur c 42.9 63 0.0014 33.2 6.3 48 26-78 10-57 (326)
161 smart00314 RA Ras association 42.4 1.4E+02 0.003 23.9 7.3 54 12-65 4-66 (90)
162 PF12436 USP7_ICP0_bdg: ICP0-b 42.2 39 0.00084 33.1 4.7 73 10-82 66-151 (249)
163 cd06410 PB1_UP2 Uncharacterize 41.4 73 0.0016 26.8 5.6 39 17-56 17-56 (97)
164 PF10790 DUF2604: Protein of U 41.2 1E+02 0.0022 24.2 5.8 57 22-78 6-66 (76)
165 cd01612 APG12_C Ubiquitin-like 40.0 1.1E+02 0.0023 25.2 6.2 65 13-78 2-76 (87)
166 cd01764 Urm1 Urm1-like ubuitin 39.6 63 0.0014 26.8 4.9 51 26-78 23-85 (94)
167 COG5100 NPL4 Nuclear pore prot 39.5 94 0.002 32.8 7.0 65 14-78 2-74 (571)
168 cd06536 CIDE_N_ICAD CIDE_N dom 39.3 66 0.0014 26.3 4.7 55 15-70 5-63 (80)
169 TIGR03636 L23_arch archaeal ri 37.9 70 0.0015 25.8 4.7 33 22-54 15-47 (77)
170 KOG4147|consensus 36.5 93 0.002 27.0 5.4 52 27-78 28-108 (127)
171 PF02845 CUE: CUE domain; Int 36.4 27 0.00059 24.3 1.9 38 348-386 1-40 (42)
172 cd06538 CIDE_N_FSP27 CIDE_N do 36.2 82 0.0018 25.7 4.8 55 15-70 5-60 (79)
173 cd06537 CIDE_N_B CIDE_N domain 35.7 82 0.0018 25.8 4.7 61 15-78 5-66 (81)
174 PRK14548 50S ribosomal protein 35.5 77 0.0017 26.0 4.7 33 22-54 22-54 (84)
175 COG5207 UBP14 Isopeptidase T [ 35.3 28 0.00061 37.7 2.5 41 349-390 559-603 (749)
176 KOG4146|consensus 34.6 2.4E+02 0.0052 23.8 7.3 48 30-78 34-92 (101)
177 PF06234 TmoB: Toluene-4-monoo 34.5 2.6E+02 0.0057 23.1 7.5 66 13-78 4-79 (85)
178 PRK12280 rplW 50S ribosomal pr 33.1 79 0.0017 29.1 4.8 40 22-61 23-63 (158)
179 PF14533 USP7_C2: Ubiquitin-sp 32.0 62 0.0014 30.9 4.2 48 24-71 135-194 (213)
180 COG5222 Uncharacterized conser 31.9 1.6E+02 0.0036 29.9 7.1 49 11-59 3-54 (427)
181 PF02196 RBD: Raf-like Ras-bin 31.7 1.7E+02 0.0036 23.0 5.9 51 15-65 3-56 (71)
182 cd01775 CYR1_RA Ubiquitin doma 27.8 2.1E+02 0.0046 24.2 6.1 47 16-62 6-58 (97)
183 PF08825 E2_bind: E2 binding d 27.7 76 0.0016 26.0 3.4 52 26-78 1-66 (84)
184 COG2914 Uncharacterized protei 27.5 3E+02 0.0065 23.3 6.8 70 12-86 3-79 (99)
185 KOG4842|consensus 27.0 11 0.00023 37.3 -2.0 56 13-69 4-59 (278)
186 KOG4248|consensus 25.8 42 0.00091 39.3 2.1 50 29-78 342-391 (1143)
187 KOG2507|consensus 25.7 1.4E+02 0.003 31.8 5.6 68 11-78 313-386 (506)
188 cd01766 Ufm1 Urm1-like ubiquit 25.0 3.7E+02 0.0081 21.7 6.8 54 25-78 19-73 (82)
189 KOG2660|consensus 24.7 49 0.0011 33.9 2.1 46 25-70 167-214 (331)
190 cd02413 40S_S3_KH K homology R 24.4 2.7E+02 0.0058 22.5 6.0 43 12-55 31-73 (81)
191 PF02192 PI3K_p85B: PI3-kinase 23.8 92 0.002 25.2 3.2 22 24-45 2-23 (78)
192 KOG3751|consensus 23.7 1.6E+02 0.0034 32.3 5.6 66 13-78 189-266 (622)
193 cd01818 TIAM1_RBD Ubiquitin do 23.4 2.3E+02 0.0051 23.0 5.3 40 17-56 4-44 (77)
194 KOG1364|consensus 22.9 77 0.0017 32.7 3.1 65 14-78 279-350 (356)
195 cd01776 Rin1_RA Ubiquitin doma 22.9 1.3E+02 0.0028 24.8 3.8 42 23-64 15-61 (87)
196 PF03671 Ufm1: Ubiquitin fold 22.6 3.6E+02 0.0078 21.7 6.1 55 24-78 18-73 (76)
197 smart00546 CUE Domain that may 22.2 82 0.0018 21.9 2.3 37 350-387 4-42 (43)
198 cd01777 SNX27_RA Ubiquitin dom 22.2 1.8E+02 0.004 24.1 4.6 40 13-52 2-42 (87)
199 cd06405 PB1_Mekk2_3 The PB1 do 21.3 2E+02 0.0043 23.4 4.5 44 13-59 1-44 (79)
200 PF11816 DUF3337: Domain of un 20.8 2.2E+02 0.0048 29.0 6.0 54 25-78 251-322 (331)
201 PF03658 Ub-RnfH: RnfH family 20.2 4.8E+02 0.01 21.5 6.7 68 13-85 1-75 (84)
No 1
>KOG0010|consensus
Probab=100.00 E-value=1.3e-69 Score=552.44 Aligned_cols=324 Identities=42% Similarity=0.666 Sum_probs=268.0
Q ss_pred ceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeEecccCcccccCC
Q psy11489 11 KLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTSLKQLPLTKEIMH 90 (433)
Q Consensus 11 ~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV~~~~~~~~~~~~ 90 (433)
+.|+|+||+.++|++|.|..+.||++||++|+.++++++|++||||+||||||++||..|||+||+||
T Consensus 14 ~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~Tv------------ 81 (493)
T KOG0010|consen 14 SLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTV------------ 81 (493)
T ss_pred ceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEE------------
Confidence 46999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccceeeEeeccCCCCCCC-------CCCC-------------CCCCccCCccccCCCCCCcCCCCCCCchhH
Q psy11489 91 PKEEPTLMSEQLHLVLVRWEVSGICH-------HENL-------------SNHNMKDGLTSLKQLPLTKEITHPKEEPIL 150 (433)
Q Consensus 91 ~~~~~~~~~~~~~lv~~~~~~~~~~~-------~~~p-------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 150 (433)
|||+|.+..+..++ .++| .....+++++|++..|....
T Consensus 82 ------------HLVik~~~~~~~~~t~ap~~t~~~P~~~st~~~a~~~p~~l~~~~~~~g~~~~~~~~~---------- 139 (493)
T KOG0010|consen 82 ------------HLVIKSQPRPTGTATSAPSSTASTPNNISTGRSASSNPFSLLTVGGFAGLSSLGLFAA---------- 139 (493)
T ss_pred ------------EEEeccCCCCCCccccccccccCCCCCCCCcccccCCcccccccccccccccCCcchh----------
Confidence 99999875543211 1111 11122334455444444332
Q ss_pred HHHHHHHHHHHHHHHHh-hcc--HHHHHh-cCChHHHhhhcCHHHHHHHHHHHHHHHHHHhhCCccc-ccccCccccccC
Q psy11489 151 MSEQLHLVLVRWEAQMQ-QML--PQFLQQ-MQNPEIQGMMANPEALSAIQQIQAGIEQLRTAAPGME-WNFRNPEINHML 225 (433)
Q Consensus 151 ~~~~~~~~~~~~~~~~~-~~~--P~~~~q-m~nP~~q~ll~NP~~l~~~~q~~~~~~~~i~~nP~l~-~~~~nPel~~~l 225 (433)
.|.+.+.+++ +.. |+++.+ |+||.||++|+||++||++ |.+||+++ +|++|||++|++
T Consensus 140 -------~F~~l~~~~q~~~~snpe~~~~~m~nP~vq~ll~Npd~mrq~----------I~anPqmq~lm~~npei~h~l 202 (493)
T KOG0010|consen 140 -------MFGELQSQMQNQLLSNPEALRQMMENPIVQSLLNNPDLMRQL----------IMANPQMQDLMQRNPEIGHLL 202 (493)
T ss_pred -------hcccccccchhccccCHHHHHHhhhChHHHHHhcChHHHHHH----------HhcCHHHHHHHhhCCcchhhh
Confidence 4555554454 333 999999 9999999999999999999 99999999 999999999999
Q ss_pred CCHHHHHHHHHHhhChHHHHHHHHHhHHHHhcCcCCCCCcchhhhhhhhhhhHHHHhhhhhccCCCCCCCCCCCCCCCCC
Q psy11489 226 NNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLNAATQQFSRNPYESNSSGGNPGRVK 305 (433)
Q Consensus 226 ~nPe~lrq~~~~~~nP~~~qe~~r~~d~al~~le~~PGG~n~l~~m~~~iq~pm~~a~~~~~~~np~a~~~~~~~~~~~~ 305 (433)
+||+.+||++|++|||+++||+||++||+|+++|++|||||+|+|||+||||||+|+++++|++|||+++.++.+++...
T Consensus 203 n~p~i~rQtle~arNP~m~qemmrn~d~a~SnlesiPgG~n~l~~my~diqdPm~Na~~~~~g~Npfasl~~~~~s~~~~ 282 (493)
T KOG0010|consen 203 NNPLILRQTLESARNPEMMQEMMRNQDRAMSNLESIPGGYNALRRMYTDIQDPMLNAASEQFGGNPFASLPGNQGSGTGG 282 (493)
T ss_pred cChHHHHHHHHhccCHHHHHHHHhhccccccChhcCccHHHHHHHHhhhccchhhhhcccccCCCCcccccCccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997766544334
Q ss_pred CCCCCCcCCCCCCCCCCCCCC--------CCCCCC------------CCC------------------------------
Q psy11489 306 APFRRSKRYLGPRQCARPSSS--------LSTPGL------------ANN------------------------------ 335 (433)
Q Consensus 306 ~p~~~~n~~~lpnp~~~~~~~--------~~~~g~------------~~~------------------------------ 335 (433)
.+.. ||+.|+||||+..... ..+.|. +..
T Consensus 283 ~~~~-eN~~plPn~~~~~~~~s~~a~~~~~~t~G~~s~~~~~n~s~~~~~~~~a~lq~i~~n~~~~~~l~s~~~~~m~~~ 361 (493)
T KOG0010|consen 283 SPSP-ENNSPLPNPWAQASTTSSPAANPTPGTSGGTSSNGNSNPSQLGSPGMQAGLQMITENPSLLQQLLSPYIRSMFQS 361 (493)
T ss_pred CCCc-ccCCCCCCcccCCCCCCCCCCCCCcCccCccccCCCCCccccCCcchhhhhhccccChhhhhhccchhhHHHHhh
Confidence 4455 8999999999863111 000110 000
Q ss_pred ---CC---------------------------------------------------------------------------
Q psy11489 336 ---QG--------------------------------------------------------------------------- 337 (433)
Q Consensus 336 ---~~--------------------------------------------------------------------------- 337 (433)
.+
T Consensus 362 ~s~~P~~a~~~~~mq~p~~~~~~~np~a~~ai~qiqq~~~~~~~~a~~l~~~~s~~~~~~n~~p~~~~~~~~~~~~~~~~ 441 (493)
T KOG0010|consen 362 ASQNPLQAAQLRQMQNPDVLRAMSNPRAMQAIRQIQQGLQTLAREAPGLVPGQSGASGPINGSPTLLMQLFGSLMLQGLR 441 (493)
T ss_pred hccCchhhhccccccCchHhhhhcChHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCCchhhhhhhhhhhhhhcc
Confidence 00
Q ss_pred --CCCCCCchhhhHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhc
Q psy11489 338 --GNAQAPPEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMA 386 (433)
Q Consensus 338 --~~~~~~pe~~y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~ 386 (433)
....++||+||++||+||++|||.|+++|++|++.++|++++++++|+.
T Consensus 442 ~~n~~~~~pe~r~q~QLeQL~~MGF~nre~nlqAL~atgGdi~aAverll~ 492 (493)
T KOG0010|consen 442 GSNQQTVPPEERYQTQLEQLNDMGFLDREANLQALRATGGDINAAVERLLG 492 (493)
T ss_pred ccCcCCCCchHHHHHHHHHHHhcCCccHHHHHHHHHHhcCcHHHHHHHHhc
Confidence 0145689999999999999999999999999999999999999999874
No 2
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.69 E-value=4e-17 Score=131.79 Aligned_cols=66 Identities=21% Similarity=0.396 Sum_probs=59.2
Q ss_pred EEEEEEcCCC-e--EEEEeCCCCcHHHHHHHHHHhhC--CCcCCeEEEeCCeecCCCCCcccCC--CCCCCeE
Q psy11489 13 ITIVVKTPKE-K--QNIEIEEDASVTDFKEAVAKKFN--ALPEQLCLIFAGKIMKDHENLSNHN--MKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~-~--~~i~V~~~~TV~~LK~~I~~~~~--ip~~~qrLIf~GkiLkD~~tLs~~g--I~dg~tV 78 (433)
|+|+||++++ + |+|+|++++||++||++|++..+ +++++|||||+||+|+|++||++|. |++|+||
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~ti 74 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMV 74 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceE
Confidence 7999999864 5 55666899999999999999874 5689999999999999999999996 9999999
No 3
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.68 E-value=1.1e-16 Score=127.77 Aligned_cols=67 Identities=25% Similarity=0.424 Sum_probs=64.0
Q ss_pred eEEEEEEcC-CCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTP-KEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~-~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.|+|+||+. +.++.++|++++||++||++|+++.++++++|||||+||+|+|+.+|++|||++|++|
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv 68 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNL 68 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEE
Confidence 378999997 5689999999999999999999999999999999999999999999999999999999
No 4
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.67 E-value=1.6e-16 Score=126.69 Aligned_cols=65 Identities=22% Similarity=0.316 Sum_probs=62.4
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+. ..++++|++++||++||++|+++.++|+++|||||+||+|+|+.+|++|+|++++||
T Consensus 1 mqi~vk~~-~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl 65 (74)
T cd01793 1 MQLFVRAQ-NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTL 65 (74)
T ss_pred CEEEEECC-CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEE
Confidence 57999985 678999999999999999999999999999999999999999999999999999999
No 5
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.67 E-value=1.9e-16 Score=126.17 Aligned_cols=66 Identities=26% Similarity=0.406 Sum_probs=63.0
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.+ ..+.++|++++||++||++|++++|+++++|||+|+||+|+|+.+|++|+|++|++|
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l 67 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKL 67 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 589999865 578999999999999999999999999999999999999999999999999999999
No 6
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.66 E-value=2e-16 Score=125.03 Aligned_cols=66 Identities=68% Similarity=0.989 Sum_probs=63.1
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+..++++|+|++++||.+||++|++++++++++|||+|+||+|+|+.+|++|||++|++|
T Consensus 1 ~~i~vk~~~g~~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl 66 (71)
T cd01808 1 IKVTVKTPKDKEEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTV 66 (71)
T ss_pred CEEEEEcCCCCEEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEE
Confidence 579999987677999999999999999999999999999999999999999999999999999999
No 7
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=1.1e-15 Score=156.63 Aligned_cols=73 Identities=25% Similarity=0.371 Sum_probs=66.8
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhC---CCcCCeEEEeCCeecCCCCCcccCCCCCCCeEecccCcc
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFN---ALPEQLCLIFAGKIMKDHENLSNHNMKDGLTSLKQLPLT 85 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~---ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV~~~~~~~ 85 (433)
|+|+||+.+ ++|.|+|++++||.+||++|+++.+ +++++|||||+||+|+|+++|++|+|++|++|++.+..-
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKP 77 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccC
Confidence 689999975 5899999999999999999999998 999999999999999999999999999999996665543
No 8
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.64 E-value=5.4e-16 Score=125.28 Aligned_cols=66 Identities=24% Similarity=0.345 Sum_probs=61.9
Q ss_pred EEEEEEcCCC-e-EEEE-eCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKE-K-QNIE-IEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~-~-~~i~-V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.++ + +.|+ |+++.||.+||++|++++++++++|||||+||+|+|+.+|++|||++|++|
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i 69 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDII 69 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEE
Confidence 6899999865 4 6885 899999999999999999999999999999999999999999999999999
No 9
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.63 E-value=8.3e-16 Score=124.06 Aligned_cols=66 Identities=14% Similarity=0.340 Sum_probs=62.7
Q ss_pred eEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.|+|+||+.+ ..++|+|++++||++||++|+++.++++++|||+|+||+|+|+ +|++|||++|++|
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i 67 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKL 67 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEE
Confidence 3799999974 5799999999999999999999999999999999999999999 9999999999999
No 10
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.62 E-value=1e-15 Score=120.57 Aligned_cols=64 Identities=27% Similarity=0.477 Sum_probs=61.0
Q ss_pred EEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 15 IVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 15 V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+||+.+ ..+.++|++++||++||++|+++.|+++++|||+|+||+|+|+.+|++|+|++|++|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl 65 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSIL 65 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEE
Confidence 5788874 589999999999999999999999999999999999999999999999999999999
No 11
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.61 E-value=2.3e-15 Score=127.87 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=65.4
Q ss_pred CceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
...|+|+||+.+ .++.|+|++++||.+||++|+++.|+++++|||||+||+|+|+.+|++|+|++|++|
T Consensus 25 ~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL 94 (103)
T cd01802 25 YDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTL 94 (103)
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEE
Confidence 346999999975 579999999999999999999999999999999999999999999999999999999
No 12
>KOG0011|consensus
Probab=99.61 E-value=5.9e-14 Score=138.47 Aligned_cols=74 Identities=27% Similarity=0.388 Sum_probs=68.4
Q ss_pred EEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhC--CCcCCeEEEeCCeecCCCCCcccCCCCCCCeEecccCccc
Q psy11489 13 ITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFN--ALPEQLCLIFAGKIMKDHENLSNHNMKDGLTSLKQLPLTK 86 (433)
Q Consensus 13 i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~--ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV~~~~~~~~ 86 (433)
|+|+||+.++ +|+|+|.++.||.++|++|+...| +|++.|+|||+||+|+|+.|+++|+|+++..|.+.++..+
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 6899999875 899999999999999999999887 9999999999999999999999999999999877776665
No 13
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.60 E-value=2.2e-15 Score=120.19 Aligned_cols=64 Identities=27% Similarity=0.425 Sum_probs=61.2
Q ss_pred EEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 15 IVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 15 V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+||+.. +.+.|+|+++.||.+||++|+++.++|+++|||+|+||+|+|+.+|++|||+++++|
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl 65 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTV 65 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEE
Confidence 6799975 578999999999999999999999999999999999999999999999999999999
No 14
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.60 E-value=2e-15 Score=120.78 Aligned_cols=66 Identities=21% Similarity=0.292 Sum_probs=64.2
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEe---CCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIF---AGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf---~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.+..|+|+|++++||.+||++|++.++||+++||||| +||+|+|+.+|++|+|++|++|
T Consensus 1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i 69 (74)
T cd01813 1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKI 69 (74)
T ss_pred CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEE
Confidence 68999999999999999999999999999999999999999996 9999999999999999999999
No 15
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.60 E-value=2.9e-15 Score=117.78 Aligned_cols=66 Identities=38% Similarity=0.572 Sum_probs=63.3
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.+ ..++++|++++||.+||++|++++++++++|||+|+|++|+|+.+|++|+|++|++|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l 67 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTI 67 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEE
Confidence 689999975 589999999999999999999999999999999999999999999999999999999
No 16
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.60 E-value=2.3e-15 Score=121.88 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=63.2
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEE--EeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCL--IFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrL--If~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.+ ..+.++|+++.||.+||++|++++++++++||| +|+|++|+|+++|++|||++|++|
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l 71 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTV 71 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEE
Confidence 789999975 578999999999999999999999999999999 999999999999999999999999
No 17
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.60 E-value=3.5e-15 Score=119.25 Aligned_cols=66 Identities=32% Similarity=0.488 Sum_probs=62.8
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCC--CcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNA--LPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~i--p~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.+ ..+.|+|++++||.+||++|++++++ ++++|||+|+|++|+|+.+|++|||++|++|
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i 69 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFV 69 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEE
Confidence 589999875 58999999999999999999999999 9999999999999999999999999999999
No 18
>PTZ00044 ubiquitin; Provisional
Probab=99.59 E-value=4e-15 Score=118.77 Aligned_cols=66 Identities=33% Similarity=0.426 Sum_probs=63.1
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.+ ..+.++|++++||++||++|++++++|+++|||+|+|+.|+|+.+|++|+|++|++|
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i 67 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTI 67 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEE
Confidence 579999965 579999999999999999999999999999999999999999999999999999999
No 19
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.59 E-value=2.7e-15 Score=118.72 Aligned_cols=64 Identities=14% Similarity=0.290 Sum_probs=60.4
Q ss_pred EEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 15 IVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 15 V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
++||..+ ..+.++|++++||.+||++|+++.++|+++|||||+||+|+|+.+|++|+|++|++|
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv 65 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVV 65 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEE
Confidence 3578864 589999999999999999999999999999999999999999999999999999999
No 20
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.58 E-value=6.5e-15 Score=116.97 Aligned_cols=66 Identities=32% Similarity=0.436 Sum_probs=63.0
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.+ ..+.++|+++.||++||++|++++++|+++|||+|+|+.|+|+.+|++|+|++|++|
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i 67 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVL 67 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEE
Confidence 579999975 578999999999999999999999999999999999999999999999999999999
No 21
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.58 E-value=3.9e-15 Score=116.96 Aligned_cols=66 Identities=32% Similarity=0.421 Sum_probs=63.9
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.+..++++|++++||.+||++|++++++++++|||+|+|+.|.|+.+|++|||++|++|
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l 66 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKV 66 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEE
Confidence 689999997789999999999999999999999999999999999999999999999999999999
No 22
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.57 E-value=7.2e-15 Score=116.72 Aligned_cols=66 Identities=32% Similarity=0.458 Sum_probs=63.1
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.+ ..+.|+|++++||++||++|++++++|+++|||+|+|+.|+|+.+|++|+|++|++|
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i 67 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEE
Confidence 579999975 578999999999999999999999999999999999999999999999999999999
No 23
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.54 E-value=2e-14 Score=112.45 Aligned_cols=61 Identities=36% Similarity=0.552 Sum_probs=57.6
Q ss_pred EcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 18 KTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 18 Kt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+.+ ..++|+|++++||.+||++|++++++|+++|+|+|+||+|+|+.+|++|||++|++|
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I 62 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTI 62 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEE
Confidence 4544 479999999999999999999999999999999999999999999999999999999
No 24
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.53 E-value=1.5e-14 Score=114.64 Aligned_cols=64 Identities=25% Similarity=0.345 Sum_probs=59.6
Q ss_pred EEEEcC-CC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCC-CCcccCCCCCCCeE
Q psy11489 15 IVVKTP-KE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDH-ENLSNHNMKDGLTS 78 (433)
Q Consensus 15 V~VKt~-~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~-~tLs~~gI~dg~tV 78 (433)
|+||+. ++ .+.|+|++++||.+||++|++++|+|+++|||||+||+|+|+ .+|++|||++|++|
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l 67 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLV 67 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEE
Confidence 578887 54 699999999999999999999999999999999999999998 58999999999999
No 25
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.48 E-value=7.7e-14 Score=111.89 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=58.0
Q ss_pred EcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 18 KTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 18 Kt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|..+..++|+|++++||.+||++|++.+++|+++|+|+|+|++|+|+.+|++|+|++|++|
T Consensus 4 ~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l 64 (76)
T cd01800 4 KLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTII 64 (76)
T ss_pred ccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEE
Confidence 4456789999999999999999999999999999999999999999999999999999999
No 26
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.46 E-value=5.6e-14 Score=112.20 Aligned_cols=49 Identities=27% Similarity=0.407 Sum_probs=45.8
Q ss_pred CCCcHHHHHHHHHHhh--CC-CcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 30 EDASVTDFKEAVAKKF--NA-LPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 30 ~~~TV~~LK~~I~~~~--~i-p~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.++||.+||++|++++ ++ ++++|||||+||+|+|+.||++|||++|++|
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstl 70 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTI 70 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEE
Confidence 3789999999999996 46 4999999999999999999999999999999
No 27
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.43 E-value=2.9e-13 Score=103.28 Aligned_cols=64 Identities=31% Similarity=0.511 Sum_probs=60.5
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCC
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGL 76 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~ 76 (433)
|+|+||+.+..+.++|+++.||.+||++|++++++++++|||+|+|+.|+|+.+|++|||++|+
T Consensus 1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 5799999877789999999999999999999999999999999999999999999999999985
No 28
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.39 E-value=2.4e-12 Score=106.01 Aligned_cols=72 Identities=17% Similarity=0.279 Sum_probs=67.4
Q ss_pred cCCCceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 7 ESEKKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 7 ~~~~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
...+..|+|+||+.. .++.|+|..++||..||++++++.+++++++||+|.|+.|+|++|+.+|+|++|++|
T Consensus 6 ~~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I 78 (87)
T cd01763 6 GEISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEI 78 (87)
T ss_pred CCCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEE
Confidence 345678999999975 578999999999999999999999999999999999999999999999999999999
No 29
>KOG0005|consensus
Probab=99.39 E-value=2.8e-13 Score=101.89 Aligned_cols=66 Identities=35% Similarity=0.436 Sum_probs=62.6
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|.|+||+.. +.++|+|+++++|+.+|+.|+++.|||+.+|||||.||.+.|+.|-.+|++.-|+++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVl 67 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVL 67 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeE
Confidence 468899975 579999999999999999999999999999999999999999999999999999999
No 30
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.25 E-value=1.9e-11 Score=98.11 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=53.2
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecC-CCCCcccCCCC-CCCeE
Q psy11489 21 KEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMK-DHENLSNHNMK-DGLTS 78 (433)
Q Consensus 21 ~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLk-D~~tLs~~gI~-dg~tV 78 (433)
++++.|+|++++||++||++|++++|+|+++||| |.|+.|. |+.+|++|||+ +|++|
T Consensus 12 ~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~ 70 (75)
T cd01799 12 TVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSA 70 (75)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEE
Confidence 4589999999999999999999999999999999 9999996 55799999999 88999
No 31
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.23 E-value=1.3e-11 Score=105.24 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=56.4
Q ss_pred ceEEEEEEcCCC--eEEEEeCCCCcHHHHHHHHHHhh-----C--CCcCCeEEEeCCeecCCCCCcccCC------CCCC
Q psy11489 11 KLITIVVKTPKE--KQNIEIEEDASVTDFKEAVAKKF-----N--ALPEQLCLIFAGKIMKDHENLSNHN------MKDG 75 (433)
Q Consensus 11 ~~i~V~VKt~~~--~~~i~V~~~~TV~~LK~~I~~~~-----~--ip~~~qrLIf~GkiLkD~~tLs~~g------I~dg 75 (433)
+.|.|++|..++ .-.+.+++++||.+||++|++.. + .++++|||||+||+|+|+.||++|+ +...
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 457888887653 34556779999999999999555 3 4499999999999999999999999 7777
Q ss_pred CeE
Q psy11489 76 LTS 78 (433)
Q Consensus 76 ~tV 78 (433)
.|+
T Consensus 83 ~Tm 85 (113)
T cd01814 83 ITM 85 (113)
T ss_pred eEE
Confidence 888
No 32
>KOG0003|consensus
Probab=99.19 E-value=4.2e-12 Score=106.27 Aligned_cols=65 Identities=31% Similarity=0.453 Sum_probs=60.5
Q ss_pred EEEEEc-CCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 14 TIVVKT-PKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 14 ~V~VKt-~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.++||+ .+.++.++|++++||..||.+|..+.|+|++++||||+||+|+|..||++|+|..-+||
T Consensus 2 ~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl 67 (128)
T KOG0003|consen 2 QIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 67 (128)
T ss_pred cEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhh
Confidence 355665 46789999999999999999999999999999999999999999999999999999999
No 33
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.17 E-value=7.8e-11 Score=91.00 Aligned_cols=62 Identities=40% Similarity=0.575 Sum_probs=58.2
Q ss_pred EEcC-CCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 17 VKTP-KEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 17 VKt~-~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
||.. +..+.+++++++||.+||++|++++++++++++|+|+||.|+|+.+|.+|+|++|++|
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i 64 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTL 64 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEE
Confidence 6665 4578899999999999999999999999999999999999999999999999999999
No 34
>KOG0004|consensus
Probab=99.14 E-value=2.8e-11 Score=108.04 Aligned_cols=66 Identities=32% Similarity=0.460 Sum_probs=62.7
Q ss_pred EEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|.|+||+... .+.++|+.++||..+|.+|++..+||+++|||||.|+.|.|..+|+||+|+.-+||
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl 67 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceE
Confidence 4689999765 78899999999999999999999999999999999999999999999999999999
No 35
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.11 E-value=3.6e-10 Score=92.56 Aligned_cols=66 Identities=14% Similarity=0.295 Sum_probs=56.9
Q ss_pred EEEEEEcCCC--eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEE-EeCCe-----ec-CCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKE--KQNIEIEEDASVTDFKEAVAKKFNALPEQLCL-IFAGK-----IM-KDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~--~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrL-If~Gk-----iL-kD~~tLs~~gI~dg~tV 78 (433)
++|.|++... ..+..+++++||.+||++|+..+|++++.||| +|.|+ .| +|+.+|++|++++|++|
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~I 76 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRI 76 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEE
Confidence 6777887643 35666999999999999999999999999999 58998 46 56669999999999999
No 36
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.08 E-value=3.1e-10 Score=89.46 Aligned_cols=66 Identities=26% Similarity=0.414 Sum_probs=60.9
Q ss_pred EEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCc-CCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALP-EQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~-~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+|++.++ .+.+.|.++.+|..|++.++++.+++. +.++|+|.|+.|.+++|+++|||++|++|
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~I 68 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTI 68 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEE
Confidence 6899999764 789999999999999999999999999 99999999999999999999999999999
No 37
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.01 E-value=6.2e-10 Score=92.66 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=53.4
Q ss_pred eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCC-CcccCCCCCCCeE
Q psy11489 23 KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHE-NLSNHNMKDGLTS 78 (433)
Q Consensus 23 ~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~-tLs~~gI~dg~tV 78 (433)
...++|.+++||.+||.+|..++++++++|+|+|.|+.|.|+. ||++|||..|++|
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl 72 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVI 72 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEE
Confidence 4678899999999999999999999999999999999999886 9999999999999
No 38
>KOG4248|consensus
Probab=98.98 E-value=5e-10 Score=123.72 Aligned_cols=65 Identities=23% Similarity=0.455 Sum_probs=62.0
Q ss_pred EEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+.|+|||.+. ..+|.|...+||++||++|.++.+|+.+.|||||.||+|.|++++.+|+| ||-+|
T Consensus 3 ~~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~ 68 (1143)
T KOG4248|consen 3 PNVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVI 68 (1143)
T ss_pred cceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEE
Confidence 4699999876 68899999999999999999999999999999999999999999999999 99999
No 39
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.84 E-value=8.3e-09 Score=84.77 Aligned_cols=66 Identities=15% Similarity=0.339 Sum_probs=55.2
Q ss_pred EEEEEEcCCC---eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeC-C------eecC-CCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKE---KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFA-G------KIMK-DHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~---~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~-G------kiLk-D~~tLs~~gI~dg~tV 78 (433)
|+|.|.+... ..+..++.++||.+||.+|+..+|++++.|||.|. . ..+. |+.+|++||+++|.+|
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i 78 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRI 78 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEE
Confidence 7888888653 68899999999999999999999999999999987 1 1344 4569999999999999
No 40
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.83 E-value=6.3e-09 Score=83.62 Aligned_cols=66 Identities=23% Similarity=0.322 Sum_probs=53.9
Q ss_pred EEEEEEcCC-CeE-EEEe-CCCCcHHHHHHHHHHhhC-CCcCCeEE--EeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQ-NIEI-EEDASVTDFKEAVAKKFN-ALPEQLCL--IFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~-~i~V-~~~~TV~~LK~~I~~~~~-ip~~~qrL--If~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+.|.+|..+ ..+ .+++ +++.||.+||+.|++.++ +++++||| +++|++|+|+++|.+|||++|++|
T Consensus 1 ~~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~l 72 (77)
T cd01801 1 LEILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATL 72 (77)
T ss_pred CeeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEE
Confidence 356677666 432 2333 478999999999999986 57899887 599999999999999999999998
No 41
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.73 E-value=6.9e-08 Score=83.17 Aligned_cols=66 Identities=26% Similarity=0.486 Sum_probs=49.4
Q ss_pred eEEEEEEcCC-C-eEEEEeCCCCcHHHHHHHHHHhh----C---CCcCCeEEEeCCeecCCCCCcccCCCCCCCe
Q psy11489 12 LITIVVKTPK-E-KQNIEIEEDASVTDFKEAVAKKF----N---ALPEQLCLIFAGKIMKDHENLSNHNMKDGLT 77 (433)
Q Consensus 12 ~i~V~VKt~~-~-~~~i~V~~~~TV~~LK~~I~~~~----~---ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~t 77 (433)
.|.|+++..+ . ...+.+++++||.+||+.|.... . ..+..+||||.||+|.|..||+++++..|.+
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~ 76 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGET 76 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSE
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCC
Confidence 3667777644 3 57888999999999999998654 1 2446899999999999999999999988774
No 42
>PLN02560 enoyl-CoA reductase
Probab=98.65 E-value=5.4e-08 Score=97.87 Aligned_cols=66 Identities=24% Similarity=0.469 Sum_probs=56.8
Q ss_pred EEEEEEcCC-CeE---EEEeCCCCcHHHHHHHHHHhhCC-CcCCeEEEeC---C----eecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQ---NIEIEEDASVTDFKEAVAKKFNA-LPEQLCLIFA---G----KIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~---~i~V~~~~TV~~LK~~I~~~~~i-p~~~qrLIf~---G----kiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||..+ +.+ +|+|++++||+|||++|+++.++ ++++|||++. | +.|+|+++|+++||++|++|
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstL 78 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTV 78 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceE
Confidence 467788653 343 79999999999999999999986 8999999982 4 48999999999999999999
No 43
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.52 E-value=2.9e-07 Score=78.58 Aligned_cols=66 Identities=17% Similarity=0.273 Sum_probs=58.7
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCC-------CCCCeE
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM-------KDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI-------~dg~tV 78 (433)
+-+.||-.+-++-+++.++.||.+||++|+.....|+++|||+-.+.+|.|++||++||+ +...+|
T Consensus 3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~v 75 (119)
T cd01788 3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATV 75 (119)
T ss_pred eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeE
Confidence 456677666678889999999999999999999999999999977789999999999999 667788
No 44
>KOG0001|consensus
Probab=98.48 E-value=8.1e-07 Score=68.00 Aligned_cols=64 Identities=28% Similarity=0.389 Sum_probs=58.6
Q ss_pred EEEEcC-CCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 15 IVVKTP-KEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 15 V~VKt~-~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+.|++. +..+.+++....+|..+|.+|+...+++.++++++|.|+.|.|+.+|.+|+|..+.++
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~ 66 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTL 66 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEE
Confidence 345554 4578899999999999999999999999999999999999999999999999999999
No 45
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.42 E-value=5.6e-07 Score=73.13 Aligned_cols=67 Identities=18% Similarity=0.327 Sum_probs=43.8
Q ss_pred ceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCe----ec--CCCCCcccCCCCCCCeE
Q psy11489 11 KLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGK----IM--KDHENLSNHNMKDGLTS 78 (433)
Q Consensus 11 ~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~Gk----iL--kD~~tLs~~gI~dg~tV 78 (433)
+.|-|.|++.++.+.|+|++++||.+||++|++.++++.+.+.|. ..+ .| .+..+|+++||+.||.|
T Consensus 3 ~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~-~~~~~~~~l~s~~~~tl~~lglkHGdml 75 (80)
T PF11543_consen 3 SSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLS-KDRNNKEELKSSDSKTLSSLGLKHGDML 75 (80)
T ss_dssp ---EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---B-SSGGGGGCSSS-TT-CCCCT---TT-EE
T ss_pred ccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEE-ecCCCCcccccCCcCCHHHcCCCCccEE
Confidence 358899999999999999999999999999999999999988774 322 44 35569999999999999
No 46
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.28 E-value=2.9e-06 Score=61.50 Aligned_cols=58 Identities=31% Similarity=0.461 Sum_probs=54.3
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 21 KEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 21 ~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+....+.+..+.||.+||++|.++++++++.++|++.|+.+++...+.++++.++++|
T Consensus 7 ~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i 64 (69)
T cd00196 7 GKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDEL 64 (69)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEE
Confidence 4567888889999999999999999999999999999999999998889999999999
No 47
>KOG1872|consensus
Probab=98.19 E-value=3.5e-06 Score=87.45 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=64.1
Q ss_pred eEEEEEEcCCCeEEEE-eCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTPKEKQNIE-IEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~~~~~i~-V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..+|.||+.++++.++ ++.++|+..||.++...++++|++||++++|+.++|+-.+..++||+|.+|
T Consensus 3 ~~~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~l 70 (473)
T KOG1872|consen 3 SDTVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETL 70 (473)
T ss_pred cceEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEE
Confidence 3579999999999988 999999999999999999999999999999999999999999999999999
No 48
>KOG0010|consensus
Probab=98.16 E-value=2.1e-05 Score=82.29 Aligned_cols=46 Identities=37% Similarity=0.708 Sum_probs=42.4
Q ss_pred ccCCcchHHHHHhhhcChHHHHhccCcHHHHHHHHHHhcCcHHHHhh
Q psy11489 371 LFGNAGMQSMMQQMMANPQLMQNMMQAPYMQSMLQAMSADPSIAQRV 417 (433)
Q Consensus 371 ~~~~g~~~~a~~~l~~~P~~~~~m~~~P~~~~mmq~l~sNP~~~~q~ 417 (433)
+++..++.+.++.+..||.+++++++ ||+++||+.+.+||.++.++
T Consensus 327 ~~~~~~~~a~lq~i~~n~~~~~~l~s-~~~~~m~~~~s~~P~~a~~~ 372 (493)
T KOG0010|consen 327 QLGSPGMQAGLQMITENPSLLQQLLS-PYIRSMFQSASQNPLQAAQL 372 (493)
T ss_pred ccCCcchhhhhhccccChhhhhhccc-hhhHHHHhhhccCchhhhcc
Confidence 56788999999999999999999999 99999999999999997653
No 49
>KOG0006|consensus
Probab=98.05 E-value=4.9e-06 Score=82.32 Aligned_cols=56 Identities=29% Similarity=0.476 Sum_probs=52.3
Q ss_pred eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 23 KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 23 ~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.+.|+|+.+.+|.+||+.|+++.|+|+|++|+||.||.|.|+.|+..+.+..-+.+
T Consensus 15 ~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~ 70 (446)
T KOG0006|consen 15 GLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSAT 70 (446)
T ss_pred ceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchh
Confidence 58899999999999999999999999999999999999999999998888777777
No 50
>KOG3493|consensus
Probab=97.90 E-value=5.2e-06 Score=63.89 Aligned_cols=66 Identities=27% Similarity=0.427 Sum_probs=57.7
Q ss_pred EEEEEEc-CCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKT-PKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt-~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|.|.+.. .+++..|.+.+++||++||+.|+.++|..++.++|---+.++||+-+|++|.|++|..+
T Consensus 2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~l 68 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNL 68 (73)
T ss_pred ceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccE
Confidence 4555554 36789999999999999999999999999999999866679999999999999999877
No 51
>KOG1769|consensus
Probab=97.84 E-value=0.00013 Score=61.18 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=62.9
Q ss_pred CceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+..|+++|+..++ ...+.|..++..+.|++..+++-|++.+.+|++|.|+.+++.+|-.+++.++|+.|
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~I 87 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEI 87 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEE
Confidence 3668888887544 56788999999999999999999999999999999999999999999999999999
No 52
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.69 E-value=0.0001 Score=59.43 Aligned_cols=67 Identities=15% Similarity=0.290 Sum_probs=51.7
Q ss_pred eEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCc---C---CeEEE-eCCeecCCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALP---E---QLCLI-FAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~---~---~qrLI-f~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.++|+|...+ ..+++.++.+.+|++|...|.+.++.+. . ..+|. -+|+.|+++++|+++||.||+++
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L 76 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVL 76 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EE
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEE
Confidence 4789999876 7899999999999999999999887633 2 35777 78999999999999999999998
No 53
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.59 E-value=0.00013 Score=61.58 Aligned_cols=56 Identities=21% Similarity=0.496 Sum_probs=42.7
Q ss_pred EEEEcCC--CeEEEEeC--CCCcHHHHHHHHHHhh--CCCcCCeEEEeCCeecCCCCCcccC
Q psy11489 15 IVVKTPK--EKQNIEIE--EDASVTDFKEAVAKKF--NALPEQLCLIFAGKIMKDHENLSNH 70 (433)
Q Consensus 15 V~VKt~~--~~~~i~V~--~~~TV~~LK~~I~~~~--~ip~~~qrLIf~GkiLkD~~tLs~~ 70 (433)
|+|+... -.+.++|. .+.||..||..|.++. .+...++||||+||+|.|+..|+..
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 3444433 24666666 7899999999999988 4555789999999999999877554
No 54
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.44 E-value=0.0005 Score=54.67 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=56.1
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCC-----eecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAG-----KIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~G-----kiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||-.+ ..+.+.|.+..+|.++|++|....+++- .|||-|.- ..|.+.++|.+|||=.+..|
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i 71 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNI 71 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEE
Confidence 579999766 4799999999999999999999998886 89999853 37889999999999877666
No 55
>KOG4583|consensus
Probab=97.35 E-value=2.5e-05 Score=77.97 Aligned_cols=69 Identities=23% Similarity=0.408 Sum_probs=55.0
Q ss_pred CceEEEEEEcCCCe---EEEEeCCCCcHHHHHHHHHHhhC--CCcCCeEEEeCCeecCCCCCcccCCCC--CCCeE
Q psy11489 10 KKLITIVVKTPKEK---QNIEIEEDASVTDFKEAVAKKFN--ALPEQLCLIFAGKIMKDHENLSNHNMK--DGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~~---~~i~V~~~~TV~~LK~~I~~~~~--ip~~~qrLIf~GkiLkD~~tLs~~gI~--dg~tV 78 (433)
+..+++.||.++.+ ++|+.+..+||++||..++..+- --..+|||||.||.|.|+..|++.-+| .-|++
T Consensus 7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~ 82 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVK 82 (391)
T ss_pred CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHH
Confidence 45588999998753 67778889999999999998872 223589999999999999999887543 45667
No 56
>KOG4495|consensus
Probab=97.15 E-value=0.00062 Score=56.60 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=51.7
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEe-CC-eecCCCCCcccCCCC
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIF-AG-KIMKDHENLSNHNMK 73 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf-~G-kiLkD~~tLs~~gI~ 73 (433)
+-|.||-.+..+-++.+++.||.+||.+++....-|++.|||.. .- .+|.|.+||+++|..
T Consensus 3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 45667766667888999999999999999999999999999975 33 688899999999764
No 57
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.97 E-value=0.0075 Score=48.53 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=59.0
Q ss_pred CCceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCC-eEEE--eCCeecCCCC--CcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQ-LCLI--FAGKIMKDHE--NLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~-qrLI--f~GkiLkD~~--tLs~~gI~dg~tV 78 (433)
....++|.||.+++ ++.-.+..++||.+|...|......+... .+|+ |-.|.|.+++ ||+++|+..+.+|
T Consensus 3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l 78 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATL 78 (82)
T ss_dssp TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEE
T ss_pred CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEE
Confidence 35678999999875 68888999999999999999887776665 7876 7778887665 9999999999998
No 58
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.78 E-value=0.0059 Score=48.63 Aligned_cols=67 Identities=10% Similarity=0.197 Sum_probs=55.6
Q ss_pred eEEEEEEcC---CCeEEEEeCCCCcHHHHHHHHHHhhCC-----CcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTP---KEKQNIEIEEDASVTDFKEAVAKKFNA-----LPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~---~~~~~i~V~~~~TV~~LK~~I~~~~~i-----p~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.|+|+|... +++|++.++.-.+|+.|-..+.+...+ .-..+|+.-++++|.+++.|.+|+|.+|+.+
T Consensus 4 ~ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~L 78 (81)
T COG5417 4 HIKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDIL 78 (81)
T ss_pred eEEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEE
Confidence 467777653 468999999999999999888765543 2247899999999999999999999999987
No 59
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=96.47 E-value=0.0028 Score=44.56 Aligned_cols=32 Identities=34% Similarity=0.606 Sum_probs=27.6
Q ss_pred HHhccCcHHHHHHHHHHhcCcHHHHhhhhCCC
Q psy11489 391 MQNMMQAPYMQSMLQAMSADPSIAQRVIGTNP 422 (433)
Q Consensus 391 ~~~m~~~P~~~~mmq~l~sNP~~~~q~~~~nP 422 (433)
+.+++++|+++++++.+.+||+++++++..||
T Consensus 4 ~~~~l~~P~~~~~l~~~~~nP~~~~~~~~~nP 35 (41)
T smart00727 4 MALRLQNPQVQSLLQDMQQNPDMLAQMLQENP 35 (41)
T ss_pred HHHHHcCHHHHHHHHHHHHCHHHHHHHHHhCH
Confidence 44667799999999999999999999996555
No 60
>KOG3206|consensus
Probab=96.47 E-value=0.0078 Score=56.86 Aligned_cols=66 Identities=15% Similarity=0.352 Sum_probs=54.9
Q ss_pred EEEEEEcCCCe--EEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE-eCC-----eecCCCC-CcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKEK--QNIEIEEDASVTDFKEAVAKKFNALPEQLCLI-FAG-----KIMKDHE-NLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~~--~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI-f~G-----kiLkD~~-tLs~~gI~dg~tV 78 (433)
++|.|.+...+ .+...+.+.||.+||.++...+|.+++.++|. |+| -.|.|++ .|..|+..||..|
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~ri 76 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRI 76 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEE
Confidence 67888776544 56677889999999999999999999999875 666 2566554 8999999999999
No 61
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.018 Score=47.48 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=59.2
Q ss_pred ceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 11 KLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 11 ~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+.|.++|...+ ..+-+.|..+.|.+.|-+..+++.|-..+.+|++|.|+.++-++|-.+++.++++.|
T Consensus 23 ~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~i 91 (103)
T COG5227 23 KHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEI 91 (103)
T ss_pred cccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHH
Confidence 34566665444 367788889999999999999999999999999999999999999999999999988
No 62
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=96.13 E-value=0.0043 Score=42.65 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=34.0
Q ss_pred hHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhc
Q psy11489 348 YRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMA 386 (433)
Q Consensus 348 y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~ 386 (433)
|.+.+++|.+|||. .+.++.|+...+++++.+++.|++
T Consensus 1 ~~~~v~~L~~mGf~-~~~~~~AL~~~~~d~~~A~~~L~~ 38 (38)
T cd00194 1 DEEKLEQLLEMGFS-REEARKALRATNNNVERAVEWLLE 38 (38)
T ss_pred CHHHHHHHHHcCCC-HHHHHHHHHHhCCCHHHHHHHHhC
Confidence 45789999999998 889999999999999999998863
No 63
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=96.10 E-value=0.014 Score=45.62 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=44.8
Q ss_pred EEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 17 VKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 17 VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|.....++.|.|.++.++.++-++..+++++++++-.|.|++|.|+-+.+++-.|+-+|+++
T Consensus 2 i~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akL 63 (65)
T PF11470_consen 2 ICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKL 63 (65)
T ss_dssp E-TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EE
T ss_pred CccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEE
Confidence 44455689999999999999999999999999999999999999988889999999999887
No 64
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=95.97 E-value=0.039 Score=44.42 Aligned_cols=68 Identities=10% Similarity=0.143 Sum_probs=55.7
Q ss_pred ceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE--eCCeecCCC---CCcccCCCCCCCeE
Q psy11489 11 KLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLI--FAGKIMKDH---ENLSNHNMKDGLTS 78 (433)
Q Consensus 11 ~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI--f~GkiLkD~---~tLs~~gI~dg~tV 78 (433)
...+|.||.+++ ++...+..++||.+|.+.|....+......+|+ |-.|.|.|+ .||.++|+....+|
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l 76 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTL 76 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEE
Confidence 457899999875 688889999999999999976666666677776 777888755 49999999888877
No 65
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.84 E-value=0.052 Score=43.95 Aligned_cols=67 Identities=13% Similarity=0.254 Sum_probs=52.9
Q ss_pred eEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCC-CcCCeEEE--eCCeecCCCC-CcccCCCCCCCeE
Q psy11489 12 LITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNA-LPEQLCLI--FAGKIMKDHE-NLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~i-p~~~qrLI--f~GkiLkD~~-tLs~~gI~dg~tV 78 (433)
..+|.||.+++ ++...+..++||++|++.|...... ......|+ |-.|.|.|++ ||++.|+.+...|
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 47899999865 7888899999999999999876532 23567776 7789888765 9999999965443
No 66
>KOG0012|consensus
Probab=95.73 E-value=0.058 Score=55.01 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=53.1
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCC--CCcccCCCCCCCeE
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDH--ENLSNHNMKDGLTS 78 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~--~tLs~~gI~dg~tV 78 (433)
.++.+.|..+-....|+..+...++++.+..-|||++++|.+. ..|.+||+++|++|
T Consensus 13 ~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl 71 (380)
T KOG0012|consen 13 KKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSL 71 (380)
T ss_pred eeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeE
Confidence 3688999999999999999999999999999999999999977 48999999999999
No 67
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=95.66 E-value=0.0073 Score=41.59 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=31.1
Q ss_pred hHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhh
Q psy11489 348 YRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQM 384 (433)
Q Consensus 348 y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l 384 (433)
+..++++|.+|||... .+..|+..++++++.|+++|
T Consensus 2 ~~~~v~~L~~mGf~~~-~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 2 DEEKVQQLMEMGFSRE-QAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHHHTS-HH-HHHHHHHHTTTSHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHH-HHHHHHHHcCCCHHHHHHhC
Confidence 4678999999999876 78999999999999999875
No 68
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.54 E-value=0.012 Score=61.17 Aligned_cols=74 Identities=12% Similarity=0.316 Sum_probs=57.8
Q ss_pred chhhhHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcC-hH---------------------------H-----
Q psy11489 344 PEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMAN-PQ---------------------------L----- 390 (433)
Q Consensus 344 pe~~y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~-P~---------------------------~----- 390 (433)
....|..-+++|-+||| +++.-.+|+.+...+-+.|+++|+.. |. +
T Consensus 152 ~g~~~e~~I~~i~eMGf-~R~qV~~ALRAafNNPdRAVEYL~tGIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~a~ 230 (378)
T TIGR00601 152 VGSERETTIEEIMEMGY-EREEVERALRAAFNNPDRAVEYLLTGIPEDPEQPEPVQQTAASTAAATTETPQHGSVFEQAA 230 (378)
T ss_pred cchHHHHHHHHHHHhCC-CHHHHHHHHHHHhCCHHHHHHHHHhCCCccccccccCCCcccccccccCCCCCCcchhhhhh
Confidence 44567888999999998 88888889988888888999988764 20 0
Q ss_pred -----------------HHhccCcHHHHHHHHHHhcCcHHHHhhh
Q psy11489 391 -----------------MQNMMQAPYMQSMLQAMSADPSIAQRVI 418 (433)
Q Consensus 391 -----------------~~~m~~~P~~~~mmq~l~sNP~~~~q~~ 418 (433)
+.-+-++|.+++|-+.+.+||+++..++
T Consensus 231 ~~~~~~~~~~~~~g~~~l~~Lr~~pqf~~lR~~vq~NP~~L~~lL 275 (378)
T TIGR00601 231 QGGTEQPATEAAQGGNPLEFLRNQPQFQQLRQVVQQNPQLLPPLL 275 (378)
T ss_pred cccccccccccccCCchHHHhhcCHHHHHHHHHHHHCHHHHHHHH
Confidence 1233467899999999999999777665
No 69
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.51 E-value=0.073 Score=42.42 Aligned_cols=65 Identities=14% Similarity=0.298 Sum_probs=50.9
Q ss_pred eEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE--eCCeecCC---CCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLI--FAGKIMKD---HENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI--f~GkiLkD---~~tLs~~gI~dg~tV 78 (433)
..+|.||.+++ ++...+..++||.+|.+.|...... ....+|+ |-.|.+.| +.||.++|+.. ++|
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~ 72 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVV 72 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceE
Confidence 46899999875 6788889999999999999866433 4567776 77788876 45999999994 444
No 70
>KOG1639|consensus
Probab=95.15 E-value=0.025 Score=54.98 Aligned_cols=66 Identities=18% Similarity=0.271 Sum_probs=49.6
Q ss_pred EEEEEEcCCC--eEE-EEeCCCCcHHHHHHHHHHhh-CCCc----CCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKE--KQN-IEIEEDASVTDFKEAVAKKF-NALP----EQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~--~~~-i~V~~~~TV~~LK~~I~~~~-~ip~----~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|++++.++ ..+ .+.+...||.|+++.|..+. .+.+ ...|+--+||.|.|+++|++|+...|.+|
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i 74 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATI 74 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEE
Confidence 4577776543 444 45666889999998886553 4544 34455678999999999999999999888
No 71
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.97 E-value=0.2 Score=40.40 Aligned_cols=67 Identities=9% Similarity=0.109 Sum_probs=53.7
Q ss_pred ceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE--eCCeecCCC---CCcccCCCCCCCeE
Q psy11489 11 KLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLI--FAGKIMKDH---ENLSNHNMKDGLTS 78 (433)
Q Consensus 11 ~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI--f~GkiLkD~---~tLs~~gI~dg~tV 78 (433)
...+|.||.+++ .+...+..++||.+|++.|....+.. ...+|+ |--|.+.++ .||.++|+....+|
T Consensus 3 ~~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L 75 (79)
T cd01772 3 TETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVL 75 (79)
T ss_pred cEEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEE
Confidence 347899999865 67778889999999999998665432 557776 888999754 59999999988887
No 72
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=94.83 E-value=0.023 Score=39.83 Aligned_cols=19 Identities=37% Similarity=0.894 Sum_probs=13.0
Q ss_pred cCChHHHhhhc----CHHHHHHH
Q psy11489 177 MQNPEIQGMMA----NPEALSAI 195 (433)
Q Consensus 177 m~nP~~q~ll~----NP~~l~~~ 195 (433)
++||.++++++ ||++++.+
T Consensus 8 l~~P~~~~~l~~~~~nP~~~~~~ 30 (41)
T smart00727 8 LQNPQVQSLLQDMQQNPDMLAQM 30 (41)
T ss_pred HcCHHHHHHHHHHHHCHHHHHHH
Confidence 56777766555 77777777
No 73
>KOG0013|consensus
Probab=94.59 E-value=0.024 Score=53.71 Aligned_cols=63 Identities=17% Similarity=0.292 Sum_probs=54.8
Q ss_pred EEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCe
Q psy11489 15 IVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLT 77 (433)
Q Consensus 15 V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~t 77 (433)
+.+.+.++.+.+.+....||.++|.++....++++-.||+.|+|++|-|...|..|+|..|..
T Consensus 150 ~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~r 212 (231)
T KOG0013|consen 150 LRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQR 212 (231)
T ss_pred HHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCE
Confidence 333334456888888899999999999999999999999999999999999999999999943
No 74
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=94.57 E-value=0.026 Score=38.53 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=31.8
Q ss_pred hHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhh
Q psy11489 348 YRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMM 385 (433)
Q Consensus 348 y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~ 385 (433)
|.+.+++|.+|||... ..++|+...+++++.++++|+
T Consensus 1 ~~~~v~~L~~mGf~~~-~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 1 DEEKIDQLLEMGFSRE-EALKALRAANGNVERAAEYLL 37 (37)
T ss_pred CHHHHHHHHHcCCCHH-HHHHHHHHhCCCHHHHHHHHC
Confidence 3577999999999876 779999999999999998874
No 75
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=94.35 E-value=0.2 Score=46.02 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=46.1
Q ss_pred EEEEEEcCCC-----eEEEEeCCCCcHHHHHHHHHHhhCCCcCC-eEEEe-CCeec--CCCCCcccCCCCCC
Q psy11489 13 ITIVVKTPKE-----KQNIEIEEDASVTDFKEAVAKKFNALPEQ-LCLIF-AGKIM--KDHENLSNHNMKDG 75 (433)
Q Consensus 13 i~V~VKt~~~-----~~~i~V~~~~TV~~LK~~I~~~~~ip~~~-qrLIf-~GkiL--kD~~tLs~~gI~dg 75 (433)
|+|.|++... .+.+.++.+.||.+|+..|.++++++... ..|.+ .++.| .++..++++.-.+.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~ 72 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQ 72 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcC
Confidence 6799998643 58889999999999999999999999887 34444 24444 34456776654443
No 76
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.27 E-value=0.38 Score=39.52 Aligned_cols=68 Identities=12% Similarity=0.150 Sum_probs=54.4
Q ss_pred CceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCC--eecCC--------CCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAG--KIMKD--------HENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~G--kiLkD--------~~tLs~~gI~dg~tV 78 (433)
+..++|.||.+++ ++.-.+..++||++|...|... +..++..+|++.= |++.+ +.||.+.|+....+|
T Consensus 2 ~~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L 80 (85)
T cd01774 2 PDTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL 80 (85)
T ss_pred CceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence 3568999999875 6777888999999999999653 4566889998655 88862 459999999988777
No 77
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=93.90 E-value=0.09 Score=42.29 Aligned_cols=51 Identities=22% Similarity=0.344 Sum_probs=44.1
Q ss_pred eCCCCcHHHHHHHHHHhhC-CCcCCeEEEeCCeecCCCCCcccC-CCCCCCeE
Q psy11489 28 IEEDASVTDFKEAVAKKFN-ALPEQLCLIFAGKIMKDHENLSNH-NMKDGLTS 78 (433)
Q Consensus 28 V~~~~TV~~LK~~I~~~~~-ip~~~qrLIf~GkiLkD~~tLs~~-gI~dg~tV 78 (433)
|.++++|.++|+.+..... +......|.++|+.|+|...|+++ |+++|+++
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L 53 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVL 53 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEE
Confidence 5678899999999987754 566788999999999888899887 59999999
No 78
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=93.89 E-value=0.28 Score=39.92 Aligned_cols=46 Identities=13% Similarity=0.283 Sum_probs=39.2
Q ss_pred eEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCee
Q psy11489 12 LITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKI 60 (433)
Q Consensus 12 ~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~Gki 60 (433)
.++|+.+. .+.|.|.++.+..+|+++|+++++++.+.++|-|+-..
T Consensus 4 vvKV~f~~---tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 4 VVKVHFKY---TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEEEE---EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 34555543 89999999999999999999999999999999998653
No 79
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=93.19 E-value=0.7 Score=36.31 Aligned_cols=57 Identities=25% Similarity=0.247 Sum_probs=43.3
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+|.......+++++...||.+|.+.+ +++.+...+..+|+++.+ ++-+++|+.|
T Consensus 5 m~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~V 61 (70)
T PRK08364 5 IRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYV 61 (70)
T ss_pred EEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEE
Confidence 55555444345678888899999998765 677777888899999853 6668999999
No 80
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=92.64 E-value=0.59 Score=37.55 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=42.1
Q ss_pred EEEEEEcCC--------CeEEEEeCCCCcHHHHHHHHHHhh-CCCc--CCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK--------EKQNIEIEEDASVTDFKEAVAKKF-NALP--EQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~--------~~~~i~V~~~~TV~~LK~~I~~~~-~ip~--~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||.-. ...+++++...||.+|++.+..++ ++.. ....+..+|+... .++-|++|++|
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeV 73 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDEL 73 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEE
Confidence 678888632 246778888999999999998765 1111 2234567777764 34568999999
No 81
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=92.54 E-value=0.91 Score=36.83 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=54.8
Q ss_pred ceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE--eCCeecC--CC-CCcccCCCCCCCeE
Q psy11489 11 KLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLI--FAGKIMK--DH-ENLSNHNMKDGLTS 78 (433)
Q Consensus 11 ~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI--f~GkiLk--D~-~tLs~~gI~dg~tV 78 (433)
..++|.||.+++ .+.-.+..++++.+|...|..+ +.+.+..+|+ |=-|++. |. .||.+.|+....+|
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L 75 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETL 75 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEE
Confidence 458999999865 6777889999999999999765 6777788887 7778885 32 49999999988877
No 82
>PRK06437 hypothetical protein; Provisional
Probab=92.47 E-value=0.75 Score=35.92 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=39.0
Q ss_pred eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 23 KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 23 ~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..+++++...||.+|=+. ++++++.+.++.+|+++. .++-+++|++|
T Consensus 12 ~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~V 58 (67)
T PRK06437 12 NKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDV 58 (67)
T ss_pred ceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEE
Confidence 466777888899888754 588889999999999997 56678899999
No 83
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=92.46 E-value=0.41 Score=38.13 Aligned_cols=46 Identities=20% Similarity=0.396 Sum_probs=39.9
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCC
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAG 58 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~G 58 (433)
++|+|+..++.+.+.|+.+.|..+|+.+|.+++++..+..+|-|..
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 2 VDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred ccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 5677777667889999999999999999999999887788888873
No 84
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=92.10 E-value=0.47 Score=38.73 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=37.4
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCc-CCeEEEeCC
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALP-EQLCLIFAG 58 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~-~~qrLIf~G 58 (433)
|+|++...++.+.+.+.+++++.+|+++|++++++.. ..+.|-|.-
T Consensus 1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~D 47 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLD 47 (82)
T ss_pred CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEEC
Confidence 4666667778999999999999999999999999865 556665543
No 85
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=91.74 E-value=1.3 Score=36.22 Aligned_cols=68 Identities=15% Similarity=0.206 Sum_probs=56.2
Q ss_pred CceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE--eCCeecCCC---CCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLI--FAGKIMKDH---ENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI--f~GkiLkD~---~tLs~~gI~dg~tV 78 (433)
...-+|.||.+++ .++-.+..+.++.+|...|.. .+.+.+..+|+ |=-|++..+ .||.+.|+....+|
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~L 76 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETV 76 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEE
Confidence 3456899999865 677888889999999999988 57788999998 777888533 59999999999888
No 86
>KOG0011|consensus
Probab=91.60 E-value=0.14 Score=51.75 Aligned_cols=82 Identities=17% Similarity=0.350 Sum_probs=60.5
Q ss_pred hhHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcC-hH------------------------------------
Q psy11489 347 RYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMAN-PQ------------------------------------ 389 (433)
Q Consensus 347 ~y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~-P~------------------------------------ 389 (433)
-|-.=..++-+|| ++++.+++|+.+..-+-+.++++|+.. |+
T Consensus 134 ~~e~~V~~Im~MG-y~re~V~~AlRAafNNPeRAVEYLl~GIP~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~~~~~ 212 (340)
T KOG0011|consen 134 EYEQTVQQIMEMG-YDREEVERALRAAFNNPERAVEYLLNGIPEDAEVPEPEKSTAAAAELPANAQPLDLFPQGAVEASG 212 (340)
T ss_pred hhHHHHHHHHHhC-ccHHHHHHHHHHhhCChhhhHHHHhcCCcccccCCcccCCcccCCCCCCCCChhhcCCccchhhhc
Confidence 4556678888999 789999999988877778888888653 11
Q ss_pred --HHHhccCcHHHHHHHHHHhcCcHHHHhhhhCCCCCCCCcccc
Q psy11489 390 --LMQNMMQAPYMQSMLQAMSADPSIAQRVIGTNPLLQNSPELQ 431 (433)
Q Consensus 390 --~~~~m~~~P~~~~mmq~l~sNP~~~~q~~~~nPl~~~nPql~ 431 (433)
-+.-+.+.|.+++|.+.+.+||++++.|+.. +=..||||.
T Consensus 213 ~~~l~fLr~~~qf~~lR~~iqqNP~ll~~~Lqq--lg~~nP~L~ 254 (340)
T KOG0011|consen 213 GDPLEFLRNQPQFQQLRQMIQQNPELLHPLLQQ--LGKQNPQLL 254 (340)
T ss_pred CCchhhhhccHHHHHHHHHHhhCHHHHHHHHHH--HhhhCHHHH
Confidence 0223457899999999999999998887631 224466654
No 87
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=91.25 E-value=0.78 Score=36.22 Aligned_cols=51 Identities=20% Similarity=0.432 Sum_probs=40.2
Q ss_pred eEEEEeCCCCcHHHHHHHHHHhhCC----CcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 23 KQNIEIEEDASVTDFKEAVAKKFNA----LPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 23 ~~~i~V~~~~TV~~LK~~I~~~~~i----p~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..+++++...||.+|.+.+.+++.- .....++..+|+..+ .++-|++|+.|
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v 71 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEV 71 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEE
Confidence 4677777789999999999988643 335667778998887 35679999999
No 88
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=91.15 E-value=0.86 Score=36.33 Aligned_cols=47 Identities=21% Similarity=0.406 Sum_probs=40.4
Q ss_pred eEEEEEEcCCCeEE-EEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCC
Q psy11489 12 LITIVVKTPKEKQN-IEIEEDASVTDFKEAVAKKFNALPEQLCLIFAG 58 (433)
Q Consensus 12 ~i~V~VKt~~~~~~-i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~G 58 (433)
+++|+++..++... +.+..+.|..+|+.+|+++++.+....+|-|..
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 36777777777666 899999999999999999999998889998864
No 89
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=91.12 E-value=1.1 Score=37.01 Aligned_cols=47 Identities=21% Similarity=0.370 Sum_probs=39.4
Q ss_pred eEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCe
Q psy11489 12 LITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGK 59 (433)
Q Consensus 12 ~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~Gk 59 (433)
.|+|+|...++.+.|.|+++.+..+|.++|.+++++. +.++|=|+.-
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 4677777778899999999999999999999999995 5677766653
No 90
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=90.22 E-value=0.085 Score=52.96 Aligned_cols=66 Identities=23% Similarity=0.331 Sum_probs=0.0
Q ss_pred CCCceEEEEEEcCCC-eEEEEe--C-C--CCcHHHHHHHHHH----------hhCCCcCCeE-----EEeCCeecCCCCC
Q psy11489 8 SEKKLITIVVKTPKE-KQNIEI--E-E--DASVTDFKEAVAK----------KFNALPEQLC-----LIFAGKIMKDHEN 66 (433)
Q Consensus 8 ~~~~~i~V~VKt~~~-~~~i~V--~-~--~~TV~~LK~~I~~----------~~~ip~~~qr-----LIf~GkiLkD~~t 66 (433)
+..+.|.|++|...+ .++|.+ . + +.+|.++|..++. +.++|.+.++ |.|+-|.+-|.+|
T Consensus 74 gs~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~kt 153 (309)
T PF12754_consen 74 GSSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKT 153 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCc
Confidence 346779999998644 444432 2 3 6789999999999 8899999999 9999999999999
Q ss_pred cccCCCC
Q psy11489 67 LSNHNMK 73 (433)
Q Consensus 67 Ls~~gI~ 73 (433)
|.+..-.
T Consensus 154 l~e~l~~ 160 (309)
T PF12754_consen 154 LAEVLAD 160 (309)
T ss_dssp -------
T ss_pred HHHHHhc
Confidence 8887544
No 91
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=89.86 E-value=1 Score=35.65 Aligned_cols=46 Identities=20% Similarity=0.282 Sum_probs=38.0
Q ss_pred EEEEEEcCCCeEEEEeC-CCCcHHHHHHHHHHhhCCCcCCeEEEeCC
Q psy11489 13 ITIVVKTPKEKQNIEIE-EDASVTDFKEAVAKKFNALPEQLCLIFAG 58 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~-~~~TV~~LK~~I~~~~~ip~~~qrLIf~G 58 (433)
++|+|+..++.+.+.+. .+.|..+|+.+|.++++.+....+|-|..
T Consensus 1 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 1 VRVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred CcEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 35777777788888888 89999999999999999887667776664
No 92
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=89.69 E-value=0.99 Score=36.87 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=36.9
Q ss_pred EEEEEEcCCCeEEEEeCC--CCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCC
Q psy11489 13 ITIVVKTPKEKQNIEIEE--DASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDH 64 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~--~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~ 64 (433)
|+|+++..+++..+.+++ +.+..+|++.|+++++++ .+.| |-|+|+
T Consensus 1 V~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~l----KYlDde 48 (81)
T cd06396 1 VNLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQI----KYVDEE 48 (81)
T ss_pred CEEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--ccee----EEEcCC
Confidence 467777888888888888 779999999999999999 3333 556654
No 93
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=89.63 E-value=0.87 Score=49.44 Aligned_cols=70 Identities=23% Similarity=0.411 Sum_probs=46.7
Q ss_pred CCceEEEEEEcCC---CeEEEEeCCCCcHHHHHHHHHHhh--CC------CcCCeEEEeC----Ce-ecCCCC-------
Q psy11489 9 EKKLITIVVKTPK---EKQNIEIEEDASVTDFKEAVAKKF--NA------LPEQLCLIFA----GK-IMKDHE------- 65 (433)
Q Consensus 9 ~~~~i~V~VKt~~---~~~~i~V~~~~TV~~LK~~I~~~~--~i------p~~~qrLIf~----Gk-iLkD~~------- 65 (433)
+-+.++|.|-..+ ..+.|.|-.-+||.++|++|-... +. .++++-|-+. |+ +|+|++
T Consensus 186 d~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~ 265 (539)
T PF08337_consen 186 DYKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEG 265 (539)
T ss_dssp -S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEET
T ss_pred ceEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCC
Confidence 3456778866543 368899989999999999996542 22 3355655432 33 787763
Q ss_pred ------CcccCCCCCCCeE
Q psy11489 66 ------NLSNHNMKDGLTS 78 (433)
Q Consensus 66 ------tLs~~gI~dg~tV 78 (433)
||..|+|.||++|
T Consensus 266 ~wkrLNTL~HY~V~dga~v 284 (539)
T PF08337_consen 266 GWKRLNTLAHYKVPDGATV 284 (539)
T ss_dssp TEEE--BHHHHT--TTEEE
T ss_pred CceEeccHhhcCCCCCceE
Confidence 5888999999999
No 94
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=89.08 E-value=1.8 Score=46.11 Aligned_cols=67 Identities=13% Similarity=0.260 Sum_probs=54.9
Q ss_pred eEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCC------cCCeEEE-eCCeecCCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNAL------PEQLCLI-FAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip------~~~qrLI-f~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..+|+|..++...++.++.+..|.||-..|-+..+-. ...-+|. -.|..|+-+.||.+.||.||+++
T Consensus 2 l~RVtV~~~~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L 75 (452)
T TIGR02958 2 LCRVTVLAGRRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELL 75 (452)
T ss_pred eEEEEEeeCCeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeE
Confidence 3678998888889999999999999999998777541 2234454 56779999999999999999999
No 95
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=87.32 E-value=1.9 Score=35.78 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=39.0
Q ss_pred eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCC----e-ecCCCC-CcccCCCCCCCeE
Q psy11489 23 KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAG----K-IMKDHE-NLSNHNMKDGLTS 78 (433)
Q Consensus 23 ~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~G----k-iLkD~~-tLs~~gI~dg~tV 78 (433)
.++..+...+||..+++.+.+.+.| .++.||--++ . .|.+.+ ||.+.+|.+|-+|
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~v 75 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVV 75 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEE
T ss_pred HhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEE
Confidence 5777889999999999999999999 6667875322 1 566664 9999999999988
No 96
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=86.29 E-value=1.8 Score=32.96 Aligned_cols=43 Identities=21% Similarity=0.375 Sum_probs=33.0
Q ss_pred EEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 25 NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 25 ~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.+++..+.|+.+||.++.... + .+||+|=..+++ +-+++||.|
T Consensus 9 ~~~~~~~~tl~~lr~~~k~~~----D--I~I~NGF~~~~d-----~~L~e~D~v 51 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKPDA----D--IVILNGFPTKED-----IELKEGDEV 51 (57)
T ss_pred EEEcCCCcCHHHHHHhhCCCC----C--EEEEcCcccCCc-----cccCCCCEE
Confidence 456778889999998765533 2 779999888874 566788988
No 97
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=85.74 E-value=2.4 Score=35.28 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=35.2
Q ss_pred EEEEEcCCCeEEEEeC-----CCCcHHHHHHHHHHhhCCCc-CCeEEEeCC
Q psy11489 14 TIVVKTPKEKQNIEIE-----EDASVTDFKEAVAKKFNALP-EQLCLIFAG 58 (433)
Q Consensus 14 ~V~VKt~~~~~~i~V~-----~~~TV~~LK~~I~~~~~ip~-~~qrLIf~G 58 (433)
.|+|+..++...|.++ ++.+..+|+++|++.++++. ....|-|+-
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 4677777776666665 47999999999999999987 567777764
No 98
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=85.37 E-value=3.9 Score=33.09 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=37.7
Q ss_pred eEEEEeCCCCcHHHHHHHHHHhhCC-----C------cCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 23 KQNIEIEEDASVTDFKEAVAKKFNA-----L------PEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 23 ~~~i~V~~~~TV~~LK~~I~~~~~i-----p------~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..+|+++ ..||.+|.+.+.+++.- - ....++..+|+..++++. .-|++|+.|
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev 79 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVV 79 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEE
Confidence 4667776 88999999999888631 0 123667788887765432 678999999
No 99
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=85.27 E-value=4.6 Score=32.17 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=37.9
Q ss_pred eEEEEeCCC-CcHHHHHHHHHHhhC-C--CcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 23 KQNIEIEED-ASVTDFKEAVAKKFN-A--LPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 23 ~~~i~V~~~-~TV~~LK~~I~~~~~-i--p~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..+++++.+ .||.+|++.+.+++. + ....+++..+|+...+ +.-|++|+.|
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDev 71 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEV 71 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEE
Confidence 357788876 899999999998874 1 1133556677877764 5689999999
No 100
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=84.73 E-value=2.8 Score=32.12 Aligned_cols=52 Identities=12% Similarity=0.146 Sum_probs=37.9
Q ss_pred cCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 19 TPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 19 t~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..++.+++ + ..||.+|.+.+ +++.+...+-.+|+++. .....+.-+++||.|
T Consensus 5 ~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~I 56 (65)
T PRK06488 5 VNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRI 56 (65)
T ss_pred ECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEE
Confidence 33455555 3 45899888764 66666777889999887 345667889999999
No 101
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=84.57 E-value=3 Score=34.49 Aligned_cols=43 Identities=12% Similarity=0.278 Sum_probs=34.8
Q ss_pred EEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcC---CeEEEe
Q psy11489 14 TIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPE---QLCLIF 56 (433)
Q Consensus 14 ~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~---~qrLIf 56 (433)
.+++|.+++ .+.+.+.+++.+.+|++.|++++++..+ ...|-|
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 356777654 7899999999999999999999999874 555554
No 102
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=84.07 E-value=3.1 Score=32.36 Aligned_cols=54 Identities=28% Similarity=0.514 Sum_probs=44.3
Q ss_pred eEEEEeCCCCcHHHHHHHHHHhhCC--CcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 23 KQNIEIEEDASVTDFKEAVAKKFNA--LPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 23 ~~~i~V~~~~TV~~LK~~I~~~~~i--p~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
...+.+....||.+|.+.+..++.- ..+..++..+|+...+ ...+.-+++|++|
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V 68 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEV 68 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEE
Confidence 5667888999999999999887721 3367889999999988 3667788999999
No 103
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=82.88 E-value=4 Score=31.27 Aligned_cols=49 Identities=20% Similarity=0.379 Sum_probs=37.8
Q ss_pred EEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 25 NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 25 ~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.++++...||.+|.+.+ +++.+.+.+.++|+++.. +..+++-|++||+|
T Consensus 8 ~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~-~~~~~~~L~~gD~V 56 (65)
T cd00565 8 PREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPR-SEWASTPLQDGDRI 56 (65)
T ss_pred EEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCH-HHcCceecCCCCEE
Confidence 34556788999998765 577788999999998864 34455679999999
No 104
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=81.13 E-value=0.54 Score=36.05 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=12.1
Q ss_pred cCHHHHHHHHHHHHHHHHHHhhCCccc-ccccCc
Q psy11489 187 ANPEALSAIQQIQAGIEQLRTAAPGME-WNFRNP 219 (433)
Q Consensus 187 ~NP~~l~~~~q~~~~~~~~i~~nP~l~-~~~~nP 219 (433)
.||+++..+ +++|-.+||++. .|.+||
T Consensus 19 ~NP~lL~~l------Lqql~~~nP~l~q~I~~n~ 46 (59)
T PF09280_consen 19 QNPQLLPPL------LQQLGQSNPQLLQLIQQNP 46 (59)
T ss_dssp C-GGGHHHH------HHHHHCCSHHHHHHHHHTH
T ss_pred HCHHHHHHH------HHHHhccCHHHHHHHHHCH
Confidence 455555555 334455555444 433333
No 105
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=80.95 E-value=9 Score=30.05 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=43.1
Q ss_pred EEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCc-CCeEEEe----CC--eecCCCCCcccCCCC
Q psy11489 17 VKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALP-EQLCLIF----AG--KIMKDHENLSNHNMK 73 (433)
Q Consensus 17 VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~-~~qrLIf----~G--kiLkD~~tLs~~gI~ 73 (433)
|+..++ ..+++|+.++|+.+|=+.|..+.++.- +-.=|.| +| ..|+.+++|.++..+
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 455655 688999999999999999999998854 3446767 22 366777788888777
No 106
>KOG2982|consensus
Probab=80.14 E-value=2.6 Score=42.87 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=42.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeC---CeecC----C-CCCcccCCCCCCCeE
Q psy11489 24 QNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFA---GKIMK----D-HENLSNHNMKDGLTS 78 (433)
Q Consensus 24 ~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~---GkiLk----D-~~tLs~~gI~dg~tV 78 (433)
.+..|.-.-||.|||+++..+.|+.+.++||.|- ||.-. | ...|..|+|++|+.+
T Consensus 350 ~s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~ 412 (418)
T KOG2982|consen 350 ASGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSF 412 (418)
T ss_pred cceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEe
Confidence 4455566779999999999999999999999864 33221 1 136888999999988
No 107
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=79.47 E-value=4 Score=37.13 Aligned_cols=52 Identities=15% Similarity=0.326 Sum_probs=40.6
Q ss_pred EEEEEEcCCCeEEEEeCC-CCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccC
Q psy11489 13 ITIVVKTPKEKQNIEIEE-DASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNH 70 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~-~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~ 70 (433)
|.++|+. +.+-|+++. ...+.++++.+.+.+-++.+ |+.|+-+++..|++||
T Consensus 68 veL~V~v--Gri~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 68 VELTVKV--GRIILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEEEE--eEEEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh
Confidence 4455554 456777777 78899999988888866655 5679999999999998
No 108
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=79.18 E-value=14 Score=33.93 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=43.5
Q ss_pred ceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcC-CeEEEeC--C----eecCCCCCcccCCCC
Q psy11489 11 KLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPE-QLCLIFA--G----KIMKDHENLSNHNMK 73 (433)
Q Consensus 11 ~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~-~qrLIf~--G----kiLkD~~tLs~~gI~ 73 (433)
+.+.|.|...++ ..+|.|+.++||.++.+.|+++.++... -.-|.+. + +.|+.+.+|.+...+
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 346788888765 6789999999999999999999999542 2234332 1 245445566555544
No 109
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=77.25 E-value=7.4 Score=31.26 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=21.5
Q ss_pred EEEcCCCeEEEEeCC-CCcHHHHHHHHHHhhCC
Q psy11489 16 VVKTPKEKQNIEIEE-DASVTDFKEAVAKKFNA 47 (433)
Q Consensus 16 ~VKt~~~~~~i~V~~-~~TV~~LK~~I~~~~~i 47 (433)
+.|+..+..+|.++. ..+|.+||.+|.++.++
T Consensus 4 KFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~l 36 (74)
T PF08783_consen 4 KFKSQKDYDTITFDGTSISVFDLKREIIEKKKL 36 (74)
T ss_dssp EETT-SSEEEEEESSSEEEHHHHHHHHHHHHT-
T ss_pred EecccCCccEEEECCCeeEHHHHHHHHHHHhCC
Confidence 444444556677765 67999999999776554
No 110
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=77.16 E-value=8.2 Score=29.49 Aligned_cols=49 Identities=16% Similarity=0.367 Sum_probs=36.7
Q ss_pred EEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 25 NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 25 ~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.++++...||.+|.+.+ +++++...+.++|+++.. +...++-+++||.|
T Consensus 7 ~~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~-~~~~~~~L~~gD~v 55 (64)
T TIGR01683 7 PVEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPR-SEWDDTILKEGDRI 55 (64)
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCceecCCCCEE
Confidence 34556788999998764 566778888899998853 23455679999999
No 111
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=76.60 E-value=7.8 Score=37.06 Aligned_cols=60 Identities=22% Similarity=0.300 Sum_probs=36.0
Q ss_pred ceEEEEEEcCC----CeEEEEeCCCCcHHHHHHHHHHhhCCCcC---CeEE--EeCCee---cCCCCCcccC
Q psy11489 11 KLITIVVKTPK----EKQNIEIEEDASVTDFKEAVAKKFNALPE---QLCL--IFAGKI---MKDHENLSNH 70 (433)
Q Consensus 11 ~~i~V~VKt~~----~~~~i~V~~~~TV~~LK~~I~~~~~ip~~---~qrL--If~Gki---LkD~~tLs~~ 70 (433)
+.|+|++-..+ +.+++-|+.+.||.||.+++.++.+++.+ .+|| ++++|+ +..+.+|++.
T Consensus 19 k~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 19 KQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp --EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred eEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 34666666543 24888999999999999999999988765 6665 477774 6667777776
No 112
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=76.59 E-value=7.2 Score=31.83 Aligned_cols=45 Identities=4% Similarity=0.067 Sum_probs=36.9
Q ss_pred EEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCC
Q psy11489 14 TIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAG 58 (433)
Q Consensus 14 ~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~G 58 (433)
+.+||..+..-.|.++..-|-..|+++|...+++|.+.+-|.|-.
T Consensus 2 ~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiD 46 (82)
T cd06397 2 QFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYID 46 (82)
T ss_pred eEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEc
Confidence 567888887666666777789999999999999999888777754
No 113
>COG4055 McrD Methyl coenzyme M reductase, subunit D [Coenzyme metabolism]
Probab=75.99 E-value=6.1 Score=35.71 Aligned_cols=75 Identities=20% Similarity=0.263 Sum_probs=50.6
Q ss_pred eEEEEEEcCCCeEEEEeCCCC-cHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeEecccCcccccCC
Q psy11489 12 LITIVVKTPKEKQNIEIEEDA-SVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTSLKQLPLTKEIMH 90 (433)
Q Consensus 12 ~i~V~VKt~~~~~~i~V~~~~-TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV~~~~~~~~~~~~ 90 (433)
.|.++||+ +.+-|++++.. ++.++++.+.+.+-+..+ ++-|+-+++.-|+.|| +|-|..|--+.+-|-+-|-
T Consensus 75 ~~eL~Vkv--Gri~~eie~e~~~~e~ie~ic~e~lPf~y~----v~vG~F~r~kpTVTDy-~KyG~~~~k~d~rLiGmvD 147 (165)
T COG4055 75 EIELKVKV--GRIILEIEDEDETMEKIEEICDEMLPFGYE----VRVGKFTRRKPTVTDY-IKYGEDIDKIDPRLIGMVD 147 (165)
T ss_pred EEEEEEEe--eEEEEEecCcHhHHHHHHHHHHHhCCCcee----eeeeeeeccCCcchhh-hhhCccccccCHHHhcccC
Confidence 35555554 45666776654 888888888877766655 6889999999999998 5656545333444445555
Q ss_pred CCC
Q psy11489 91 PKE 93 (433)
Q Consensus 91 ~~~ 93 (433)
|++
T Consensus 148 p~a 150 (165)
T COG4055 148 PRA 150 (165)
T ss_pred chh
Confidence 554
No 114
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=75.13 E-value=6 Score=32.64 Aligned_cols=56 Identities=5% Similarity=0.098 Sum_probs=39.9
Q ss_pred eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 23 KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 23 ~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.+...++-...++.||..++.+.++.-+.-.+......|..+++|-+.+|+-.-+|
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlV 59 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLV 59 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEE
Confidence 34556677889999999999999999998888888888999999999999877777
No 115
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=74.80 E-value=6 Score=35.85 Aligned_cols=52 Identities=15% Similarity=0.306 Sum_probs=40.6
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccC
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNH 70 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~ 70 (433)
|.++|+. +.+-|++.....+.++++.+.+.+-++.+ |..||-+++..|++||
T Consensus 67 veL~V~V--GrI~le~~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 67 VELRVQV--GRIILELEDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEEEEEE--eEEEEEecCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhh
Confidence 4444443 45667777888899999999888876665 6889999999999997
No 116
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=73.89 E-value=8.7 Score=31.20 Aligned_cols=36 Identities=8% Similarity=0.184 Sum_probs=32.5
Q ss_pred eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCC
Q psy11489 23 KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAG 58 (433)
Q Consensus 23 ~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~G 58 (433)
++.|.|.+..+..+|..+|++++..+++..+|-|+-
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 455678899999999999999999999999999975
No 117
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=73.02 E-value=23 Score=30.21 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=47.2
Q ss_pred ceEEEEEEcCC--CeEEEEeCCCCcHHHHHHHHHHhh------CCCcC-CeEEEeCCe--ecCCCCCcccCC-----CCC
Q psy11489 11 KLITIVVKTPK--EKQNIEIEEDASVTDFKEAVAKKF------NALPE-QLCLIFAGK--IMKDHENLSNHN-----MKD 74 (433)
Q Consensus 11 ~~i~V~VKt~~--~~~~i~V~~~~TV~~LK~~I~~~~------~ip~~-~qrLIf~Gk--iLkD~~tLs~~g-----I~d 74 (433)
..+.|.|+..+ ..+++.|+.++|+.+|.+.+-.+. .-+.+ +..|=-.|+ -|-.+..|.+|. ++.
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~ 95 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKN 95 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhc
Confidence 46778888765 479999999999999998886651 11222 566666676 444556777764 467
Q ss_pred CCeE
Q psy11489 75 GLTS 78 (433)
Q Consensus 75 g~tV 78 (433)
|..+
T Consensus 96 ~~~~ 99 (108)
T smart00144 96 GREP 99 (108)
T ss_pred CCCc
Confidence 8888
No 118
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=72.70 E-value=18 Score=29.64 Aligned_cols=59 Identities=5% Similarity=0.134 Sum_probs=42.7
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+.++|+..++.++| +...||.+|-+. ++++....-+-++|.++. .+..+++-+++||.|
T Consensus 17 ~~m~I~VNG~~~~~--~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~I 75 (84)
T PRK06083 17 VLITISINDQSIQV--DISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAI 75 (84)
T ss_pred ceEEEEECCeEEEc--CCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEE
Confidence 34444444555544 567788877664 478888888889999984 446778889999999
No 119
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=71.29 E-value=6.5 Score=34.53 Aligned_cols=52 Identities=19% Similarity=0.308 Sum_probs=39.0
Q ss_pred EeCC-CCcHHHHHHHHHHhh----C------CCcCCeEEEeCC-----------------eec---CCCCCcccCCCCCC
Q psy11489 27 EIEE-DASVTDFKEAVAKKF----N------ALPEQLCLIFAG-----------------KIM---KDHENLSNHNMKDG 75 (433)
Q Consensus 27 ~V~~-~~TV~~LK~~I~~~~----~------ip~~~qrLIf~G-----------------kiL---kD~~tLs~~gI~dg 75 (433)
.|+. +.||++|++.|.++. + +..|.++|+++- -+| +|+.+|.++||.+.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 3776 889999999997653 3 344677777543 266 66779999999999
Q ss_pred CeE
Q psy11489 76 LTS 78 (433)
Q Consensus 76 ~tV 78 (433)
..|
T Consensus 101 TEi 103 (122)
T PF10209_consen 101 TEI 103 (122)
T ss_pred cee
Confidence 888
No 120
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=71.21 E-value=1.4 Score=33.79 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=11.1
Q ss_pred ccCcHHHHHHHHHHhcCcH
Q psy11489 394 MMQAPYMQSMLQAMSADPS 412 (433)
Q Consensus 394 m~~~P~~~~mmq~l~sNP~ 412 (433)
+.++|.+++|-+.+.+||+
T Consensus 4 Lr~~Pqf~~lR~~vq~NP~ 22 (59)
T PF09280_consen 4 LRNNPQFQQLRQLVQQNPQ 22 (59)
T ss_dssp GTTSHHHHHHHHHHHC-GG
T ss_pred HHcChHHHHHHHHHHHCHH
Confidence 4456666666666666664
No 121
>KOG2561|consensus
Probab=69.55 E-value=3.2 Score=43.92 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=49.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 24 QNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 24 ~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..++.....|-.+|..+|+++++|+-..+|.|-+||+|.-.+||.+-|++.+...
T Consensus 52 ~l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~ 106 (568)
T KOG2561|consen 52 NLKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQEL 106 (568)
T ss_pred hhhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHH
Confidence 4566677888999999999999999999999999999999999999999988765
No 122
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=67.48 E-value=35 Score=26.18 Aligned_cols=47 Identities=21% Similarity=0.324 Sum_probs=34.9
Q ss_pred EeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 27 EIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 27 ~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+++...||.+|.+. .++....+.+-.+++++.. +..+++-+++||.|
T Consensus 11 ~~~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~I 57 (66)
T PRK08053 11 QCAAGQTVHELLEQ----LNQLQPGAALAINQQIIPR-EQWAQHIVQDGDQI 57 (66)
T ss_pred EcCCCCCHHHHHHH----cCCCCCcEEEEECCEEeCh-HHcCccccCCCCEE
Confidence 34677899988865 4555567888899999853 34556679999999
No 123
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=67.38 E-value=35 Score=27.27 Aligned_cols=43 Identities=21% Similarity=0.444 Sum_probs=34.1
Q ss_pred eEEEEeCCCCcHHHHHHHHHHhhCCC--cCCeEEE--e----CCeecCCCC
Q psy11489 23 KQNIEIEEDASVTDFKEAVAKKFNAL--PEQLCLI--F----AGKIMKDHE 65 (433)
Q Consensus 23 ~~~i~V~~~~TV~~LK~~I~~~~~ip--~~~qrLI--f----~GkiLkD~~ 65 (433)
..+|.|+.++|..++-+.+.+++++. +++..|+ + ..|.|.|++
T Consensus 14 ~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e 64 (87)
T cd01768 14 YKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDE 64 (87)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCC
Confidence 47899999999999999999999987 4555665 2 345777776
No 124
>KOG4250|consensus
Probab=66.41 E-value=17 Score=40.63 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=38.6
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCC
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHE 65 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~ 65 (433)
..+++-|+++.|+..|++.|++.+|+|...|.|+|.|...-+.+
T Consensus 325 ~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h~~~ 368 (732)
T KOG4250|consen 325 TSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSHLED 368 (732)
T ss_pred eEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccccCc
Confidence 46888999999999999999999999999999999987554443
No 125
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=66.33 E-value=12 Score=30.91 Aligned_cols=41 Identities=22% Similarity=0.419 Sum_probs=36.6
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeE-EEeCCeecC
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKFNALPEQLC-LIFAGKIMK 62 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qr-LIf~GkiLk 62 (433)
.++++.|+.++|=.++|+.|+..|++.+...+ +++.||.-+
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceE
Confidence 47999999999999999999999999998885 678888655
No 126
>PRK07440 hypothetical protein; Provisional
Probab=66.12 E-value=29 Score=27.18 Aligned_cols=57 Identities=18% Similarity=0.287 Sum_probs=41.2
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+| .++. ++++...||.+|-+ ..+++.+...+-++|+++.- ....++-+++||.|
T Consensus 5 m~i~v--NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~I 61 (70)
T PRK07440 5 ITLQV--NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRL 61 (70)
T ss_pred eEEEE--CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEE
Confidence 44444 3444 44567889988775 45788888899999998863 34566779999999
No 127
>smart00455 RBD Raf-like Ras-binding domain.
Probab=65.31 E-value=21 Score=28.16 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=37.1
Q ss_pred EEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCC
Q psy11489 16 VVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAG 58 (433)
Q Consensus 16 ~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~G 58 (433)
.|-.+++ ...|.+.++.||.|+=+.+-++.++.++...|.+.|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 4556664 678999999999999999999999999999888865
No 128
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=64.48 E-value=6.5 Score=32.36 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=28.0
Q ss_pred EEeCC-CCcHHHHHHHHHH-hhCCCcC----CeEEEeCCee----cCCCCCcccCCCCCCCeE
Q psy11489 26 IEIEE-DASVTDFKEAVAK-KFNALPE----QLCLIFAGKI----MKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 26 i~V~~-~~TV~~LK~~I~~-~~~ip~~----~qrLIf~Gki----LkD~~tLs~~gI~dg~tV 78 (433)
|.++. .+|+.+|-++|-+ ++|.... .-++||..-. -..+++|+++||++|+.+
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L 64 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSIL 64 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEE
Confidence 44443 6899999998754 5665442 3345554432 111248999999999988
No 129
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=63.89 E-value=15 Score=32.36 Aligned_cols=60 Identities=17% Similarity=0.318 Sum_probs=41.5
Q ss_pred CceEEEEEEcC---CCeEEE-EeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCccc
Q psy11489 10 KKLITIVVKTP---KEKQNI-EIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSN 69 (433)
Q Consensus 10 ~~~i~V~VKt~---~~~~~i-~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~ 69 (433)
+..|-|.|--. +++..+ -|+.+.||.+|...|.++.++.++++=|..++.++.-+.++++
T Consensus 25 PdrIPVIvEk~~~s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 25 PGHVAVVVEAAEKAGSKVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred CCccEEEEeecCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence 34566666542 234445 6899999999999999999999998544344445555556655
No 130
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=63.63 E-value=20 Score=28.51 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=36.7
Q ss_pred EEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCC
Q psy11489 15 IVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAG 58 (433)
Q Consensus 15 V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~G 58 (433)
++|-.+++ .-.|.|.+..||.|+=+++.++.++.++...|.+.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 45666765 677899999999999999999999999988776664
No 131
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=63.34 E-value=40 Score=26.92 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=30.6
Q ss_pred EEEeCC-CCcHHHHHHHHHHhhC-----CCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 25 NIEIEE-DASVTDFKEAVAKKFN-----ALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 25 ~i~V~~-~~TV~~LK~~I~~~~~-----ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+++++. ..||.+|++.+.+++. ......++-.+++...+ +.-|++||.|
T Consensus 18 ~~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeV 72 (81)
T PRK11130 18 ALELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEV 72 (81)
T ss_pred eEEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEE
Confidence 344543 4799999999988862 12233444445543322 3469999999
No 132
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=62.66 E-value=35 Score=25.75 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=32.8
Q ss_pred EEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 26 IEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 26 i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
++++...||.+|.+.+ ++. ....+-++|+++..++ ..+.-+++||+|
T Consensus 10 ~~~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~v 56 (65)
T PRK06944 10 LSLPDGATVADALAAY----GAR-PPFAVAVNGDFVARTQ-HAARALAAGDRL 56 (65)
T ss_pred EECCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCchh-cccccCCCCCEE
Confidence 4556778999988765 333 3567789998875332 334458999999
No 133
>KOG2086|consensus
Probab=60.76 E-value=16 Score=37.96 Aligned_cols=67 Identities=13% Similarity=0.269 Sum_probs=50.0
Q ss_pred eEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhh-CCCcCCeEEE--eCCeecCCCC-CcccCCCCCCCeE
Q psy11489 12 LITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKF-NALPEQLCLI--FAGKIMKDHE-NLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~-~ip~~~qrLI--f~GkiLkD~~-tLs~~gI~dg~tV 78 (433)
+-.|.||..++ .+...+....||.+++..|...- +-...-+-|+ |=-|.|.|+. ||++.|+++-..|
T Consensus 305 tTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 305 TTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred cceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 45788888764 67777888899999999998654 3444455555 6678998876 9999999876544
No 134
>PRK01777 hypothetical protein; Validated
Probab=60.09 E-value=51 Score=27.62 Aligned_cols=62 Identities=18% Similarity=0.085 Sum_probs=40.0
Q ss_pred eEEEEEEcC--CC--eEEEEeCCCCcHHHHHHHHHHhhCCCcC--C-----eEEEeCCeecCCCCCcccCCCCCCCeEec
Q psy11489 12 LITIVVKTP--KE--KQNIEIEEDASVTDFKEAVAKKFNALPE--Q-----LCLIFAGKIMKDHENLSNHNMKDGLTSLK 80 (433)
Q Consensus 12 ~i~V~VKt~--~~--~~~i~V~~~~TV~~LK~~I~~~~~ip~~--~-----qrLIf~GkiLkD~~tLs~~gI~dg~tV~~ 80 (433)
.|+|.|-+. .. ...++|+...||.++=+.. |++.+ + .++.-.||..+- +.-+++||.|.+
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVeI 73 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVEI 73 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEEE
Confidence 577777763 32 3678899999999876654 44444 2 344455665543 457899999944
Q ss_pred cc
Q psy11489 81 QL 82 (433)
Q Consensus 81 ~~ 82 (433)
-.
T Consensus 74 yr 75 (95)
T PRK01777 74 YR 75 (95)
T ss_pred ec
Confidence 43
No 135
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=59.84 E-value=22 Score=29.40 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=43.1
Q ss_pred EEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeE-EE------eCCeecCCCCCc----ccCCCCCCC
Q psy11489 15 IVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLC-LI------FAGKIMKDHENL----SNHNMKDGL 76 (433)
Q Consensus 15 V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qr-LI------f~GkiLkD~~tL----s~~gI~dg~ 76 (433)
|+|-..+ ....|.|+..+|+.++=+.+..+.++..+.=. |+ +=.|.++|++.| +.-++..+.
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdvl~~W~~~~~n 78 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEVLSTWHSAGNS 78 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHHHHhcccCCCc
Confidence 4444444 47899999999999999999999988765433 32 335788888754 444553333
No 136
>KOG3439|consensus
Probab=58.84 E-value=40 Score=29.19 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=46.6
Q ss_pred ceEEEEEEcCCC-----eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecC---CCC--CcccCCCCCC
Q psy11489 11 KLITIVVKTPKE-----KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMK---DHE--NLSNHNMKDG 75 (433)
Q Consensus 11 ~~i~V~VKt~~~-----~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLk---D~~--tLs~~gI~dg 75 (433)
..|.|.+|..++ +-.+.|+++.||+.+-..|.+..+++..++-++|-..-.. |.. +|.+|--.||
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~Ly~cf~~d~ 103 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNLYECFGTDG 103 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHHHHHhcCCCC
Confidence 456666665543 3567899999999999999999999999998888766443 332 5555543444
No 137
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=58.82 E-value=29 Score=26.65 Aligned_cols=50 Identities=10% Similarity=0.286 Sum_probs=36.9
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 21 KEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 21 ~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
++.+++ +...||.+|=+. .+++.+.+.+.++|++++.++- +.+ +++||.|
T Consensus 7 G~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~i 56 (65)
T PRK05863 7 EEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDW-ATK-LRDGARL 56 (65)
T ss_pred CEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHh-hhh-cCCCCEE
Confidence 344444 567788777654 5889999999999998875542 345 9999999
No 138
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=56.81 E-value=26 Score=29.16 Aligned_cols=41 Identities=32% Similarity=0.383 Sum_probs=36.0
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeE-EEeCCeecC
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKFNALPEQLC-LIFAGKIMK 62 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qr-LIf~GkiLk 62 (433)
+++.+.|+.++|=.++|+.|++.|++.+...+ +++.||.=+
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~kr 62 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKR 62 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCceee
Confidence 58999999999999999999999999999885 678887543
No 139
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=56.32 E-value=22 Score=28.84 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=35.9
Q ss_pred EEEEcCC--CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEe--CCeecCCCCCccc
Q psy11489 15 IVVKTPK--EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIF--AGKIMKDHENLSN 69 (433)
Q Consensus 15 V~VKt~~--~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf--~GkiLkD~~tLs~ 69 (433)
++|+..+ .++-|.. .++.+|+.+..++++++.+..+|+. .|-++.|++-+..
T Consensus 5 ~kv~~~~r~~k~Gv~A---~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t 60 (78)
T PF02017_consen 5 FKVRNHDRSVKKGVAA---SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT 60 (78)
T ss_dssp EEEEETTSSCEEEEEE---SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC
T ss_pred EEEecCCCCceEeEEc---CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh
Confidence 3455533 4565554 4699999999999999976666654 8888888765443
No 140
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=53.03 E-value=48 Score=25.12 Aligned_cols=48 Identities=13% Similarity=0.206 Sum_probs=36.5
Q ss_pred EEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 26 IEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 26 i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
++++...||.+|-+. ++++.+...+.++|+++.-+ ...+.-+++||.|
T Consensus 10 ~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~v 57 (66)
T PRK05659 10 RELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVV 57 (66)
T ss_pred EEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEE
Confidence 355677888887654 58888888899999888744 3445568999999
No 141
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=52.49 E-value=30 Score=29.14 Aligned_cols=38 Identities=29% Similarity=0.350 Sum_probs=34.1
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeE-EEeCCe
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKFNALPEQLC-LIFAGK 59 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qr-LIf~Gk 59 (433)
+++.+.|+.++|=.++|+.|++.|++-+.... |+.+|+
T Consensus 22 nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k 60 (94)
T COG0089 22 NKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGK 60 (94)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCc
Confidence 58999999999999999999999999999885 667775
No 142
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=51.48 E-value=49 Score=26.93 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=36.8
Q ss_pred eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEe-CCeecCCCCCcccCCCCCCCeE
Q psy11489 23 KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIF-AGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 23 ~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf-~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.+.+.++...||+++-+ .+|||..+..+|+ +|+...= +|-+++|+.|
T Consensus 24 ~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v 71 (81)
T PF14451_consen 24 PFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRV 71 (81)
T ss_pred ceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCC-----cccCCCCCEE
Confidence 46778889999988764 4799999998775 6665432 5889999999
No 143
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=51.05 E-value=51 Score=26.15 Aligned_cols=54 Identities=19% Similarity=0.398 Sum_probs=38.3
Q ss_pred eEEEEEEcCCC---eEEEEeCCCCcHHHHHHHHHHhhCC--CcCCeEEE----eCC--eecCCCC
Q psy11489 12 LITIVVKTPKE---KQNIEIEEDASVTDFKEAVAKKFNA--LPEQLCLI----FAG--KIMKDHE 65 (433)
Q Consensus 12 ~i~V~VKt~~~---~~~i~V~~~~TV~~LK~~I~~~~~i--p~~~qrLI----f~G--kiLkD~~ 65 (433)
.|+|....... ..+|.|..++|+.++-+.+.+++++ .++...|. ..| |+|.|++
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E 68 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDE 68 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTS
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCC
Confidence 35555544321 5678999999999999999999998 44566773 222 4777766
No 144
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=50.49 E-value=44 Score=28.86 Aligned_cols=68 Identities=21% Similarity=0.363 Sum_probs=45.6
Q ss_pred CceEEEEEEcCC-------CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCe-ecCCCCCccc----CCCCCCCe
Q psy11489 10 KKLITIVVKTPK-------EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGK-IMKDHENLSN----HNMKDGLT 77 (433)
Q Consensus 10 ~~~i~V~VKt~~-------~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~Gk-iLkD~~tLs~----~gI~dg~t 77 (433)
++.|-|.|.... ++-.+-|+.+.||.+|...|.++..+.+++--.+|-+. +..-+.++++ |+-.|| .
T Consensus 22 p~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DG-f 100 (112)
T cd01611 22 PDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDG-F 100 (112)
T ss_pred CCceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCCCC-E
Confidence 345666666321 23456689999999999999999999888755555555 4455556654 454455 5
Q ss_pred E
Q psy11489 78 S 78 (433)
Q Consensus 78 V 78 (433)
+
T Consensus 101 L 101 (112)
T cd01611 101 L 101 (112)
T ss_pred E
Confidence 5
No 145
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=48.85 E-value=37 Score=33.21 Aligned_cols=44 Identities=18% Similarity=0.325 Sum_probs=33.3
Q ss_pred eEEEEEEcC---CC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE
Q psy11489 12 LITIVVKTP---KE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLI 55 (433)
Q Consensus 12 ~i~V~VKt~---~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI 55 (433)
.|.|+++-. .+ .|++.+...+|-.+|-++|+++.+++++.+||.
T Consensus 176 rv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 176 RVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp EEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred eEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 366666652 22 699999999999999999999999999999985
No 146
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=48.57 E-value=1.1e+02 Score=24.06 Aligned_cols=49 Identities=22% Similarity=0.403 Sum_probs=37.2
Q ss_pred EEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 25 NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 25 ~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+++++...||.+|-+. .+++.+...+.++|.++..+ -..++-+++||.|
T Consensus 11 ~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~i 59 (68)
T COG2104 11 EVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRI 59 (68)
T ss_pred EEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEE
Confidence 3455666899988754 68888999999999988643 3456678888988
No 147
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=48.20 E-value=24 Score=29.82 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=20.1
Q ss_pred EEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 53 CLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 53 rLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.|-|+||.|.++.+|++| |..+..-
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKt 27 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKT 27 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcce
Confidence 578999999999999999 5544443
No 148
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=47.78 E-value=66 Score=24.87 Aligned_cols=53 Identities=9% Similarity=0.169 Sum_probs=37.7
Q ss_pred cCCCeEEEEeCCC-CcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 19 TPKEKQNIEIEED-ASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 19 t~~~~~~i~V~~~-~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..++.++ ++.. .||.+|-+ ..++++...-+-++|+++.- +...++-+++||.|
T Consensus 5 vNG~~~~--~~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r-~~w~~~~L~~gD~i 58 (67)
T PRK07696 5 INGNQIE--VPESVKTVAELLT----HLELDNKIVVVERNKDILQK-DDHTDTSVFDGDQI 58 (67)
T ss_pred ECCEEEE--cCCCcccHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEE
Confidence 3344444 4454 57877765 35788888888999998863 35666779999999
No 149
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=47.68 E-value=46 Score=26.77 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=35.9
Q ss_pred EEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEE--EeCCeecCCCCCccc
Q psy11489 15 IVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCL--IFAGKIMKDHENLSN 69 (433)
Q Consensus 15 V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrL--If~GkiLkD~~tLs~ 69 (433)
++|+..+.....-|.. .+..+|+.+..+++.++....+| --.|-++.|++-+..
T Consensus 3 ~kV~~~~r~~k~GV~A-~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t 58 (74)
T smart00266 3 FKVRDHDRNVRKGVAA-SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT 58 (74)
T ss_pred EEEecCCCCeeEEEEc-CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc
Confidence 3455544333333322 36999999999999998655554 458999988875544
No 150
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=47.44 E-value=49 Score=27.24 Aligned_cols=44 Identities=9% Similarity=0.115 Sum_probs=35.1
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcC-CeEEEe
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPE-QLCLIF 56 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~-~qrLIf 56 (433)
|+|++...++.+...++...|-.+|.+++.+.+....+ -..+-|
T Consensus 1 i~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw 45 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKW 45 (83)
T ss_pred CeEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEE
Confidence 46677777888888899999999999999999988764 345533
No 151
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=46.86 E-value=46 Score=27.04 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=36.0
Q ss_pred EEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCe--EEEeCCeecCCCCCcccC
Q psy11489 15 IVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQL--CLIFAGKIMKDHENLSNH 70 (433)
Q Consensus 15 V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~q--rLIf~GkiLkD~~tLs~~ 70 (433)
++|+..+.+...-|.. .+..+|+.+..+++.++.... +|--.|-++.|++.+..+
T Consensus 5 ~kV~~~~r~~k~GV~A-~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~tL 61 (78)
T cd01615 5 FKVCDSDRSRKKGVAA-SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTL 61 (78)
T ss_pred EEEecCCCCeeEEEEc-CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhcC
Confidence 3455544333333322 369999999999999965544 445689899888755443
No 152
>KOG4361|consensus
Probab=46.10 E-value=12 Score=38.58 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=50.0
Q ss_pred CceEEEEEEcCCCeEEEEeCCCCcHH---HHHHHHHHhhCCCcCCe--EEEeCCeecCCCC-CcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKEKQNIEIEEDASVT---DFKEAVAKKFNALPEQL--CLIFAGKIMKDHE-NLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~~~~i~V~~~~TV~---~LK~~I~~~~~ip~~~q--rLIf~GkiLkD~~-tLs~~gI~dg~tV 78 (433)
...+.|++++..--+.+.|.+..+-. ++|+...+..++.-.++ +++|.++.|+|.. .|..+++++-+.|
T Consensus 59 p~~~~v~~~~~~~~~~~~i~p~~~~g~~~d~a~~~~~~ag~sh~d~~~k~~y~~~e~rd~~l~l~~~g~p~~sk~ 133 (344)
T KOG4361|consen 59 PFGIRVQIEYGQLGHGLAIVPQYPSGNALDLAKPLTEDAGLSHYDQEVKLVYVDKELRDQSLRLSSAGVPDASKI 133 (344)
T ss_pred CCCccceeeecccccccccccccccccchhhhcccccccceeecccccccceecccccccccccccccCcccccc
Confidence 34567777765444455554544333 77777777777766555 9999999999998 8999999998888
No 153
>KOG0007|consensus
Probab=45.62 E-value=9.6 Score=39.12 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=38.8
Q ss_pred CeEEEEeC-CCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCC
Q psy11489 22 EKQNIEIE-EDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHEN 66 (433)
Q Consensus 22 ~~~~i~V~-~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~t 66 (433)
....+.+. .+..|..||.+|...++++++-+++.|.|..|+|...
T Consensus 293 ~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~ 338 (341)
T KOG0007|consen 293 QVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRS 338 (341)
T ss_pred ceeeeccccccccccccccccccccccchhheeeccCCcccCcccc
Confidence 35566666 6778999999999999999999999999999999843
No 154
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=45.02 E-value=32 Score=29.40 Aligned_cols=60 Identities=23% Similarity=0.439 Sum_probs=40.7
Q ss_pred CceEEEEEEc-CC------CeEEEEeCCCCcHHHHHHHHHHhhCCCcCC-eEEEeCCeecCCCCCccc
Q psy11489 10 KKLITIVVKT-PK------EKQNIEIEEDASVTDFKEAVAKKFNALPEQ-LCLIFAGKIMKDHENLSN 69 (433)
Q Consensus 10 ~~~i~V~VKt-~~------~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~-qrLIf~GkiLkD~~tLs~ 69 (433)
++.|-|.|.- .+ ++..+=|+.+.||.+|...|.++..+++++ +-|..++..+..+.++++
T Consensus 14 P~~IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~e 81 (104)
T PF02991_consen 14 PDKIPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGE 81 (104)
T ss_dssp TTEEEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHH
T ss_pred CCccEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHH
Confidence 3456666653 22 234556889999999999999999998765 556666656666667765
No 155
>PF12053 DUF3534: Domain of unknown function (DUF3534); InterPro: IPR021922 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length. This domain is found associated with PF00595 from PFAM. This domain has a conserved GILD sequence motif. ; PDB: 2NS5_A.
Probab=44.96 E-value=92 Score=28.30 Aligned_cols=65 Identities=14% Similarity=0.239 Sum_probs=36.9
Q ss_pred EEEEEEcCCCeEEEEeCC-CCcHHHHHHHHHHhh----CCCcCCe----EEE-eCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKEKQNIEIEE-DASVTDFKEAVAKKF----NALPEQL----CLI-FAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~-~~TV~~LK~~I~~~~----~ip~~~q----rLI-f~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+|.....++.|-+.. +.||.+|-++.-.+| +..++.. +|- -.|-+|..++.|.+. +.|.+.|
T Consensus 1 mkvtV~fg~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~~~~~~~v~V~~l~~~dggiLd~DD~l~dV-~dd~d~l 75 (145)
T PF12053_consen 1 MKVTVCFGRTRVVVPCGDGQLTVRDLIQQALRRYRKAKEKDPDYWVVVHHLEYTDGGILDPDDVLCDV-VDDRDQL 75 (145)
T ss_dssp -EEEEEETTEEEEEEESSS---HHHHHHHHHHHHHHHTT--TTS-EEEEEEE-SSS-EE-TTS-HHHH-S-TTEEE
T ss_pred CeEEEEeCCeEEEEEeCCCCccHHHHHHHHhHhHHHhhccCCCceEEEeeEEecCCceeccccceeEe-ccChhhh
Confidence 689999988888888875 589999987775554 3333322 233 245567666677665 4567777
No 156
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=44.82 E-value=50 Score=26.85 Aligned_cols=52 Identities=12% Similarity=0.185 Sum_probs=36.6
Q ss_pred EEEEcCCC--eEEEEeCCCCcHHHHHHHHHHhhCCCcC--CeEEEeCCeecCCCCCccc
Q psy11489 15 IVVKTPKE--KQNIEIEEDASVTDFKEAVAKKFNALPE--QLCLIFAGKIMKDHENLSN 69 (433)
Q Consensus 15 V~VKt~~~--~~~i~V~~~~TV~~LK~~I~~~~~ip~~--~qrLIf~GkiLkD~~tLs~ 69 (433)
++|+..+. ++-|. -.+..+|+.++.+++.++.. .++|--.|.+++|++.+..
T Consensus 5 fkV~~~~r~~k~GV~---A~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~ 60 (78)
T cd06539 5 FRVSNHDRSSRRGVM---ASSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQT 60 (78)
T ss_pred EEEecCCCCceEEEE---ecCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhh
Confidence 45555443 44443 23699999999999999754 5566788999988875544
No 157
>CHL00030 rpl23 ribosomal protein L23
Probab=44.15 E-value=47 Score=27.80 Aligned_cols=39 Identities=10% Similarity=0.127 Sum_probs=34.1
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeE-EEeCCee
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKFNALPEQLC-LIFAGKI 60 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qr-LIf~Gki 60 (433)
.++.+.|+.++|=.++|+.|+..|++.+...+ ++..||.
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k~ 59 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRKK 59 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCCc
Confidence 58999999999999999999999999998885 5667763
No 158
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=43.89 E-value=1.2e+02 Score=25.43 Aligned_cols=69 Identities=19% Similarity=0.329 Sum_probs=44.6
Q ss_pred CceEEEEEEcCC--CeEEEEeCCCCcHHHHHHHHHHh--hCCCc---C-CeEEEeCCe--ecCCCCCcccCC-----CCC
Q psy11489 10 KKLITIVVKTPK--EKQNIEIEEDASVTDFKEAVAKK--FNALP---E-QLCLIFAGK--IMKDHENLSNHN-----MKD 74 (433)
Q Consensus 10 ~~~i~V~VKt~~--~~~~i~V~~~~TV~~LK~~I~~~--~~ip~---~-~qrLIf~Gk--iLkD~~tLs~~g-----I~d 74 (433)
+..|.|.|...+ .+++|.|+.+.|+.+|-+.+-.+ ..... + +..|=-.|+ -|-.+..|.+|. ++.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~ 93 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKR 93 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHC
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhc
Confidence 456888888874 37999999999999999888665 12211 2 567767776 455667888874 355
Q ss_pred CCeE
Q psy11489 75 GLTS 78 (433)
Q Consensus 75 g~tV 78 (433)
+-.+
T Consensus 94 ~~~~ 97 (106)
T PF00794_consen 94 GKDP 97 (106)
T ss_dssp T--E
T ss_pred CCCc
Confidence 5566
No 159
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=43.00 E-value=1.4e+02 Score=25.90 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=39.2
Q ss_pred eEEEEEEcCCCe---EEEEeCCCCcHHHHHHHHHHhhCCC-----cCCeEEE---eCC--eecCCCC
Q psy11489 12 LITIVVKTPKEK---QNIEIEEDASVTDFKEAVAKKFNAL-----PEQLCLI---FAG--KIMKDHE 65 (433)
Q Consensus 12 ~i~V~VKt~~~~---~~i~V~~~~TV~~LK~~I~~~~~ip-----~~~qrLI---f~G--kiLkD~~ 65 (433)
.|++.....+++ ..|.|..++|+.++-+.+-++|.++ +.+.-|. -+| |.|+|++
T Consensus 23 vmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~nGe~RKL~d~E 89 (112)
T cd01782 23 VMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHENGEERRLLDDE 89 (112)
T ss_pred EEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecCCceEEcCCcC
Confidence 477777776654 5688999999999999999999855 3444442 234 6777765
No 160
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=42.91 E-value=63 Score=33.18 Aligned_cols=48 Identities=6% Similarity=0.163 Sum_probs=38.0
Q ss_pred EEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 26 IEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 26 i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
++++...||.+|-+. ++++.+.+.+.++|++++ .+...++-|++||.|
T Consensus 10 ~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~I 57 (326)
T PRK11840 10 RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVP-RSEYGQVALEEGDEL 57 (326)
T ss_pred EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECC-HHHcCccccCCCCEE
Confidence 445677888887754 588999999999999995 345667789999999
No 161
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=42.38 E-value=1.4e+02 Score=23.87 Aligned_cols=54 Identities=19% Similarity=0.469 Sum_probs=38.5
Q ss_pred eEEEEEEc-CCC-eEEEEeCCCCcHHHHHHHHHHhhCCCc--CCeEEE--e-CC--eecCCCC
Q psy11489 12 LITIVVKT-PKE-KQNIEIEEDASVTDFKEAVAKKFNALP--EQLCLI--F-AG--KIMKDHE 65 (433)
Q Consensus 12 ~i~V~VKt-~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~--~~qrLI--f-~G--kiLkD~~ 65 (433)
.|+|..-. .+. ..+|.|..++|+.++=+.+.+++++.. +...|+ + .| ++|.|++
T Consensus 4 ~lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e 66 (90)
T smart00314 4 VLRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDE 66 (90)
T ss_pred EEEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCC
Confidence 35555543 223 578999999999999999999999875 455554 3 44 5777665
No 162
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=42.23 E-value=39 Score=33.10 Aligned_cols=73 Identities=11% Similarity=0.210 Sum_probs=48.9
Q ss_pred CceEEEEEEcC--C-Ce----EEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCC----e--ecCCCCCcccCCCCCCC
Q psy11489 10 KKLITIVVKTP--K-EK----QNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAG----K--IMKDHENLSNHNMKDGL 76 (433)
Q Consensus 10 ~~~i~V~VKt~--~-~~----~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~G----k--iLkD~~tLs~~gI~dg~ 76 (433)
...|-|++|.- . .+ -.+-|+.+.+|.+|-..|.++.|+|++.--++|.- + .++...|+....|.+|+
T Consensus 66 ~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~Gd 145 (249)
T PF12436_consen 66 SDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGD 145 (249)
T ss_dssp TTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTE
T ss_pred CCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCC
Confidence 45789999973 2 33 24678899999999999999999999765555543 3 46667799999999999
Q ss_pred eEeccc
Q psy11489 77 TSLKQL 82 (433)
Q Consensus 77 tV~~~~ 82 (433)
.|.+..
T Consensus 146 Ii~fQ~ 151 (249)
T PF12436_consen 146 IICFQR 151 (249)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 994443
No 163
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=41.42 E-value=73 Score=26.81 Aligned_cols=39 Identities=13% Similarity=0.245 Sum_probs=31.1
Q ss_pred EEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEe
Q psy11489 17 VKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIF 56 (433)
Q Consensus 17 VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf 56 (433)
+++.+ ++.-|.|+.+.|..+|+.++++.+++... ++|=|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 45544 57788999999999999999999999876 44433
No 164
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=41.24 E-value=1e+02 Score=24.23 Aligned_cols=57 Identities=12% Similarity=0.276 Sum_probs=38.9
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhh---CCCcCCeEEE-eCCeecCCCCCcccCCCCCCCeE
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKF---NALPEQLCLI-FAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~---~ip~~~qrLI-f~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+...|+...+...--..++.-+.+ +-|++.-.|- -+|.+|+-++.++|||+..|.++
T Consensus 6 qPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkL 66 (76)
T PF10790_consen 6 QPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKL 66 (76)
T ss_pred CceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceE
Confidence 345555555555444444444433 5677766654 67888888889999999999999
No 165
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=39.96 E-value=1.1e+02 Score=25.24 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=43.8
Q ss_pred EEEEEEcCC-----CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCee-cC-CCCCccc---CCCCCCCeE
Q psy11489 13 ITIVVKTPK-----EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKI-MK-DHENLSN---HNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-----~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~Gki-Lk-D~~tLs~---~gI~dg~tV 78 (433)
|+|..|..+ ++-.+.|+.+.||.+|...|.++.++.+++-..+|-+.. +. .++++++ +- +++..+
T Consensus 2 v~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfL 76 (87)
T cd01612 2 VTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGEL 76 (87)
T ss_pred eEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEE
Confidence 456666543 245677899999999999999999998877666666664 32 3345433 23 445556
No 166
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=39.65 E-value=63 Score=26.85 Aligned_cols=51 Identities=22% Similarity=0.293 Sum_probs=31.0
Q ss_pred EEeCCCCcHHHHHHHHHHhhCCCcCCeEEEe-CC------eecCCCC---Cc--ccCCCCCCCeE
Q psy11489 26 IEIEEDASVTDFKEAVAKKFNALPEQLCLIF-AG------KIMKDHE---NL--SNHNMKDGLTS 78 (433)
Q Consensus 26 i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf-~G------kiLkD~~---tL--s~~gI~dg~tV 78 (433)
++++...||.+|=+.+.+++. ..+-+|+. .| .+|-++. .| .++.+++||+|
T Consensus 23 ~~~~~~~tV~dll~~L~~~~~--~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v 85 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNLL--EERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHV 85 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhCc--hhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEE
Confidence 444457899999999988772 22233332 22 2333332 34 35789999999
No 167
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=39.54 E-value=94 Score=32.85 Aligned_cols=65 Identities=17% Similarity=0.320 Sum_probs=49.0
Q ss_pred EEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhh--CCCcCCeEEEeC----Cee--cCCCCCcccCCCCCCCeE
Q psy11489 14 TIVVKTPKEKQNIEIEEDASVTDFKEAVAKKF--NALPEQLCLIFA----GKI--MKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 14 ~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~--~ip~~~qrLIf~----Gki--LkD~~tLs~~gI~dg~tV 78 (433)
-+.+|+..+...++|.++++.+-|-.+|-.-+ +..++++.+.-+ |-+ +..++|+.++|++.|..+
T Consensus 2 i~rfRsk~G~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmL 74 (571)
T COG5100 2 IFRFRSKEGQRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQML 74 (571)
T ss_pred eEEEecCCCceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEE
Confidence 46777777889999999999999988886655 456666666532 221 344579999999999998
No 168
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=39.26 E-value=66 Score=26.29 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=36.3
Q ss_pred EEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCc----CCeEEEeCCeecCCCCCcccC
Q psy11489 15 IVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALP----EQLCLIFAGKIMKDHENLSNH 70 (433)
Q Consensus 15 V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~----~~qrLIf~GkiLkD~~tLs~~ 70 (433)
++|+..+.+...-|.. .+..+|+.+..+++.++. -.++|--.|-++.|++.+..+
T Consensus 5 fkV~~~~r~~k~GV~A-~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~tL 63 (80)
T cd06536 5 CVVCNVSRQKQHGVAA-SSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLCL 63 (80)
T ss_pred eEEecCCCCeeEeEEc-CCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhhC
Confidence 4455544333333322 369999999999999983 345566789999888755443
No 169
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=37.90 E-value=70 Score=25.84 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=30.4
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEE
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCL 54 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrL 54 (433)
.++.|.|+.++|=.++|+.|+..|++.+...+.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt 47 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNT 47 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 589999999999999999999999999988864
No 170
>KOG4147|consensus
Probab=36.54 E-value=93 Score=26.96 Aligned_cols=52 Identities=13% Similarity=0.296 Sum_probs=32.8
Q ss_pred EeCC-CCcHHHHHHHHHHhh----CCC------cCCeEEEeC----------------Ce-ecCCC-CCcccCCCCCCCe
Q psy11489 27 EIEE-DASVTDFKEAVAKKF----NAL------PEQLCLIFA----------------GK-IMKDH-ENLSNHNMKDGLT 77 (433)
Q Consensus 27 ~V~~-~~TV~~LK~~I~~~~----~ip------~~~qrLIf~----------------Gk-iLkD~-~tLs~~gI~dg~t 77 (433)
+|+. +.||++|+.-|-++. .++ .+.++++.. .+ +|+|+ ++|+.|||++...
T Consensus 28 d~dLad~Tvk~f~~~~~~~Iq~~~sl~pfRn~kfDtLKIy~~Ah~sKT~nLvinldhDd~w~L~d~~ktL~~~GIenETE 107 (127)
T KOG4147|consen 28 DVDLADQTVKEFIVFLKQDIQLRTSLPPFRNYKFDTLKIYHQAHKSKTNNLVINLDHDDRWLLKDEDKTLKAAGIENETE 107 (127)
T ss_pred ccchhHhhHHHHHHHHHHhcccCCCCCccccccccceeeehhhhhcccceEEEeccCCcceeecCccchHHHhccCcchh
Confidence 4555 779999988776553 222 234444422 22 56644 4999999998877
Q ss_pred E
Q psy11489 78 S 78 (433)
Q Consensus 78 V 78 (433)
|
T Consensus 108 i 108 (127)
T KOG4147|consen 108 I 108 (127)
T ss_pred h
Confidence 7
No 171
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=36.42 E-value=27 Score=24.34 Aligned_cols=38 Identities=13% Similarity=0.317 Sum_probs=27.1
Q ss_pred hHHHHHHhhhcCCCchhhh-hhc-cccCCcchHHHHHhhhc
Q psy11489 348 YRSQLDQLTAMGFVNREAN-LQG-SLFGNAGMQSMMQQMMA 386 (433)
Q Consensus 348 y~~QL~qL~~mGf~d~~~N-l~a-l~~~~g~~~~a~~~l~~ 386 (433)
|.+++++|++| |.+.... |+. +...+++++.+++.|++
T Consensus 1 ~~~~v~~L~~m-FP~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 1 REEMVQQLQEM-FPDLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp CHHHHHHHHHH-SSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 34678888887 6665444 443 55788999999998875
No 172
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=36.21 E-value=82 Score=25.68 Aligned_cols=55 Identities=16% Similarity=0.059 Sum_probs=36.1
Q ss_pred EEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCc-CCeEEEeCCeecCCCCCcccC
Q psy11489 15 IVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALP-EQLCLIFAGKIMKDHENLSNH 70 (433)
Q Consensus 15 V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~-~~qrLIf~GkiLkD~~tLs~~ 70 (433)
++|+..+.+...-|.. .+..+|+.++.+++.++. -.++|--.|-++.|++-+..+
T Consensus 5 ~kV~~~~rs~k~GV~A-~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~tL 60 (79)
T cd06538 5 FRVSNADRSLRKGIMA-DSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQAL 60 (79)
T ss_pred EEEecCCCceeEeEEc-CCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHhhC
Confidence 3444444333333322 369999999999999953 346677889999888755443
No 173
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=35.68 E-value=82 Score=25.80 Aligned_cols=61 Identities=13% Similarity=0.055 Sum_probs=38.8
Q ss_pred EEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCc-CCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 15 IVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALP-EQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 15 V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~-~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
++|+..+.....-|. -.+..+|+.+..+++.++. -.++|--.|.+++|++.+..+ .++..+
T Consensus 5 fkv~~~~r~~kkGV~-A~sL~EL~~K~~~~L~~~~~~~lvLeeDGT~Vd~EeyF~tL--pdnT~l 66 (81)
T cd06537 5 FRVCDHKRTVRKGLT-AASLQELLAKALETLLLSGVLTLVLEEDGTAVDSEDFFELL--EDDTCL 66 (81)
T ss_pred eEEecCCCCeeEeEE-ccCHHHHHHHHHHHhCCCCceEEEEecCCCEEccHHHHhhC--CCCCEE
Confidence 455555433333332 2369999999999998863 455666789899888755443 344444
No 174
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=35.51 E-value=77 Score=26.03 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=30.5
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEE
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCL 54 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrL 54 (433)
.++.|.|+.+.+=.++|+.|+..|++.+...+.
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT 54 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNT 54 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 579999999999999999999999999998864
No 175
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=35.29 E-value=28 Score=37.74 Aligned_cols=41 Identities=32% Similarity=0.544 Sum_probs=30.6
Q ss_pred HHHHHHhhhcCCCchhhhhhcc-ccCCcchHHHHHhhhc---ChHH
Q psy11489 349 RSQLDQLTAMGFVNREANLQGS-LFGNAGMQSMMQQMMA---NPQL 390 (433)
Q Consensus 349 ~~QL~qL~~mGf~d~~~Nl~al-~~~~g~~~~a~~~l~~---~P~~ 390 (433)
++-++||.+|||.-.++ .+|+ ..++-+-++||.+|++ ||++
T Consensus 559 qs~I~qL~~mGfp~~~~-~rAL~~tgNqDaEsAMNWLFqHMdDPdl 603 (749)
T COG5207 559 QSLIRQLVDMGFPEEDA-ARALGITGNQDAESAMNWLFQHMDDPDL 603 (749)
T ss_pred HHHHHHHHHcCCCHHHH-HHHHhhccCcchHHHHHHHHhhccCccc
Confidence 57799999999987544 5665 4456799999999954 5544
No 176
>KOG4146|consensus
Probab=34.61 E-value=2.4e+02 Score=23.81 Aligned_cols=48 Identities=23% Similarity=0.350 Sum_probs=31.7
Q ss_pred CCCcHHHHHHHHHHhhCCCcCCeEEEeCCe------ec-CCC--CCc--ccCCCCCCCeE
Q psy11489 30 EDASVTDFKEAVAKKFNALPEQLCLIFAGK------IM-KDH--ENL--SNHNMKDGLTS 78 (433)
Q Consensus 30 ~~~TV~~LK~~I~~~~~ip~~~qrLIf~Gk------iL-kD~--~tL--s~~gI~dg~tV 78 (433)
..+||.+|-..|..++--.+++ -+|..|. +| .|. +.| .+|.+++|+.|
T Consensus 34 ~~~tvgdll~yi~~~~ie~r~~-lFi~~gsvrpGii~lINd~DWEllekedy~ledgD~i 92 (101)
T KOG4146|consen 34 SPATVGDLLDYIFGKYIETRDS-LFIHHGSVRPGIIVLINDMDWELLEKEDYPLEDGDHI 92 (101)
T ss_pred CcccHHHHHHHHHHHHhcCCcc-eEeeCCcCcCcEEEEEeccchhhhcccccCcccCCEE
Confidence 3579999999998866333333 5666664 22 233 344 57999999998
No 177
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=34.50 E-value=2.6e+02 Score=23.12 Aligned_cols=66 Identities=9% Similarity=0.127 Sum_probs=46.0
Q ss_pred EEEEEEcCCC--eEEEEeCCCCcHHHHHHHHHHhh-C--CCc---CCeEEEeCC--eecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKE--KQNIEIEEDASVTDFKEAVAKKF-N--ALP---EQLCLIFAG--KIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~--~~~i~V~~~~TV~~LK~~I~~~~-~--ip~---~~qrLIf~G--kiLkD~~tLs~~gI~dg~tV 78 (433)
+-|+.+..++ ..-|-|+.++|+.++-++++.+. | +.+ ..+|+-+.| +.+..+.++.+.||+.=+.|
T Consensus 4 fPl~~~F~gDFv~~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~v 79 (85)
T PF06234_consen 4 FPLTANFEGDFVLQLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWV 79 (85)
T ss_dssp EEEEEEETT-SBEEEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEE
T ss_pred cceeEeeccceEEEEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEE
Confidence 4456666665 45678999999999999998765 2 322 356788999 89999999999999988877
No 178
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=33.14 E-value=79 Score=29.13 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=34.7
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeE-EEeCCeec
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKFNALPEQLC-LIFAGKIM 61 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qr-LIf~GkiL 61 (433)
.+|.|.|+.++|=.++|..|+..|++.+..++ ++..|+.-
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K~K 63 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKKPK 63 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCccc
Confidence 57999999999999999999999999998886 55777543
No 179
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=31.97 E-value=62 Score=30.86 Aligned_cols=48 Identities=13% Similarity=0.259 Sum_probs=27.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHhhCCCcC---C--eEEEeCCe-----ecCCCC--CcccCC
Q psy11489 24 QNIEIEEDASVTDFKEAVAKKFNALPE---Q--LCLIFAGK-----IMKDHE--NLSNHN 71 (433)
Q Consensus 24 ~~i~V~~~~TV~~LK~~I~~~~~ip~~---~--qrLIf~Gk-----iLkD~~--tLs~~g 71 (433)
|.|.|.++.|+.++|++|.+++|++.. . +.|+..++ -|.|++ .|.+.-
T Consensus 135 F~f~v~~gE~f~~tK~Rl~~rlgv~~keF~K~Kfaiv~~~~~~~~~yl~d~~~~il~~~~ 194 (213)
T PF14533_consen 135 FLFVVKPGETFSDTKERLQKRLGVSDKEFEKWKFAIVQNSRYSKPRYLEDDDDLILFDEI 194 (213)
T ss_dssp EEEEEETT--HHHHHHHHHHHH---HHHHTT-EEEEEETTEE---EE--TT-T----GGG
T ss_pred EEEEeeCCCcHHHHHHHHHHHhCCChhhheeEEEEEEecCCcccceeccccchhhhhhhh
Confidence 788999999999999999999998764 3 34555554 566654 554443
No 180
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=31.95 E-value=1.6e+02 Score=29.88 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=33.6
Q ss_pred ceEEEEEEcCCCeEEEEeCC-CCcHHHHHHHHH--HhhCCCcCCeEEEeCCe
Q psy11489 11 KLITIVVKTPKEKQNIEIEE-DASVTDFKEAVA--KKFNALPEQLCLIFAGK 59 (433)
Q Consensus 11 ~~i~V~VKt~~~~~~i~V~~-~~TV~~LK~~I~--~~~~ip~~~qrLIf~Gk 59 (433)
..|...+|+.++.-.|.++. ..+|.|||.+|- .+.|--.|-+-|+|+|.
T Consensus 3 svI~YrFkSqkn~SRI~FdGTGl~vfdlKrEII~q~Klg~g~DFdLl~yn~~ 54 (427)
T COG5222 3 SVINYRFKSQKNFSRISFDGTGLPVFDLKREIINQRKLGSGKDFDLLFYNGE 54 (427)
T ss_pred ceeEEEeeccCCcceeEeccCCccHHHHHHHHHHhhhccCCccceEEEecCC
Confidence 35777778766543344333 789999999884 45565567778889985
No 181
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=31.66 E-value=1.7e+02 Score=22.96 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=34.4
Q ss_pred EEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEe--CCeecCCCC
Q psy11489 15 IVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIF--AGKIMKDHE 65 (433)
Q Consensus 15 V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf--~GkiLkD~~ 65 (433)
+.|-.+++ .-.|.|.+..||.|+=.++-++.++.++...+.. ..|.|..++
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~ 56 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQ 56 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTS
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCC
Confidence 45556766 5668999999999999999999999998665543 344554433
No 182
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=27.84 E-value=2.1e+02 Score=24.20 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=32.5
Q ss_pred EEEcCCCe-EEEEeCCCCcHHHHHHHHHHhhCCCc-CCeEE-EeCC---eecC
Q psy11489 16 VVKTPKEK-QNIEIEEDASVTDFKEAVAKKFNALP-EQLCL-IFAG---KIMK 62 (433)
Q Consensus 16 ~VKt~~~~-~~i~V~~~~TV~~LK~~I~~~~~ip~-~~qrL-If~G---kiLk 62 (433)
.|--.+++ .++.+..+.||.|+-..+.+++.++. +.-+| +..| |+|.
T Consensus 6 RIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~l~RvL~ 58 (97)
T cd01775 6 RVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHDLSRVLR 58 (97)
T ss_pred EEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECCeeeecC
Confidence 33334444 67899999999999999999997766 33333 3444 4555
No 183
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=27.73 E-value=76 Score=26.00 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=35.1
Q ss_pred EEeCCCCcHHHHHHHHHHhhCCCcC-------CeEEEeCCe-ecCC------CCCcccCCCCCCCeE
Q psy11489 26 IEIEEDASVTDFKEAVAKKFNALPE-------QLCLIFAGK-IMKD------HENLSNHNMKDGLTS 78 (433)
Q Consensus 26 i~V~~~~TV~~LK~~I~~~~~ip~~-------~qrLIf~Gk-iLkD------~~tLs~~gI~dg~tV 78 (433)
|+|++++|+.+|-+.+.++..+.-. .-.|++.+- .|+. +++|.++ +.+|+.|
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei 66 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEI 66 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEE
Confidence 6889999999999999988433333 333444332 1221 2578999 9999988
No 184
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.49 E-value=3e+02 Score=23.35 Aligned_cols=70 Identities=20% Similarity=0.139 Sum_probs=41.2
Q ss_pred eEEEEEEc--CCC--eEEEEeCCCCcHHHHHHH--HH-HhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeEecccCc
Q psy11489 12 LITIVVKT--PKE--KQNIEIEEDASVTDFKEA--VA-KKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTSLKQLPL 84 (433)
Q Consensus 12 ~i~V~VKt--~~~--~~~i~V~~~~TV~~LK~~--I~-~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV~~~~~~ 84 (433)
.|.|.|-. +.. ...|.|....||.+--.. |- ...+++.+.-++=-=||..+.++. ++||+-|++.+|+
T Consensus 3 ~I~VevvyAlPerq~l~~v~v~egatV~dAi~~Sgll~~~~~idl~~n~~GI~~k~~kl~~~-----l~dgDRVEIyRPL 77 (99)
T COG2914 3 MIAVEVVYALPERQYLCRVQLQEGATVEDAILASGLLELFPDIDLHENKVGIYSKPVKLDDE-----LHDGDRVEIYRPL 77 (99)
T ss_pred eeEEEEEEEcCCcceEEEEEeccCcCHHHHHHhcchhhccccCCccccceeEEccccCcccc-----ccCCCEEEEeccc
Confidence 46666665 443 357889999999875432 22 233555555555322355544333 8899999666655
Q ss_pred cc
Q psy11489 85 TK 86 (433)
Q Consensus 85 ~~ 86 (433)
+.
T Consensus 78 la 79 (99)
T COG2914 78 LA 79 (99)
T ss_pred cc
Confidence 43
No 185
>KOG4842|consensus
Probab=27.00 E-value=11 Score=37.28 Aligned_cols=56 Identities=11% Similarity=0.074 Sum_probs=42.5
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCccc
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSN 69 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~ 69 (433)
|++..-+.+.++.++|+...+|.|.+..+.+...|.+.-.|+++.+ .|++...|-+
T Consensus 4 i~~~~~~~gn~i~ls~~~~~ri~D~~~~l~K~~~vss~~~kll~~~-llk~iahl~~ 59 (278)
T KOG4842|consen 4 IKTEGIKSGNAIYLSMAGSQRIPDKNPHLQKVAVVSSKPNKLLALN-LLKEIAHLVS 59 (278)
T ss_pred EEEEEEecCcEEEEEeccccccCCCCcccceeeeeccchHHHHhhh-hhhhhhhhhh
Confidence 3333334567899999999999999999999999999989998887 3444433333
No 186
>KOG4248|consensus
Probab=25.83 E-value=42 Score=39.25 Aligned_cols=50 Identities=10% Similarity=-0.097 Sum_probs=44.4
Q ss_pred CCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 29 EEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 29 ~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
-...++.-+|.+|..+++|+....+|+|.|..++++..++.|+.+.+.+.
T Consensus 342 ~~~~~~~~~~p~~~~qtgipi~~~~l~~vg~~~n~d~P~s~~~~e~~~~~ 391 (1143)
T KOG4248|consen 342 VVRPMSHYTTPMVLQQTGIPIQINVLTTVGMTGNGDRPPSTPNAEAPPPG 391 (1143)
T ss_pred ecchhhhccCceeeecccccccccceeeecccccCCCCCCccccccCCCC
Confidence 34556777799999999999999999999999999999999999888877
No 187
>KOG2507|consensus
Probab=25.70 E-value=1.4e+02 Score=31.85 Aligned_cols=68 Identities=7% Similarity=0.093 Sum_probs=54.4
Q ss_pred ceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEE--EeCCeecCCCC---CcccCCCCCCCeE
Q psy11489 11 KLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCL--IFAGKIMKDHE---NLSNHNMKDGLTS 78 (433)
Q Consensus 11 ~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrL--If~GkiLkD~~---tLs~~gI~dg~tV 78 (433)
...+|.|+.+++ .|+=+++.+.-+..+|+.|...-.+.....-| -|--|+..|++ +|.++.+.+...|
T Consensus 313 d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaal 386 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAAL 386 (506)
T ss_pred ceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceE
Confidence 457899999876 67767788888999999998777777666555 48888887664 8999999998888
No 188
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=24.96 E-value=3.7e+02 Score=21.73 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=41.9
Q ss_pred EEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE-eCCeecCCCCCcccCCCCCCCeE
Q psy11489 25 NIEIEEDASVTDFKEAVAKKFNALPEQLCLI-FAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 25 ~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI-f~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.++|+++.-...+-+-.+++|++++..--+| -.|--+.-.+|-..+-+|.|+.+
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgsel 73 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSEL 73 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEe
Confidence 4688888878888888899999998766555 45555666678888888899888
No 189
>KOG2660|consensus
Probab=24.68 E-value=49 Score=33.87 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=38.6
Q ss_pred EEEeCCCCcHHHHHHHHHHhhC--CCcCCeEEEeCCeecCCCCCcccC
Q psy11489 25 NIEIEEDASVTDFKEAVAKKFN--ALPEQLCLIFAGKIMKDHENLSNH 70 (433)
Q Consensus 25 ~i~V~~~~TV~~LK~~I~~~~~--ip~~~qrLIf~GkiLkD~~tLs~~ 70 (433)
-|.++...||.+||+-+.++.+ -+..++-++|++..|.|+.||.+.
T Consensus 167 fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i 214 (331)
T KOG2660|consen 167 FLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDI 214 (331)
T ss_pred eEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhh
Confidence 3566778999999999999998 455677899999999999999864
No 190
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=24.39 E-value=2.7e+02 Score=22.51 Aligned_cols=43 Identities=16% Similarity=0.330 Sum_probs=29.5
Q ss_pred eEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE
Q psy11489 12 LITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLI 55 (433)
Q Consensus 12 ~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI 55 (433)
.++|+|.+..-..-|- ....++.+|++.|.+.++++..++.+.
T Consensus 31 ~i~I~I~tarPg~vIG-~~G~~i~~L~~~L~k~~~~~~~~i~v~ 73 (81)
T cd02413 31 RTEIIIRATRTQNVLG-EKGRRIRELTSLVQKRFNFPEGSVELY 73 (81)
T ss_pred eEEEEEEeCCCceEEC-CCchhHHHHHHHHHHHhCCCCCeEEEE
Confidence 3555555543322221 345789999999999999988887763
No 191
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=23.80 E-value=92 Score=25.22 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=17.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHhh
Q psy11489 24 QNIEIEEDASVTDFKEAVAKKF 45 (433)
Q Consensus 24 ~~i~V~~~~TV~~LK~~I~~~~ 45 (433)
+.++|..++|+.++|+.+-+..
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A 23 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEA 23 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHG
T ss_pred eEEEccCcCcHHHHHHHHHHHH
Confidence 4678899999999999996553
No 192
>KOG3751|consensus
Probab=23.75 E-value=1.6e+02 Score=32.33 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=47.7
Q ss_pred EEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCe-EEE------eCCeecCCCC----CcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQL-CLI------FAGKIMKDHE----NLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~q-rLI------f~GkiLkD~~----tLs~~gI~dg~tV 78 (433)
+-|+|-+.++ ...+.|+..+|+.++-+.++++.++.-+.= +|+ +=-|.++|++ .|+...+..+..|
T Consensus 189 lvVKvfseDgasksL~Vder~tardV~~lL~eKnH~~~d~~W~LvEh~P~L~iER~fEDHElVVEvls~W~~dseNK~ 266 (622)
T KOG3751|consen 189 LVVKVFSEDGASKSLLVDERMTARDVCQLLAEKNHCADDEDWCLVEHYPHLQIERVFEDHELVVEVLSMWTQDSENKL 266 (622)
T ss_pred eeEEEEccCCceeeEeecccccHHHHHHHHHHhhhhhcccceeeeeecchhhhhhhhhhHHHHHHHHhhcccCCCcee
Confidence 3344444443 789999999999999999999988766533 443 2346788886 4666777888888
No 193
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=23.36 E-value=2.3e+02 Score=22.96 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=32.5
Q ss_pred EEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEe
Q psy11489 17 VKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIF 56 (433)
Q Consensus 17 VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf 56 (433)
|-.+++ ...+.|.+++||.++-+.+.++.++++.+-.|-.
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrl 44 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRL 44 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEE
Confidence 445554 6788999999999999999999999998665543
No 194
>KOG1364|consensus
Probab=22.94 E-value=77 Score=32.75 Aligned_cols=65 Identities=12% Similarity=0.124 Sum_probs=48.5
Q ss_pred EEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhh-CCCcCCeEEEeCC---eecCCC--CCcccCCCCCCCeE
Q psy11489 14 TIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKF-NALPEQLCLIFAG---KIMKDH--ENLSNHNMKDGLTS 78 (433)
Q Consensus 14 ~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~-~ip~~~qrLIf~G---kiLkD~--~tLs~~gI~dg~tV 78 (433)
.|.||.+++ ++-+.+-.+.+|..|-..+..+. +.+.+..+|+++= |.|.++ .||.++||++-.++
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~~ 350 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSETL 350 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCccccc
Confidence 488999876 34445567888988888777665 6778889999876 555543 49999999987654
No 195
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=22.93 E-value=1.3e+02 Score=24.82 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=31.6
Q ss_pred eEEEEeCCCCcHHHHHHHHHHhhCC-CcCCeEEE--eCCe--ecCCC
Q psy11489 23 KQNIEIEEDASVTDFKEAVAKKFNA-LPEQLCLI--FAGK--IMKDH 64 (433)
Q Consensus 23 ~~~i~V~~~~TV~~LK~~I~~~~~i-p~~~qrLI--f~Gk--iLkD~ 64 (433)
..++-|.+..|+++|=..+++++.| .++...|. -+|. .|.|+
T Consensus 15 ~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd 61 (87)
T cd01776 15 GKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPD 61 (87)
T ss_pred eeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcc
Confidence 4789999999999999999999988 45666654 3343 45544
No 196
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=22.62 E-value=3.6e+02 Score=21.71 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=37.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEe-CCeecCCCCCcccCCCCCCCeE
Q psy11489 24 QNIEIEEDASVTDFKEAVAKKFNALPEQLCLIF-AGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 24 ~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf-~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..++|+++.....+-+..+++|.+++..-.+|- .|--+.-.+|-.+.-+|.|+.+
T Consensus 18 kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseL 73 (76)
T PF03671_consen 18 KVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSEL 73 (76)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEE
T ss_pred eEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEe
Confidence 346898888888888889999999998777764 4545555566666666667666
No 197
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=22.23 E-value=82 Score=21.91 Aligned_cols=37 Identities=16% Similarity=0.314 Sum_probs=27.2
Q ss_pred HHHHHhhhcCCCchhhh-h-hccccCCcchHHHHHhhhcC
Q psy11489 350 SQLDQLTAMGFVNREAN-L-QGSLFGNAGMQSMMQQMMAN 387 (433)
Q Consensus 350 ~QL~qL~~mGf~d~~~N-l-~al~~~~g~~~~a~~~l~~~ 387 (433)
+.+.+|++| |.+-..- | ..+...+++++.+++.|++.
T Consensus 4 ~~v~~L~~m-FP~l~~~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 4 EALHDLKDM-FPNLDEEVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred HHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 467888888 8876443 4 33455889999999998865
No 198
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=22.20 E-value=1.8e+02 Score=24.10 Aligned_cols=40 Identities=10% Similarity=0.201 Sum_probs=32.8
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCe
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQL 52 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~q 52 (433)
+.|.|-.++ .++.|+|..+++..++=+.+.++.++|.+-.
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~ 42 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQ 42 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHH
Confidence 345565555 5899999999999999999999999998744
No 199
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=21.34 E-value=2e+02 Score=23.38 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=34.7
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCe
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGK 59 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~Gk 59 (433)
|+|+....++|..|.+..-...+||..++...||-+.+ |.|..+
T Consensus 1 vRiKfE~~gEKRIi~f~RPvkf~dl~~kv~~afGq~md---l~ytn~ 44 (79)
T cd06405 1 VRIKFEHNGEKRIIQFPRPVKFKDLQQKVTTAFGQPMD---LHYTNN 44 (79)
T ss_pred CeEEEEecCceEEEecCCCccHHHHHHHHHHHhCCeee---EEEecc
Confidence 35566667889999999999999999999999987654 555555
No 200
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=20.77 E-value=2.2e+02 Score=29.02 Aligned_cols=54 Identities=20% Similarity=0.197 Sum_probs=40.7
Q ss_pred EEEeCCCCcHHHHHHHHHHhh--------------C-CCcCCeEEEeCCeecCCCCCccc---CCCCCCCeE
Q psy11489 25 NIEIEEDASVTDFKEAVAKKF--------------N-ALPEQLCLIFAGKIMKDHENLSN---HNMKDGLTS 78 (433)
Q Consensus 25 ~i~V~~~~TV~~LK~~I~~~~--------------~-ip~~~qrLIf~GkiLkD~~tLs~---~gI~dg~tV 78 (433)
.+....-.-|..++..|++++ . .+.+-+.|.++|++|..+-||.. +-.|.+.-|
T Consensus 251 rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di 322 (331)
T PF11816_consen 251 RLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDI 322 (331)
T ss_pred eecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeE
Confidence 344444567999999999998 2 45567899999999998877655 456777766
No 201
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=20.16 E-value=4.8e+02 Score=21.48 Aligned_cols=68 Identities=26% Similarity=0.325 Sum_probs=33.6
Q ss_pred EEEEEEc--CCC--eEEEEeCCCCcHHHHHHH--HHHhh-CCCcCCeEEEeCCeecCCCCCcccCCCCCCCeEecccCcc
Q psy11489 13 ITIVVKT--PKE--KQNIEIEEDASVTDFKEA--VAKKF-NALPEQLCLIFAGKIMKDHENLSNHNMKDGLTSLKQLPLT 85 (433)
Q Consensus 13 i~V~VKt--~~~--~~~i~V~~~~TV~~LK~~--I~~~~-~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV~~~~~~~ 85 (433)
|+|.|-+ +.. .++++|+..+||.+=-+. |.+.| ++..+..++=-=||..+ .++-+++||-|+.-+|++
T Consensus 1 i~VeV~yA~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~~~~p~idl~~~~vGIfGk~~~-----~d~~L~~GDRVEIYRPL~ 75 (84)
T PF03658_consen 1 IRVEVAYALPERQVILTLEVPEGTTVAQAIEASGILEQFPEIDLEKNKVGIFGKLVK-----LDTVLRDGDRVEIYRPLT 75 (84)
T ss_dssp EEEEEEEEETTCEEEEEEEEETT-BHHHHHHHHTHHHH-TT--TTTSEEEEEE-S-------TT-B--TT-EEEEE-S--
T ss_pred CEEEEEEECCCeEEEEEEECCCcCcHHHHHHHcCchhhCcccCcccceeeeeeeEcC-----CCCcCCCCCEEEEeccCc
Confidence 4555554 443 478899999999875543 23333 66667777643355555 345678999995555443
Done!