Query psy11489
Match_columns 433
No_of_seqs 335 out of 1562
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 19:43:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqy_A HHR23A, UV excision rep 99.8 1.8E-17 6E-22 168.3 19.3 69 10-78 5-77 (368)
2 3plu_A Ubiquitin-like modifier 99.7 4.1E-18 1.4E-22 140.2 10.5 71 8-78 17-88 (93)
3 4dwf_A HLA-B-associated transc 99.7 7.3E-18 2.5E-22 137.4 10.3 69 9-78 2-71 (90)
4 2daf_A FLJ35834 protein; hypot 99.7 5.6E-18 1.9E-22 144.7 9.8 71 8-78 11-83 (118)
5 1uh6_A Ubiquitin-like 5; beta- 99.7 6.1E-18 2.1E-22 141.5 8.8 72 7-78 23-95 (100)
6 1wx7_A Ubiquilin 3; ubiquitin- 99.7 3.8E-17 1.3E-21 137.7 11.1 69 10-78 15-83 (106)
7 3phx_B Ubiquitin-like protein 99.7 4.4E-17 1.5E-21 129.5 10.6 68 11-78 3-71 (79)
8 3v6c_B Ubiquitin; structural g 99.7 5E-17 1.7E-21 133.0 10.8 70 9-78 14-84 (91)
9 3m62_B UV excision repair prot 99.7 2E-17 6.7E-22 139.8 8.5 66 13-78 2-68 (106)
10 4eew_A Large proline-rich prot 99.7 6.7E-17 2.3E-21 131.1 9.8 69 9-78 14-83 (88)
11 1wgg_A Ubiquitin carboxyl-term 99.7 1.2E-16 4E-21 132.7 10.3 69 9-78 4-73 (96)
12 1yqb_A Ubiquilin 3; structural 99.7 1.2E-16 4.1E-21 133.6 10.3 70 9-78 19-88 (100)
13 3dbh_I NEDD8; cell cycle, acti 99.7 1.3E-16 4.4E-21 128.9 10.1 72 7-78 7-79 (88)
14 2wyq_A HHR23A, UV excision rep 99.7 1.5E-16 5.2E-21 127.8 10.4 69 10-78 3-75 (85)
15 2bwf_A Ubiquitin-like protein 99.7 1.6E-16 5.3E-21 125.1 10.2 66 13-78 5-70 (77)
16 1wgd_A Homocysteine-responsive 99.7 7.6E-17 2.6E-21 132.5 8.7 69 10-78 5-80 (93)
17 1wx8_A Riken cDNA 4931431F19; 99.7 7.5E-17 2.6E-21 133.1 8.6 70 9-78 14-83 (96)
18 2klc_A Ubiquilin-1; ubiquitin- 99.7 2E-16 6.7E-21 132.5 11.2 70 9-78 22-91 (101)
19 2kan_A Uncharacterized protein 99.7 1.2E-16 4.2E-21 132.0 9.8 70 9-78 12-82 (94)
20 1j8c_A Ubiquitin-like protein 99.7 2.1E-16 7.3E-21 137.4 11.4 69 10-78 30-98 (125)
21 1uel_A HHR23B, UV excision rep 99.7 2.4E-16 8.1E-21 130.2 10.8 66 13-78 1-70 (95)
22 1wxv_A BAG-family molecular ch 99.7 1.9E-16 6.4E-21 129.8 9.8 70 9-78 4-79 (92)
23 4a20_A Ubiquitin-like protein 99.7 1.5E-16 5.1E-21 132.8 9.3 70 9-78 16-90 (98)
24 4fbj_B NEDD8; effector-HOST ta 99.7 1.8E-16 6.3E-21 129.1 9.6 66 13-78 1-67 (88)
25 4hcn_B Polyubiquitin, ubiquiti 99.7 1.4E-16 4.6E-21 132.4 9.0 70 9-78 19-89 (98)
26 2dzi_A Ubiquitin-like protein 99.7 2.1E-16 7E-21 125.6 9.6 71 8-78 3-74 (81)
27 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 2E-16 6.7E-21 127.8 9.2 70 9-78 4-74 (87)
28 1wju_A NEDD8 ultimate buster-1 99.7 2.1E-16 7.1E-21 132.2 9.3 68 11-78 14-86 (100)
29 1wia_A Hypothetical ubiquitin- 99.7 4E-16 1.4E-20 128.6 10.9 67 9-78 4-72 (95)
30 2kk8_A Uncharacterized protein 99.7 2.2E-16 7.4E-21 127.9 8.7 68 11-78 9-78 (84)
31 1v5o_A 1700011N24RIK protein; 99.7 2.7E-16 9.3E-21 131.7 9.6 69 10-78 5-79 (102)
32 3n3k_B Ubiquitin; hydrolase, p 99.7 2.8E-16 9.6E-21 125.9 9.2 68 11-78 2-70 (85)
33 3mtn_B UBA80, ubcep1, ubiquiti 99.7 4.1E-16 1.4E-20 124.8 10.1 68 11-78 2-70 (85)
34 1v2y_A 3300001G02RIK protein; 99.7 1.5E-16 5E-21 134.4 7.7 71 8-78 3-90 (105)
35 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 4.2E-16 1.4E-20 128.2 10.0 66 13-78 2-68 (96)
36 2faz_A Ubiquitin-like containi 99.6 6.3E-16 2.2E-20 122.3 10.6 67 12-78 2-71 (78)
37 1wy8_A NP95-like ring finger p 99.6 5.9E-16 2E-20 125.6 10.5 70 9-78 4-76 (89)
38 1ndd_A NEDD8, protein (ubiquit 99.6 5.7E-16 2E-20 121.1 9.9 66 13-78 1-67 (76)
39 1v86_A DNA segment, CHR 7, way 99.6 2.4E-16 8.1E-21 130.5 7.5 70 8-78 13-82 (95)
40 1v5t_A 8430435I17RIK protein; 99.6 2.9E-16 9.8E-21 128.6 7.4 70 9-78 4-77 (90)
41 2lxa_A Ubiquitin-like protein 99.6 1.6E-16 5.6E-21 129.7 5.8 66 13-78 2-72 (87)
42 1ttn_A DC-UBP, dendritic cell- 99.6 5.4E-16 1.9E-20 130.7 9.2 69 10-78 21-90 (106)
43 3a9j_A Ubiquitin; protein comp 99.6 9.2E-16 3.1E-20 119.9 9.8 66 13-78 1-67 (76)
44 1x1m_A Ubiquitin-like protein 99.6 5.4E-16 1.8E-20 131.0 9.1 71 8-78 8-94 (107)
45 2uyz_B Small ubiquitin-related 99.6 5.2E-16 1.8E-20 123.2 8.2 68 11-78 2-70 (79)
46 2hj8_A Interferon-induced 17 k 99.6 5.1E-16 1.8E-20 126.4 8.3 67 12-78 4-71 (88)
47 3m63_B Ubiquitin domain-contai 99.6 1.8E-16 6.2E-21 132.8 5.6 69 10-78 26-94 (101)
48 2l7r_A Ubiquitin-like protein 99.6 5.1E-16 1.8E-20 127.9 7.9 68 10-78 17-84 (93)
49 2kdb_A Homocysteine-responsive 99.6 4.4E-16 1.5E-20 130.1 7.1 70 9-78 20-96 (99)
50 1wyw_B Ubiquitin-like protein 99.6 8.6E-16 3E-20 127.5 8.8 69 10-78 19-88 (97)
51 1sif_A Ubiquitin; hydrophobic 99.6 2E-15 6.9E-20 122.9 9.4 67 12-78 9-76 (88)
52 3vdz_A Ubiquitin-40S ribosomal 99.6 2.8E-15 9.7E-20 127.5 10.4 68 11-78 34-102 (111)
53 1wgh_A Ubiquitin-like 3, HCG-1 99.6 4.3E-15 1.5E-19 127.5 11.1 69 10-78 14-93 (116)
54 1we6_A Splicing factor, putati 99.6 3E-15 1E-19 127.1 9.9 69 10-78 25-98 (111)
55 2kd0_A LRR repeats and ubiquit 99.6 3.6E-15 1.2E-19 120.8 9.8 68 11-78 11-78 (85)
56 1yx5_B Ubiquitin; proteasome, 99.6 6E-15 2E-19 122.2 10.2 66 13-78 1-67 (98)
57 2fnj_B Transcription elongatio 99.6 2.4E-15 8.1E-20 129.2 7.6 66 13-78 3-75 (118)
58 4ajy_B Transcription elongatio 99.6 4.9E-15 1.7E-19 127.0 9.1 66 13-78 3-75 (118)
59 2gow_A HCG-1 protein, ubiquiti 99.6 6.4E-15 2.2E-19 128.1 9.9 69 10-78 15-94 (125)
60 2ojr_A Ubiquitin; lanthide-bin 99.6 1.5E-14 5.1E-19 122.9 11.2 68 11-78 34-102 (111)
61 3b1l_X E3 ubiquitin-protein li 99.3 2.3E-16 8E-21 124.0 0.0 66 13-78 1-67 (76)
62 4dbg_A Ranbp-type and C3HC4-ty 99.6 1.1E-14 3.8E-19 122.7 10.0 67 12-78 24-94 (105)
63 3rt3_B Ubiquitin-like protein 99.5 3E-14 1E-18 127.6 10.8 69 10-78 79-148 (159)
64 1we7_A SF3A1 protein; structur 99.5 2.6E-14 8.9E-19 122.1 9.3 69 10-78 23-102 (115)
65 2kdi_A Ubiquitin, vacuolar pro 99.5 3.4E-14 1.2E-18 121.4 10.0 67 12-78 9-76 (114)
66 3l0w_B Monoubiquitinated proli 99.5 2.8E-14 9.4E-19 130.2 10.0 66 13-78 1-67 (169)
67 4b6w_A Tubulin-specific chaper 99.5 2.2E-14 7.6E-19 116.8 8.3 67 12-78 2-78 (86)
68 1se9_A Ubiquitin family; ubiqu 99.5 3E-14 1E-18 123.7 9.0 66 10-75 14-88 (126)
69 3u30_A Ubiquitin, linear DI-ub 99.5 4.4E-14 1.5E-18 128.5 10.5 70 9-78 17-87 (172)
70 1wf9_A NPL4 family protein; be 99.5 5E-14 1.7E-18 119.0 9.1 69 10-78 5-89 (107)
71 2kj6_A Tubulin folding cofacto 99.5 5.2E-14 1.8E-18 117.1 8.3 70 9-78 11-90 (97)
72 2kjr_A CG11242; UBL, ubiquitin 99.5 6.7E-14 2.3E-18 116.0 8.9 70 9-78 12-90 (95)
73 1v6e_A Cytoskeleton-associated 99.5 9.4E-14 3.2E-18 114.7 9.8 69 10-78 5-82 (95)
74 3u5e_m 60S ribosomal protein L 99.5 2.1E-15 7E-20 131.4 -0.3 79 13-91 1-80 (128)
75 3q3f_A Ribonuclease/ubiquitin 99.5 6E-14 2.1E-18 130.1 9.3 67 12-78 105-172 (189)
76 3rt3_B Ubiquitin-like protein 99.5 9.5E-14 3.2E-18 124.4 9.5 66 13-78 3-71 (159)
77 2dzm_A FAS-associated factor 1 99.5 5.8E-14 2E-18 117.5 7.1 67 11-78 8-76 (100)
78 2dzj_A Synaptic glycoprotein S 99.5 1.5E-13 5E-18 112.3 8.4 67 12-78 10-83 (88)
79 3b08_A Polyubiquitin-C, ubiqui 99.4 2.2E-13 7.4E-18 120.2 9.8 66 13-78 1-67 (152)
80 3b08_A Polyubiquitin-C, ubiqui 99.4 3.4E-13 1.2E-17 118.9 10.3 67 12-78 76-143 (152)
81 3u30_A Ubiquitin, linear DI-ub 99.4 2.3E-13 8E-18 123.7 9.1 67 12-78 96-163 (172)
82 3shq_A UBLCP1; phosphatase, hy 99.4 3.9E-13 1.3E-17 134.2 8.5 69 10-78 3-74 (320)
83 3u5c_f 40S ribosomal protein S 99.4 2.7E-14 9.3E-19 128.1 0.0 72 13-84 1-73 (152)
84 1t0y_A Tubulin folding cofacto 99.4 9.8E-13 3.4E-17 113.6 9.8 68 11-78 5-81 (122)
85 3ai5_A Yeast enhanced green fl 99.4 1E-12 3.5E-17 130.1 10.5 70 9-78 230-300 (307)
86 2kzr_A Ubiquitin thioesterase 99.3 1.9E-12 6.7E-17 104.8 7.5 66 13-78 1-72 (86)
87 2io1_B Small ubiquitin-related 99.3 9E-12 3.1E-16 103.0 10.2 69 10-78 5-74 (94)
88 2io0_B Small ubiquitin-related 99.2 6.7E-11 2.3E-15 97.2 10.5 69 10-78 3-72 (91)
89 1wm3_A Ubiquitin-like protein 99.2 7.8E-11 2.7E-15 92.3 9.6 66 13-78 2-68 (72)
90 3a4r_A Nfatc2-interacting prot 99.2 9.2E-11 3.2E-15 93.7 9.6 70 9-78 4-75 (79)
91 2xzm_9 RPS31E; ribosome, trans 99.2 2.2E-12 7.6E-17 119.2 0.0 73 13-90 1-74 (189)
92 2d07_B Ubiquitin-like protein 99.2 1.2E-10 4.2E-15 95.9 10.4 69 10-78 15-84 (93)
93 2eke_C Ubiquitin-like protein 99.2 1.7E-10 6E-15 97.3 10.8 71 8-78 27-97 (106)
94 1wz0_A Ubiquitin-like protein 99.1 2E-10 6.8E-15 96.6 10.3 69 10-78 22-91 (104)
95 2k8h_A Small ubiquitin protein 99.1 1.4E-10 4.7E-15 98.5 7.4 69 10-78 24-93 (110)
96 1wjn_A Tubulin-folding protein 99.1 4.8E-10 1.6E-14 92.6 9.0 69 10-78 7-87 (97)
97 2dna_A Unnamed protein product 99.1 6.2E-11 2.1E-15 91.5 3.1 51 339-389 10-60 (67)
98 2cp8_A NEXT to BRCA1 gene 1 pr 98.9 4.4E-10 1.5E-14 82.9 3.4 45 342-386 3-47 (54)
99 1wr1_B Ubiquitin-like protein 98.9 4.4E-10 1.5E-14 84.6 2.4 50 339-388 8-57 (58)
100 3kyd_D Small ubiquitin-related 98.9 1.2E-08 4.2E-13 87.0 10.5 69 10-78 38-107 (115)
101 2bwb_A Ubiquitin-like protein 98.8 1.5E-09 5E-14 78.0 2.7 45 343-387 2-46 (46)
102 2jy5_A Ubiquilin-1; UBA, alter 98.8 2.6E-09 8.9E-14 78.7 3.3 50 339-388 3-52 (52)
103 1vej_A Riken cDNA 4931431F19; 98.8 3E-09 1E-13 83.8 3.0 50 339-388 20-69 (74)
104 2dah_A Ubiquilin-3; UBA domain 98.7 1.6E-09 5.6E-14 80.4 1.1 48 342-389 3-50 (54)
105 2knz_A Ubiquilin-4; cytoplasm, 98.7 1E-08 3.5E-13 75.8 3.3 49 340-388 3-51 (53)
106 3tix_A Ubiquitin-like protein 98.6 6.6E-08 2.3E-12 89.0 8.4 69 10-78 55-123 (207)
107 3pge_A SUMO-modified prolifera 98.6 1.2E-07 4E-12 88.4 10.0 69 10-78 27-95 (200)
108 2pjh_A Protein NPL4, nuclear p 98.5 8.2E-08 2.8E-12 76.8 4.9 67 12-78 4-75 (80)
109 2cwb_A Chimera of immunoglobul 98.5 2.8E-08 9.6E-13 83.7 1.8 50 339-388 57-106 (108)
110 3goe_A DNA repair protein RAD6 98.4 2E-06 7E-11 67.8 10.0 68 11-78 8-77 (82)
111 2jxx_A Nfatc2-interacting prot 98.3 1.6E-06 5.6E-11 71.8 8.2 71 8-78 21-93 (97)
112 3v7o_A Minor nucleoprotein VP3 98.2 2.2E-07 7.5E-12 86.6 0.0 69 10-78 19-87 (227)
113 2l76_A Nfatc2-interacting prot 98.1 9.4E-06 3.2E-10 66.6 8.7 70 9-78 18-87 (95)
114 3uf8_A Ubiquitin-like protein 98.0 1.4E-05 4.7E-10 74.9 9.5 74 9-82 18-91 (209)
115 2bps_A YUKD protein; ubiquitin 98.0 1.5E-05 5.2E-10 63.7 7.1 68 11-78 3-78 (81)
116 4efo_A Serine/threonine-protei 98.0 1.2E-05 4E-10 66.1 6.4 41 22-62 24-64 (94)
117 3ix6_A TS, tsase, thymidylate 97.9 2E-06 6.9E-11 86.5 0.0 69 10-78 19-87 (360)
118 4da1_A Protein phosphatase 1K, 97.6 7.5E-06 2.5E-10 83.3 0.0 69 10-78 28-96 (389)
119 2qsf_X RAD23, UV excision repa 97.2 0.00018 6E-09 65.3 3.1 46 340-388 124-169 (171)
120 2kc2_A Talin-1, F1; FERM, adhe 97.2 0.00053 1.8E-08 59.4 6.0 65 14-78 13-117 (128)
121 2al3_A TUG long isoform; TUG U 97.1 0.0013 4.3E-08 53.5 7.2 67 12-78 9-76 (90)
122 2dzk_A UBX domain-containing p 96.8 0.011 3.7E-07 49.5 11.1 69 10-78 11-85 (109)
123 1ify_A HHR23A, UV excision rep 96.6 0.0011 3.9E-08 47.7 2.8 41 346-387 6-46 (49)
124 3qx1_A FAS-associated factor 1 96.5 0.018 6.1E-07 45.7 9.7 68 10-78 5-78 (84)
125 4e71_A Plexin-B2, MM1; transme 96.5 0.013 4.3E-07 49.4 8.8 70 9-78 8-105 (111)
126 1wj4_A KIAA0794 protein; UBX d 96.2 0.024 8.2E-07 48.6 9.3 68 10-78 41-114 (124)
127 2r2o_A Plexin-B1; effector dom 96.1 0.022 7.4E-07 49.6 8.8 70 9-78 21-123 (138)
128 1vg5_A RSGI RUH-014, rhomboid 95.9 0.0072 2.5E-07 47.2 4.4 41 346-387 27-67 (73)
129 2lnm_A Protein TIC 40, chlorop 95.9 0.015 5E-07 43.8 5.8 24 172-195 3-27 (62)
130 2ekk_A UBA domain from E3 ubiq 95.7 0.0038 1.3E-07 44.3 1.6 40 347-388 8-47 (47)
131 2g3q_A Protein YBL047C; endocy 95.5 0.0059 2E-07 42.4 2.2 37 350-387 6-42 (43)
132 1ryj_A Unknown; beta/alpha pro 95.5 0.095 3.2E-06 40.0 9.1 58 12-78 4-61 (70)
133 3h6n_A Plexin-D1; structural g 95.4 0.13 4.5E-06 44.1 10.5 67 12-78 4-99 (127)
134 1oey_A P67-PHOX, neutrophil cy 95.4 0.043 1.5E-06 43.8 7.0 49 10-59 3-51 (83)
135 2dak_A Ubiquitin carboxyl-term 95.3 0.0054 1.8E-07 46.4 1.5 40 348-388 9-48 (63)
136 2cr5_A Reproduction 8; UBX dom 95.3 0.12 4.1E-06 43.0 9.8 68 10-78 21-93 (109)
137 4e74_A Plexin-A4; RBD, structu 95.2 0.077 2.6E-06 45.0 8.4 70 9-78 10-109 (117)
138 1z96_A DNA-damage, UBA-domain 95.1 0.012 4.2E-07 39.8 2.6 37 348-385 4-40 (40)
139 1s3s_G P47 protein; AAA ATPase 95.0 0.038 1.3E-06 47.4 6.1 69 10-78 50-123 (127)
140 1wiv_A UBP14, ubiquitin-specif 94.9 0.011 3.8E-07 46.1 2.2 38 350-388 31-68 (73)
141 1wji_A Tudor domain containing 94.6 0.012 4.3E-07 44.5 1.8 37 350-387 11-47 (63)
142 2llw_A Heat shock protein STI1 94.5 0.0081 2.8E-07 46.7 0.5 24 172-195 11-35 (71)
143 1veg_A NEDD8 ultimate buster-1 94.4 0.012 4.1E-07 47.1 1.4 40 348-388 29-68 (83)
144 2cpw_A CBL-interacting protein 94.2 0.02 6.8E-07 43.5 2.1 38 350-388 21-59 (64)
145 2lnm_A Protein TIC 40, chlorop 94.2 0.012 4.2E-07 44.3 0.9 37 215-251 8-44 (62)
146 2llw_A Heat shock protein STI1 94.1 0.047 1.6E-06 42.3 4.1 41 378-419 10-50 (71)
147 3jyu_A Ubiquitin carboxyl-term 94.0 0.21 7.2E-06 47.0 9.3 55 24-78 154-215 (231)
148 2daj_A KIAA0977 protein, COBL- 93.9 0.13 4.6E-06 41.0 6.3 65 10-74 8-76 (91)
149 3ivf_A Talin-1; FERM domain, c 93.7 0.22 7.5E-06 49.7 9.3 66 13-78 4-79 (371)
150 3kuz_A Plexin-C1; structural g 93.6 0.4 1.4E-05 41.0 9.3 70 9-78 16-121 (126)
151 2l32_A Small archaeal modifier 93.4 0.27 9.2E-06 38.1 7.3 56 13-78 1-57 (74)
152 1vjk_A Molybdopterin convertin 93.3 0.55 1.9E-05 37.9 9.5 62 12-78 9-89 (98)
153 4a3p_A Ubiquitin carboxyl-term 93.1 0.27 9.3E-06 45.7 8.3 55 24-78 142-203 (217)
154 3hm6_X Plexin-B1; structural g 93.0 0.49 1.7E-05 50.5 10.8 70 9-78 254-356 (644)
155 1vd2_A Protein kinase C, IOTA 93.0 0.44 1.5E-05 38.4 8.2 50 10-59 4-54 (89)
156 2dag_A Ubiquitin carboxyl-term 92.7 0.031 1.1E-06 43.6 1.0 37 350-387 11-48 (74)
157 2dai_A Ubadc1, ubiquitin assoc 92.6 0.048 1.6E-06 43.5 2.0 40 347-387 28-67 (83)
158 3rpf_C Molybdopterin convertin 92.3 0.36 1.2E-05 36.9 6.7 61 13-78 1-65 (74)
159 2dkl_A Trinucleotide repeat co 92.3 0.11 3.6E-06 41.7 3.7 45 343-388 15-60 (85)
160 3ig3_A Plxna3 protein; plexin 92.1 0.85 2.9E-05 48.6 11.3 70 9-78 230-329 (627)
161 3po0_A Small archaeal modifier 91.5 1.1 3.9E-05 35.1 9.0 52 22-78 18-80 (89)
162 1whc_A RSGI RUH-027, UBA/UBX 3 90.7 0.056 1.9E-06 40.9 0.4 37 350-387 11-48 (64)
163 2crn_A Ubash3A protein; compac 90.6 0.077 2.6E-06 40.2 1.1 37 350-387 11-48 (64)
164 1wgn_A UBAP1, ubiquitin associ 90.5 0.035 1.2E-06 41.6 -0.8 39 350-389 21-59 (63)
165 1ip9_A BEM1 protein; ubiquitin 90.4 1.1 3.9E-05 35.6 7.8 46 11-58 11-57 (85)
166 2llv_A Heat shock protein STI1 90.1 0.095 3.2E-06 40.4 1.3 48 171-234 13-62 (71)
167 2qsf_X RAD23, UV excision repa 89.8 0.07 2.4E-06 48.2 0.4 24 396-419 31-54 (171)
168 1vek_A UBP14, ubiquitin-specif 89.4 0.11 3.7E-06 41.5 1.2 39 348-387 29-68 (84)
169 2lbc_A Ubiquitin carboxyl-term 87.9 0.18 6.2E-06 42.9 1.7 39 349-388 79-117 (126)
170 1q02_A Sequestosome 1; helical 87.4 0.41 1.4E-05 34.6 3.0 41 344-384 6-47 (52)
171 1pve_A HHR23B, UV excision rep 86.8 0.055 1.9E-06 42.0 -2.0 27 187-219 24-51 (72)
172 2f4m_B UV excision repair prot 86.8 0.086 2.9E-06 39.6 -0.9 27 187-219 22-49 (61)
173 1fm0_D Molybdopterin convertin 86.3 1.7 5.8E-05 33.3 6.4 50 23-78 18-72 (81)
174 2llv_A Heat shock protein STI1 86.2 0.099 3.4E-06 40.4 -0.9 41 209-249 12-54 (71)
175 2kvr_A Ubiquitin carboxyl-term 85.0 0.75 2.6E-05 39.5 4.0 33 25-57 59-91 (130)
176 1dv0_A DNA repair protein HHR2 84.8 0.43 1.5E-05 33.7 2.0 38 350-388 6-43 (47)
177 2q5w_D Molybdopterin convertin 84.6 1.4 4.7E-05 33.5 5.0 50 23-78 17-68 (77)
178 2c7h_A RBBP6, retinoblastoma-b 84.6 4.1 0.00014 32.5 7.9 43 12-54 8-51 (86)
179 1tyg_B YJBS; alpha beta barrel 83.4 1.8 6.3E-05 34.5 5.4 48 26-78 30-78 (87)
180 2qjl_A URM1, ubiquitin-related 82.7 5.9 0.0002 31.8 8.3 33 13-45 2-45 (99)
181 1wgy_A RAP guanine nucleotide 82.7 6 0.00021 32.6 8.4 69 10-78 7-81 (104)
182 2g1e_A Hypothetical protein TA 82.2 5.3 0.00018 31.0 7.7 54 24-78 17-81 (90)
183 1rws_A Hypothetical protein PF 81.6 0.38 1.3E-05 37.3 0.7 46 24-78 23-68 (77)
184 2l52_A Methanosarcina acetivor 81.5 3.2 0.00011 33.4 6.4 65 12-78 3-90 (99)
185 2hj1_A Hypothetical protein; s 81.1 5.4 0.00019 32.4 7.5 68 10-82 10-84 (97)
186 2juo_A GA-binding protein alph 81.1 3.1 0.00011 33.1 5.7 55 24-78 5-59 (89)
187 3dwg_C 9.5 kDa culture filtrat 80.9 5.7 0.00019 31.3 7.6 64 13-78 1-84 (93)
188 1wgk_A Riken cDNA 2900073H19 p 78.2 9.8 0.00034 31.6 8.5 66 11-78 10-99 (114)
189 1oqy_A HHR23A, UV excision rep 78.0 7.1 0.00024 39.2 8.8 38 350-388 327-364 (368)
190 1wgr_A Growth factor receptor- 77.8 4 0.00014 33.5 5.7 68 11-78 8-87 (100)
191 1h4r_A Merlin; FERM, neurofibr 77.8 9.2 0.00032 36.7 9.4 69 10-78 20-93 (314)
192 4eut_A Serine/threonine-protei 77.6 6.5 0.00022 38.6 8.5 44 22-65 322-366 (396)
193 2i1j_A Moesin; FERM, coiled-co 77.0 8.7 0.0003 40.7 9.6 69 10-78 2-76 (575)
194 1ef1_A Moesin; membrane, FERM 76.7 9.4 0.00032 36.2 9.1 66 13-78 2-73 (294)
195 2k9x_A Tburm1, uncharacterized 73.6 0.75 2.6E-05 38.4 0.3 64 13-78 5-93 (110)
196 4ae4_A Ubiquitin-associated pr 71.3 2.1 7E-05 36.2 2.5 38 348-386 76-113 (118)
197 2cu3_A Unknown function protei 71.0 7.9 0.00027 28.4 5.4 46 27-78 10-55 (64)
198 2kl0_A Putative thiamin biosyn 70.5 5.1 0.00017 30.6 4.4 44 30-78 13-56 (73)
199 1f0z_A THis protein; ubiquitin 70.3 5.2 0.00018 29.6 4.3 48 26-78 10-57 (66)
200 2cos_A Serine/threonine protei 70.1 1.6 5.3E-05 31.8 1.2 36 350-386 11-47 (54)
201 2k5p_A THis protein, thiamine- 69.6 4.6 0.00016 31.3 4.0 48 26-78 10-60 (78)
202 1pve_A HHR23B, UV excision rep 68.8 0.65 2.2E-05 36.0 -1.1 23 372-394 10-32 (72)
203 1q1o_A Cell division control p 68.2 6.3 0.00022 32.2 4.7 46 13-58 6-64 (98)
204 2kmc_A Fermitin family homolog 68.1 42 0.0015 27.3 9.4 67 12-78 19-94 (102)
205 2ooa_A E3 ubiquitin-protein li 65.4 3.2 0.00011 30.0 2.1 36 350-386 13-48 (52)
206 4gdk_A Ubiquitin-like protein 65.1 13 0.00043 29.8 5.8 67 10-78 3-80 (91)
207 2ns5_A Partitioning-defective 64.9 33 0.0011 27.1 8.1 66 12-78 2-77 (85)
208 3ivf_A Talin-1; FERM domain, c 64.8 31 0.0011 33.9 10.0 69 10-78 83-162 (371)
209 2ylm_A Ubiquitin carboxyl-term 64.2 12 0.00042 39.1 7.2 61 10-70 337-408 (530)
210 2eel_A Cell death activator CI 64.1 25 0.00085 28.2 7.3 61 10-78 9-73 (91)
211 3k9o_A Ubiquitin-conjugating e 63.8 3.4 0.00012 37.7 2.5 40 347-387 162-201 (201)
212 3r8s_T 50S ribosomal protein L 62.5 14 0.00048 29.8 5.6 41 22-62 28-69 (93)
213 2dhz_A RAP guanine nucleotide 61.6 17 0.00058 30.7 6.2 56 10-65 7-74 (120)
214 2kmm_A Guanosine-3',5'-BIS(dip 61.6 20 0.00068 26.4 6.2 58 13-78 1-58 (73)
215 2ylm_A Ubiquitin carboxyl-term 61.2 6 0.0002 41.5 4.2 31 25-55 39-69 (530)
216 1wz3_A Autophagy 12B, ATG12B, 59.0 11 0.00038 30.5 4.5 65 1-69 3-74 (96)
217 3qij_A Protein 4.1; cytoskelet 58.6 22 0.00075 34.0 7.4 73 6-78 11-90 (296)
218 2inc_C TOUB protein; DIIRON, 4 58.2 66 0.0023 25.3 8.9 65 14-78 3-77 (83)
219 4ae4_A Ubiquitin-associated pr 57.5 9 0.00031 32.2 3.8 38 349-387 9-46 (118)
220 1y8x_B Ubiquitin-activating en 57.5 19 0.00065 29.2 5.7 56 23-78 6-79 (98)
221 3qa8_A MGC80376 protein; kinas 57.0 10 0.00034 41.1 5.1 49 22-70 322-371 (676)
222 3ge3_C Toluene-4-monooxygenase 56.3 72 0.0025 25.1 8.8 66 13-78 4-78 (84)
223 2f4m_B UV excision repair prot 55.8 8.3 0.00028 28.7 2.9 22 396-417 9-30 (61)
224 1f2r_I Inhibitor of caspase-ac 55.5 40 0.0014 27.5 7.2 39 33-71 38-80 (100)
225 3onh_A Ubiquitin-activating en 54.0 27 0.00091 29.8 6.2 47 31-78 19-74 (127)
226 2lgx_A Fermitin family homolog 52.5 14 0.00049 30.6 4.1 67 12-78 26-97 (112)
227 3tve_T 50S ribosomal protein L 52.3 23 0.00078 28.4 5.3 40 22-61 22-62 (92)
228 2zjd_A Microtubule-associated 51.4 35 0.0012 29.1 6.6 60 10-69 33-102 (130)
229 2d9s_A CBL E3 ubiquitin protei 50.9 11 0.00038 27.3 2.8 36 350-386 11-46 (53)
230 2lbc_A Ubiquitin carboxyl-term 50.8 6 0.0002 33.3 1.7 37 350-387 5-42 (126)
231 3w1s_C Ubiquitin-like protein 50.4 35 0.0012 27.2 6.1 59 9-69 5-69 (91)
232 2dhy_A CUE domain-containing p 47.9 12 0.00042 28.3 2.8 40 346-386 16-57 (67)
233 3hvz_A Uncharacterized protein 46.2 50 0.0017 25.4 6.2 57 14-78 7-63 (78)
234 1wmh_B Partitioning defective- 46.2 48 0.0016 26.3 6.2 49 10-58 4-54 (86)
235 1pqs_A Cell division control p 45.9 15 0.00052 28.5 3.1 37 22-58 2-43 (77)
236 4gmv_A RAS-associated and plec 45.7 33 0.0011 33.0 6.3 59 11-69 30-96 (281)
237 1v8c_A MOAD related protein; r 45.2 42 0.0014 29.6 6.4 53 24-78 16-78 (168)
238 3e46_A Ubiquitin-conjugating e 43.9 11 0.00038 35.7 2.6 40 347-387 214-253 (253)
239 2zjr_Q 50S ribosomal protein L 42.9 22 0.00075 28.7 3.8 40 22-61 23-63 (95)
240 1wgl_A TOLL-interacting protei 40.7 16 0.00056 26.8 2.5 38 348-386 9-48 (59)
241 3h9d_A ATG8, microtubule-assoc 38.2 70 0.0024 26.7 6.3 60 10-69 29-96 (119)
242 1wj7_A Hypothetical protein (R 37.6 14 0.00048 30.4 1.8 41 347-388 38-79 (104)
243 2cu1_A Mitogen-activated prote 36.3 71 0.0024 26.1 5.8 43 12-57 8-50 (103)
244 2v1y_A Phosphatidylinositol-4, 35.6 68 0.0023 26.5 5.7 35 10-44 17-52 (108)
245 2juj_A E3 ubiquitin-protein li 34.7 19 0.00064 26.3 1.9 36 350-386 9-44 (56)
246 1j0g_A Hypothetical protein 18 34.7 1.2E+02 0.0041 23.8 6.6 55 24-78 26-81 (92)
247 3tca_A Amyloid beta A4 precurs 32.8 96 0.0033 28.6 7.2 54 13-66 35-96 (291)
248 3m95_A Autophagy related prote 31.9 91 0.0031 26.3 6.1 60 10-69 34-101 (125)
249 1zoq_C CREB-binding protein, i 31.7 27 0.00093 24.3 2.2 21 399-419 18-38 (47)
250 3hk0_A Growth factor receptor- 31.5 53 0.0018 31.1 5.1 58 10-68 8-72 (256)
251 1vq8_S 50S ribosomal protein L 30.2 71 0.0024 25.1 4.8 33 22-54 23-55 (85)
252 3au4_A Myosin-X; protein-prote 29.9 84 0.0029 32.6 6.8 47 10-56 214-263 (555)
253 2r2q_A Gamma-aminobutyric acid 28.9 1.1E+02 0.0038 24.9 6.0 61 10-70 25-93 (110)
254 1eo6_A GATE-16, golgi-associat 27.3 1.2E+02 0.0042 25.0 6.1 61 10-70 26-94 (117)
255 3rui_B Autophagy-related prote 27.1 1.4E+02 0.0049 24.7 6.5 60 10-69 28-95 (118)
256 4dbg_B Ring finger protein 31; 27.0 37 0.0013 30.0 2.8 34 350-383 104-137 (162)
257 3j21_T 50S ribosomal protein L 26.0 93 0.0032 24.5 4.8 34 22-55 24-57 (86)
258 2zkr_s 60S ribosomal protein L 25.0 90 0.0031 27.4 5.0 37 22-58 94-131 (156)
259 3u52_E Phenol hydroxylase comp 23.8 3.2E+02 0.011 22.8 8.0 67 12-78 23-104 (119)
260 2bkf_A Zinc-finger protein NBR 23.8 2.4E+02 0.0082 22.3 6.7 44 12-57 6-51 (87)
261 2jrh_A Mitogen-activated prote 22.3 1.5E+02 0.0052 23.6 5.3 44 13-59 5-48 (94)
262 2c60_A Human mitogen-activated 20.8 1.7E+02 0.006 23.9 5.5 45 12-59 31-75 (111)
263 1d4b_A CIDE B, human cell deat 20.3 50 0.0017 27.9 2.2 38 33-71 55-94 (122)
No 1
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.76 E-value=1.8e-17 Score=168.30 Aligned_cols=69 Identities=25% Similarity=0.316 Sum_probs=63.5
Q ss_pred CceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHH---hhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAK---KFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~---~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+..|+|+||+.+ ++|+|+|++++||.+||++|++ +.++++++|||||+||+|+|+++|++|+|++|++|
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstI 77 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFV 77 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCE
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEE
Confidence 456999999974 5799999999999999999999 56799999999999999999999999999999987
No 2
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.75 E-value=4.1e-18 Score=140.23 Aligned_cols=71 Identities=24% Similarity=0.412 Sum_probs=65.8
Q ss_pred CCCceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 8 SEKKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 8 ~~~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+.+..|.|+||+.. .++.|+|++++||.+||++|+++.|+|+++|||||.||+|+|+.||++|+|++|+||
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstL 88 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNL 88 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEE
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEE
Confidence 45678999999964 689999999999999999999999999999999999999999999999999999999
No 3
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.74 E-value=7.3e-18 Score=137.38 Aligned_cols=69 Identities=25% Similarity=0.453 Sum_probs=65.2
Q ss_pred CCceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
++..|+|+||+.+ ..+.|+|++++||.+||++|++++++++++|||||+||+|+|+.+|++|+| +|++|
T Consensus 2 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i 71 (90)
T 4dwf_A 2 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVI 71 (90)
T ss_dssp CCCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEE
T ss_pred CCcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEE
Confidence 4567999999974 589999999999999999999999999999999999999999999999999 89999
No 4
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5.6e-18 Score=144.67 Aligned_cols=71 Identities=24% Similarity=0.335 Sum_probs=65.5
Q ss_pred CCCceEEEEEE-cC-CCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 8 SEKKLITIVVK-TP-KEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 8 ~~~~~i~V~VK-t~-~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.....|+|+|| ++ +++++|+|+++.||++||++|++++++|+++|||||+||+|||++||++|||++|+||
T Consensus 11 ~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TI 83 (118)
T 2daf_A 11 VEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIV 83 (118)
T ss_dssp CCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEE
T ss_pred ccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEE
Confidence 34556888888 54 4689999999999999999999999999999999999999999999999999999999
No 5
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=6.1e-18 Score=141.47 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=67.8
Q ss_pred cCCCceEEEEEEcC-CCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 7 ESEKKLITIVVKTP-KEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 7 ~~~~~~i~V~VKt~-~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
++....|+|+||+. +++++|+|++++||.+||++|+++.|+|+++|||||.||+|+|+.||++|+|++|+||
T Consensus 23 ~~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstl 95 (100)
T 1uh6_A 23 EGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNL 95 (100)
T ss_dssp SSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEE
T ss_pred CCCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEE
Confidence 44566799999997 5689999999999999999999999999999999999999999999999999999999
No 6
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.8e-17 Score=137.70 Aligned_cols=69 Identities=42% Similarity=0.805 Sum_probs=66.3
Q ss_pred CceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+..|+|+||+.++++.|+|++++||.+||++|++++++++++|||||+||+|+|+.+|++|+|++|++|
T Consensus 15 ~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i 83 (106)
T 1wx7_A 15 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTV 83 (106)
T ss_dssp SSEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEE
T ss_pred CceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEE
Confidence 567999999987788999999999999999999999999999999999999999999999999999999
No 7
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.71 E-value=4.4e-17 Score=129.45 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=64.8
Q ss_pred ceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 11 KLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 11 ~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..|+|+||+.+ ..+.|+|++++||.+||++|++++++|+++|||+|+||.|+|+.+|++|+|++|++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l 71 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTV 71 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEE
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEE
Confidence 45999999965 579999999999999999999999999999999999999999999999999999999
No 8
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.71 E-value=5e-17 Score=133.02 Aligned_cols=70 Identities=29% Similarity=0.412 Sum_probs=66.3
Q ss_pred CCceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
....|+|+||+.+ ..+.|+|++++||.+||++|++++++++++|||+|+||.|+|+.+|++|||++|++|
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i 84 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 84 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEE
Confidence 3567999999865 589999999999999999999999999999999999999999999999999999999
No 9
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2e-17 Score=139.76 Aligned_cols=66 Identities=26% Similarity=0.480 Sum_probs=62.7
Q ss_pred EEEEEEcC-CCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTP-KEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~-~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+. +..+.|+|++++||.+||++|++++++++++|||||+||+|+|+.+|++|||++|++|
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i 68 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQV 68 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEE
Confidence 78999986 5689999999999999999999999999999999999999999999999999999999
No 10
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.69 E-value=6.7e-17 Score=131.09 Aligned_cols=69 Identities=25% Similarity=0.453 Sum_probs=64.6
Q ss_pred CCceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.+..|+|+||+.+ ..+.|+|++++||.+||++|++++++|+++|||||+||+|+|+.+|++|+| +|++|
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i 83 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVI 83 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEE
Confidence 3567999999974 578999999999999999999999999999999999999999999999999 89999
No 11
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=1.2e-16 Score=132.73 Aligned_cols=69 Identities=26% Similarity=0.347 Sum_probs=65.6
Q ss_pred CCceEEEEEEcCCCeE-EEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~~~~-~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
....|+|+||+.+..| +|+|++++||.+||++|++++++|+++|||||+||+|+|+ +|++|+|++|++|
T Consensus 4 ~~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i 73 (96)
T 1wgg_A 4 GSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTV 73 (96)
T ss_dssp CCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEE
T ss_pred CCcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEE
Confidence 4567999999987889 6999999999999999999999999999999999999999 9999999999999
No 12
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1.2e-16 Score=133.58 Aligned_cols=70 Identities=41% Similarity=0.795 Sum_probs=66.9
Q ss_pred CCceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.+..|+|+||+.+++++|+|++++||.+||++|++++++|+++|||||+||+|+|+.+|++|+|++|++|
T Consensus 19 ~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI 88 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTV 88 (100)
T ss_dssp CTTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEE
T ss_pred CCCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEE
Confidence 3567999999987788999999999999999999999999999999999999999999999999999999
No 13
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.68 E-value=1.3e-16 Score=128.88 Aligned_cols=72 Identities=29% Similarity=0.358 Sum_probs=67.1
Q ss_pred cCCCceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 7 ESEKKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 7 ~~~~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..+...|+|+||+.+ ..+.|+|++++||.+||++|++++++|+++|||+|+||+|+|+.+|++|+|++|++|
T Consensus 7 ~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i 79 (88)
T 3dbh_I 7 VGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVL 79 (88)
T ss_dssp SSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEE
T ss_pred CCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEE
Confidence 344667999999864 589999999999999999999999999999999999999999999999999999999
No 14
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.68 E-value=1.5e-16 Score=127.77 Aligned_cols=69 Identities=25% Similarity=0.298 Sum_probs=64.5
Q ss_pred CceEEEEEEcC-CCeEEEEeCCCCcHHHHHHHHHHh---hCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTP-KEKQNIEIEEDASVTDFKEAVAKK---FNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~-~~~~~i~V~~~~TV~~LK~~I~~~---~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+..|+|+||+. +..++|+|++++||.+||++|+++ .++++++|||||+||+|+|+.+|++|+|++|++|
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i 75 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFV 75 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEE
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEE
Confidence 45699999997 468999999999999999999998 7899999999999999999999999999999999
No 15
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.68 E-value=1.6e-16 Score=125.08 Aligned_cols=66 Identities=27% Similarity=0.507 Sum_probs=63.3
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.+..++++|++++||.+||++|++++++|+++|||+|+||.|+|+.+|++|||++|++|
T Consensus 5 m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i 70 (77)
T 2bwf_A 5 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSV 70 (77)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEE
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEE
Confidence 899999955579999999999999999999999999999999999999999999999999999999
No 16
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=7.6e-17 Score=132.51 Aligned_cols=69 Identities=23% Similarity=0.416 Sum_probs=63.9
Q ss_pred CceEEEEEEcCCC---eEEEEeCCCCcHHHHHHHHHHhh--CCCcCCeEEEeCCeecCCCCCcccC--CCCCCCeE
Q psy11489 10 KKLITIVVKTPKE---KQNIEIEEDASVTDFKEAVAKKF--NALPEQLCLIFAGKIMKDHENLSNH--NMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~---~~~i~V~~~~TV~~LK~~I~~~~--~ip~~~qrLIf~GkiLkD~~tLs~~--gI~dg~tV 78 (433)
...|+|+||+.++ .++|+|++++||.+||++|++++ ++++++|||||+||+|+|+.+|++| +|++|++|
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i 80 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVL 80 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEE
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEE
Confidence 4569999999754 47778889999999999999998 9999999999999999999999999 99999999
No 17
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=7.5e-17 Score=133.11 Aligned_cols=70 Identities=33% Similarity=0.610 Sum_probs=67.0
Q ss_pred CCceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.+..|+|+||+.+..++|+|++++||.+||++|++++++++++|||||+||+|+|+.+|++|+|++|++|
T Consensus 14 ~~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i 83 (96)
T 1wx8_A 14 SSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTV 83 (96)
T ss_dssp CSCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEE
T ss_pred CCCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEE
Confidence 4567999999997789999999999999999999999999999999999999999999999999999999
No 18
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=132.45 Aligned_cols=70 Identities=49% Similarity=0.846 Sum_probs=66.4
Q ss_pred CCceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+...|+|+||+.+..++|+|++++||.+||++|++++++|+++|||||+||+|+|+.+|++|||++|++|
T Consensus 22 ~~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I 91 (101)
T 2klc_A 22 HPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTV 91 (101)
T ss_dssp -CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEE
T ss_pred CCCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEE
Confidence 3567999999987789999999999999999999999999999999999999999999999999999999
No 19
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.68 E-value=1.2e-16 Score=132.04 Aligned_cols=70 Identities=19% Similarity=0.316 Sum_probs=66.6
Q ss_pred CCceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCC-CCcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDH-ENLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~-~tLs~~gI~dg~tV 78 (433)
....|+|+||+.+++++|+|++++||.+||++|++++++|+++|||||+||+|+|+ .+|++|+|++|++|
T Consensus 12 ~~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl 82 (94)
T 2kan_A 12 AVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEI 82 (94)
T ss_dssp SSCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEE
T ss_pred CCCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEE
Confidence 35569999999877999999999999999999999999999999999999999999 89999999999999
No 20
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=2.1e-16 Score=137.41 Aligned_cols=69 Identities=51% Similarity=0.857 Sum_probs=65.9
Q ss_pred CceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
...|+|+||+.+..++|+|++++||.+||++|++++++++++|||||+||+|+|+.+|++|+|++|++|
T Consensus 30 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI 98 (125)
T 1j8c_A 30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTV 98 (125)
T ss_dssp CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEE
T ss_pred CCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 356999999986689999999999999999999999999999999999999999999999999999999
No 21
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=2.4e-16 Score=130.24 Aligned_cols=66 Identities=23% Similarity=0.347 Sum_probs=62.8
Q ss_pred EEEEEEcC-CCeEEEEeCCCCcHHHHHHHHHHh---hCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTP-KEKQNIEIEEDASVTDFKEAVAKK---FNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~-~~~~~i~V~~~~TV~~LK~~I~~~---~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+. +..++|+|++++||.+||++|+++ .++|+++|||||+||+|+|+.+|++|||++|++|
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i 70 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFV 70 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEE
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEE
Confidence 68999996 568999999999999999999999 7899999999999999999999999999999999
No 22
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.9e-16 Score=129.82 Aligned_cols=70 Identities=26% Similarity=0.387 Sum_probs=65.2
Q ss_pred CCceEEEEEEcCCCeEEEEeCCC-----CcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCC-CcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTPKEKQNIEIEED-----ASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHE-NLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~~~~~i~V~~~-----~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~-tLs~~gI~dg~tV 78 (433)
....|+|+||+.+.+++|+|+++ +||.+||++|++++++|+++|||||+||.|+|++ +|++|+|++|++|
T Consensus 4 ~~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i 79 (92)
T 1wxv_A 4 GSSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRV 79 (92)
T ss_dssp CCSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEE
T ss_pred CCCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEE
Confidence 34579999999878899999995 9999999999999999999999999999999955 8999999999999
No 23
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.67 E-value=1.5e-16 Score=132.76 Aligned_cols=70 Identities=16% Similarity=0.296 Sum_probs=62.5
Q ss_pred CCceEEEEEEcCCC-eEEE--EeCCCCcHHHHHHHH-HHhhCCCcCCeEEEeCCeecCCCCCcccCCC-CCCCeE
Q psy11489 9 EKKLITIVVKTPKE-KQNI--EIEEDASVTDFKEAV-AKKFNALPEQLCLIFAGKIMKDHENLSNHNM-KDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~~-~~~i--~V~~~~TV~~LK~~I-~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI-~dg~tV 78 (433)
....|+|+||+.++ +|+| +|++++||.+||++| +++.++|+++|||||+||+|+|+.+|++|+| ++|++|
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti 90 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTI 90 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEE
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEE
Confidence 35679999999754 5665 667999999999999 8888999999999999999999999999999 999999
No 24
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.67 E-value=1.8e-16 Score=129.10 Aligned_cols=66 Identities=32% Similarity=0.418 Sum_probs=63.1
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.+ ..++|+|++++||.+||++|++++++|+++|||||+||+|+|+.+|++|+|++|++|
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l 67 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVL 67 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEE
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEE
Confidence 689999864 689999999999999999999999999999999999999999999999999999999
No 25
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.4e-16 Score=132.43 Aligned_cols=70 Identities=30% Similarity=0.442 Sum_probs=64.5
Q ss_pred CCceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.+..|+|+||+.+ ..+.|+|++++||.+||++|++++++|+++|||||+||+|+|+.+|++|+|++|++|
T Consensus 19 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i 89 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 89 (98)
T ss_dssp ---CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEE
Confidence 3567999999864 589999999999999999999999999999999999999999999999999999999
No 26
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=125.59 Aligned_cols=71 Identities=25% Similarity=0.361 Sum_probs=66.3
Q ss_pred CCCceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 8 SEKKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 8 ~~~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+++..|+|+||+.+ ..+.|+|++++||.+||++|++++++|+++|||+|+||.|+|+.+|++|||++|++|
T Consensus 3 ~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i 74 (81)
T 2dzi_A 3 SGSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKL 74 (81)
T ss_dssp CSSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCC
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEE
Confidence 34567999999864 578999999999999999999999999999999999999999999999999999999
No 27
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2e-16 Score=127.80 Aligned_cols=70 Identities=20% Similarity=0.271 Sum_probs=66.1
Q ss_pred CCceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
++..|+|+||+.+ ..++|+|++++||.+||++|++++++|+++|||+|+||.|+|+.+|++|+|++|++|
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i 74 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTL 74 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEE
Confidence 3567999999975 578999999999999999999999999999999999999999999999999999999
No 28
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2.1e-16 Score=132.18 Aligned_cols=68 Identities=15% Similarity=0.258 Sum_probs=62.0
Q ss_pred ceEEEEEEcCC----C-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 11 KLITIVVKTPK----E-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 11 ~~i~V~VKt~~----~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
...+|.|+.++ + +++|+|++++||.+||++|++++++|+++|||||+||+|+|+.||++|+|++|++|
T Consensus 14 g~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti 86 (100)
T 1wju_A 14 GIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA 86 (100)
T ss_dssp CEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE
T ss_pred ceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE
Confidence 34566677654 3 69999999999999999999999999999999999999999999999999999999
No 29
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=4e-16 Score=128.62 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=62.1
Q ss_pred CCceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCC-CCcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDH-ENLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~-~tLs~~gI~dg~tV 78 (433)
+...|+|+||+.+ ..+.|+|++++||.+||++|+++. +++|||||+||+|+|+ .+|++|+|++|++|
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i 72 (95)
T 1wia_A 4 GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVI 72 (95)
T ss_dssp CCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEE
Confidence 4567999999875 578999999999999999999887 8999999999999999 89999999999999
No 30
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.66 E-value=2.2e-16 Score=127.93 Aligned_cols=68 Identities=9% Similarity=0.181 Sum_probs=64.7
Q ss_pred ceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCee-cCCCCCcccCCCCCCCeE
Q psy11489 11 KLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKI-MKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 11 ~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~Gki-LkD~~tLs~~gI~dg~tV 78 (433)
+.|+|+||+.. ..++|+|++++||.+||++|++++|+|+++|||||+||+ |+|+.+|++|+|++|++|
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i 78 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDI 78 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCE
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEE
Confidence 45999999965 589999999999999999999999999999999999999 999999999999999999
No 31
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=2.7e-16 Score=131.68 Aligned_cols=69 Identities=14% Similarity=0.259 Sum_probs=63.7
Q ss_pred CceEEEEEEcC-C----CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCC-CCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTP-K----EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDH-ENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~-~----~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~-~tLs~~gI~dg~tV 78 (433)
...|+|+||+. + ..++|+|++++||.+||++|++++++++++|||||+||+|+|+ .+|++|+|++|++|
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l 79 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMV 79 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEE
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEE
Confidence 45689999984 2 4789999999999999999999999999999999999999988 59999999999999
No 32
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=2.8e-16 Score=125.93 Aligned_cols=68 Identities=31% Similarity=0.415 Sum_probs=63.7
Q ss_pred ceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 11 KLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 11 ~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..|+|+||+.+ ..++|+|++++||.+||++|++++++|+++|||+|+||+|+|+.+|++|+|++|++|
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i 70 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSAL 70 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEE
Confidence 35899999865 579999999999999999999999999999999999999999999999999999999
No 33
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=4.1e-16 Score=124.79 Aligned_cols=68 Identities=31% Similarity=0.420 Sum_probs=64.5
Q ss_pred ceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 11 KLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 11 ~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..|+|+||+.+ ..+.|+|++++||.+||++|++++++|+++|||+|+||+|+|+.+|++|+|++|++|
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l 70 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTL 70 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEE
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEE
Confidence 35999999975 589999999999999999999999999999999999999999999999999999999
No 34
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=1.5e-16 Score=134.38 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=63.7
Q ss_pred CCCceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCc---------------CCeEEEeCCeecCC-CCCcccC
Q psy11489 8 SEKKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALP---------------EQLCLIFAGKIMKD-HENLSNH 70 (433)
Q Consensus 8 ~~~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~---------------~~qrLIf~GkiLkD-~~tLs~~ 70 (433)
++...|+|+||+.+ .+++|+|++++||.+||++|++++++++ ++|||||+||+|+| ++||++|
T Consensus 3 ~~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dy 82 (105)
T 1v2y_A 3 SGSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDY 82 (105)
T ss_dssp CCCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHH
T ss_pred CCCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHc
Confidence 44567999999975 5899999999999999999999999887 46799999999975 5799999
Q ss_pred CCCCCCeE
Q psy11489 71 NMKDGLTS 78 (433)
Q Consensus 71 gI~dg~tV 78 (433)
||++|++|
T Consensus 83 gI~~g~~l 90 (105)
T 1v2y_A 83 GIRNRDEV 90 (105)
T ss_dssp TCCSSEEE
T ss_pred CCCCCCEE
Confidence 99999999
No 35
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.65 E-value=4.2e-16 Score=128.24 Aligned_cols=66 Identities=32% Similarity=0.458 Sum_probs=63.5
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.+ ..+.|+|++++||.+||++|++++++|+++|||+|+||+|+|+.+|++|+|++|++|
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i 68 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 68 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEE
Confidence 789999865 579999999999999999999999999999999999999999999999999999999
No 36
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=6.3e-16 Score=122.28 Aligned_cols=67 Identities=19% Similarity=0.309 Sum_probs=63.1
Q ss_pred eEEEEEEcCC-Ce-EEEE-eCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTPK-EK-QNIE-IEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~-~~-~~i~-V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.|+|+||+.+ .. +.|+ |++++||.+||++|++++++|+++|||+|+||.|+|+.+|++|+|++|++|
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i 71 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTI 71 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEE
Confidence 4899999974 45 4899 999999999999999999999999999999999999999999999999999
No 37
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=5.9e-16 Score=125.61 Aligned_cols=70 Identities=20% Similarity=0.251 Sum_probs=65.4
Q ss_pred CCceEEEEEEcC-C-CeEEE-EeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTP-K-EKQNI-EIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~-~-~~~~i-~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+...|+|+||+. + ..+.| +|++++||.+||++|++++++|+++|||+|+||.|+|+.+|++|+|++|++|
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i 76 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDII 76 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEE
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEE
Confidence 456799999996 4 47999 5999999999999999999999999999999999999999999999999999
No 38
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.65 E-value=5.7e-16 Score=121.07 Aligned_cols=66 Identities=32% Similarity=0.418 Sum_probs=63.0
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.+ ..+.++|++++||.+||++|++++++|+++|||+|+||.|+|+.+|++|+|++|++|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i 67 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVL 67 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEE
Confidence 689999964 579999999999999999999999999999999999999999999999999999999
No 39
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=2.4e-16 Score=130.53 Aligned_cols=70 Identities=14% Similarity=0.293 Sum_probs=65.0
Q ss_pred CCCceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 8 SEKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 8 ~~~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.....|+|+||+.+..++|+|++++||.+||++|++++++|+++|||+|+||+| |+.+|++|+|++|++|
T Consensus 13 ~~~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i 82 (95)
T 1v86_A 13 VGKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKI 82 (95)
T ss_dssp CCCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEE
T ss_pred CCCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEE
Confidence 345679999998878899999999999999999999999999999999999999 5569999999999999
No 40
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.64 E-value=2.9e-16 Score=128.62 Aligned_cols=70 Identities=23% Similarity=0.315 Sum_probs=66.4
Q ss_pred CCceEEEEEEcCCCeEEE-EeCCCCcHHHHHHHHHHhhCCCcCCeEEE---eCCeecCCCCCcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTPKEKQNI-EIEEDASVTDFKEAVAKKFNALPEQLCLI---FAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~~~~~i-~V~~~~TV~~LK~~I~~~~~ip~~~qrLI---f~GkiLkD~~tLs~~gI~dg~tV 78 (433)
....|+|+||+.+..|+| +|++++||.+||++|++++++|+++|||| |+||+|+|+.+|++|+|++|++|
T Consensus 4 ~~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l 77 (90)
T 1v5t_A 4 GSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKI 77 (90)
T ss_dssp CCCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEE
T ss_pred CCceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEE
Confidence 355799999997778999 99999999999999999999999999999 99999999999999999999999
No 41
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.6e-16 Score=129.75 Aligned_cols=66 Identities=18% Similarity=0.305 Sum_probs=61.2
Q ss_pred EEEEEEcCCC-eEEEEeC--CCCcHHHHHHHH-HHhhCCCcCCeEEEeCCeecCCCCCcccCCC-CCCCeE
Q psy11489 13 ITIVVKTPKE-KQNIEIE--EDASVTDFKEAV-AKKFNALPEQLCLIFAGKIMKDHENLSNHNM-KDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~-~~~i~V~--~~~TV~~LK~~I-~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI-~dg~tV 78 (433)
|+|+||+.++ +++|+|+ +++||.+||++| +++.|+|+++|||||+||+|+|+.+|++|+| ++|++|
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl 72 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTI 72 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEE
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEE
Confidence 7999999765 5877655 999999999999 9999999999999999999999999999999 699999
No 42
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=5.4e-16 Score=130.74 Aligned_cols=69 Identities=9% Similarity=0.162 Sum_probs=65.0
Q ss_pred CceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
...|+|+||+.+ ..+.|+|++++||.+||++|++++++++++|||+|+||.|+|+.+|++|||++|++|
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti 90 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVV 90 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEE
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEE
Confidence 346999999964 578999999999999999999999999999999999999999999999999999999
No 43
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.63 E-value=9.2e-16 Score=119.89 Aligned_cols=66 Identities=32% Similarity=0.454 Sum_probs=62.9
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.+ ..+.++|++++||.+||++|++++++|+++|||+|+||.|+|+.+|++|+|++|++|
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i 67 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTL 67 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEE
Confidence 689999964 579999999999999999999999999999999999999999999999999999999
No 44
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=5.4e-16 Score=131.04 Aligned_cols=71 Identities=23% Similarity=0.329 Sum_probs=64.1
Q ss_pred CCCceEEEEEEcCCC----eEEEEeCC---------CCcHHHHHHHHHHhh--CCCcCC-eEEEeCCeecCCCCCcccCC
Q psy11489 8 SEKKLITIVVKTPKE----KQNIEIEE---------DASVTDFKEAVAKKF--NALPEQ-LCLIFAGKIMKDHENLSNHN 71 (433)
Q Consensus 8 ~~~~~i~V~VKt~~~----~~~i~V~~---------~~TV~~LK~~I~~~~--~ip~~~-qrLIf~GkiLkD~~tLs~~g 71 (433)
.....|+|+||+.++ +++|+|+. ++||.+||++|++++ ++++++ |||||+||+|+|+.+|++|+
T Consensus 8 ~~~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~ 87 (107)
T 1x1m_A 8 MSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYG 87 (107)
T ss_dssp CCCCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHT
T ss_pred ccCCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcC
Confidence 345569999999765 78898554 599999999999999 999999 99999999999999999999
Q ss_pred CCCCCeE
Q psy11489 72 MKDGLTS 78 (433)
Q Consensus 72 I~dg~tV 78 (433)
|++|++|
T Consensus 88 i~~g~~i 94 (107)
T 1x1m_A 88 IQPGSTV 94 (107)
T ss_dssp CCTTCEE
T ss_pred CCCCCEE
Confidence 9999999
No 45
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.63 E-value=5.2e-16 Score=123.17 Aligned_cols=68 Identities=13% Similarity=0.245 Sum_probs=64.6
Q ss_pred ceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 11 KLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 11 ~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+.|+|+||+.+ ..+.++|++++||.+||++|+++.++|+++|||+|+||.|+|+.||++|+|++|++|
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i 70 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVI 70 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEE
Confidence 35899999965 578999999999999999999999999999999999999999999999999999999
No 46
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.63 E-value=5.1e-16 Score=126.36 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=64.2
Q ss_pred eEEEEEEcC-CCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTP-KEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~-~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.|+|+||+. +..+.|+|++++||.+||++|++++++|+++|||+|+||.|+|+.+|++|+|++|++|
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i 71 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTV 71 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEE
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEE
Confidence 599999996 4678999999999999999999999999999999999999999999999999999999
No 47
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.8e-16 Score=132.79 Aligned_cols=69 Identities=26% Similarity=0.466 Sum_probs=63.7
Q ss_pred CceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
...|+|+||+.+..++|+|++++||.+||++|++++++|+++|||||+||.|+|+.+|++|||++|++|
T Consensus 26 ~m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI 94 (101)
T 3m63_B 26 AMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSV 94 (101)
T ss_dssp ---CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEE
T ss_pred CcEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEE
Confidence 345889999866789999999999999999999999999999999999999999999999999999999
No 48
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.63 E-value=5.1e-16 Score=127.87 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=63.5
Q ss_pred CceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
...|+|+||+ +..+.|+|++++||.+||++|++++++|+++|||+|+||.|+|+.+|++|+|++|++|
T Consensus 17 ~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI 84 (93)
T 2l7r_A 17 RGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTL 84 (93)
T ss_dssp ---CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEE
T ss_pred CCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEE
Confidence 4469999999 7789999999999999999999999999999999999999999999999999999999
No 49
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.62 E-value=4.4e-16 Score=130.13 Aligned_cols=70 Identities=17% Similarity=0.355 Sum_probs=60.9
Q ss_pred CCceEEEEEEcCCC---eEEEEeCCCCcHHHHHHHHHHhh-CCC-cCCeEEEeCCeecCCCCCcccC--CCCCCCeE
Q psy11489 9 EKKLITIVVKTPKE---KQNIEIEEDASVTDFKEAVAKKF-NAL-PEQLCLIFAGKIMKDHENLSNH--NMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~~---~~~i~V~~~~TV~~LK~~I~~~~-~ip-~~~qrLIf~GkiLkD~~tLs~~--gI~dg~tV 78 (433)
+...|+|+||+.++ .++|+|++++||.+||++|++++ +++ +++|||||+||+|+|+.+|++| +|++|+||
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~ti 96 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMV 96 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEE
Confidence 35669999999754 47899999999999999999875 555 5999999999999999999999 99999999
No 50
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.62 E-value=8.6e-16 Score=127.48 Aligned_cols=69 Identities=13% Similarity=0.237 Sum_probs=65.5
Q ss_pred CceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+..|+|+||+.. ..+.|+|.+++||.+||++|+++.++|+++|||||+||.|+|+.||++|+|++|++|
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I 88 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVI 88 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEE
Confidence 456999999975 579999999999999999999999999999999999999999999999999999999
No 51
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=2e-15 Score=122.90 Aligned_cols=67 Identities=28% Similarity=0.428 Sum_probs=63.3
Q ss_pred eEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
-|+|+||+.+ ..+.|+|++++||.+||++|++++++|+++|||+|+||.|+|+.+|++|+|++|++|
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i 76 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 76 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEE
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEE
Confidence 3789999865 589999999999999999999999999999999999999999999999999999999
No 52
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.60 E-value=2.8e-15 Score=127.47 Aligned_cols=68 Identities=31% Similarity=0.429 Sum_probs=64.9
Q ss_pred ceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 11 KLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 11 ~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..|+|+||+.+ ..+.|+|++++||.+||++|++++++|+++|||+|+||+|+|+.+|++|+|++|++|
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I 102 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 102 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEE
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEE
Confidence 46999999865 589999999999999999999999999999999999999999999999999999999
No 53
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=4.3e-15 Score=127.52 Aligned_cols=69 Identities=16% Similarity=0.266 Sum_probs=61.4
Q ss_pred CceEEEEEEcC-CCeEEEEeCCCCcHHHHHHHHHH------hhCC--CcCCeEEEeCCeecCCCCCcccCCCCCC--CeE
Q psy11489 10 KKLITIVVKTP-KEKQNIEIEEDASVTDFKEAVAK------KFNA--LPEQLCLIFAGKIMKDHENLSNHNMKDG--LTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~-~~~~~i~V~~~~TV~~LK~~I~~------~~~i--p~~~qrLIf~GkiLkD~~tLs~~gI~dg--~tV 78 (433)
...|.|+||+. +.+++|+|++++||.+||++|++ +.++ ++++|||||.||+|+|+.||++|+|+.+ +||
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl 93 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 93 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 45699999985 46899999999999999999998 4464 6999999999999999999999999877 467
No 54
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.60 E-value=3e-15 Score=127.12 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=64.9
Q ss_pred CceEEEEEEcC---C-CeEEEEeCC-CCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTP---K-EKQNIEIEE-DASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~---~-~~~~i~V~~-~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+..|+|+||+. + ..++|+|++ ++||.+||++|++++++|+++|||+|+||+|+|+.+|++|+|++|++|
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l 98 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEIL 98 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEE
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEE
Confidence 45699999997 4 479999998 999999999999999999999999999999999999999999999999
No 55
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.59 E-value=3.6e-15 Score=120.84 Aligned_cols=68 Identities=25% Similarity=0.403 Sum_probs=64.1
Q ss_pred ceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 11 KLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 11 ~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..+.+.++..+..++|+|++++||.+||++|++++++|+++|||+|+||+|+|+.+|++|+|++|++|
T Consensus 11 ~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l 78 (85)
T 2kd0_A 11 STIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKL 78 (85)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEE
T ss_pred CcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEE
Confidence 45777777778889999999999999999999999999999999999999999999999999999999
No 56
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.58 E-value=6e-15 Score=122.20 Aligned_cols=66 Identities=32% Similarity=0.458 Sum_probs=63.0
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.+ ..+.|+|++++||.+||++|++++++|+++|||+|+||.|+|+.+|++|||++|++|
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i 67 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEE
Confidence 689999964 579999999999999999999999999999999999999999999999999999999
No 57
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.58 E-value=2.4e-15 Score=129.23 Aligned_cols=66 Identities=17% Similarity=0.264 Sum_probs=61.3
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCC-------CCCeE
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMK-------DGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~-------dg~tV 78 (433)
|.|+|++.+.++.|+|++++||.+||++|+.+.|+|+++|||||+||+|+|+.||++|||+ +++||
T Consensus 3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL 75 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATV 75 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEE
T ss_pred EEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEE
Confidence 5667776555799999999999999999999999999999999999999999999999999 79999
No 58
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.57 E-value=4.9e-15 Score=126.98 Aligned_cols=66 Identities=15% Similarity=0.264 Sum_probs=60.6
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCC-------CCeE
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKD-------GLTS 78 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~d-------g~tV 78 (433)
|-|.||..+.++.++|++++||.+||++|+++.|+|+++|||||.||+|+|++||++|||++ ++||
T Consensus 3 vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl 75 (118)
T 4ajy_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATV 75 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEE
T ss_pred eEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEE
Confidence 44556655557888999999999999999999999999999999999999999999999999 9999
No 59
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.57 E-value=6.4e-15 Score=128.06 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=62.2
Q ss_pred CceEEEEEEcC-CCeEEEEeCCCCcHHHHHHHHHH------hhCC--CcCCeEEEeCCeecCCCCCcccCCCCCCC--eE
Q psy11489 10 KKLITIVVKTP-KEKQNIEIEEDASVTDFKEAVAK------KFNA--LPEQLCLIFAGKIMKDHENLSNHNMKDGL--TS 78 (433)
Q Consensus 10 ~~~i~V~VKt~-~~~~~i~V~~~~TV~~LK~~I~~------~~~i--p~~~qrLIf~GkiLkD~~tLs~~gI~dg~--tV 78 (433)
...|.|+||+. +.+++|+|++++||.+||++|++ +.++ ++++|||||.||+|+|+.||++|+|++|+ ||
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 45699999986 56899999999999999999998 5677 48999999999999999999999999777 67
No 60
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.56 E-value=1.5e-14 Score=122.88 Aligned_cols=68 Identities=31% Similarity=0.429 Sum_probs=64.8
Q ss_pred ceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 11 KLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 11 ~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..|+|+||+.+ ..+.|+|++++||.+||++|++++++++++|||+|+||.|+|+.+|++|+|++|++|
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I 102 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 102 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEE
Confidence 46999999964 579999999999999999999999999999999999999999999999999999999
No 61
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.34 E-value=2.3e-16 Score=124.05 Aligned_cols=66 Identities=27% Similarity=0.423 Sum_probs=62.7
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.+ ..+.++|++++||.+||++|++++++|+++|||+|+||.|+|+.+|++|||++|++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i 67 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIV 67 (76)
Confidence 679999965 578999999999999999999999999999999999999999999999999999999
No 62
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.56 E-value=1.1e-14 Score=122.66 Aligned_cols=67 Identities=16% Similarity=0.318 Sum_probs=62.3
Q ss_pred eEEEEEEcCC---CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCC-CCCCeE
Q psy11489 12 LITIVVKTPK---EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM-KDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~---~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI-~dg~tV 78 (433)
.++|+|+... .+++|+|++++||.+||++|++++|+|+++|||||+||.++|+.||++||| ++|++|
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~ 94 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSA 94 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEE
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEE
Confidence 4788888854 479999999999999999999999999999999999999999999999999 599999
No 63
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.53 E-value=3e-14 Score=127.64 Aligned_cols=69 Identities=22% Similarity=0.296 Sum_probs=65.2
Q ss_pred CceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+..|+|+||+.+ ..+.|+|++++||.+||++|++++++|+++|||+|+||+|+|+.+|++|+|++|++|
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l 148 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTV 148 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEE
Confidence 445899999975 589999999999999999999999999999999999999999999999999999999
No 64
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.52 E-value=2.6e-14 Score=122.12 Aligned_cols=69 Identities=20% Similarity=0.262 Sum_probs=64.1
Q ss_pred CceEEEEEEcCC-----------CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPK-----------EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~-----------~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+..|+|+|+.++ ..++|+|++++||.+||++|++++++|+++|||||+||+|+|+.+|++|+|++|++|
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 346899999864 268999999999999999999999999999999999999999999999999999999
No 65
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=3.4e-14 Score=121.44 Aligned_cols=67 Identities=28% Similarity=0.398 Sum_probs=63.9
Q ss_pred eEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..+|+||+.. ..++|+|++++||.+||++|++++++|+++|||+|+||+|+|+.+|++|+|++|++|
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI 76 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTL 76 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEE
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEE
Confidence 4789999865 579999999999999999999999999999999999999999999999999999999
No 66
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.52 E-value=2.8e-14 Score=130.20 Aligned_cols=66 Identities=32% Similarity=0.463 Sum_probs=63.3
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.+ ..+.|+|++++||.+||++|++++++|+++|||||+||+|+|+.+|++|+|++|++|
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI 67 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEE
Confidence 689999975 579999999999999999999999999999999999999999999999999999999
No 67
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.52 E-value=2.2e-14 Score=116.78 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=60.4
Q ss_pred eEEEEEEcC--CC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEe-------CCeecCCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTP--KE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIF-------AGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~--~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf-------~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.|+|.|.+. +. .+++.|++++||.+||++|+.++|+|+++||||| .|+.|+|+.+|++|+|++|++|
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~i 78 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVI 78 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEE
Confidence 467777764 33 5789999999999999999999999999999997 5899999999999999999999
No 68
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.51 E-value=3e-14 Score=123.73 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=58.9
Q ss_pred CceEEEEEEcCCC-eE-EEEeCCCCcHHHHHHHHH-----HhhCCCc--CCeEEEeCCeecCCCCCcccCCCCCC
Q psy11489 10 KKLITIVVKTPKE-KQ-NIEIEEDASVTDFKEAVA-----KKFNALP--EQLCLIFAGKIMKDHENLSNHNMKDG 75 (433)
Q Consensus 10 ~~~i~V~VKt~~~-~~-~i~V~~~~TV~~LK~~I~-----~~~~ip~--~~qrLIf~GkiLkD~~tLs~~gI~dg 75 (433)
.+.|+|+||+.++ .+ .++|++++||.+||++|+ ++.++|+ ++|||||+||+|+|+.||++|+|++|
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~ 88 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVS 88 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTT
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcC
Confidence 3679999999765 67 699999999999999995 4557886 89999999999999999999999999
No 69
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.51 E-value=4.4e-14 Score=128.47 Aligned_cols=70 Identities=30% Similarity=0.420 Sum_probs=65.0
Q ss_pred CCceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
....|+|+||+.+ ..+.|+|++++||.+||++|++++++|+++|||+|+||.|+|+.+|++|+|++|++|
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l 87 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 87 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEE
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCccccee
Confidence 3567999999765 579999999999999999999999999999999999999999999999999999999
No 70
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.50 E-value=5e-14 Score=119.02 Aligned_cols=69 Identities=10% Similarity=0.157 Sum_probs=63.8
Q ss_pred CceEEEEEEcCCCeEEEEeC-CCCcHHHHHHHHHHhhCCCcCCeEEEeCCe-----------e----cCCCCCcccCCCC
Q psy11489 10 KKLITIVVKTPKEKQNIEIE-EDASVTDFKEAVAKKFNALPEQLCLIFAGK-----------I----MKDHENLSNHNMK 73 (433)
Q Consensus 10 ~~~i~V~VKt~~~~~~i~V~-~~~TV~~LK~~I~~~~~ip~~~qrLIf~Gk-----------i----LkD~~tLs~~gI~ 73 (433)
.+.|.|+||+.++++.|+|+ +++||.+||++|++++++|+++|||+|.|+ . ++|+.+|++|||+
T Consensus 5 ~~~M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 5 SSGTMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp CCCEEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred CCeEEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 44589999999888899999 999999999999999999999999999998 4 5788899999999
Q ss_pred CCCeE
Q psy11489 74 DGLTS 78 (433)
Q Consensus 74 dg~tV 78 (433)
+|++|
T Consensus 85 ~G~~L 89 (107)
T 1wf9_A 85 HGSMV 89 (107)
T ss_dssp TTCEE
T ss_pred CCCEE
Confidence 99999
No 71
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.49 E-value=5.2e-14 Score=117.14 Aligned_cols=70 Identities=16% Similarity=0.157 Sum_probs=62.8
Q ss_pred CCceEEEEEEcCCC---eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCe---e----cCCCCCcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTPKE---KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGK---I----MKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~~---~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~Gk---i----LkD~~tLs~~gI~dg~tV 78 (433)
++..|+|.|++... .++++|++++||.+||++|+.++|+|+++|||||.|+ . ++|+.+|++|+|++|++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 45679999998543 6899999999999999999999999999999999984 3 488889999999999999
No 72
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.49 E-value=6.7e-14 Score=116.00 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=62.8
Q ss_pred CCceEEEEEEcCCC---eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeC--Ce---ec-CCCCCcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTPKE---KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFA--GK---IM-KDHENLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~~---~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~--Gk---iL-kD~~tLs~~gI~dg~tV 78 (433)
.+..|+|+|++... .++++|++++||.+||++|++++|+|+++|||||. || .| +|+.+|++|+|++|++|
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence 35679999998653 68999999999999999999999999999999998 55 34 88889999999999999
No 73
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=9.4e-14 Score=114.70 Aligned_cols=69 Identities=12% Similarity=0.191 Sum_probs=62.6
Q ss_pred CceEEEEEEcCCC--eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCC---ee----cCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKE--KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAG---KI----MKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~--~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~G---ki----LkD~~tLs~~gI~dg~tV 78 (433)
...|+|+|++.+. .++++|++++||.+||++|++++|+|+++|||+|.| +. ++|+.+|++|+|++|++|
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l 82 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRI 82 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEE
T ss_pred CcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEE
Confidence 3459999998765 699999999999999999999999999999999987 54 578889999999999999
No 74
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.49 E-value=2.1e-15 Score=131.43 Aligned_cols=79 Identities=32% Similarity=0.446 Sum_probs=1.9
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeEecccCcccccCCC
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTSLKQLPLTKEIMHP 91 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV~~~~~~~~~~~~~ 91 (433)
|+|+||+.+ ..++|+|++++||.+||++|++++++|+++|||+|+|++|+|+.+|++|+|++|++|.+.+.+.++++||
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~~~ 80 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEP 80 (128)
T ss_dssp ----------------------------------------------------------------------------CCCH
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCCCCh
Confidence 678999965 5799999999999999999999999999999999999999999999999999999995555555555444
No 75
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.49 E-value=6e-14 Score=130.10 Aligned_cols=67 Identities=31% Similarity=0.395 Sum_probs=64.3
Q ss_pred eEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.|+|+||+.+ ..++|+|++++||.+||++|++++++|+++|||||+||+|+|+.+|++|+|++|++|
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI 172 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 172 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEE
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 4899999975 579999999999999999999999999999999999999999999999999999999
No 76
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.47 E-value=9.5e-14 Score=124.36 Aligned_cols=66 Identities=20% Similarity=0.298 Sum_probs=63.1
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE-e-CCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLI-F-AGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI-f-~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.+ ..+.|+|++++||.+||++|++++++|+++|||+ | +||+|+|+.+|++|+|++|++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l 71 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTV 71 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEE
Confidence 789999865 5799999999999999999999999999999999 9 7999999999999999999999
No 77
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=5.8e-14 Score=117.47 Aligned_cols=67 Identities=12% Similarity=0.259 Sum_probs=62.0
Q ss_pred ceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEe--CCeecCCCCCcccCCCCCCCeE
Q psy11489 11 KLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIF--AGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 11 ~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf--~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+.+.|+||+.+++++|+|++++||.+||++|+++++||+++|||+| .|+ |+|+.+|++|+|+.|++|
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL 76 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSL 76 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEE
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEE
Confidence 4577888888889999999999999999999999999999999996 555 999999999999999999
No 78
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=112.31 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=60.8
Q ss_pred eEEEEEEcCCC-e--EEE-EeCCCCcHHHHHHHHHHh-hCCCcCCeEEEeC--CeecCCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTPKE-K--QNI-EIEEDASVTDFKEAVAKK-FNALPEQLCLIFA--GKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~~-~--~~i-~V~~~~TV~~LK~~I~~~-~~ip~~~qrLIf~--GkiLkD~~tLs~~gI~dg~tV 78 (433)
.|+|+||+.++ + .+| +|++++||.+||++|+++ .++++++|||+|. ||+|+|+.||++|+|++|++|
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl 83 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATL 83 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEE
Confidence 49999999753 3 368 999999999999999994 7999999999976 999999999999999999999
No 79
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.45 E-value=2.2e-13 Score=120.20 Aligned_cols=66 Identities=32% Similarity=0.458 Sum_probs=63.0
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.+ ..++++|++++||.+||++|++++++|+++|||+|+||.|+|+.+|++|+|++|++|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l 67 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCee
Confidence 689999864 589999999999999999999999999999999999999999999999999999999
No 80
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.44 E-value=3.4e-13 Score=118.93 Aligned_cols=67 Identities=31% Similarity=0.429 Sum_probs=63.5
Q ss_pred eEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.++|+||+.+ ..+.++|++++||.+||++|++++++|+++|||+|+||.|+|+.+|++|+|++|++|
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i 143 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 143 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEE
Confidence 4789999864 589999999999999999999999999999999999999999999999999999999
No 81
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.43 E-value=2.3e-13 Score=123.65 Aligned_cols=67 Identities=31% Similarity=0.429 Sum_probs=63.1
Q ss_pred eEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.+.|+||+.+ ..+.++|++++||.+||++|++++++|+++|||||+||.|+|+.+|++|+|++|++|
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl 163 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 163 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEE
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEE
Confidence 4778888764 579999999999999999999999999999999999999999999999999999999
No 82
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.39 E-value=3.9e-13 Score=134.19 Aligned_cols=69 Identities=19% Similarity=0.360 Sum_probs=64.1
Q ss_pred CceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE---eCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLI---FAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI---f~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.+.|+|+||+.+++++|+|++++||.+||++|++++|||+++|||| |+||+|+|+.+|++|+|++|++|
T Consensus 3 ~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l 74 (320)
T 3shq_A 3 VKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKL 74 (320)
T ss_dssp -CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEE
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEE
Confidence 4569999999888999999999999999999999999999999999 99999999999999999999999
No 83
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.39 E-value=2.7e-14 Score=128.15 Aligned_cols=72 Identities=32% Similarity=0.432 Sum_probs=0.0
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeEecccCc
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTSLKQLPL 84 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV~~~~~~ 84 (433)
|+|+||+.+ ..+.|+|++++||.+||++|++++++|+++|||||+|++|+|+.+|++|+|++|++|.+.+++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl 73 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeec
Confidence 678999974 578999999999999999999999999999999999999999999999999999999333333
No 84
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.39 E-value=9.8e-13 Score=113.64 Aligned_cols=68 Identities=10% Similarity=0.215 Sum_probs=62.0
Q ss_pred ceEEEEEEcCCC--eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCC---ee----cCCCCCcccCCCCCCCeE
Q psy11489 11 KLITIVVKTPKE--KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAG---KI----MKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 11 ~~i~V~VKt~~~--~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~G---ki----LkD~~tLs~~gI~dg~tV 78 (433)
..|+|+|++.+. .++++|++++||.+||++|++++|+|+++|||+|.| +. ++|+.+|++|||++|++|
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~i 81 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRI 81 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEE
Confidence 369999998765 699999999999999999999999999999999987 43 478889999999999999
No 85
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.38 E-value=1e-12 Score=130.13 Aligned_cols=70 Identities=30% Similarity=0.404 Sum_probs=66.0
Q ss_pred CCceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
....|+|+||+.. ..++|+|++++||.+||++|++++++|+++|||||+||+|+|+.+|++|+|++|++|
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL 300 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 300 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEE
Confidence 3567999999964 579999999999999999999999999999999999999999999999999999999
No 86
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.33 E-value=1.9e-12 Score=104.76 Aligned_cols=66 Identities=8% Similarity=0.153 Sum_probs=60.1
Q ss_pred EEEEEEcCCCeEEEE-eCCCCcHHHHHHHHHHhhCCCcCCeEEEeC--CeecC---CCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKEKQNIE-IEEDASVTDFKEAVAKKFNALPEQLCLIFA--GKIMK---DHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~~~~i~-V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~--GkiLk---D~~tLs~~gI~dg~tV 78 (433)
|+|+||+.++++.|+ |++++||.+||++|++++++++++|||+|. +|.|. |+.+|++|||++|++|
T Consensus 1 m~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l 72 (86)
T 2kzr_A 1 WRVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDML 72 (86)
T ss_dssp CCEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEE
T ss_pred CEEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEE
Confidence 578999998887788 999999999999999999999999999987 48874 5679999999999999
No 87
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=9e-12 Score=102.97 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=64.7
Q ss_pred CceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+..|+|+||+.+ ..+.++|.+++++..||++++++.+++++++||+|.|+.|.|++|+++|++++|++|
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~I 74 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTI 74 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 567999999865 478999999999999999999999999999999999999999999999999999999
No 88
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.21 E-value=6.7e-11 Score=97.16 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=64.5
Q ss_pred CceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+..|+|+||+.+ ..+.++|.++++++.||+.++++.+++++++||+|.|+.|.+++|.++|++++|++|
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~I 72 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTI 72 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 456999999865 478999999999999999999999999999999999999999999999999999999
No 89
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.19 E-value=7.8e-11 Score=92.32 Aligned_cols=66 Identities=15% Similarity=0.240 Sum_probs=63.0
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||+.+ ..+.+.|.++++++.|++.++++.|++++++||+|.|+.|.+++|.++|++++|++|
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~I 68 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTI 68 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 789999865 478999999999999999999999999999999999999999999999999999999
No 90
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.18 E-value=9.2e-11 Score=93.69 Aligned_cols=70 Identities=11% Similarity=0.200 Sum_probs=65.3
Q ss_pred CCceEEEEEEcCCC--eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTPKE--KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~~--~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
++..|+|+||+.++ .+.++|..++++..|++.++++.+++++++||+|.|+.|.+++|.++|++++|++|
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~I 75 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLI 75 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 35669999999653 68999999999999999999999999999999999999999999999999999999
No 91
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.18 E-value=2.2e-12 Score=119.22 Aligned_cols=73 Identities=23% Similarity=0.291 Sum_probs=1.7
Q ss_pred EEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeEecccCcccccCC
Q psy11489 13 ITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTSLKQLPLTKEIMH 90 (433)
Q Consensus 13 i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV~~~~~~~~~~~~ 90 (433)
|.|+||+.+ ..++|+|++++||.+||++|+++.++|+++|||||.||+|+|+.+|+ +++||-+.+++.++++|
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~~k 74 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGKKK 74 (189)
T ss_dssp ----------------------------------------------------------------------------CCC
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCccc
Confidence 679999975 57999999999999999999999999999999999999999999998 89999666666666655
No 92
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.18 E-value=1.2e-10 Score=95.90 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=65.0
Q ss_pred CceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+..|+|+||+.+ ..+.|.|..++++..|++.++++.+++++++||+|.|+.|.+++|+++|++++|++|
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~I 84 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTI 84 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEE
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 567999999865 468899999999999999999999999999999999999999999999999999999
No 93
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.16 E-value=1.7e-10 Score=97.28 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=65.3
Q ss_pred CCCceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 8 SEKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 8 ~~~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..+..|+|+|++.+..+.|+|..++++..|++.++++.+++++++||+|.|+.|.+++|.++|++++|++|
T Consensus 27 ~~~~~I~IkV~~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~I 97 (106)
T 2eke_C 27 KPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDII 97 (106)
T ss_dssp CCCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEE
T ss_pred CCCCeEEEEEecCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEE
Confidence 34567999999933478899999999999999999999999999999999999999999999999999999
No 94
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.14 E-value=2e-10 Score=96.61 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=65.0
Q ss_pred CceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+..|+|+||+.. ..+.|.|..+.++..|++.++++.+++++++||+|.|+.|.+++|+.+|++++|++|
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~I 91 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTI 91 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEE
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 457999999865 468999999999999999999999999999999999999999999999999999999
No 95
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.09 E-value=1.4e-10 Score=98.53 Aligned_cols=69 Identities=13% Similarity=0.232 Sum_probs=65.1
Q ss_pred CceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+..|+|+||+.. ..+.|+|..++++..||+.++++.+++++++||+|.|+.|.+++|+++|++++|++|
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~I 93 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVI 93 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 456999999865 468999999999999999999999999999999999999999999999999999999
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.06 E-value=4.8e-10 Score=92.62 Aligned_cols=69 Identities=16% Similarity=0.298 Sum_probs=59.1
Q ss_pred CceEEEEEEcC----CCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCC------ee-c-CCCCCcccCCCCCCCe
Q psy11489 10 KKLITIVVKTP----KEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAG------KI-M-KDHENLSNHNMKDGLT 77 (433)
Q Consensus 10 ~~~i~V~VKt~----~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~G------ki-L-kD~~tLs~~gI~dg~t 77 (433)
...|+|+|++. +..+++.++.++||.+||.+|++.+++|+..|||.|.+ .+ | +|..+|+.|+|.+|++
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC 86 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence 45689988864 23688999999999999999999999999999999873 22 5 4556999999999999
Q ss_pred E
Q psy11489 78 S 78 (433)
Q Consensus 78 V 78 (433)
|
T Consensus 87 I 87 (97)
T 1wjn_A 87 L 87 (97)
T ss_dssp E
T ss_pred E
Confidence 9
No 97
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.05 E-value=6.2e-11 Score=91.49 Aligned_cols=51 Identities=29% Similarity=0.517 Sum_probs=47.9
Q ss_pred CCCCCchhhhHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcChH
Q psy11489 339 NAQAPPEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANPQ 389 (433)
Q Consensus 339 ~~~~~pe~~y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~P~ 389 (433)
.+.++||++|++||++|.+|||+|+++|++||..++++++.|+++|++++.
T Consensus 10 ~~~~~pe~~y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 10 HSLQAPEVRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp CSSCCHHHHTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred CCCCChHHHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 567899999999999999999999999999999999999999999998754
No 98
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.93 E-value=4.4e-10 Score=82.91 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=42.7
Q ss_pred CCchhhhHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhc
Q psy11489 342 APPEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMA 386 (433)
Q Consensus 342 ~~pe~~y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~ 386 (433)
.+||++|++||++|++|||.|++.|++++...+++++.+|+.|+.
T Consensus 3 ~~~ee~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 3 SGSSGQTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp CSSCTTHHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCHHHhhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 578999999999999999999999999999999999999998874
No 99
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.89 E-value=4.4e-10 Score=84.64 Aligned_cols=50 Identities=26% Similarity=0.431 Sum_probs=46.8
Q ss_pred CCCCCchhhhHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcCh
Q psy11489 339 NAQAPPEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANP 388 (433)
Q Consensus 339 ~~~~~pe~~y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~P 388 (433)
.++++|+++|++||++|.+|||.|+++|++||..++++++.|+++|+++|
T Consensus 8 ~~~~~pe~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 8 GGILDPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp CGGGSHHHHTHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred CCCCChHHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 45678999999999999999999999999999999999999999999865
No 100
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.86 E-value=1.2e-08 Score=87.04 Aligned_cols=69 Identities=13% Similarity=0.237 Sum_probs=64.3
Q ss_pred CceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
...|+|+|+..+ ..+.|.|..+.++..|++.++++.+++++.+||+|.|+.|.+++|..+++++||++|
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~I 107 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVI 107 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEE
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEE
Confidence 467999999865 468899999999999999999999999999999999999999999999999999999
No 101
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.81 E-value=1.5e-09 Score=78.01 Aligned_cols=45 Identities=29% Similarity=0.500 Sum_probs=42.9
Q ss_pred CchhhhHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcC
Q psy11489 343 PPEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMAN 387 (433)
Q Consensus 343 ~pe~~y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~ 387 (433)
||+++|.++|++|.+|||.|+++|++|+..++++++.|+++|+++
T Consensus 2 ~p~~~~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 2 DPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp CHHHHTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred CHhHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 799999999999999999999999999999999999999999863
No 102
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=98.79 E-value=2.6e-09 Score=78.70 Aligned_cols=50 Identities=38% Similarity=0.678 Sum_probs=46.6
Q ss_pred CCCCCchhhhHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcCh
Q psy11489 339 NAQAPPEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANP 388 (433)
Q Consensus 339 ~~~~~pe~~y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~P 388 (433)
.+.++|+++|.++|++|.+|||+|+++|+.|+..++++++.|+++|+++|
T Consensus 3 ~~~~~p~~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 3 PEFQNPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp CCTTSTTTTTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred CCCCCchhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 35678999999999999999999999999999999999999999999875
No 103
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.75 E-value=3e-09 Score=83.82 Aligned_cols=50 Identities=28% Similarity=0.533 Sum_probs=46.7
Q ss_pred CCCCCchhhhHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcCh
Q psy11489 339 NAQAPPEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANP 388 (433)
Q Consensus 339 ~~~~~pe~~y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~P 388 (433)
.+..+|+++|.+||++|.+|||.|+++|++||..++++++.|+++|++.+
T Consensus 20 ~~~~~pe~~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~ 69 (74)
T 1vej_A 20 PTSLFTEGRYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGAS 69 (74)
T ss_dssp CCGGGTTTTSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCC
T ss_pred CCCCCchHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 45678999999999999999999999999999999999999999999864
No 104
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.74 E-value=1.6e-09 Score=80.37 Aligned_cols=48 Identities=29% Similarity=0.504 Sum_probs=44.5
Q ss_pred CCchhhhHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcChH
Q psy11489 342 APPEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANPQ 389 (433)
Q Consensus 342 ~~pe~~y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~P~ 389 (433)
.+|+++|.++|++|.+|||.|+++|++||..++++++.|+++|++.+.
T Consensus 3 ~~p~~~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~ 50 (54)
T 2dah_A 3 SGSSGHFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSG 50 (54)
T ss_dssp SSCCCSSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSC
T ss_pred CChhhhHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 468889999999999999999999999999999999999999987653
No 105
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=98.66 E-value=1e-08 Score=75.79 Aligned_cols=49 Identities=37% Similarity=0.689 Sum_probs=45.6
Q ss_pred CCCCchhhhHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcCh
Q psy11489 340 AQAPPEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANP 388 (433)
Q Consensus 340 ~~~~pe~~y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~P 388 (433)
..++|+++|.++|++|.+|||.|+++|+.|+..++++++.|+++|++++
T Consensus 3 ~~~~pe~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 3 LGSMPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp CSCCTHHHHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred CCCChhhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3568999999999999999999999999999999999999999998764
No 106
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.63 E-value=6.6e-08 Score=88.99 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=64.3
Q ss_pred CceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
...|+|+|+..+..+.|.|..++++..|++.++++.++++..+||+|.|+.|.+++|..+++++|||+|
T Consensus 55 ~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtI 123 (207)
T 3tix_A 55 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDII 123 (207)
T ss_dssp CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEE
T ss_pred CCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEE
Confidence 456899998655678999999999999999999999999999999999999999999999999999999
No 107
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.62 E-value=1.2e-07 Score=88.39 Aligned_cols=69 Identities=16% Similarity=0.238 Sum_probs=64.4
Q ss_pred CceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
...|+|+|+..+..+.+.|..++++..||+.++++.|++.+++||+|.|+.|.+++|..++++++|++|
T Consensus 27 ~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~I 95 (200)
T 3pge_A 27 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDII 95 (200)
T ss_dssp CCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEE
T ss_pred CCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 456899998655678999999999999999999999999999999999999999999999999999999
No 108
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.51 E-value=8.2e-08 Score=76.75 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=57.3
Q ss_pred eEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCee---c--CCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKI---M--KDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~Gki---L--kD~~tLs~~gI~dg~tV 78 (433)
.|.|.||+.++.+.|+|++++||.+||++|+++++++.+.+.|.+.-.. | .++.+|+++||+.|++|
T Consensus 4 ~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l 75 (80)
T 2pjh_A 4 SIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLL 75 (80)
T ss_dssp CCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCE
T ss_pred cEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEE
Confidence 4789999999999999999999999999999999999888766544332 3 36679999999999999
No 109
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.49 E-value=2.8e-08 Score=83.69 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=42.4
Q ss_pred CCCCCchhhhHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcCh
Q psy11489 339 NAQAPPEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANP 388 (433)
Q Consensus 339 ~~~~~pe~~y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~P 388 (433)
....+|+++|.+||++|.+|||.|++.|++||..++|+++.|++.|++.|
T Consensus 57 ~~~~~~e~~~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 57 TFTVTEGSQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp ------CCTTHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred CCCCCcccchHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 34557889999999999999999999999999999999999999999765
No 110
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.39 E-value=2e-06 Score=67.83 Aligned_cols=68 Identities=21% Similarity=0.360 Sum_probs=64.0
Q ss_pred ceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcC-CeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 11 KLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPE-QLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 11 ~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~-~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+.|++.+++.+ +.+.++|..+.+|.+|-+...++.+|+++ .+||.|.|..|..+.++.+|+++||+.|
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~I 77 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQV 77 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEE
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCcee
Confidence 56889999876 58999999999999999999999999999 9999999999999999999999999998
No 111
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.32 E-value=1.6e-06 Score=71.77 Aligned_cols=71 Identities=11% Similarity=0.236 Sum_probs=65.0
Q ss_pred CCCceEEEEEEcCCC--eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 8 SEKKLITIVVKTPKE--KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 8 ~~~~~i~V~VKt~~~--~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.++..|+|+|+..++ .+.|.|..+.++..|.+..+++.+++++.+|++|.|+.|.+++|..+++++||++|
T Consensus 21 ~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~I 93 (97)
T 2jxx_A 21 ETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLI 93 (97)
T ss_dssp CSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEE
T ss_pred CCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 346779999998644 57899999999999999999999999999999999999999999999999999999
No 112
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.18 E-value=2.2e-07 Score=86.61 Aligned_cols=69 Identities=16% Similarity=0.238 Sum_probs=0.0
Q ss_pred CceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+..|+|+|...+..+.|+|..++.+..|++.++++.|++++++|++|.|+.|.+++|.++++++||++|
T Consensus 19 ~e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtI 87 (227)
T 3v7o_A 19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDII 87 (227)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CCeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEE
Confidence 456888883234468889999999999999999999999999999999999999999999999999999
No 113
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.12 E-value=9.4e-06 Score=66.61 Aligned_cols=70 Identities=7% Similarity=0.180 Sum_probs=64.9
Q ss_pred CCceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 9 EKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 9 ~~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.+..|+|+|+..++.+.+.|..+...+.|.+..+++.|++++.+|++|.|..+.+++|-.++++++|++|
T Consensus 18 ~~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiI 87 (95)
T 2l76_A 18 TPRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADII 87 (95)
T ss_dssp CCCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEE
T ss_pred CCCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEE
Confidence 3556999999766778889999999999999999999999999999999999999999999999999999
No 114
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.05 E-value=1.4e-05 Score=74.90 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=66.6
Q ss_pred CCceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeEeccc
Q psy11489 9 EKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTSLKQL 82 (433)
Q Consensus 9 ~~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV~~~~ 82 (433)
.+..|+|+|+..+..+.|+|..++++..||+..+++.|++.+++|++|.|+.+.+++|..++.++|+++|.+.+
T Consensus 18 ~~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~ 91 (209)
T 3uf8_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (209)
T ss_dssp CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred CCCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhc
Confidence 35679999998545678999999999999999999999999999999999999999999999999999993333
No 115
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.98 E-value=1.5e-05 Score=63.74 Aligned_cols=68 Identities=10% Similarity=0.131 Sum_probs=60.5
Q ss_pred ceEEEEEEc---CCCeEEEEeCCCCcHHHHHHHHHHhhCCCc-----CCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 11 KLITIVVKT---PKEKQNIEIEEDASVTDFKEAVAKKFNALP-----EQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 11 ~~i~V~VKt---~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~-----~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..|+|+|.. .++.+++.|+...||++|++.|.+.++++. -.+|+.-+|.+|.++++|.+|+|++|+.|
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~L 78 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRL 78 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEE
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEE
Confidence 468899986 456899999999999999999999987654 35789999999999999999999999988
No 116
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.97 E-value=1.2e-05 Score=66.13 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=38.3
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecC
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMK 62 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLk 62 (433)
..++|.|.++.||..||++|++++||++++|+|||.||.|.
T Consensus 24 ~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 24 TAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred eEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 46889999999999999999999999999999999998765
No 117
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.86 E-value=2e-06 Score=86.53 Aligned_cols=69 Identities=16% Similarity=0.238 Sum_probs=0.0
Q ss_pred CceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+..|+|+|+..+..+.++|..+++++.|++.++++.|++++.+|++|.|+.|.+++|.++++++||++|
T Consensus 19 ~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~I 87 (360)
T 3ix6_A 19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDII 87 (360)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchh
Confidence 457888888755577889999999999999999999999999999999999999999999999999999
No 118
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.63 E-value=7.5e-06 Score=83.31 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=0.0
Q ss_pred CceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+..|+|+|+..+..+.|+|..+++++.||+..+++.+++..++|++|.|+.|.+++|.+++++++|++|
T Consensus 28 ~~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i 96 (389)
T 4da1_A 28 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDII 96 (389)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CCcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEe
Confidence 356888888744567789999999999999999999999999999999999999999999999999999
No 119
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.17 E-value=0.00018 Score=65.28 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=38.4
Q ss_pred CCCCchhhhHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcCh
Q psy11489 340 AQAPPEVRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANP 388 (433)
Q Consensus 340 ~~~~pe~~y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~P 388 (433)
...+|+++++ ++.|.+||| ++...|+|+...+.+.+.+.+.|++++
T Consensus 124 i~~tpee~ea--I~rL~~mGF-~r~~viqA~~ac~knee~Aan~L~~~~ 169 (171)
T 2qsf_X 124 VDYTPEDDQA--ISRLCELGF-ERDLVIQVYFACDKNEEAAANILFSDH 169 (171)
T ss_dssp CCCCHHHHHH--HHHHHTTTC-CHHHHHHHHHHTTTCHHHHHHHHTTC-
T ss_pred CCCCccHHHH--HHHHHHcCC-CHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 3456777655 899999998 788889999999999999999998763
No 120
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.16 E-value=0.00053 Score=59.37 Aligned_cols=65 Identities=11% Similarity=0.167 Sum_probs=53.9
Q ss_pred EEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcC-------------------------------------CeEEE
Q psy11489 14 TIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPE-------------------------------------QLCLI 55 (433)
Q Consensus 14 ~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~-------------------------------------~qrLI 55 (433)
.|+|+.+++ ..++.|+.+.||.+++..|+.+.||+.. ++||-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 688999876 6899999999999999999999998754 33332
Q ss_pred e--CCeecCCCCCcccCCCCCCCeE
Q psy11489 56 F--AGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 56 f--~GkiLkD~~tLs~~gI~dg~tV 78 (433)
. .+..|.++.||.++||.++++|
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tl 117 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETL 117 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEE
Confidence 2 2468877889999999999999
No 121
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.11 E-value=0.0013 Score=53.50 Aligned_cols=67 Identities=10% Similarity=0.176 Sum_probs=61.1
Q ss_pred eEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
-|.|+|-..+. ++.|.|.++.++.++-++..+++++++++-.|.|++|.|+=+..++-.||-+|+++
T Consensus 9 ~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkL 76 (90)
T 2al3_A 9 GSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKL 76 (90)
T ss_dssp -CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEE
T ss_pred ccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEE
Confidence 35888888764 89999999999999999999999999999999999999977779999999999999
No 122
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.84 E-value=0.011 Score=49.53 Aligned_cols=69 Identities=13% Similarity=0.225 Sum_probs=58.1
Q ss_pred CceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE--eCCeecC--C-CCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLI--FAGKIMK--D-HENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI--f~GkiLk--D-~~tLs~~gI~dg~tV 78 (433)
....+|.||.+++ ++.-.+..++||.+|++.|....+.+.....|+ |--|.|. | +.||.++|+....+|
T Consensus 11 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L 85 (109)
T 2dzk_A 11 STIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASV 85 (109)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEE
Confidence 4568999999875 678889999999999999998877777778887 6678887 3 359999999999888
No 123
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.59 E-value=0.0011 Score=47.69 Aligned_cols=41 Identities=15% Similarity=0.328 Sum_probs=37.0
Q ss_pred hhhHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcC
Q psy11489 346 VRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMAN 387 (433)
Q Consensus 346 ~~y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~ 387 (433)
..|...+++|.+||| +++..+.|+..++++++.|+++|+++
T Consensus 6 ~~~~~~i~~L~~MGF-~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 6 SEYETMLTEIMSMGY-ERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHHTTC-CHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred ccCHHHHHHHHHcCC-CHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 357889999999999 88889999999999999999999874
No 124
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.52 E-value=0.018 Score=45.67 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=56.3
Q ss_pred CceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE--eCCeecC--C-CCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLI--FAGKIMK--D-HENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI--f~GkiLk--D-~~tLs~~gI~dg~tV 78 (433)
....+|.||.+++ .+.-.+..++||.+|+..|.. .+.+....+|+ |-.|.|. | +.||.++|+....+|
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L 78 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETL 78 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEE
Confidence 4567999999876 566778899999999999987 56777888998 6678884 3 459999999999888
No 125
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.46 E-value=0.013 Score=49.42 Aligned_cols=70 Identities=20% Similarity=0.373 Sum_probs=51.0
Q ss_pred CCceEEEEEEcCC---CeEEEEeCCCCcHHHHHHHHHHhh--CCC------cCCeEEEe----CCeecCCCC--------
Q psy11489 9 EKKLITIVVKTPK---EKQNIEIEEDASVTDFKEAVAKKF--NAL------PEQLCLIF----AGKIMKDHE-------- 65 (433)
Q Consensus 9 ~~~~i~V~VKt~~---~~~~i~V~~~~TV~~LK~~I~~~~--~ip------~~~qrLIf----~GkiLkD~~-------- 65 (433)
+-+.++|+|-..+ +.+.+.|-.-+||.++|++|-..+ ++| ++++.|-| .|++|.|.+
T Consensus 8 e~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~ 87 (111)
T 4e71_A 8 EYAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGR 87 (111)
T ss_dssp CCCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---
T ss_pred eeEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCc
Confidence 4566777776542 368888988999999999997553 333 45677776 356888743
Q ss_pred -----CcccCCCCCCCeE
Q psy11489 66 -----NLSNHNMKDGLTS 78 (433)
Q Consensus 66 -----tLs~~gI~dg~tV 78 (433)
||..|+|.||.+|
T Consensus 88 wkrLNTL~HY~V~dgatl 105 (111)
T 4e71_A 88 WKRVNTLMHYNVRDGATL 105 (111)
T ss_dssp CCCCCBHHHHTCCTTCEE
T ss_pred ceEecchhhcCCCCCCEE
Confidence 6888999999999
No 126
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.19 E-value=0.024 Score=48.57 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=56.9
Q ss_pred CceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE--eCCeec--CC-CCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLI--FAGKIM--KD-HENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI--f~GkiL--kD-~~tLs~~gI~dg~tV 78 (433)
...++|.||.+++ ++.-.+..++||.+|...|... +.+....+|+ |-.|.| .| +.||.++|+....+|
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~L 114 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETV 114 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEE
Confidence 4578999999875 6777888999999999999876 7777788887 668989 44 459999999998887
No 127
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=96.14 E-value=0.022 Score=49.65 Aligned_cols=70 Identities=20% Similarity=0.349 Sum_probs=51.3
Q ss_pred CCceEEEEEEcC-------CCeEEEEeCCCCcHHHHHHHHHHhh--CCC------cCCeEEEe----CCe-ecCCCC---
Q psy11489 9 EKKLITIVVKTP-------KEKQNIEIEEDASVTDFKEAVAKKF--NAL------PEQLCLIF----AGK-IMKDHE--- 65 (433)
Q Consensus 9 ~~~~i~V~VKt~-------~~~~~i~V~~~~TV~~LK~~I~~~~--~ip------~~~qrLIf----~Gk-iLkD~~--- 65 (433)
+-+.++|.|-.. .+.+.|.|-.-+||.++|++|-..+ ++| ++++-|-+ .|+ +|.|.+
T Consensus 21 ey~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS 100 (138)
T 2r2o_A 21 EYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTS 100 (138)
T ss_dssp -CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTC
T ss_pred eeEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcc
Confidence 456677777553 1358899999999999999997654 443 34666665 344 588763
Q ss_pred ----------CcccCCCCCCCeE
Q psy11489 66 ----------NLSNHNMKDGLTS 78 (433)
Q Consensus 66 ----------tLs~~gI~dg~tV 78 (433)
||..|+|.||.+|
T Consensus 101 ~~~~~wkrLNTL~HY~V~Dga~l 123 (138)
T 2r2o_A 101 EVQGLWRRLNTLQHYKVPDGATV 123 (138)
T ss_dssp CEETTEEECCBHHHHTCCTTCEE
T ss_pred cccCCceeecchhccCCCCCCEE
Confidence 7899999999999
No 128
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.95 E-value=0.0072 Score=47.21 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=36.4
Q ss_pred hhhHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcC
Q psy11489 346 VRYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMAN 387 (433)
Q Consensus 346 ~~y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~ 387 (433)
..|...+++|.+||| +++..+.||...+++++.|+++|+++
T Consensus 27 ~~~ee~I~~L~eMGF-~r~~a~~AL~~~~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 27 AASEEQIQKLVAMGF-DRTQVEVALAAADDDLTVAVEILMSQ 67 (73)
T ss_dssp CCCHHHHHHHHTTTC-CHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred cccHHHHHHHHHcCC-CHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 346789999999998 67888999999999999999999875
No 129
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=95.89 E-value=0.015 Score=43.82 Aligned_cols=24 Identities=25% Similarity=0.599 Sum_probs=19.9
Q ss_pred HHHHh-cCChHHHhhhcCHHHHHHH
Q psy11489 172 QFLQQ-MQNPEIQGMMANPEALSAI 195 (433)
Q Consensus 172 ~~~~q-m~nP~~q~ll~NP~~l~~~ 195 (433)
+.++. ++||.++.+|+||+++..+
T Consensus 3 e~~~kl~~dPe~~~~m~dP~~~~~l 27 (62)
T 2lnm_A 3 EVISKIMENPDVAMAFQNPRVQAAL 27 (62)
T ss_dssp HHHHHHTTSHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHcChHHHHHcCCHHHHHHH
Confidence 44555 8999999999999998877
No 130
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.66 E-value=0.0038 Score=44.34 Aligned_cols=40 Identities=28% Similarity=0.458 Sum_probs=34.0
Q ss_pred hhHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcCh
Q psy11489 347 RYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANP 388 (433)
Q Consensus 347 ~y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~P 388 (433)
.+...+++|.+|||.. +....|+..++ +++.|+++|+++|
T Consensus 8 ~~~~~v~~L~~MGF~~-~~a~~AL~~~~-n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 8 VNQQQLQQLMDMGFTR-EHAMEALLNTS-TMEQATEYLLTHP 47 (47)
T ss_dssp SCHHHHHHHHHHHCCH-HHHHHHHHHSC-SHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHcCCCH-HHHHHHHHHcC-CHHHHHHHHHcCC
Confidence 3568899999999976 67788888885 9999999999865
No 131
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=95.52 E-value=0.0059 Score=42.44 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=32.7
Q ss_pred HHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcC
Q psy11489 350 SQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMAN 387 (433)
Q Consensus 350 ~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~ 387 (433)
..+++|.+|||. ++..++|+..++++++.|+++|+++
T Consensus 6 ~~i~~L~~MGF~-~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 6 LAVEELSGMGFT-EEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHTTTSC-HHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 569999999995 6778999999999999999999864
No 132
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=95.47 E-value=0.095 Score=40.02 Aligned_cols=58 Identities=21% Similarity=0.204 Sum_probs=47.5
Q ss_pred eEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.|+|+|....++.+++++...||.+|.+++ +++.+...+..+|+++..+. -+++||.|
T Consensus 4 ~m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V 61 (70)
T 1ryj_A 4 GMKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDII 61 (70)
T ss_dssp CEEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEE
T ss_pred eEEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEE
Confidence 378888876667788888889999999875 56777888899999987654 68999999
No 133
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.37 E-value=0.13 Score=44.09 Aligned_cols=67 Identities=19% Similarity=0.318 Sum_probs=48.1
Q ss_pred eEEEEEEcC---CCeEEEEeCCCCcHHHHHHHHHHhh--CCC------cCCeEEEe-C---Ce-ecCCC-----------
Q psy11489 12 LITIVVKTP---KEKQNIEIEEDASVTDFKEAVAKKF--NAL------PEQLCLIF-A---GK-IMKDH----------- 64 (433)
Q Consensus 12 ~i~V~VKt~---~~~~~i~V~~~~TV~~LK~~I~~~~--~ip------~~~qrLIf-~---Gk-iLkD~----------- 64 (433)
.++|.|-.. ...+.+.|-.-+||.++|++|-..+ ++| ++++.|-| . |+ +|.|.
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k 83 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK 83 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence 455555432 2368888888999999999997653 333 46788877 3 34 47764
Q ss_pred --CCcccCCCCCCCeE
Q psy11489 65 --ENLSNHNMKDGLTS 78 (433)
Q Consensus 65 --~tLs~~gI~dg~tV 78 (433)
.||..|+|.||.+|
T Consensus 84 rLNTL~HY~V~dgatv 99 (127)
T 3h6n_A 84 KLNTLAHYKIPEGASL 99 (127)
T ss_dssp CCCBTTTTTCCTTCEE
T ss_pred EeccccccCCCCCCEE
Confidence 26899999999999
No 134
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=95.37 E-value=0.043 Score=43.84 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=43.7
Q ss_pred CceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCe
Q psy11489 10 KKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGK 59 (433)
Q Consensus 10 ~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~Gk 59 (433)
+..++|+|... ..+.|.|..+.+..+|+++|++++.++++..+|-|+-+
T Consensus 3 ~~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 3 HMAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp SSCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred CCcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 44578888776 78999999999999999999999999999999999874
No 135
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.30 E-value=0.0054 Score=46.39 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=34.9
Q ss_pred hHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcCh
Q psy11489 348 YRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANP 388 (433)
Q Consensus 348 y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~P 388 (433)
+...|++|.+|||. ++..+.|+..++++++.|+++|++++
T Consensus 9 ~~~~v~~L~~MGF~-~~~a~~AL~~t~~nve~A~e~L~~~~ 48 (63)
T 2dak_A 9 PEDCVTTIVSMGFS-RDQALKALRATNNSLERAVDWIFSHI 48 (63)
T ss_dssp CHHHHHHHHHHTCC-HHHHHHHHHHTTSCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCC-HHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 34789999999995 78889999999999999999998753
No 136
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.26 E-value=0.12 Score=43.02 Aligned_cols=68 Identities=9% Similarity=0.115 Sum_probs=55.2
Q ss_pred CceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE--eCCeecC-C-CCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLI--FAGKIMK-D-HENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI--f~GkiLk-D-~~tLs~~gI~dg~tV 78 (433)
...++|.||.+++ ++.-.+..++||.+|...|..+ +......+|+ |-.|.|. | +.||.++||....+|
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L 93 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVL 93 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEE
Confidence 4579999999875 6667788899999999999865 4556678887 6678887 3 359999999998888
No 137
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=95.18 E-value=0.077 Score=45.00 Aligned_cols=70 Identities=20% Similarity=0.377 Sum_probs=50.3
Q ss_pred CCceEEEEEEcCC----CeEEEEeCCCCcHHHHHHHHHHhh--CCC------cCCeEEEe-CC---e-ecCCC-------
Q psy11489 9 EKKLITIVVKTPK----EKQNIEIEEDASVTDFKEAVAKKF--NAL------PEQLCLIF-AG---K-IMKDH------- 64 (433)
Q Consensus 9 ~~~~i~V~VKt~~----~~~~i~V~~~~TV~~LK~~I~~~~--~ip------~~~qrLIf-~G---k-iLkD~------- 64 (433)
+-+.++|+|-... ..+.|.|-.-+||.++|++|-..+ +.| ++++.|-| .| + +|.|.
T Consensus 10 e~~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~ 89 (117)
T 4e74_A 10 DYKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIE 89 (117)
T ss_dssp CCCEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC-
T ss_pred ccEEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEec
Confidence 4566777776532 248888888999999999997553 333 45677776 34 3 57764
Q ss_pred ------CCcccCCCCCCCeE
Q psy11489 65 ------ENLSNHNMKDGLTS 78 (433)
Q Consensus 65 ------~tLs~~gI~dg~tV 78 (433)
.||..|+|.||.+|
T Consensus 90 ~~wkrLNTL~HY~V~dgatl 109 (117)
T 4e74_A 90 NDWKRLNTLAHYQVPDGSVV 109 (117)
T ss_dssp --CCCCCBHHHHTCCTTCEE
T ss_pred CcceEeccccccCCCCCCEE
Confidence 25788999999999
No 138
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=95.09 E-value=0.012 Score=39.82 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=31.7
Q ss_pred hHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhh
Q psy11489 348 YRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMM 385 (433)
Q Consensus 348 y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~ 385 (433)
|.+.+++|.+|||. ++....|+..++++++.|+++|+
T Consensus 4 ~~~~i~~L~~mGf~-~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 4 LNSKIAQLVSMGFD-PLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHHTTCC-HHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHcCCCHHHHHHHHC
Confidence 56789999999996 45668999999999999998874
No 139
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=94.98 E-value=0.038 Score=47.44 Aligned_cols=69 Identities=12% Similarity=0.245 Sum_probs=54.9
Q ss_pred CceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhh-CCCcCCeEEE--eCCeecCCC-CCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKF-NALPEQLCLI--FAGKIMKDH-ENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~-~ip~~~qrLI--f~GkiLkD~-~tLs~~gI~dg~tV 78 (433)
....+|.||.+++ ++.-.+..++||.+|++.|.... +......+|+ |-.|.|.|+ .||.++|+....+|
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 3468999999865 67778899999999999998863 4555677777 678999875 59999999985544
No 140
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=94.88 E-value=0.011 Score=46.11 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=33.9
Q ss_pred HHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcCh
Q psy11489 350 SQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANP 388 (433)
Q Consensus 350 ~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~P 388 (433)
..+++|.+||| ++...+.|+..++++++.|+++|++++
T Consensus 31 ~~v~~L~~MGF-~~~~a~~AL~~t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 31 SSVDTLLSFGF-AEDVARKALKASGGDIEKATDWVFNNS 68 (73)
T ss_dssp HHHHHHHHHTC-CHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 67999999999 567778999999999999999998765
No 141
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.61 E-value=0.012 Score=44.49 Aligned_cols=37 Identities=22% Similarity=0.464 Sum_probs=32.4
Q ss_pred HHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcC
Q psy11489 350 SQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMAN 387 (433)
Q Consensus 350 ~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~ 387 (433)
..|++|.+||| +++..+.|+..++++++.|+++|+++
T Consensus 11 ~~I~~L~~MGF-~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 11 KALKHITEMGF-SKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHTTTC-CHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 57999999999 55667899999999999999999865
No 142
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=94.50 E-value=0.0081 Score=46.67 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=19.8
Q ss_pred HHHHh-cCChHHHhhhcCHHHHHHH
Q psy11489 172 QFLQQ-MQNPEIQGMMANPEALSAI 195 (433)
Q Consensus 172 ~~~~q-m~nP~~q~ll~NP~~l~~~ 195 (433)
+.+.. |+||.++.+|+||+++..+
T Consensus 11 e~~~~~m~dPEi~~im~DP~~~~~l 35 (71)
T 2llw_A 11 ETYQRAMKDPEVAAIMQDPVMQSIL 35 (71)
T ss_dssp HHHHHHHHSHHHHHHHTCTHHHHHH
T ss_pred HHHHHHhcCHHHHHHhCCHHHHHHH
Confidence 44555 8999999999999888877
No 143
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.44 E-value=0.012 Score=47.06 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=35.1
Q ss_pred hHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcCh
Q psy11489 348 YRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANP 388 (433)
Q Consensus 348 y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~P 388 (433)
+...+++|.+||| +++.-+.|+..++++++.|+++|++++
T Consensus 29 ~ee~I~~Lv~MGF-~~~~A~~AL~~t~gdve~A~e~L~sh~ 68 (83)
T 1veg_A 29 SQESINQLVYMGF-DTVVAEAALRVFGGNVQLAAQTLAHHG 68 (83)
T ss_dssp CHHHHHHHHHHSC-CHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCC-CHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4578999999999 677779999999999999999999843
No 144
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.21 E-value=0.02 Score=43.46 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=33.2
Q ss_pred HHHHHhhhcCCCchhhhhhccccCCc-chHHHHHhhhcCh
Q psy11489 350 SQLDQLTAMGFVNREANLQGSLFGNA-GMQSMMQQMMANP 388 (433)
Q Consensus 350 ~QL~qL~~mGf~d~~~Nl~al~~~~g-~~~~a~~~l~~~P 388 (433)
..+++|.+|||. +...+.|+..+++ +++.|+++|++.+
T Consensus 21 ~~i~~L~~MGF~-~~~a~~AL~~t~~~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 21 SALDVLLSMGFP-RARAQKALASTGGRSVQTACDWLFSHS 59 (64)
T ss_dssp CHHHHHHHHTCC-HHHHHHHHHHTTTSCHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 579999999995 5778999999998 9999999998764
No 145
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=94.19 E-value=0.012 Score=44.29 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=31.9
Q ss_pred cccCccccccCCCHHHHHHHHHHhhChHHHHHHHHHh
Q psy11489 215 NFRNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQ 251 (433)
Q Consensus 215 ~~~nPel~~~l~nPe~lrq~~~~~~nP~~~qe~~r~~ 251 (433)
+.+|||+..+|+||++++.+-++.+||+.+++.+.+.
T Consensus 8 l~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP 44 (62)
T 2lnm_A 8 IMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDK 44 (62)
T ss_dssp HTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCH
T ss_pred HHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhCh
Confidence 4578999999999999999999999999998877543
No 146
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=94.08 E-value=0.047 Score=42.30 Aligned_cols=41 Identities=32% Similarity=0.535 Sum_probs=29.6
Q ss_pred HHHHHhhhcChHHHHhccCcHHHHHHHHHHhcCcHHHHhhhh
Q psy11489 378 QSMMQQMMANPQLMQNMMQAPYMQSMLQAMSADPSIAQRVIG 419 (433)
Q Consensus 378 ~~a~~~l~~~P~~~~~m~~~P~~~~mmq~l~sNP~~~~q~~~ 419 (433)
+..+.+++.||+ ++..|++|.++++++.+++||+.+...+.
T Consensus 10 ee~~~~~m~dPE-i~~im~DP~~~~~lq~~~~NP~~~~k~~~ 50 (71)
T 2llw_A 10 EETYQRAMKDPE-VAAIMQDPVMQSILQQAQQNPAALQEHMK 50 (71)
T ss_dssp HHHHHHHHHSHH-HHHHHTCTHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHhcCHH-HHHHhCCHHHHHHHHHHHHCHHHHHHHHh
Confidence 334556677776 44567888888888888888888877763
No 147
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.02 E-value=0.21 Score=46.99 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=46.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHhhCCCcC-CeEEEe-C----CeecCCC-CCcccCCCCCCCeE
Q psy11489 24 QNIEIEEDASVTDFKEAVAKKFNALPE-QLCLIF-A----GKIMKDH-ENLSNHNMKDGLTS 78 (433)
Q Consensus 24 ~~i~V~~~~TV~~LK~~I~~~~~ip~~-~qrLIf-~----GkiLkD~-~tLs~~gI~dg~tV 78 (433)
+++.++..+||.+|++.+.+.++++.+ +.||-. . -..|.|. .||.+++|.+|..|
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~i 215 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVL 215 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEE
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEE
Confidence 567779999999999999999999997 688763 2 2367765 69999999999998
No 148
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.85 E-value=0.13 Score=41.05 Aligned_cols=65 Identities=15% Similarity=0.282 Sum_probs=56.6
Q ss_pred CceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeC---CeecCCCCCcccCCCCC
Q psy11489 10 KKLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFA---GKIMKDHENLSNHNMKD 74 (433)
Q Consensus 10 ~~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~---GkiLkD~~tLs~~gI~d 74 (433)
.+++++.|...+ .|..+.|.+..++.+|--.|.+++.++++...|.-. +..|+=+++|.+|||++
T Consensus 8 E~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 8 EKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred ccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 477999999986 578889999999999999999999999999988743 44777778999999987
No 149
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=93.66 E-value=0.22 Score=49.71 Aligned_cols=66 Identities=14% Similarity=0.260 Sum_probs=54.7
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhC----CCcCCeEEEe------CCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFN----ALPEQLCLIF------AGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~----ip~~~qrLIf------~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+.++|...+-..++.++++.||.+....|.+++. .+.++--|.. +|+-|++..||+.|++++|+.|
T Consensus 4 ~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l 79 (371)
T 3ivf_A 4 LSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTM 79 (371)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEE
T ss_pred EEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCcee
Confidence 4555555555788999999999999999988874 3677777776 6788999999999999999999
No 150
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=93.62 E-value=0.4 Score=41.03 Aligned_cols=70 Identities=14% Similarity=0.218 Sum_probs=46.6
Q ss_pred CCceEEEEEEc---C-C------CeEEEEeCCCCcHHHHHHHHHHh----hCCCc----CCeEEEe-CC---eecCCC--
Q psy11489 9 EKKLITIVVKT---P-K------EKQNIEIEEDASVTDFKEAVAKK----FNALP----EQLCLIF-AG---KIMKDH-- 64 (433)
Q Consensus 9 ~~~~i~V~VKt---~-~------~~~~i~V~~~~TV~~LK~~I~~~----~~ip~----~~qrLIf-~G---kiLkD~-- 64 (433)
+-+.+++.|-. . + ..+.|.|-.-+||.++|++|-.. .++|. +++.|-| .| ++|.|.
T Consensus 16 ey~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~ 95 (126)
T 3kuz_A 16 FQGTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDS 95 (126)
T ss_dssp -CCEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCT
T ss_pred eeEEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCC
Confidence 34566777665 2 1 24788888899999999999533 25543 4566655 22 345443
Q ss_pred ------------CCcccCCCCCCCeE
Q psy11489 65 ------------ENLSNHNMKDGLTS 78 (433)
Q Consensus 65 ------------~tLs~~gI~dg~tV 78 (433)
.||..|+|.||.+|
T Consensus 96 tS~~~e~~wkrLNTL~HY~V~Dgatl 121 (126)
T 3kuz_A 96 SSVILEDGITKLNTIGHYEISNGSTI 121 (126)
T ss_dssp TCCBCTTSCBCCCBTGGGTCCTTCEE
T ss_pred cceEecCCeeEeccccccCCCCCCEE
Confidence 25777999999999
No 151
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=93.35 E-value=0.27 Score=38.11 Aligned_cols=56 Identities=11% Similarity=0.319 Sum_probs=44.1
Q ss_pred EEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||..+. ...++++...||.+|-+ +++++++...+..+|+++..++ +.+||+|
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~V 57 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRV 57 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCE
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEE
Confidence 5778887654 56689999999998865 4799999998889999887655 3358888
No 152
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=93.27 E-value=0.55 Score=37.92 Aligned_cols=62 Identities=23% Similarity=0.345 Sum_probs=45.4
Q ss_pred eEEEEEEcCC--------CeEEEEeCCCCcHHHHHHHHHHhhC-C----------CcCCeEEEeCCeecCCCCCcccCCC
Q psy11489 12 LITIVVKTPK--------EKQNIEIEEDASVTDFKEAVAKKFN-A----------LPEQLCLIFAGKIMKDHENLSNHNM 72 (433)
Q Consensus 12 ~i~V~VKt~~--------~~~~i~V~~~~TV~~LK~~I~~~~~-i----------p~~~qrLIf~GkiLkD~~tLs~~gI 72 (433)
.++|+||.-. ...+++++...||.+|.+.+..++. + ......+..+|+.... ++-|
T Consensus 9 ~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L 83 (98)
T 1vjk_A 9 SVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEEL 83 (98)
T ss_dssp CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBC
T ss_pred cEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCC
Confidence 4788888632 2467888888999999999987751 1 1244667788887753 5679
Q ss_pred CCCCeE
Q psy11489 73 KDGLTS 78 (433)
Q Consensus 73 ~dg~tV 78 (433)
++||.|
T Consensus 84 ~dGDeV 89 (98)
T 1vjk_A 84 KDGDVV 89 (98)
T ss_dssp CTTCEE
T ss_pred CCCCEE
Confidence 999999
No 153
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.10 E-value=0.27 Score=45.73 Aligned_cols=55 Identities=9% Similarity=0.224 Sum_probs=46.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHhhCCCcC-CeEEE--e-CC--eecCCC-CCcccCCCCCCCeE
Q psy11489 24 QNIEIEEDASVTDFKEAVAKKFNALPE-QLCLI--F-AG--KIMKDH-ENLSNHNMKDGLTS 78 (433)
Q Consensus 24 ~~i~V~~~~TV~~LK~~I~~~~~ip~~-~qrLI--f-~G--kiLkD~-~tLs~~gI~dg~tV 78 (433)
+++.++..+||.+|++.+.+.++++.+ +.||- | .+ ..|.|. .||.+++|.+|..|
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~i 203 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVL 203 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEE
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEE
Confidence 667889999999999999999999987 68875 3 23 266665 49999999999998
No 154
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=92.97 E-value=0.49 Score=50.47 Aligned_cols=70 Identities=20% Similarity=0.346 Sum_probs=50.8
Q ss_pred CCceEEEEEEcC-C------CeEEEEeCCCCcHHHHHHHHHHhh--CCC------cCCeEEEe----CCe-ecCCCC---
Q psy11489 9 EKKLITIVVKTP-K------EKQNIEIEEDASVTDFKEAVAKKF--NAL------PEQLCLIF----AGK-IMKDHE--- 65 (433)
Q Consensus 9 ~~~~i~V~VKt~-~------~~~~i~V~~~~TV~~LK~~I~~~~--~ip------~~~qrLIf----~Gk-iLkD~~--- 65 (433)
+-+.++|+|-.. + ..+.|.|-.-+||.++|++|-... ++| ++++.|-+ .|+ +|.|.+
T Consensus 254 e~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts 333 (644)
T 3hm6_X 254 EYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTS 333 (644)
T ss_dssp CCCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTC
T ss_pred cceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccc
Confidence 345677877653 1 248889989999999999997442 433 35667766 244 577754
Q ss_pred ----------CcccCCCCCCCeE
Q psy11489 66 ----------NLSNHNMKDGLTS 78 (433)
Q Consensus 66 ----------tLs~~gI~dg~tV 78 (433)
||..|+|.||.+|
T Consensus 334 ~~~~~wkrLNTL~HY~V~dga~v 356 (644)
T 3hm6_X 334 EVQGLWRRLNTLQHYKVPDGATV 356 (644)
T ss_dssp CEETTEEECCBTTTTTCCTTCEE
T ss_pred eecCcceeecchhhcCCCCCcEE
Confidence 7999999999999
No 155
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=92.97 E-value=0.44 Score=38.41 Aligned_cols=50 Identities=10% Similarity=0.042 Sum_probs=42.3
Q ss_pred CceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCC-eEEEeCCe
Q psy11489 10 KKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQ-LCLIFAGK 59 (433)
Q Consensus 10 ~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~-qrLIf~Gk 59 (433)
+..|+|++...++.+.+.|+++.+..+|.++|.+.+++..++ +.|-|+.-
T Consensus 4 ~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 4 GSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp SSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred CCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 455888888888888999999999999999999999987654 78877753
No 156
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.71 E-value=0.031 Score=43.63 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=32.8
Q ss_pred HHHHHhhhcCCCchhhhhhccccCCc-chHHHHHhhhcC
Q psy11489 350 SQLDQLTAMGFVNREANLQGSLFGNA-GMQSMMQQMMAN 387 (433)
Q Consensus 350 ~QL~qL~~mGf~d~~~Nl~al~~~~g-~~~~a~~~l~~~ 387 (433)
..|++|.+|||. +....+|+..+++ +++.|+++|++.
T Consensus 11 ~~v~~L~~MGF~-~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 11 SVIIQLVEMGFP-MDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp HHHHHHHHHSCC-HHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 679999999996 6888999999986 899999999874
No 157
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.63 E-value=0.048 Score=43.55 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=34.8
Q ss_pred hhHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcC
Q psy11489 347 RYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMAN 387 (433)
Q Consensus 347 ~y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~ 387 (433)
.....|++|.+|||.- .....|+..++++++.|+++|+++
T Consensus 28 ~~e~~i~~L~~MGF~~-~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 28 VDEAALRQLTEMGFPE-NRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp CCHHHHHHHHHHTCCH-HHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred CCHHHHHHHHHcCCCH-HHHHHHHHHhCCCHHHHHHHHHHC
Confidence 3557899999999986 677899999999999999999875
No 158
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=92.33 E-value=0.36 Score=36.94 Aligned_cols=61 Identities=13% Similarity=0.215 Sum_probs=41.9
Q ss_pred EEEEEEcCCC--eEEEEeCCCCcHHHHHHHHHHhhCCCc--CCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKE--KQNIEIEEDASVTDFKEAVAKKFNALP--EQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~--~~~i~V~~~~TV~~LK~~I~~~~~ip~--~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|+|+||.... ..++++ ...||.+|++.+..+.++.. ....+.-+|+.+.+. +.-+++||.|
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~----~~~l~~gDeV 65 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNL----NTPLKDGDVI 65 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCT----TCCCCTTCEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCC----CcCCCCCCEE
Confidence 4677887432 234666 56899999999987543322 456677788876543 4569999999
No 159
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.28 E-value=0.11 Score=41.73 Aligned_cols=45 Identities=24% Similarity=0.339 Sum_probs=36.9
Q ss_pred Cchhhh-HHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcCh
Q psy11489 343 PPEVRY-RSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANP 388 (433)
Q Consensus 343 ~pe~~y-~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~P 388 (433)
+++..+ ...+++|.+||| +++..+.|+..++.+++.|+++|++.+
T Consensus 15 ~~~~~~n~~~I~qL~~MGF-~~~~a~~AL~~~n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 15 QDEAWIMSRLIKQLTDMGF-PREPAEEALKSNNMNLDQAMSALLEKK 60 (85)
T ss_dssp CCHHHHHHHHHHHHHHHTC-CHHHHHHHHHHTTSCHHHHHHHHHTTS
T ss_pred CCccccCHHHHHHHHHcCC-CHHHHHHHHHHcCCCHHHHHHHHHHCc
Confidence 444444 678999999999 556778899888999999999998764
No 160
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=92.10 E-value=0.85 Score=48.56 Aligned_cols=70 Identities=19% Similarity=0.322 Sum_probs=51.4
Q ss_pred CCceEEEEEEcCC----CeEEEEeCCCCcHHHHHHHHHHhh--CC------CcCCeEEEe----CCe-ecCCC-------
Q psy11489 9 EKKLITIVVKTPK----EKQNIEIEEDASVTDFKEAVAKKF--NA------LPEQLCLIF----AGK-IMKDH------- 64 (433)
Q Consensus 9 ~~~~i~V~VKt~~----~~~~i~V~~~~TV~~LK~~I~~~~--~i------p~~~qrLIf----~Gk-iLkD~------- 64 (433)
+-+.++|+|-..+ ..+.|.|-.-+||.++|++|-... ++ .++++.|-+ .|+ +|.|.
T Consensus 230 e~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~ 309 (627)
T 3ig3_A 230 DYKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIE 309 (627)
T ss_dssp CCCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEE
T ss_pred cceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCcccccc
Confidence 4556788887542 358889989999999999997543 33 346777765 234 57764
Q ss_pred ------CCcccCCCCCCCeE
Q psy11489 65 ------ENLSNHNMKDGLTS 78 (433)
Q Consensus 65 ------~tLs~~gI~dg~tV 78 (433)
.||..|+|.||.+|
T Consensus 310 ~~wkrLNTL~HY~V~Dga~v 329 (627)
T 3ig3_A 310 CDWKRVNSLAHYQVTDGSLV 329 (627)
T ss_dssp TTEEECCBTTTTTCCTTCEE
T ss_pred CceeEecchhhcCCCCCceE
Confidence 26889999999999
No 161
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=91.48 E-value=1.1 Score=35.13 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=38.4
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhhC-CC----------cCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKFN-AL----------PEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~~-ip----------~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
...+++++...||.+|++.+..++. +. ....++.-+|+...+ ++-+++||.|
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV 80 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDEL 80 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEE
Confidence 3577888888999999999988762 10 012567778887764 5568999999
No 162
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=90.67 E-value=0.056 Score=40.94 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=32.0
Q ss_pred HHHHHhhhcCCCchhhhhhccccC-CcchHHHHHhhhcC
Q psy11489 350 SQLDQLTAMGFVNREANLQGSLFG-NAGMQSMMQQMMAN 387 (433)
Q Consensus 350 ~QL~qL~~mGf~d~~~Nl~al~~~-~g~~~~a~~~l~~~ 387 (433)
..|++|.+|||.- .....|+..+ +++++.|+++|++.
T Consensus 11 ~~v~~L~~MGF~~-~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 11 TALESLIEMGFPR-GRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp CHHHHHHTTTCCH-HHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCH-HHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 5789999999985 6678889888 69999999999875
No 163
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.58 E-value=0.077 Score=40.21 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=31.5
Q ss_pred HHHHHhhhcCCCchhhhhhccccCCc-chHHHHHhhhcC
Q psy11489 350 SQLDQLTAMGFVNREANLQGSLFGNA-GMQSMMQQMMAN 387 (433)
Q Consensus 350 ~QL~qL~~mGf~d~~~Nl~al~~~~g-~~~~a~~~l~~~ 387 (433)
.-|++|.+|||.- .+.++|+..++. +++.|+++|+++
T Consensus 11 ~~v~~L~~MGF~~-~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 11 SLLEPLLAMGFPV-HTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp SSHHHHHHTSCCH-HHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCH-HHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 4689999999976 777999988876 999999999864
No 164
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.49 E-value=0.035 Score=41.64 Aligned_cols=39 Identities=10% Similarity=0.259 Sum_probs=33.9
Q ss_pred HHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcChH
Q psy11489 350 SQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANPQ 389 (433)
Q Consensus 350 ~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~P~ 389 (433)
.-++.|-+|||....+ ..|+..++++++.++++|+++|+
T Consensus 21 e~V~~LvsMGFs~~qA-~kALKat~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 21 QCVETVVNMGYSYECV-LRAMKKKGENIEQILDYLFAHSG 59 (63)
T ss_dssp HHHHHHHHHHCCHHHH-HHHHHHHCSCHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCHHHH-HHHHHHcCCCHHHHHHHHHhCCC
Confidence 4589999999998776 67799999999999999998764
No 165
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=90.40 E-value=1.1 Score=35.64 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=37.5
Q ss_pred ceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE-eCC
Q psy11489 11 KLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLI-FAG 58 (433)
Q Consensus 11 ~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI-f~G 58 (433)
+.|+|+|-..++.|.|.|+.+.+..+||.+|.++..+. ...|+ |++
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ykd 57 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKLF 57 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECCS
T ss_pred CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEecC
Confidence 55788887778899999999999999999999999883 44444 443
No 166
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=90.06 E-value=0.095 Score=40.44 Aligned_cols=48 Identities=21% Similarity=0.534 Sum_probs=33.6
Q ss_pred HHHHHh-cCChHHHhhhcCHHHHHHHHHHHHHHHHHHhhCCcccccccCccccc-cCCCHHHHHHH
Q psy11489 171 PQFLQQ-MQNPEIQGMMANPEALSAIQQIQAGIEQLRTAAPGMEWNFRNPEINH-MLNNPELLRQT 234 (433)
Q Consensus 171 P~~~~q-m~nP~~q~ll~NP~~l~~~~q~~~~~~~~i~~nP~l~~~~~nPel~~-~l~nPe~lrq~ 234 (433)
|++++. .+||.++.+|+||+++..+-+ |.+||+- +.. .++||.++.-+
T Consensus 13 p~~~~kl~~dP~t~~~~~DP~~~~~lq~--------i~~NP~~--------i~~~~~~dPrv~~~l 62 (71)
T 2llv_A 13 PNLIENLKKNPKTSEMMKDPQLVAKLIG--------YKQNPQA--------IGQDLFTDPRLMTIM 62 (71)
T ss_dssp SSCHHHHHHSSTTHHHHHSCTHHHHHHH--------HHHSCTT--------HHHHTTTCHHHHHHH
T ss_pred hHHHHHHHcChHHHHHhcCHHHHHHHHH--------HHHCHHH--------HHHHHhhCcHHHHHH
Confidence 555556 789999999999999888743 6777742 334 56677766543
No 167
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=89.82 E-value=0.07 Score=48.21 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=12.0
Q ss_pred CcHHHHHHHHHHhcCcHHHHhhhh
Q psy11489 396 QAPYMQSMLQAMSADPSIAQRVIG 419 (433)
Q Consensus 396 ~~P~~~~mmq~l~sNP~~~~q~~~ 419 (433)
++|.+++|.+.+.+||+++..++.
T Consensus 31 ~~Pqf~qlRq~vqqNPqlL~~lLq 54 (171)
T 2qsf_X 31 TVEDLLSLRQVVSGNPEALAPLLE 54 (171)
T ss_dssp CHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred cCHHHHHHHHHHHHCHHHHHHHHH
Confidence 445555555555555554444443
No 168
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=89.42 E-value=0.11 Score=41.49 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=33.0
Q ss_pred hHHHHHHhhhcCCCchhhhhhccccCC-cchHHHHHhhhcC
Q psy11489 348 YRSQLDQLTAMGFVNREANLQGSLFGN-AGMQSMMQQMMAN 387 (433)
Q Consensus 348 y~~QL~qL~~mGf~d~~~Nl~al~~~~-g~~~~a~~~l~~~ 387 (433)
+...+++|.+|||.- ...++|+..++ ++++.|+++|+++
T Consensus 29 ~e~~v~~L~~MGF~~-~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQ-LHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp CHHHHHHHHHHTCCH-HHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCH-HHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 347899999999976 77789988885 7999999999874
No 169
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=87.88 E-value=0.18 Score=42.93 Aligned_cols=39 Identities=21% Similarity=0.403 Sum_probs=34.6
Q ss_pred HHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcCh
Q psy11489 349 RSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANP 388 (433)
Q Consensus 349 ~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~P 388 (433)
...+++|.+|||. +...+.|+..++++++.|+++|++++
T Consensus 79 e~~v~~L~~MGF~-~~~a~~AL~~~~~~~e~A~e~L~~~~ 117 (126)
T 2lbc_A 79 EEIVAIITSMGFQ-RNQAIQALRATNNNLERALDWIFSHP 117 (126)
T ss_dssp HHHHHHHHHHTSC-HHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4679999999997 78889999999999999999998764
No 170
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=87.44 E-value=0.41 Score=34.61 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=32.2
Q ss_pred chhhhHHHHHHhhhcCCCchhhhhhc-cccCCcchHHHHHhh
Q psy11489 344 PEVRYRSQLDQLTAMGFVNREANLQG-SLFGNAGMQSMMQQM 384 (433)
Q Consensus 344 pe~~y~~QL~qL~~mGf~d~~~Nl~a-l~~~~g~~~~a~~~l 384 (433)
+..|-...|.||..|||+|....+.- +..-++++..+++-|
T Consensus 6 ~D~rl~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 6 ADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp SCHHHHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred cChHHHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHh
Confidence 45678899999999999999888643 444578888887755
No 171
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=86.84 E-value=0.055 Score=42.05 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=14.1
Q ss_pred cCHHHHHHHHHHHHHHHHHHhhCCccc-ccccCc
Q psy11489 187 ANPEALSAIQQIQAGIEQLRTAAPGME-WNFRNP 219 (433)
Q Consensus 187 ~NP~~l~~~~q~~~~~~~~i~~nP~l~-~~~~nP 219 (433)
.||+++..+ +++|-.+||++. +|.+||
T Consensus 24 qNP~lL~~l------LqqL~~~NPqL~q~I~~n~ 51 (72)
T 1pve_A 24 QNPSLLPAL------LQQIGRENPQLLQQISQHQ 51 (72)
T ss_dssp TCGGGHHHH------HHHHHTTCHHHHHHHHTTH
T ss_pred HCHHHHHHH------HHHHHhHCHHHHHHHHHCH
Confidence 466666666 444555555554 444433
No 172
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=86.79 E-value=0.086 Score=39.64 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=13.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHhhCCccc-ccccCc
Q psy11489 187 ANPEALSAIQQIQAGIEQLRTAAPGME-WNFRNP 219 (433)
Q Consensus 187 ~NP~~l~~~~q~~~~~~~~i~~nP~l~-~~~~nP 219 (433)
+||+++..+ +++|-.+||++. .+.+||
T Consensus 22 ~NP~~L~~l------Lqql~~~nP~l~~~I~~n~ 49 (61)
T 2f4m_B 22 QNPSLLPAL------LQQIGRENPQLLQQISQHQ 49 (61)
T ss_dssp HCGGGHHHH------HHHHHHHCHHHHHHHHHSH
T ss_pred HCHHHHHHH------HHHHHhHCHHHHHHHHHCH
Confidence 455555555 444455555554 444444
No 173
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=86.30 E-value=1.7 Score=33.28 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=35.7
Q ss_pred eEEEEeCCCCcHHHHHHHHHHhhC-----CCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 23 KQNIEIEEDASVTDFKEAVAKKFN-----ALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 23 ~~~i~V~~~~TV~~LK~~I~~~~~-----ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.++++ ....||.+|++.+..++. ++.....+..+|+...+ +.-+++|+.|
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V 72 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEV 72 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEE
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEE
Confidence 34555 567899999999976531 23345678888988753 4578999999
No 174
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=86.20 E-value=0.099 Score=40.35 Aligned_cols=41 Identities=22% Similarity=0.498 Sum_probs=31.7
Q ss_pred CCccc-ccccCccccccCCCHHHHHHHHHHhhChHHHHH-HHH
Q psy11489 209 APGME-WNFRNPEINHMLNNPELLRQTMEMARNPSMLQE-LMR 249 (433)
Q Consensus 209 nP~l~-~~~~nPel~~~l~nPe~lrq~~~~~~nP~~~qe-~~r 249 (433)
.|.+. .+..||+++.+|.||++++.+-++.+||..++. .+.
T Consensus 12 ~p~~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~ 54 (71)
T 2llv_A 12 DPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFT 54 (71)
T ss_dssp SSSCHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTT
T ss_pred ChHHHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhh
Confidence 34443 445688888899999999888899999998877 553
No 175
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=84.99 E-value=0.75 Score=39.52 Aligned_cols=33 Identities=12% Similarity=0.260 Sum_probs=29.7
Q ss_pred EEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeC
Q psy11489 25 NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFA 57 (433)
Q Consensus 25 ~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~ 57 (433)
.+.|..++||.+||+.|++.+|++++++||-+-
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred eEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 578888999999999999999999999998643
No 176
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=84.75 E-value=0.43 Score=33.74 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=31.8
Q ss_pred HHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcCh
Q psy11489 350 SQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANP 388 (433)
Q Consensus 350 ~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~P 388 (433)
.-+++|.+|||.-. .-++|+...+.+.+.+.++|++++
T Consensus 6 eaI~rL~~mGF~~~-~a~~Al~a~~~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 6 EAIERLKALGFPES-LVIQAYFACEKNENLAANFLLSQN 43 (47)
T ss_dssp HHHTTTTTTTCCHH-HHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred HHHHHHHHcCCCHH-HHHHHHHHcCCCHHHHHHHHHhCc
Confidence 45889999999754 448899999999999999998753
No 177
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=84.61 E-value=1.4 Score=33.52 Aligned_cols=50 Identities=10% Similarity=0.230 Sum_probs=37.5
Q ss_pred eEEEEeCCCCcHHHHHHHHHHhhCCCcCCe--EEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 23 KQNIEIEEDASVTDFKEAVAKKFNALPEQL--CLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 23 ~~~i~V~~~~TV~~LK~~I~~~~~ip~~~q--rLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
..+++++...||.+|.+.+..++. ..+.. .+..+|+....+ .-+++||.|
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V 68 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTV 68 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEE
Confidence 456777778899999999987752 11344 788899988653 578999999
No 178
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=84.58 E-value=4.1 Score=32.49 Aligned_cols=43 Identities=9% Similarity=0.127 Sum_probs=29.3
Q ss_pred eEEEEEEcCCCeEEEEeCC-CCcHHHHHHHHHHhhCCCcCCeEE
Q psy11489 12 LITIVVKTPKEKQNIEIEE-DASVTDFKEAVAKKFNALPEQLCL 54 (433)
Q Consensus 12 ~i~V~VKt~~~~~~i~V~~-~~TV~~LK~~I~~~~~ip~~~qrL 54 (433)
.|..+.|+..+..+|.++. ..+|.+||.+|.++.+.-..+.-|
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL 51 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDL 51 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEE
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccE
Confidence 3455555555666677765 679999999998887665444443
No 179
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=83.42 E-value=1.8 Score=34.49 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=37.0
Q ss_pred EEeCCC-CcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 26 IEIEED-ASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 26 i~V~~~-~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
++++.. .||.+|.+.+ +++.+.+.+..+|+++..+ ...+.-+++||.|
T Consensus 30 ~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~V 78 (87)
T 1tyg_B 30 VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVI 78 (87)
T ss_dssp ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEE
T ss_pred EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEE
Confidence 445666 8999998875 5677788888999988532 4556679999999
No 180
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=82.66 E-value=5.9 Score=31.78 Aligned_cols=33 Identities=15% Similarity=0.373 Sum_probs=24.3
Q ss_pred EEEEEEcC--------C-CeEEEEeC--CCCcHHHHHHHHHHhh
Q psy11489 13 ITIVVKTP--------K-EKQNIEIE--EDASVTDFKEAVAKKF 45 (433)
Q Consensus 13 i~V~VKt~--------~-~~~~i~V~--~~~TV~~LK~~I~~~~ 45 (433)
|+|+||.. + ..++++++ ...||.+|.+.+.+++
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~ 45 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTM 45 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHT
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHC
Confidence 56777741 2 24667776 6789999999999887
No 181
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=82.66 E-value=6 Score=32.65 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=48.4
Q ss_pred CceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE---eCCe--ecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLI---FAGK--IMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI---f~Gk--iLkD~~tLs~~gI~dg~tV 78 (433)
.+.|-..|-..+. -+++.+..+.|+.+++..++++.+...+.++|+ |.|. +|++++.--.-.+.-+..|
T Consensus 7 sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRL 81 (104)
T 1wgy_A 7 GEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRI 81 (104)
T ss_dssp SSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEE
T ss_pred CCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceE
Confidence 3445566666665 578888999999999999999999887778776 6774 6676663333334444555
No 182
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=82.19 E-value=5.3 Score=31.01 Aligned_cols=54 Identities=9% Similarity=0.193 Sum_probs=37.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHhhC------C-----CcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 24 QNIEIEEDASVTDFKEAVAKKFN------A-----LPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 24 ~~i~V~~~~TV~~LK~~I~~~~~------i-----p~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.+++++...||.+|.+.+..++. + ......+..+|+.....+ -.++-+++|+.|
T Consensus 17 ~~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V 81 (90)
T 2g1e_A 17 KEETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKI 81 (90)
T ss_dssp SEEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEE
T ss_pred CEEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEE
Confidence 35567667899999999987751 1 014567788888775322 234569999999
No 183
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=81.65 E-value=0.38 Score=37.27 Aligned_cols=46 Identities=28% Similarity=0.317 Sum_probs=35.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 24 QNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 24 ~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.+++++...||.+|.+.+ +++.+...+..+|+++..+ +-|++||.|
T Consensus 23 ~~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V 68 (77)
T 1rws_A 23 KEIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFV 68 (77)
T ss_dssp CCCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCC
T ss_pred EEEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEE
Confidence 345667778999998765 4667777888999988754 678999999
No 184
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=81.48 E-value=3.2 Score=33.44 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=41.5
Q ss_pred eEEEEEEcCCC------eEEEEeCCCCcHHHHHHHHHHhhC-CCc---------CCe-------EEEeCCeecCCCCCcc
Q psy11489 12 LITIVVKTPKE------KQNIEIEEDASVTDFKEAVAKKFN-ALP---------EQL-------CLIFAGKIMKDHENLS 68 (433)
Q Consensus 12 ~i~V~VKt~~~------~~~i~V~~~~TV~~LK~~I~~~~~-ip~---------~~q-------rLIf~GkiLkD~~tLs 68 (433)
.|+|+||.... +.+++++ ..||.+|.+.+..++. +.. ..+ .+..+|+..+..+ -.
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~~ 80 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-GL 80 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-ST
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-CC
Confidence 46888887531 2244555 6899999999987752 111 123 6778887664332 23
Q ss_pred cCCCCCCCeE
Q psy11489 69 NHNMKDGLTS 78 (433)
Q Consensus 69 ~~gI~dg~tV 78 (433)
++-+++||+|
T Consensus 81 ~~~L~~gD~V 90 (99)
T 2l52_A 81 ETLLKDSDEI 90 (99)
T ss_dssp TSCCCTTEEE
T ss_pred CCCCCCCCEE
Confidence 4568999999
No 185
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=81.13 E-value=5.4 Score=32.40 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=48.5
Q ss_pred CceEEEEEEcC--CC--eEEEEeCCCCcHHHHHHHHHH--hh-CCCcCCeEEEeCCeecCCCCCcccCCCCCCCeEeccc
Q psy11489 10 KKLITIVVKTP--KE--KQNIEIEEDASVTDFKEAVAK--KF-NALPEQLCLIFAGKIMKDHENLSNHNMKDGLTSLKQL 82 (433)
Q Consensus 10 ~~~i~V~VKt~--~~--~~~i~V~~~~TV~~LK~~I~~--~~-~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV~~~~ 82 (433)
-+.|+|.|-+. .. .+.++++...||.++=+...- .+ .++.+...+-..|++.+ .++-+++||.|++-.
T Consensus 10 ~~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 10 LNQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred cceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 35678888773 32 367789999999999887742 32 56666677888888887 455689999994443
No 186
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=81.07 E-value=3.1 Score=33.09 Aligned_cols=55 Identities=9% Similarity=0.152 Sum_probs=48.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 24 QNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 24 ~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+...++-..++..||+.++.+.+++-+.-.+...+..|.++++|.+.+|+-.-.|
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlV 59 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTV 59 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEE
Confidence 3345666788999999999999999999999889999999999999999877777
No 187
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=80.93 E-value=5.7 Score=31.26 Aligned_cols=64 Identities=9% Similarity=0.230 Sum_probs=40.9
Q ss_pred EEEEEEcCC-------CeEEEEeCCCCcHHHHHHHHHHhhCC------C---c----CCeEEEeCCeecCCCCCcccCCC
Q psy11489 13 ITIVVKTPK-------EKQNIEIEEDASVTDFKEAVAKKFNA------L---P----EQLCLIFAGKIMKDHENLSNHNM 72 (433)
Q Consensus 13 i~V~VKt~~-------~~~~i~V~~~~TV~~LK~~I~~~~~i------p---~----~~qrLIf~GkiLkD~~tLs~~gI 72 (433)
|+|+||... ...+|++ ...||.+|++.+.+++.- . . ...++..+|+...+.+-+ ++-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCC
Confidence 457777532 2235664 457999999999887621 1 1 136677788877643333 4569
Q ss_pred CCCCeE
Q psy11489 73 KDGLTS 78 (433)
Q Consensus 73 ~dg~tV 78 (433)
++|+.|
T Consensus 79 ~~gDeV 84 (93)
T 3dwg_C 79 ADGDSV 84 (93)
T ss_dssp CTTCEE
T ss_pred CCCCEE
Confidence 999999
No 188
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=78.24 E-value=9.8 Score=31.64 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=39.8
Q ss_pred ceEEEEEEcCC-------C--eEEEEeCC---CCcHHHHHHHHHHhhCCCcCCeEEEe-CCe------ecCCCC---Cc-
Q psy11489 11 KLITIVVKTPK-------E--KQNIEIEE---DASVTDFKEAVAKKFNALPEQLCLIF-AGK------IMKDHE---NL- 67 (433)
Q Consensus 11 ~~i~V~VKt~~-------~--~~~i~V~~---~~TV~~LK~~I~~~~~ip~~~qrLIf-~Gk------iLkD~~---tL- 67 (433)
..|+|+||... . .++|+++. ..||.+|.+.+.+++- ..+-+|+. +|+ +|-+++ .|
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~--~~~~~lf~~~g~lr~~i~VlVN~~di~~l~ 87 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLL--KERPELFIQGDSVRPGILVLINDADWELLG 87 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTC--CSCHHHHCCSSSCCSSEEEEESSSBHHHHC
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHcc--chhHhhCccCCcccCCeEEEECCeeeeccC
Confidence 34888888532 1 35688873 3699999999988761 11222221 121 333333 22
Q ss_pred -ccCCCCCCCeE
Q psy11489 68 -SNHNMKDGLTS 78 (433)
Q Consensus 68 -s~~gI~dg~tV 78 (433)
.++.+++||.|
T Consensus 88 gldt~L~dGDeV 99 (114)
T 1wgk_A 88 ELDYQLQDQDSI 99 (114)
T ss_dssp TTTCBCCSSEEE
T ss_pred CcCcCCCCCCEE
Confidence 35789999999
No 189
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=77.98 E-value=7.1 Score=39.17 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=32.1
Q ss_pred HHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcCh
Q psy11489 350 SQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMANP 388 (433)
Q Consensus 350 ~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~P 388 (433)
.-+++|.+|||.-.. -++|+...+.+++.+.++|++++
T Consensus 327 eaI~rL~~mGF~~~~-a~~al~a~~~n~e~A~~~L~~~~ 364 (368)
T 1oqy_A 327 EAIERLKALGFPESL-VIQAYFACEKNENLAANFLLSQN 364 (368)
T ss_dssp HHHHHHHHHTCCSHH-HHHHTSSSSSCSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHH-HHHHHHHcCCCHHHHHHHHhhCc
Confidence 668999999998544 47889999999999999998754
No 190
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=77.82 E-value=4 Score=33.49 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=48.0
Q ss_pred ceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeE-EE------eCCeecCCCCCc----ccCCCCCCCeE
Q psy11489 11 KLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQLC-LI------FAGKIMKDHENL----SNHNMKDGLTS 78 (433)
Q Consensus 11 ~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qr-LI------f~GkiLkD~~tL----s~~gI~dg~tV 78 (433)
+.+-|+|-..++ ...|.|++++|+.++=+.+.++.++..+.-. |+ +--|.++|++.| +...+.....+
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~ 87 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRF 87 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEE
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEE
Confidence 334555555554 6789999999999999999999988765432 32 245889999854 44455566666
No 191
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=77.79 E-value=9.2 Score=36.73 Aligned_cols=69 Identities=13% Similarity=0.132 Sum_probs=51.7
Q ss_pred CceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCc-CCeEEEe--CCe--ecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALP-EQLCLIF--AGK--IMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~-~~qrLIf--~Gk--iLkD~~tLs~~gI~dg~tV 78 (433)
.+.+.|+|...++.++|+|+.++|+.+|=+.|.++.++.. +-.-|.| +|. .|+.+++|.+.+++.+..+
T Consensus 20 ~~~~~~~V~lldg~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~ 93 (314)
T 1h4r_A 20 PKTFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPV 93 (314)
T ss_dssp -CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSE
T ss_pred CCeeEEEEEeCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCE
Confidence 5678999999877888999999999999999999999864 3334444 443 4676778888766555544
No 192
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=77.64 E-value=6.5 Score=38.63 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=38.2
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCC-eecCCCC
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAG-KIMKDHE 65 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~G-kiLkD~~ 65 (433)
....+.+.+..|+.+||+.|++.++++++.|.|+|.+ ++..|..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~ 366 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPG 366 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSS
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCC
Confidence 4577888999999999999999999999999999999 5554554
No 193
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=77.00 E-value=8.7 Score=40.73 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=51.3
Q ss_pred CceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCc-CCeEEEeCC-----eecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALP-EQLCLIFAG-----KIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~-~~qrLIf~G-----kiLkD~~tLs~~gI~dg~tV 78 (433)
++.|.|.|...+++++|.|+..+|+.+|=..|..+.++.- +-.-|.|.. ..|+.+.+|.+.+++.+..+
T Consensus 2 ~k~i~v~V~llDgt~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~ 76 (575)
T 2i1j_A 2 PKSMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPL 76 (575)
T ss_dssp -CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSE
T ss_pred CceEEEEEEeCCCeEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCe
Confidence 3578999999888888999999999999999999999854 334555532 25666667777766655544
No 194
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=76.71 E-value=9.4 Score=36.19 Aligned_cols=66 Identities=14% Similarity=0.204 Sum_probs=49.0
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCC-eEEEe---CCe--ecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQ-LCLIF---AGK--IMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~-qrLIf---~Gk--iLkD~~tLs~~gI~dg~tV 78 (433)
|.|.|...+++++|.|+..+|+.+|=+.|.++.++...+ .-|.| +|. .|+.++++.+.+++.+..+
T Consensus 2 i~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~ 73 (294)
T 1ef1_A 2 ISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPL 73 (294)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSE
T ss_pred EEEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCE
Confidence 788888888788899999999999999999999986532 34444 332 4666667777766555544
No 195
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=73.55 E-value=0.75 Score=38.39 Aligned_cols=64 Identities=11% Similarity=0.220 Sum_probs=37.9
Q ss_pred EEEEEEcCC-------CeEEEEeCC----CCcHHHHHHHHHHhhCCCcCCeEEE-eCC--e------ecCCCCC---c--
Q psy11489 13 ITIVVKTPK-------EKQNIEIEE----DASVTDFKEAVAKKFNALPEQLCLI-FAG--K------IMKDHEN---L-- 67 (433)
Q Consensus 13 i~V~VKt~~-------~~~~i~V~~----~~TV~~LK~~I~~~~~ip~~~qrLI-f~G--k------iLkD~~t---L-- 67 (433)
|+|+||..+ .+.+|+|+. ..||++|=+.|.+++.. .+-+|+ -.| + +|-++.- |
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~~--~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYVK--ERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTCC--SCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHccc--cchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 677777532 235677763 35999999888887622 222332 123 1 4444432 2
Q ss_pred ccCCCCCCCeE
Q psy11489 68 SNHNMKDGLTS 78 (433)
Q Consensus 68 s~~gI~dg~tV 78 (433)
.+|.+++||+|
T Consensus 83 ldt~L~dgD~V 93 (110)
T 2k9x_A 83 MDYVLNDGDTV 93 (110)
T ss_dssp SCCCCCSSCEE
T ss_pred cccCCCCcCEE
Confidence 35789999998
No 196
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=71.26 E-value=2.1 Score=36.19 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=31.8
Q ss_pred hHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhc
Q psy11489 348 YRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMA 386 (433)
Q Consensus 348 y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~ 386 (433)
|..-+.+|.+|||....+ ..||..++++++.++++|+.
T Consensus 76 ~~~~v~~L~eMGF~~~~a-~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 76 FLQLMSKFKEMGFELKDI-KEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHHHHTTCCHHHH-HHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHH-HHHHHHcCCCHHHHHHHHHH
Confidence 556799999999976554 56789999999999999874
No 197
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=71.05 E-value=7.9 Score=28.42 Aligned_cols=46 Identities=9% Similarity=0.242 Sum_probs=35.1
Q ss_pred EeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 27 EIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 27 ~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
++ ...||.+|.+.+ +++.+...+..+|+++..+ ...+.-+++||.|
T Consensus 10 ~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v 55 (64)
T 2cu3_A 10 PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVV 55 (64)
T ss_dssp CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEE
T ss_pred Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEE
Confidence 45 668999999876 4667778888999887633 4445679999999
No 198
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=70.54 E-value=5.1 Score=30.62 Aligned_cols=44 Identities=9% Similarity=0.156 Sum_probs=35.4
Q ss_pred CCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 30 EDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 30 ~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
...||.+|.+. ++++++...+.++|+++.. ....++-+++||.|
T Consensus 13 ~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~v 56 (73)
T 2kl0_A 13 QSASVAALMTE----LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEI 56 (73)
T ss_dssp CCSBHHHHHHH----TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEE
T ss_pred CCCcHHHHHHH----cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEE
Confidence 56899998764 5788888889999998853 35667789999999
No 199
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=70.28 E-value=5.2 Score=29.57 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=36.0
Q ss_pred EEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 26 IEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 26 i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
++++...||.+|.+.+ +++.+...+..+|+++..+ ...+.-+++||.|
T Consensus 10 ~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v 57 (66)
T 1f0z_A 10 MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQI 57 (66)
T ss_dssp ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEE
T ss_pred EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEE
Confidence 3456778999999876 5667778888999887532 3345578999999
No 200
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=70.06 E-value=1.6 Score=31.84 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=26.4
Q ss_pred HHHHHhhhcCCCchhhhhhcccc-CCcchHHHHHhhhc
Q psy11489 350 SQLDQLTAMGFVNREANLQGSLF-GNAGMQSMMQQMMA 386 (433)
Q Consensus 350 ~QL~qL~~mGf~d~~~Nl~al~~-~~g~~~~a~~~l~~ 386 (433)
.-|++|.+|||.-..+- .|+.. ++-+++.|+++|.+
T Consensus 11 qmlq~L~eMGFd~erae-~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 11 QMLQELVNAGCDQEMAG-RALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp HHHHHHHHHHCCHHHHH-HHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHH-HHHHHhCcccHHHHHHHHHH
Confidence 45999999999775443 34444 44589999999864
No 201
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=69.57 E-value=4.6 Score=31.32 Aligned_cols=48 Identities=21% Similarity=0.396 Sum_probs=36.9
Q ss_pred EEeC--CCCcHHHHHHHHHHhhCCC-cCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 26 IEIE--EDASVTDFKEAVAKKFNAL-PEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 26 i~V~--~~~TV~~LK~~I~~~~~ip-~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
++++ ...||.+|.+. ++++ ++...+.++|+++.. ....++-+++||.|
T Consensus 10 ~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~I 60 (78)
T 2k5p_A 10 STVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLER-EAFDATTVKDGDAV 60 (78)
T ss_dssp EECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCT-THHHHCEECSSBCE
T ss_pred EEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECCh-HHcCcccCCCCCEE
Confidence 3455 67899998875 4677 778888899998863 35666789999999
No 202
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=68.75 E-value=0.65 Score=35.99 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=10.2
Q ss_pred cCCcchHHHHHhhhcChHHHHhc
Q psy11489 372 FGNAGMQSMMQQMMANPQLMQNM 394 (433)
Q Consensus 372 ~~~g~~~~a~~~l~~~P~~~~~m 394 (433)
.+.+.++.+-+-+-+||++++.+
T Consensus 10 r~~Pqf~qlR~~vqqNP~lL~~l 32 (72)
T 1pve_A 10 RNQPQFQQMRQIIQQNPSLLPAL 32 (72)
T ss_dssp TTCTTTTTHHHHHTTCGGGHHHH
T ss_pred HcChHHHHHHHHHHHCHHHHHHH
Confidence 34444444434444455544443
No 203
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=68.23 E-value=6.3 Score=32.17 Aligned_cols=46 Identities=13% Similarity=0.110 Sum_probs=34.7
Q ss_pred EEEEEEcC--------CCeEEEEeCCCCcHHHHHHHHHHhhCCCc-C----CeEEEeCC
Q psy11489 13 ITIVVKTP--------KEKQNIEIEEDASVTDFKEAVAKKFNALP-E----QLCLIFAG 58 (433)
Q Consensus 13 i~V~VKt~--------~~~~~i~V~~~~TV~~LK~~I~~~~~ip~-~----~qrLIf~G 58 (433)
|+|+|... ++.+.|-|+++.+..+|..+|.+++++.. + ..||-|+.
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 77777765 34689999999999999999999987642 2 24565554
No 204
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=68.09 E-value=42 Score=27.35 Aligned_cols=67 Identities=12% Similarity=0.238 Sum_probs=51.1
Q ss_pred eEEEEEEcCC----CeEEEEeCCCCcHHHHHHHHHHhhCCCcC--CeEEEeCCe---ecCCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTPK----EKQNIEIEEDASVTDFKEAVAKKFNALPE--QLCLIFAGK---IMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~----~~~~i~V~~~~TV~~LK~~I~~~~~ip~~--~qrLIf~Gk---iLkD~~tLs~~gI~dg~tV 78 (433)
.++|+|...+ ..+++.|..+.-|..+--+|-++.+++.+ +--|-.--| .|+-..||..|||+.+..+
T Consensus 19 eL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L 94 (102)
T 2kmc_A 19 ELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANL 94 (102)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCE
T ss_pred EEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeee
Confidence 5888888843 24788999889999999999988877654 333433333 5677789999999999998
No 205
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=65.38 E-value=3.2 Score=29.98 Aligned_cols=36 Identities=8% Similarity=0.143 Sum_probs=29.7
Q ss_pred HHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhc
Q psy11489 350 SQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMA 386 (433)
Q Consensus 350 ~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~ 386 (433)
+++.+|-+|||.- +.=++||..+.++++.|-.-|++
T Consensus 13 ~~Ia~Lm~mGFsr-~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 13 AKIAKLMGEGYAF-EEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCH-HHHHHHHHHhCCCHHHHHHHHHH
Confidence 7899999999964 44489999999999998776654
No 206
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=65.10 E-value=13 Score=29.84 Aligned_cols=67 Identities=15% Similarity=0.317 Sum_probs=46.0
Q ss_pred CceEEEEEEcCC-----CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCe-ec-CCCCCccc----CCCCCCCeE
Q psy11489 10 KKLITIVVKTPK-----EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGK-IM-KDHENLSN----HNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~-----~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~Gk-iL-kD~~tLs~----~gI~dg~tV 78 (433)
.+.|.|..|..+ ++-.+.|+.+.||.+|...|.++.++.+++--.+|-+. .+ .-++++++ ++ .|| .+
T Consensus 3 ~~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DG-fL 80 (91)
T 4gdk_A 3 KKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDG-KL 80 (91)
T ss_dssp -CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTT-EE
T ss_pred CceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCC-EE
Confidence 455777777643 24567889999999999999999999887666666444 33 33455544 46 555 44
No 207
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=64.93 E-value=33 Score=27.14 Aligned_cols=66 Identities=12% Similarity=0.163 Sum_probs=44.4
Q ss_pred eEEEEEEcCCCeEEEEeCC-CCcHHHHHHHHHHhh----CCCcCC-eE---EEe-CCeecCCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTPKEKQNIEIEE-DASVTDFKEAVAKKF----NALPEQ-LC---LIF-AGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~~~~~i~V~~-~~TV~~LK~~I~~~~----~ip~~~-qr---LIf-~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.|+|+|+..+.++.|-... +.||..|-++...++ +-.++. .+ |-+ .|-+|+-++.|.+. +.|++.|
T Consensus 2 ~MKvtV~fg~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i 77 (85)
T 2ns5_A 2 EFKVTVCFGRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRL 77 (85)
T ss_dssp CEEEEEEETTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEE
T ss_pred ccEEEEEECCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceE
Confidence 4799999988888887744 569999987775554 222322 22 223 66688777788775 4566666
No 208
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=64.83 E-value=31 Score=33.89 Aligned_cols=69 Identities=13% Similarity=0.223 Sum_probs=47.8
Q ss_pred CceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCc-CCeEEEeCC---------eecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALP-EQLCLIFAG---------KIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~-~~qrLIf~G---------kiLkD~~tLs~~gI~dg~tV 78 (433)
.+.+.++|...++ ...|.|+..+|+.+|=+.|+++.++.. +-.-|.+.. +.|+-++++.+.++....++
T Consensus 83 ~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l 162 (371)
T 3ivf_A 83 KKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETL 162 (371)
T ss_dssp ECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEE
T ss_pred CceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceE
Confidence 3457888988876 678999999999999999999998754 445565532 23333445555555455555
No 209
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=64.22 E-value=12 Score=39.14 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=46.6
Q ss_pred CceEEEEEEcCCC---eEEEEeCCCCcHHHHHHHHHHhhCCC---cCCeEE--EeCCe---ecCCCCCcccC
Q psy11489 10 KKLITIVVKTPKE---KQNIEIEEDASVTDFKEAVAKKFNAL---PEQLCL--IFAGK---IMKDHENLSNH 70 (433)
Q Consensus 10 ~~~i~V~VKt~~~---~~~i~V~~~~TV~~LK~~I~~~~~ip---~~~qrL--If~Gk---iLkD~~tLs~~ 70 (433)
.+.++|++-..+. .++|-|+.+.||.||-+.+.++.+++ ...+|| ||++| +++++++|+++
T Consensus 337 ~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i 408 (530)
T 2ylm_A 337 RRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECL 408 (530)
T ss_dssp BCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGS
T ss_pred CceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccc
Confidence 3457777665542 57788899999999999999999886 467887 48887 56677777754
No 210
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.06 E-value=25 Score=28.23 Aligned_cols=61 Identities=8% Similarity=0.153 Sum_probs=40.7
Q ss_pred CceEEEEEEcCC--CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE--eCCeecCCCCCcccCCCCCCCeE
Q psy11489 10 KKLITIVVKTPK--EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLI--FAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 10 ~~~i~V~VKt~~--~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI--f~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.+..+| +..+ .++-|... +.++|+.+..+++.++....+|+ ..|.++.|++.+..+. ..|+
T Consensus 9 ~kpfkV--~~~~Rs~k~GV~A~---sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp---~nT~ 73 (91)
T 2eel_A 9 ARPFRV--SNHDRSSRRGVMAS---SLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLG---DNTH 73 (91)
T ss_dssp CEEEEE--ECTTSCCCEEEEES---SHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSC---SSEE
T ss_pred CCCEEE--ecCCCCeEEeEEcC---CHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCC---CCCE
Confidence 344444 4433 45666543 59999999999999976555555 4699998887665553 4555
No 211
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=63.78 E-value=3.4 Score=37.70 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=34.2
Q ss_pred hhHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcC
Q psy11489 347 RYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMAN 387 (433)
Q Consensus 347 ~y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~ 387 (433)
.|...+++|.+|||....+ +.|+...+.+++.|+++|+++
T Consensus 162 ~~eekV~~l~~MGf~~~~a-~~AL~~~~wd~~~A~e~L~~~ 201 (201)
T 3k9o_A 162 EYTKKIENLCAMGFDRNAV-IVALSSKSWDVETATELLLSN 201 (201)
T ss_dssp HHHHHHHHHHTTTCCHHHH-HHHHHHTTTCHHHHHHHHHHC
T ss_pred hhHHHHHHHHHcCCCHHHH-HHHHHHcCCCHHHHHHHHhcC
Confidence 5788999999999987655 568889999999999999864
No 212
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=62.51 E-value=14 Score=29.78 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=36.2
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeE-EEeCCeecC
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKFNALPEQLC-LIFAGKIMK 62 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qr-LIf~GkiLk 62 (433)
.++.|.|+.++|=-++|+.|++.|++.+...+ ++..||.=+
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~kR 69 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKR 69 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCBCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCceee
Confidence 57999999999999999999999999999884 788887543
No 213
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=61.64 E-value=17 Score=30.70 Aligned_cols=56 Identities=27% Similarity=0.299 Sum_probs=41.7
Q ss_pred CceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcC------CeEEE---eCCe--ecCCCC
Q psy11489 10 KKLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPE------QLCLI---FAGK--IMKDHE 65 (433)
Q Consensus 10 ~~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~------~qrLI---f~Gk--iLkD~~ 65 (433)
.+.|-..|-..+. -+++.+..+.||.+++..++++.+...+ .++|+ |.|. +|++++
T Consensus 7 ~Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d 74 (120)
T 2dhz_A 7 GDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTE 74 (120)
T ss_dssp CCCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTC
T ss_pred CCcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcc
Confidence 3456666666665 4678899999999999999999987554 67665 6774 666665
No 214
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=61.62 E-value=20 Score=26.36 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=35.8
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
|.|+|+.++++. ++++...|+.+|-+.+..... ..-+-...+|++..= ++-+++|++|
T Consensus 1 m~i~i~~p~g~~-~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl-----~~~L~~~~~V 58 (73)
T 2kmm_A 1 MEVMVFTPKGEI-KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPL-----SYVLNSGDQV 58 (73)
T ss_dssp CCEEEECTTCCE-EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCT-----TCBCCSSSBE
T ss_pred CeEEEEcCCCCE-EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCC-----CcCcCCCCEE
Confidence 356677755432 566788999999888743321 122333467775543 3567788888
No 215
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=61.19 E-value=6 Score=41.54 Aligned_cols=31 Identities=13% Similarity=0.325 Sum_probs=28.9
Q ss_pred EEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE
Q psy11489 25 NIEIEEDASVTDFKEAVAKKFNALPEQLCLI 55 (433)
Q Consensus 25 ~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI 55 (433)
.+.|..++|+.+||+.|++.+|++++++||-
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 6788899999999999999999999999984
No 216
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=59.01 E-value=11 Score=30.51 Aligned_cols=65 Identities=8% Similarity=0.248 Sum_probs=39.8
Q ss_pred CccccCcCCCceEEEEEEcCC-----CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCe-ec-CCCCCccc
Q psy11489 1 MAEAQQESEKKLITIVVKTPK-----EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGK-IM-KDHENLSN 69 (433)
Q Consensus 1 ma~~~~~~~~~~i~V~VKt~~-----~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~Gk-iL-kD~~tLs~ 69 (433)
||++.+ .+.+.|.|.++..+ ++-.+.|+.+.||.+|...|.++.++. .+=| |-+. .+ .-++++++
T Consensus 3 ~~~~~~-~~~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~--alFl-yvn~~~~Ps~d~~m~~ 74 (96)
T 1wz3_A 3 MATESP-NSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD--SLFV-YVNSAFSPNPDESVID 74 (96)
T ss_dssp ----------CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS--SCEE-EEEEEECCCTTSBHHH
T ss_pred cCCCCC-CCCCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc--eEEE-EECCcccCChhhHHHH
Confidence 555432 23556777777643 245678899999999999999999888 4444 5555 43 34456554
No 217
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=58.62 E-value=22 Score=33.99 Aligned_cols=73 Identities=14% Similarity=0.048 Sum_probs=46.8
Q ss_pred CcCCCceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcC-CeEEEeC---C--eecCCCCCcccCCCCCCCeE
Q psy11489 6 QESEKKLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPE-QLCLIFA---G--KIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 6 ~~~~~~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~-~qrLIf~---G--kiLkD~~tLs~~gI~dg~tV 78 (433)
-++..+.+.++|...++ ..+++|+..+|+.+|=+.|.++.++... -.=|.|. | +.|+.++++.+.......++
T Consensus 11 ~~~~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l 90 (296)
T 3qij_A 11 RENLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNF 90 (296)
T ss_dssp ------CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEE
T ss_pred CCCCCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEE
Confidence 34456779999999875 6899999999999999999999998643 2445443 2 34565666665543333344
No 218
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=58.23 E-value=66 Score=25.31 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=51.2
Q ss_pred EEEEEcCCC--eEEEEeCCCCcHHHHHHHHHHhh-C--C--CcC-CeEEEeCC--eecCCCCCcccCCCCCCCeE
Q psy11489 14 TIVVKTPKE--KQNIEIEEDASVTDFKEAVAKKF-N--A--LPE-QLCLIFAG--KIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 14 ~V~VKt~~~--~~~i~V~~~~TV~~LK~~I~~~~-~--i--p~~-~qrLIf~G--kiLkD~~tLs~~gI~dg~tV 78 (433)
-|+.+..++ ..-|.|+.+.|+.++-++++.+. | + .+. -.|+.+.| +.|..+.|+.+.||+.=+.|
T Consensus 3 Pl~~~F~gDFV~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~v 77 (83)
T 2inc_C 3 PIMSNFERDFVIQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETL 77 (83)
T ss_dssp EEEEEETTCSBEEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEE
T ss_pred ceeEEeccccEEEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEE
Confidence 455566665 45678999999999999998664 2 2 222 56888999 99999999999999998887
No 219
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=57.51 E-value=9 Score=32.20 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=30.4
Q ss_pred HHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcC
Q psy11489 349 RSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMAN 387 (433)
Q Consensus 349 ~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~ 387 (433)
+.-|.+|-+|||.- .....|+..++.+++.++++|+..
T Consensus 9 ~~~v~~l~~MGFp~-~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 9 RQCVETVVNMGYSY-ECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCH-HHHHHHHHHHCcCHHHHHHHHHHh
Confidence 46689999999974 444677777777999999999874
No 220
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=57.50 E-value=19 Score=29.22 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=38.6
Q ss_pred eEEEEeCCCCcHHHHHHHHHHhhCCCcC-----------CeEEEeCC-eecCC------CCCcccCCCCCCCeE
Q psy11489 23 KQNIEIEEDASVTDFKEAVAKKFNALPE-----------QLCLIFAG-KIMKD------HENLSNHNMKDGLTS 78 (433)
Q Consensus 23 ~~~i~V~~~~TV~~LK~~I~~~~~ip~~-----------~qrLIf~G-kiLkD------~~tLs~~gI~dg~tV 78 (433)
...|+|++++|+.+|-+.+.++..+.-. .-.|+..+ ..|+. +++|.++|+.+|+.|
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei 79 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQEL 79 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEE
Confidence 4568899999999999999985332221 23343333 23443 257999999999999
No 221
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=56.95 E-value=10 Score=41.07 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=40.7
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCC-CcccC
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHE-NLSNH 70 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~-tLs~~ 70 (433)
..+++.|.++.|+.+||..|.+.++++.+.|.+|+.+..--|.. ..++|
T Consensus 322 ~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 322 RVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp CCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 35778899999999999999999999999999998876555554 55554
No 222
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=56.33 E-value=72 Score=25.14 Aligned_cols=66 Identities=11% Similarity=0.080 Sum_probs=53.1
Q ss_pred EEEEEEcCCC--eEEEEeCCCCcHHHHHHHHHHhh-C--C--CcCCeEEEeCCee--cCCCCCcccCCCCCCCeE
Q psy11489 13 ITIVVKTPKE--KQNIEIEEDASVTDFKEAVAKKF-N--A--LPEQLCLIFAGKI--MKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 13 i~V~VKt~~~--~~~i~V~~~~TV~~LK~~I~~~~-~--i--p~~~qrLIf~Gki--LkD~~tLs~~gI~dg~tV 78 (433)
+-|+.+..++ ..-|.|+.++|+.++-++++... | + .+.-+|+.+.|+. |.++.|+.+.||+.=+.|
T Consensus 4 ~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~v 78 (84)
T 3ge3_C 4 FPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVI 78 (84)
T ss_dssp EEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEE
T ss_pred cceEEEeccccEEEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEE
Confidence 4566666665 45678999999999999998764 2 2 2247899999998 999999999999998888
No 223
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=55.84 E-value=8.3 Score=28.74 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=10.7
Q ss_pred CcHHHHHHHHHHhcCcHHHHhh
Q psy11489 396 QAPYMQSMLQAMSADPSIAQRV 417 (433)
Q Consensus 396 ~~P~~~~mmq~l~sNP~~~~q~ 417 (433)
++|.++++-+.+.+||+++..+
T Consensus 9 ~~Pqf~~lR~~vq~NP~~L~~l 30 (61)
T 2f4m_B 9 NQPQFQQMRQIIQQNPSLLPAL 30 (61)
T ss_dssp TCHHHHHHHHHHHHCGGGHHHH
T ss_pred cChHHHHHHHHHHHCHHHHHHH
Confidence 4445555555555555544443
No 224
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=55.53 E-value=40 Score=27.52 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHhhCCCcC----CeEEEeCCeecCCCCCcccCC
Q psy11489 33 SVTDFKEAVAKKFNALPE----QLCLIFAGKIMKDHENLSNHN 71 (433)
Q Consensus 33 TV~~LK~~I~~~~~ip~~----~qrLIf~GkiLkD~~tLs~~g 71 (433)
+..+|+.+..++++++.. .++|-..|.++.|++.+..+.
T Consensus 38 SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp 80 (100)
T 1f2r_I 38 SLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLP 80 (100)
T ss_dssp SHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSC
T ss_pred CHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCC
Confidence 699999999999999653 344446899999988766554
No 225
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=53.99 E-value=27 Score=29.78 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=34.3
Q ss_pred CCcHHHHHHHHHHhhCCCcCCeEEEe--CCeecC-----CC--CCcccCCCCCCCeE
Q psy11489 31 DASVTDFKEAVAKKFNALPEQLCLIF--AGKIMK-----DH--ENLSNHNMKDGLTS 78 (433)
Q Consensus 31 ~~TV~~LK~~I~~~~~ip~~~qrLIf--~GkiLk-----D~--~tLs~~gI~dg~tV 78 (433)
.+|..+|-+.|..++|... ++.++- ..|.|- |. ++|+++||+.|+.|
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfL 74 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSII 74 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEE
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEE
Confidence 4799999888988888863 555542 334443 22 48999999999988
No 226
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=52.54 E-value=14 Score=30.58 Aligned_cols=67 Identities=9% Similarity=0.202 Sum_probs=49.7
Q ss_pred eEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcC--CeEEEe--CCe-ecCCCCCcccCCCCCCCeE
Q psy11489 12 LITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPE--QLCLIF--AGK-IMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 12 ~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~--~qrLIf--~Gk-iLkD~~tLs~~gI~dg~tV 78 (433)
.++|+|...+..+++.|..+.-|..+--+|-++.++..+ +--|-. +-+ .|+-..||..|||+.+..+
T Consensus 26 eL~V~V~d~~~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L 97 (112)
T 2lgx_A 26 ELSVHVTDVNRDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKL 97 (112)
T ss_dssp CEECCBTTTTBCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBB
T ss_pred EEEEEEecCCccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccc
Confidence 466666665567888898889999999999988876554 222322 222 5667779999999999988
No 227
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=52.31 E-value=23 Score=28.42 Aligned_cols=40 Identities=25% Similarity=0.257 Sum_probs=35.5
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeE-EEeCCeec
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKFNALPEQLC-LIFAGKIM 61 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qr-LIf~GkiL 61 (433)
.++.+.|+..+|=-++|+.|++.|++.+...+ ++..||.=
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~k 62 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKK 62 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCcee
Confidence 57999999999999999999999999998884 77888754
No 228
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=51.36 E-value=35 Score=29.08 Aligned_cols=60 Identities=10% Similarity=0.273 Sum_probs=43.8
Q ss_pred CceEEEEEE-cCC-------CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE-eCCeecC-CCCCccc
Q psy11489 10 KKLITIVVK-TPK-------EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLI-FAGKIMK-DHENLSN 69 (433)
Q Consensus 10 ~~~i~V~VK-t~~-------~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI-f~GkiLk-D~~tLs~ 69 (433)
++.|-|.|. ..+ ++-.+-|+.+.||.+|...|.++.++++++--.+ |-++.+- -+.++++
T Consensus 33 P~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~ 102 (130)
T 2zjd_A 33 PTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISE 102 (130)
T ss_dssp TTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHH
T ss_pred CCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHH
Confidence 456788884 322 2356678999999999999999999998876666 8777664 3346655
No 229
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=50.91 E-value=11 Score=27.25 Aligned_cols=36 Identities=8% Similarity=0.241 Sum_probs=29.3
Q ss_pred HHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhc
Q psy11489 350 SQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMA 386 (433)
Q Consensus 350 ~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~ 386 (433)
+.+.+|-+|||.- +.=++||..+.++++.+-.-|.+
T Consensus 11 ~~I~~L~~lGF~r-~~ai~AL~~a~nnve~Aa~iL~e 46 (53)
T 2d9s_A 11 SEIERLMSQGYSY-QDIQKALVIAHNNIEMAKNILRE 46 (53)
T ss_dssp HHHHHHHHHTCCH-HHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCH-HHHHHHHHHhcCCHHHHHHHHHH
Confidence 4599999999964 44589999999999998776654
No 230
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=50.77 E-value=6 Score=33.31 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=28.7
Q ss_pred HHHHHhhhcCCCchhhhhhccccCC-cchHHHHHhhhcC
Q psy11489 350 SQLDQLTAMGFVNREANLQGSLFGN-AGMQSMMQQMMAN 387 (433)
Q Consensus 350 ~QL~qL~~mGf~d~~~Nl~al~~~~-g~~~~a~~~l~~~ 387 (433)
.-|.+|-+|||.-.. ...|+..++ .+++.++++|+++
T Consensus 5 ~~l~~L~~MGF~~~~-a~~AL~~t~n~~~e~A~~wL~~~ 42 (126)
T 2lbc_A 5 SSVMQLAEMGFPLEA-CRKAVYFTGNMGAEVAFNWIIVH 42 (126)
T ss_dssp HHHHHHHTTSSCCHH-HHHHHHHHTSCCHHHHHHHHHHG
T ss_pred HHHHHHHHcCCCHHH-HHHHHHHcCCCCHHHHHHHHHHh
Confidence 468999999998744 456676764 4899999999764
No 231
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=50.39 E-value=35 Score=27.22 Aligned_cols=59 Identities=8% Similarity=0.110 Sum_probs=39.6
Q ss_pred CCceEEEEEEcCCC-----eEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeec-CCCCCccc
Q psy11489 9 EKKLITIVVKTPKE-----KQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIM-KDHENLSN 69 (433)
Q Consensus 9 ~~~~i~V~VKt~~~-----~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiL-kD~~tLs~ 69 (433)
.++.|+|..|..++ +-.+.|+.+.||.+|-..|.++.++ +.+=|.-+...+ .-++++++
T Consensus 5 ~~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~ 69 (91)
T 3w1s_C 5 NIQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGE 69 (91)
T ss_dssp -CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHH
T ss_pred CCCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHH
Confidence 35567777776443 4567889999999999999999998 555554455533 33455544
No 232
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.87 E-value=12 Score=28.29 Aligned_cols=40 Identities=13% Similarity=0.371 Sum_probs=31.3
Q ss_pred hhhHHHHHHhhhcCCCchhhh-hh-ccccCCcchHHHHHhhhc
Q psy11489 346 VRYRSQLDQLTAMGFVNREAN-LQ-GSLFGNAGMQSMMQQMMA 386 (433)
Q Consensus 346 ~~y~~QL~qL~~mGf~d~~~N-l~-al~~~~g~~~~a~~~l~~ 386 (433)
.-|...+.+|++| |.+.+.- |+ .+...+++++.+|+.|++
T Consensus 16 ~~~~~~v~~L~~M-FP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 16 LEFNQAMDDFKTM-FPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp CCSHHHHHHHHHH-CSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3467889999999 9887655 33 356788999999999875
No 233
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=46.24 E-value=50 Score=25.41 Aligned_cols=57 Identities=23% Similarity=0.287 Sum_probs=37.1
Q ss_pred EEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 14 TIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 14 ~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
+|.|.++++.. ++++...|+.||-..|....+-. -.--..+||...- ++-+++|++|
T Consensus 7 ~i~v~tP~G~~-~~lp~GaT~~D~A~~Ih~~lg~~--~v~AkVNG~~v~L-----~~~L~~gd~V 63 (78)
T 3hvz_A 7 EVFVFTPKGDV-ISLPIGSTVIDFAYAIHSAVGNR--MIGAKVDGRIVPI-----DYKVKTGEII 63 (78)
T ss_dssp EEEEECTTSCE-EEEETTCBHHHHHHHHCHHHHHT--EEEEEETTEEECT-----TCBCCTTCBE
T ss_pred eEEEECCCCCE-EEecCCCCHHHHHHHhhhhhhcc--eEEEEECCEEcCC-----CcccCCCCEE
Confidence 57788876532 34678899999988886554321 1223347765542 4568999998
No 234
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=46.19 E-value=48 Score=26.29 Aligned_cols=49 Identities=8% Similarity=0.061 Sum_probs=37.1
Q ss_pred CceEEEEEEcCCCe--EEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCC
Q psy11489 10 KKLITIVVKTPKEK--QNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAG 58 (433)
Q Consensus 10 ~~~i~V~VKt~~~~--~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~G 58 (433)
+..+.|+.|...+. |.++=+...+..+|+.+|+..+.++.....|-|..
T Consensus 4 ~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 4 MSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD 54 (86)
T ss_dssp -CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC
T ss_pred CCEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC
Confidence 45577777777764 55543345799999999999999987788888874
No 235
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=45.92 E-value=15 Score=28.52 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=29.6
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhhCCC-----cCCeEEEeCC
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKFNAL-----PEQLCLIFAG 58 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~~ip-----~~~qrLIf~G 58 (433)
+.+.|.|+++.+..+|..+|.++++.. ....+|-|+.
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 357889999999999999999999865 3556666654
No 236
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=45.67 E-value=33 Score=32.96 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=42.0
Q ss_pred ceEEEEEEcCC-CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeC-------CeecCCCCCccc
Q psy11489 11 KLITIVVKTPK-EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFA-------GKIMKDHENLSN 69 (433)
Q Consensus 11 ~~i~V~VKt~~-~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~-------GkiLkD~~tLs~ 69 (433)
+.+-|+|-..+ ....|.|++++|+.||=+.+..+.++..+.-..+|. -|.|.|.+.+-+
T Consensus 30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~d 96 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVE 96 (281)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHH
T ss_pred ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHH
Confidence 33445554444 478999999999999999999888876555444433 478888876544
No 237
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=45.15 E-value=42 Score=29.64 Aligned_cols=53 Identities=15% Similarity=0.310 Sum_probs=36.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHhhC-CC---------cCCeEEEeCCeecCCCCCcccCCCCCCCeE
Q psy11489 24 QNIEIEEDASVTDFKEAVAKKFN-AL---------PEQLCLIFAGKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 24 ~~i~V~~~~TV~~LK~~I~~~~~-ip---------~~~qrLIf~GkiLkD~~tLs~~gI~dg~tV 78 (433)
.+++++. .||.+|.+.+..++. +. ...+.+..+|+...+.+- .++-|++||.|
T Consensus 16 ~~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeV 78 (168)
T 1v8c_A 16 SQLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATL 78 (168)
T ss_dssp SEEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEE
T ss_pred CeEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEE
Confidence 3456665 899999999987641 10 234667788888765433 34569999999
No 238
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=43.88 E-value=11 Score=35.74 Aligned_cols=40 Identities=15% Similarity=0.315 Sum_probs=34.2
Q ss_pred hhHHHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhcC
Q psy11489 347 RYRSQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMAN 387 (433)
Q Consensus 347 ~y~~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~~ 387 (433)
.|.+.+++|.+|||....+ +.|+...+.+++.|+++|+++
T Consensus 214 ~~~~~v~~l~~mgf~~~~~-~~al~~~nWd~~~A~e~L~~~ 253 (253)
T 3e46_A 214 EYTKKIENLCAAGFDRNAV-IVALSSKSWDVETATELLLSN 253 (253)
T ss_dssp HHHHHHHHHHHTTCCHHHH-HHHHHHTTTCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHcCCCHHHH-HHHHHHcCCCHHHHHHHHhcC
Confidence 5889999999999976655 557888999999999999864
No 239
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=42.95 E-value=22 Score=28.70 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=34.7
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeE-EEeCCeec
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKFNALPEQLC-LIFAGKIM 61 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qr-LIf~GkiL 61 (433)
.++.|.|+.++|=-++|+.|++.|++.+...+ ++..||.=
T Consensus 23 n~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK~k 63 (95)
T 2zjr_Q 23 GVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRK 63 (95)
T ss_dssp TCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCccc
Confidence 35899999999999999999999999999885 67888643
No 240
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=40.68 E-value=16 Score=26.82 Aligned_cols=38 Identities=11% Similarity=0.202 Sum_probs=30.2
Q ss_pred hHHHHHHhhhcCCCchhhh-h-hccccCCcchHHHHHhhhc
Q psy11489 348 YRSQLDQLTAMGFVNREAN-L-QGSLFGNAGMQSMMQQMMA 386 (433)
Q Consensus 348 y~~QL~qL~~mGf~d~~~N-l-~al~~~~g~~~~a~~~l~~ 386 (433)
+.+.+.+|++| |.+.+.- | .++...+++++.+|..|++
T Consensus 9 ~ee~l~~L~em-FP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 9 SEEDLKAIQDM-FPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp CHHHHHHHHHH-CSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 34789999999 9887655 3 4467788999999999875
No 241
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=38.21 E-value=70 Score=26.75 Aligned_cols=60 Identities=10% Similarity=0.304 Sum_probs=42.0
Q ss_pred CceEEEEEEcC-C------CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEe-CCeecCCCCCccc
Q psy11489 10 KKLITIVVKTP-K------EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIF-AGKIMKDHENLSN 69 (433)
Q Consensus 10 ~~~i~V~VKt~-~------~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf-~GkiLkD~~tLs~ 69 (433)
++.|-|.|.-. + ++-.+-|+.+.||.+|...|.++.++.+++--.+| ++....-+.++++
T Consensus 29 P~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~ 96 (119)
T 3h9d_A 29 PDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMAD 96 (119)
T ss_dssp TTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHH
T ss_pred CCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHH
Confidence 44567777542 2 23456789999999999999999999887754444 5555555556654
No 242
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=37.63 E-value=14 Score=30.44 Aligned_cols=41 Identities=10% Similarity=0.187 Sum_probs=34.0
Q ss_pred hhHHHHHHhhhc-CCCchhhhhhccccCCcchHHHHHhhhcCh
Q psy11489 347 RYRSQLDQLTAM-GFVNREANLQGSLFGNAGMQSMMQQMMANP 388 (433)
Q Consensus 347 ~y~~QL~qL~~m-Gf~d~~~Nl~al~~~~g~~~~a~~~l~~~P 388 (433)
-|.+-+..|.+| ||.. +.-+.||...++|+..|+..|+++.
T Consensus 38 d~eekVk~L~EmtG~se-eeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 38 DFEEKVKQLIDITGKNQ-DECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHHHTCCCH-HHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHhhCCCH-HHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 356778999999 9985 4447889999999999999999764
No 243
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=36.25 E-value=71 Score=26.08 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=35.7
Q ss_pred eEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeC
Q psy11489 12 LITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFA 57 (433)
Q Consensus 12 ~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~ 57 (433)
.++|++...+++..|.|+...+.++|..++.+.||-. +-|.|.
T Consensus 8 dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~---ldL~y~ 50 (103)
T 2cu1_A 8 DVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQS---MDLHYT 50 (103)
T ss_dssp EEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSC---EEEEEC
T ss_pred cEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCe---eeEEEe
Confidence 4666666678899999999999999999999999874 456666
No 244
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=35.55 E-value=68 Score=26.46 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=29.1
Q ss_pred CceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHh
Q psy11489 10 KKLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKK 44 (433)
Q Consensus 10 ~~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~ 44 (433)
+..+.|.+-.+++ -+.++|..++|+.++|+.+-++
T Consensus 17 ~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 17 PPRILVECLLPNGMIVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp CSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred CCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHH
Confidence 4567787777876 6889999999999999999665
No 245
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=34.71 E-value=19 Score=26.27 Aligned_cols=36 Identities=8% Similarity=0.229 Sum_probs=29.0
Q ss_pred HHHHHhhhcCCCchhhhhhccccCCcchHHHHHhhhc
Q psy11489 350 SQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQMMA 386 (433)
Q Consensus 350 ~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~l~~ 386 (433)
+++..|-+|||.- +.=++|+..+.-+++.+-+-|++
T Consensus 9 ~~Ia~L~smGfsr-~da~~AL~ia~Ndv~~AtNiLlE 44 (56)
T 2juj_A 9 SEIENLMSQGYSY-QDIQKALVIAQNNIEMAKNILRE 44 (56)
T ss_dssp HHHHHHHTTTCCH-HHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHcCCCH-HHHHHHHHHhcccHHHHHHHHHH
Confidence 6899999999964 44488898888899988776654
No 246
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=34.69 E-value=1.2e+02 Score=23.83 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=42.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeC-CeecCCCCCcccCCCCCCCeE
Q psy11489 24 QNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFA-GKIMKDHENLSNHNMKDGLTS 78 (433)
Q Consensus 24 ~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~-GkiLkD~~tLs~~gI~dg~tV 78 (433)
..++|++..-...+-+-.+++|.+++..--+|.+ |--+.-.+|-...-+|.|+.+
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseL 81 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSEL 81 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEE
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCcee
Confidence 3568999888888888999999999988777644 444555567777777888888
No 247
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=32.81 E-value=96 Score=28.61 Aligned_cols=54 Identities=19% Similarity=0.393 Sum_probs=36.9
Q ss_pred EEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCcCC-eEEE--e-C---CeecCCCCC
Q psy11489 13 ITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALPEQ-LCLI--F-A---GKIMKDHEN 66 (433)
Q Consensus 13 i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~~~-qrLI--f-~---GkiLkD~~t 66 (433)
+.|.|-..++ ..+|.|+++.|+.+|-+.+.++.++..+. ..|+ + . -+.|.|++.
T Consensus 35 ~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~E~~~~~~ler~l~d~E~ 96 (291)
T 3tca_A 35 LVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLYEIYPELQIERVFEDHEN 96 (291)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEEEEETTTTEEEECCTTSB
T ss_pred eEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEEEeccccccceecccchh
Confidence 4444444444 67899999999999999999999886643 3332 1 1 246677653
No 248
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=31.89 E-value=91 Score=26.30 Aligned_cols=60 Identities=17% Similarity=0.380 Sum_probs=41.8
Q ss_pred CceEEEEEEcC-C------CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeecC-CCCCccc
Q psy11489 10 KKLITIVVKTP-K------EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMK-DHENLSN 69 (433)
Q Consensus 10 ~~~i~V~VKt~-~------~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiLk-D~~tLs~ 69 (433)
++.|-|.|.-. + ++-.+-|+.+.||.+|...|.++..+.+++--.+|-+..+- -+.++++
T Consensus 34 P~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~ 101 (125)
T 3m95_A 34 PDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGS 101 (125)
T ss_dssp TTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred CCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHH
Confidence 45567777542 2 23456789999999999999999999888765566444443 4446554
No 249
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=31.65 E-value=27 Score=24.32 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCcHHHHhhhh
Q psy11489 399 YMQSMLQAMSADPSIAQRVIG 419 (433)
Q Consensus 399 ~~~~mmq~l~sNP~~~~q~~~ 419 (433)
.-++.+..|.+||++|...+.
T Consensus 18 qqqqvl~ILksnPqLMAAfIk 38 (47)
T 1zoq_C 18 QQQQVLNILKSNPQLMAAFIK 38 (47)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHH
Confidence 456788899999999987763
No 250
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=31.46 E-value=53 Score=31.07 Aligned_cols=58 Identities=16% Similarity=0.252 Sum_probs=36.3
Q ss_pred CceEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeC-------CeecCCCCCcc
Q psy11489 10 KKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFA-------GKIMKDHENLS 68 (433)
Q Consensus 10 ~~~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~-------GkiLkD~~tLs 68 (433)
+..|+|.+ ..+...+|.|++++|+.||=..+..+.++..+.-..+|. -|.|.|.+.+-
T Consensus 8 ~~ivkv~~-~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ 72 (256)
T 3hk0_A 8 KQDVKVFS-EDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVV 72 (256)
T ss_dssp CEEEEEEE-TTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHH
T ss_pred ceEEEEEe-cCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHH
Confidence 33455543 223478999999999999999998887776555555544 47888887543
No 251
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=30.20 E-value=71 Score=25.12 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=30.0
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEE
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCL 54 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrL 54 (433)
.++.+.|+.++|=-++|+.|++.|++.+...+-
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT 55 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNT 55 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEe
Confidence 479999999999999999999999999988853
No 252
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=29.90 E-value=84 Score=32.57 Aligned_cols=47 Identities=13% Similarity=0.139 Sum_probs=38.1
Q ss_pred CceEEEEEEcCCC-eEEEEeCCCCcHHHHHHHHHHhhCCCc--CCeEEEe
Q psy11489 10 KKLITIVVKTPKE-KQNIEIEEDASVTDFKEAVAKKFNALP--EQLCLIF 56 (433)
Q Consensus 10 ~~~i~V~VKt~~~-~~~i~V~~~~TV~~LK~~I~~~~~ip~--~~qrLIf 56 (433)
.+.+.+.|...++ ...|.|+...|+.+|-+.|+++.++.. +-.-|.+
T Consensus 214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 3458888988765 688999999999999999999999974 4455544
No 253
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=28.88 E-value=1.1e+02 Score=24.93 Aligned_cols=61 Identities=15% Similarity=0.321 Sum_probs=41.9
Q ss_pred CceEEEEEEcCC-------CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeec-CCCCCcccC
Q psy11489 10 KKLITIVVKTPK-------EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIM-KDHENLSNH 70 (433)
Q Consensus 10 ~~~i~V~VKt~~-------~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiL-kD~~tLs~~ 70 (433)
++.|-|.|...+ ++-.+-|+.+.||.+|...|.++.++.+++--.+|-+..+ .-+.+++++
T Consensus 25 p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 25 PDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp TTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 456778777542 1345678889999999999999999988765444555544 344466553
No 254
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=27.30 E-value=1.2e+02 Score=25.02 Aligned_cols=61 Identities=15% Similarity=0.300 Sum_probs=42.0
Q ss_pred CceEEEEEEcC-C------CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeec-CCCCCcccC
Q psy11489 10 KKLITIVVKTP-K------EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIM-KDHENLSNH 70 (433)
Q Consensus 10 ~~~i~V~VKt~-~------~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiL-kD~~tLs~~ 70 (433)
++.|-|.|... + ++-.+-|+.+.||.+|...|.++.++.+++--.+|-++.+ .-+.+++++
T Consensus 26 P~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 94 (117)
T 1eo6_A 26 PDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQL 94 (117)
T ss_dssp TTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHH
Confidence 45677777742 2 2345678889999999999999999988765455655544 344466553
No 255
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=27.12 E-value=1.4e+02 Score=24.71 Aligned_cols=60 Identities=20% Similarity=0.355 Sum_probs=41.2
Q ss_pred CceEEEEEEcCC-------CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCeec-CCCCCccc
Q psy11489 10 KKLITIVVKTPK-------EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIM-KDHENLSN 69 (433)
Q Consensus 10 ~~~i~V~VKt~~-------~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~GkiL-kD~~tLs~ 69 (433)
++.|-|.|.-.. ++..+-|+.+.||.+|...|.++.++.+++--.+|-+..+ .-+.++++
T Consensus 28 P~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~ 95 (118)
T 3rui_B 28 KNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSA 95 (118)
T ss_dssp SSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHH
T ss_pred CCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHH
Confidence 445667775422 2345678999999999999999999988766656644444 34445544
No 256
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=27.05 E-value=37 Score=30.02 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=30.5
Q ss_pred HHHHHhhhcCCCchhhhhhccccCCcchHHHHHh
Q psy11489 350 SQLDQLTAMGFVNREANLQGSLFGNAGMQSMMQQ 383 (433)
Q Consensus 350 ~QL~qL~~mGf~d~~~Nl~al~~~~g~~~~a~~~ 383 (433)
.....|.+-||++.+..+.|+..++|++..|+.-
T Consensus 104 ~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~e 137 (162)
T 4dbg_B 104 RKVQELQSLGFGPEEGSLQALFQHGGDVSRALTE 137 (162)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHH
Confidence 4578899999999999999999999999999754
No 257
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.99 E-value=93 Score=24.50 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=30.5
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEE
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLI 55 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLI 55 (433)
.++.|.|+..+|=-++|+.|++.|++.+...+-+
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl 57 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTL 57 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEe
Confidence 4799999999999999999999999999888643
No 258
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=24.99 E-value=90 Score=27.42 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=32.7
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeE-EEeCC
Q psy11489 22 EKQNIEIEEDASVTDFKEAVAKKFNALPEQLC-LIFAG 58 (433)
Q Consensus 22 ~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qr-LIf~G 58 (433)
.++.|.|+.+.|=-++|+.|++.|+|.+.... |++.|
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~ 131 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD 131 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCC
Confidence 36899999999999999999999999999885 66666
No 259
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=23.84 E-value=3.2e+02 Score=22.82 Aligned_cols=67 Identities=7% Similarity=0.073 Sum_probs=51.5
Q ss_pred eEEEEEEcCCC-----eEEEEeCCCCcHHHHHHHHHH-hh-------CCCcCCeEEEeCCeecCC--CCCcccCCCCCCC
Q psy11489 12 LITIVVKTPKE-----KQNIEIEEDASVTDFKEAVAK-KF-------NALPEQLCLIFAGKIMKD--HENLSNHNMKDGL 76 (433)
Q Consensus 12 ~i~V~VKt~~~-----~~~i~V~~~~TV~~LK~~I~~-~~-------~ip~~~qrLIf~GkiLkD--~~tLs~~gI~dg~ 76 (433)
..-|.|-+.+. -+.+-|+++++..+|-+.+-. .+ .|+-++.....+|+...- +++|.+.||..-+
T Consensus 23 ~qLlYigWd~HllFcap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs 102 (119)
T 3u52_E 23 MQLLYVYWPDHLLFCAPFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKS 102 (119)
T ss_dssp CEEEEEECTTCTTSCSCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTE
T ss_pred CEEEEEEecCCeeecCceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchh
Confidence 45677887664 388999999999999887743 33 345557778899998863 3599999999888
Q ss_pred eE
Q psy11489 77 TS 78 (433)
Q Consensus 77 tV 78 (433)
.|
T Consensus 103 ~l 104 (119)
T 3u52_E 103 ML 104 (119)
T ss_dssp EE
T ss_pred eE
Confidence 88
No 260
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=23.80 E-value=2.4e+02 Score=22.29 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=34.1
Q ss_pred eEEEEEEcCCCeEEEEeCC--CCcHHHHHHHHHHhhCCCcCCeEEEeC
Q psy11489 12 LITIVVKTPKEKQNIEIEE--DASVTDFKEAVAKKFNALPEQLCLIFA 57 (433)
Q Consensus 12 ~i~V~VKt~~~~~~i~V~~--~~TV~~LK~~I~~~~~ip~~~qrLIf~ 57 (433)
.+.++|...++...+.|+. +.|-.+|...+...+++. .+.|-|.
T Consensus 6 ~v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~ 51 (87)
T 2bkf_A 6 QVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYL 51 (87)
T ss_dssp CEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEE
T ss_pred eEEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEE
Confidence 4677777888877766655 889999999999999996 4555443
No 261
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=22.28 E-value=1.5e+02 Score=23.60 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=36.2
Q ss_pred EEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCe
Q psy11489 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGK 59 (433)
Q Consensus 13 i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~Gk 59 (433)
++|++...+++..|.+..-...++|..++...||-.- -|.|...
T Consensus 5 vRIKfE~~gEKRIi~f~RPvkf~dl~qkv~~afGq~l---dl~y~nn 48 (94)
T 2jrh_A 5 VRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQPL---DLHYMNN 48 (94)
T ss_dssp EEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHCSSE---EEEEECS
T ss_pred eEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCee---eeEEecc
Confidence 6677777889999999999999999999999998654 4666654
No 262
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=20.81 E-value=1.7e+02 Score=23.87 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=35.9
Q ss_pred eEEEEEEcCCCeEEEEeCCCCcHHHHHHHHHHhhCCCcCCeEEEeCCe
Q psy11489 12 LITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGK 59 (433)
Q Consensus 12 ~i~V~VKt~~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrLIf~Gk 59 (433)
.++|++...+++..|.+..-...++|..++...||-+-+ |.|...
T Consensus 31 dvRIKfE~~gEKRIiqf~RPvkf~dl~qkv~~afGq~ld---l~y~nn 75 (111)
T 2c60_A 31 DVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQPLD---LHYMNN 75 (111)
T ss_dssp CEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHSSCCE---EEEECS
T ss_pred ceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCeee---eEEecc
Confidence 366666678899999999999999999999999987654 555543
No 263
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=20.30 E-value=50 Score=27.89 Aligned_cols=38 Identities=8% Similarity=0.068 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHhhCCCcCCeEEE--eCCeecCCCCCcccCC
Q psy11489 33 SVTDFKEAVAKKFNALPEQLCLI--FAGKIMKDHENLSNHN 71 (433)
Q Consensus 33 TV~~LK~~I~~~~~ip~~~qrLI--f~GkiLkD~~tLs~~g 71 (433)
+.+||+.+..+++++. ...+|+ ..|.+++|++.+..+.
T Consensus 55 SL~EL~~K~~~~l~l~-~~~~lvLeeDGT~VddEeYF~tLp 94 (122)
T 1d4b_A 55 TRQELLAKALETLLLN-GVLTLVLEEDGTAVDSEDFFQLLE 94 (122)
T ss_dssp CSSTHHHHHHHHHSCC-SSCEEEETTTTEEECSTHHHHHSS
T ss_pred CHHHHHHHHHHHhccC-CCcEEEEEeCCcEEechhHhhcCC
Confidence 5889999999999994 444444 5799999987655443
Done!