RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11489
(433 letters)
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 73
Score = 67.1 bits (164), Expect = 6e-15
Identities = 18/65 (27%), Positives = 40/65 (61%)
Query: 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
+ I +K+ ++K + + +++V FKEA+ K LI++GKI+KD + + ++++
Sbjct: 2 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHI 61
Query: 73 KDGLT 77
+DG +
Sbjct: 62 QDGHS 66
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 63.1 bits (153), Expect = 5e-13
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 2 AEAQQESEKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIM 61
A +E K+I + VKTPKEK+ + E++SV FKEA++K+F + +QL LIFAGKI+
Sbjct: 22 GSAAAPAEPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKIL 81
Query: 62 KDHENLSNHNMKDGLT 77
KD + L H + DGLT
Sbjct: 82 KDQDTLIQHGIHDGLT 97
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 83
Score = 60.0 bits (145), Expect = 3e-12
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 6 QESEKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHE 65
+E ++I + VKTP++ + E+++V FK+ ++K + ++L LIF GKI++D +
Sbjct: 4 REPSSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQD 63
Query: 66 NLSNHNMKDGLT 77
LS + DG T
Sbjct: 64 ILSQRGILDGST 75
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 95
Score = 58.8 bits (142), Expect = 1e-11
Identities = 10/75 (13%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 3 EAQQESEKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMK 62
+A K+L+ + + K K ++++ D++ ++ K+ + P +++ ++
Sbjct: 8 DAGGGVGKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVP 66
Query: 63 DHENLSNHNMKDGLT 77
+ + L + G
Sbjct: 67 EDKTLREIKVTSGAK 81
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 57.2 bits (138), Expect = 4e-11
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 8 SEKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNA---LPEQLCLIFAGKIMKDH 64
+ +++ P+ + S++ K+ +A K PE + LI+ G+ +KD
Sbjct: 14 DQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDD 73
Query: 65 ENLSNHNMKDGLT 77
+ L + ++ G T
Sbjct: 74 QTLDFYGIQPGST 86
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic
reticulum-resident ubiquitin-like domain member 1
protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 56.0 bits (135), Expect = 8e-11
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 13 ITIVVKTP---KEKQNIEIEEDASVTDFKEAVAKKFNAL--PEQLCLIFAGKIMKDHENL 67
+T++VK+P + + SV K +++ + PE LI++GK++ DH+ L
Sbjct: 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCL 67
Query: 68 S--NHNMKDGLT 77
+
Sbjct: 68 RDLLPKQEKRHV 79
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 90
Score = 54.2 bits (130), Expect = 3e-10
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 8 SEKKLITIVVKTPKEKQNI-EIEEDASVTDFKEAVAKKFNALPEQ---LCLIFAGKIMKD 63
S + I+VK ++ ++ + ED +V D K+ + LPE+ L L GK ++
Sbjct: 3 SGSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEN 62
Query: 64 HENLSNHNMKDGLT 77
L +K
Sbjct: 63 DVKLGALKLKPNTK 76
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 84
Score = 53.9 bits (129), Expect = 4e-10
Identities = 29/67 (43%), Positives = 48/67 (71%)
Query: 11 KLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNH 70
LI + VKTPK+K++ + + ++ KE ++++F A P+QL LIFAGKI+KD ++L+
Sbjct: 6 HLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQC 65
Query: 71 NMKDGLT 77
++DGLT
Sbjct: 66 GVRDGLT 72
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 52.2 bits (125), Expect = 1e-09
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 13 ITIVVKTPKEKQN-IEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
++I+V+ K + + E+ +V K+ V+ + L F GK ++D L +
Sbjct: 4 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 63
Query: 72 MKDGLT 77
+K T
Sbjct: 64 LKPLST 69
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone
regulator-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 52.6 bits (126), Expect = 1e-09
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 13 ITIVVKTPKEKQNIEIE-----EDASVTDFKEAVAKKFNALPEQLCLIFAGKIMK-DHEN 66
+T+ V EK ++ + + V D + V + LIF GK +K
Sbjct: 2 LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETP 61
Query: 67 LSNHNMKDGLT 77
LS ++DG
Sbjct: 62 LSALGIQDGCR 72
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 52.6 bits (126), Expect = 1e-09
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 13 ITIVVKTPKEKQN---------IEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKD 63
I + V ++K + V+ K + + + L + G +KD
Sbjct: 4 IKVQVPNMQDKTEWKLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKD 63
Query: 64 HENLSNHNMKDGLT 77
+L+ +NM +G
Sbjct: 64 SNSLAYYNMANGAV 77
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast
(Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
Length = 79
Score = 51.4 bits (123), Expect = 3e-09
Identities = 11/65 (16%), Positives = 27/65 (41%)
Query: 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
I + V + +I++ + EA AK+ + L ++ G ++ + + +M
Sbjct: 5 INLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDM 64
Query: 73 KDGLT 77
+D
Sbjct: 65 EDNDI 69
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 105
Score = 51.6 bits (123), Expect = 4e-09
Identities = 12/82 (14%), Positives = 32/82 (39%), Gaps = 17/82 (20%)
Query: 13 ITIVVKTPKEK-QNIEIEEDASVTDFKEAVAKKFNALPEQ---------------LCLIF 56
+T+ V + + + ++A+V D K+A+ + E+ L
Sbjct: 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67
Query: 57 AGKIMKDHEN-LSNHNMKDGLT 77
AG+ + + L ++ +++
Sbjct: 68 AGEKLTEDRKKLRDYGIRNRDE 89
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 50.6 bits (121), Expect = 5e-09
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 13 ITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
+ ++VKT + + +V +FKE +A + E+ LI+ G++++D + L +N
Sbjct: 1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60
Query: 72 MKD 74
+
Sbjct: 61 VGG 63
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog
A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 50.6 bits (121), Expect = 5e-09
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 13 ITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNAL---PEQLCLIFAGKIMKDHENLS 68
+TI +KT +++ I +E D +V KE + + LI+AGKI+ D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 69 NHNMKDG 75
++ + +
Sbjct: 63 DYRIDEK 69
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 96
Score = 49.6 bits (118), Expect = 2e-08
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 13 ITIVVKTPKEK-QNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
++ VK KEK + +E+ D FK + P + ++ G +KD ++ N
Sbjct: 8 YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKD-DDWGNIK 66
Query: 72 MKDGLT 77
MK+G+T
Sbjct: 67 MKNGMT 72
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger
domain-containing protein 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 48.7 bits (116), Expect = 2e-08
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 15 IVVKTPKEKQNI---EIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
I V+T +Q + V + + + + F+ P L + GK M+D L ++
Sbjct: 3 IQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYE 62
Query: 72 MKDGLT 77
++ T
Sbjct: 63 VRLNDT 68
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 73
Score = 48.3 bits (115), Expect = 3e-08
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMK 73
I VKT K+ I+IE ++ KE V +K P Q LI+AGK + D + ++N++
Sbjct: 3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 62
Query: 74 DGLT 77
G
Sbjct: 63 GGSV 66
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 100
Score = 48.8 bits (116), Expect = 4e-08
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 1 MAEAQQESEKKLITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGK 59
+ E +I +V K+ ++ D ++ D K+ +A + ++ L
Sbjct: 17 LVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYT 76
Query: 60 IMKDHENLSNHNMKDGLT 77
I KDH +L ++ + DG+
Sbjct: 77 IFKDHVSLGDYEIHDGMN 94
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like
protein, OASL {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 48.4 bits (115), Expect = 4e-08
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 13 ITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
I + VK P I ++ + K+ + + +Q L F G++++D L +
Sbjct: 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 67
Query: 72 MKDGLT 77
++D T
Sbjct: 68 IQDSDT 73
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger
domain-containing protein 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 48.0 bits (114), Expect = 4e-08
Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 15 IVVKTPKEKQNI---EIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
I V+T + ++ A++ + +E V F+ PE L + GK +++ L +++
Sbjct: 3 IQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYD 62
Query: 72 MKDGLT 77
+
Sbjct: 63 VGLNDI 68
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 101
Score = 48.0 bits (114), Expect = 7e-08
Identities = 12/92 (13%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 6 QESEKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFN-------ALPEQLCLIFAG 58
+ + I + + + +V+ KE V ++ +++ LI AG
Sbjct: 3 EVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAG 62
Query: 59 KIMKDHENLSNHNMKDGLTSLKQLPLTKEIMH 90
K++++ + + ++ + MH
Sbjct: 63 KVLENSKTVKDYRSPVSNLAGAVT-----TMH 89
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 47.1 bits (112), Expect = 1e-07
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 13 ITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNM 72
+ ++++ K + +E ++V + K V P++ L +++ D + L
Sbjct: 2 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGF 61
Query: 73 KDGLTSLKQLPLT 85
T+ Q P T
Sbjct: 62 TSQ-TARPQAPAT 73
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 45.4 bits (108), Expect = 2e-07
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 343 PPEVRYRSQLDQLTAMGFVNREANLQ 368
PEVR+ +++ L AMGFVN ANLQ
Sbjct: 3 APEVRFSKEMECLQAMGFVNYNANLQ 28
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 46.1 bits (109), Expect = 3e-07
Identities = 8/74 (10%), Positives = 24/74 (32%), Gaps = 9/74 (12%)
Query: 13 ITIVVKTPKEKQNIE--IEEDASVTDFKEAVAKKFNALPEQLCLIFAGK-------IMKD 63
+ + + + E ++ +FK + + + L G + ++
Sbjct: 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQE 67
Query: 64 HENLSNHNMKDGLT 77
L ++ + DG
Sbjct: 68 DALLGSYPVDDGCR 81
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 100
Score = 46.5 bits (110), Expect = 3e-07
Identities = 6/66 (9%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 13 ITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
+ + + K+++ +E + + + +A+ F + ++ K ++ + L
Sbjct: 20 VFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQG 79
Query: 72 MKDGLT 77
+ +
Sbjct: 80 VAHNVK 85
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 77
Score = 45.1 bits (107), Expect = 4e-07
Identities = 9/66 (13%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 13 ITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
I + V + + +++ + KE+ ++ L +F G+ + D+
Sbjct: 3 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62
Query: 72 MKDGLT 77
M++
Sbjct: 63 MEEEDV 68
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 44.9 bits (106), Expect = 6e-07
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIF--AGKIMKDHENLSNHN 71
+ VK + + + SV++ K + +K Q L +G ++D L++
Sbjct: 3 LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQG 62
Query: 72 MKDGLT 77
+ G T
Sbjct: 63 LGPGST 68
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 44
Score = 43.4 bits (103), Expect = 7e-07
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 344 PEVRYRSQLDQLTAMGFVNREANLQ 368
PE RY QL QL MGF + + N+
Sbjct: 1 PEERYEHQLRQLNDMGFFDFDRNVA 25
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 116
Score = 44.6 bits (105), Expect = 2e-06
Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 9/99 (9%)
Query: 12 LITIVVKTPKEK-QNIEIEEDASVTDFKEAV--------AKKFNALPEQLCLIFAGKIMK 62
+I + + K + + S +D + V ++ + P L LI+ G+ +
Sbjct: 16 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH 75
Query: 63 DHENLSNHNMKDGLTSLKQLPLTKEIMHPKEEPTLMSEQ 101
+ L + G T++ L + + P +
Sbjct: 76 GNVTLGALKLPFGKTTVMHLVARETLPEPNSQGQRSGPS 114
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 78
Score = 43.3 bits (102), Expect = 2e-06
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMK 73
+ V+ +E++ D S+ KE VAK+ +QL +IFAGK + +H + N +++
Sbjct: 5 VFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLE 64
Query: 74 DGLT 77
Sbjct: 65 QQSI 68
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 61
Score = 42.8 bits (101), Expect = 2e-06
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 336 QGGNAQAPPEVRYRSQLDQLTAMGFVNREANLQ 368
E RY+ +L++L A+GF NR+ANLQ
Sbjct: 10 TALPTSLFTEGRYQQELEELKALGFANRDANLQ 42
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B
(Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 43.5 bits (102), Expect = 3e-06
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 15 IVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNAL---PEQLCLIFAGKIMKDHENLSNH 70
+ +KT +++ I+I+ + +V KE + + LI+AGKI+ D L +
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 71 NMKDGLTSLKQLPLTKEIMHPKEEPTLMSEQLHL 104
+ + + + +TK P + H
Sbjct: 63 KIDEK--NFVVVMVTKPKAVSTPAPATLEHHHHH 94
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 42.2 bits (99), Expect = 4e-06
Identities = 7/66 (10%), Positives = 18/66 (27%), Gaps = 1/66 (1%)
Query: 13 ITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
+ ++ K + + +V K + P F+G+ + D
Sbjct: 4 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63
Query: 72 MKDGLT 77
+
Sbjct: 64 IPKDYV 69
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500
(2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 42.2 bits (99), Expect = 8e-06
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 13 ITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIM-KDHENLSNH 70
I + +K + + + +V K F Q+ LI+ G+++ LS+
Sbjct: 8 INVRLKFLNDTEELAVARPEDTVGTLKSKY---FPGQESQMKLIYQGRLLQDPARTLSSL 64
Query: 71 NMKDGLT 77
N+ +
Sbjct: 65 NITNNCV 71
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Nematode (Caenorhabditis elegans) [TaxId:
6239]}
Length = 90
Score = 41.8 bits (98), Expect = 9e-06
Identities = 8/77 (10%), Positives = 23/77 (29%), Gaps = 7/77 (9%)
Query: 8 SEKKLITIVVKTPKEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGK-------I 60
+E + I + S+ D K+ + + + + +
Sbjct: 2 TEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGEL 61
Query: 61 MKDHENLSNHNMKDGLT 77
++L + ++DG
Sbjct: 62 TDGAKSLKDLGVRDGYR 78
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 41.2 bits (96), Expect = 2e-05
Identities = 10/67 (14%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 13 ITIVVKTPKEKQ-NIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHE-NLSNH 70
+ V + E ++++ D +++F+ + E+ +++ +++ D +L ++
Sbjct: 12 VYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSY 71
Query: 71 NMKDGLT 77
+KDG
Sbjct: 72 GLKDGDM 78
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 97
Score = 39.9 bits (93), Expect = 5e-05
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 6 QESEKKLITIVVKTPK--EKQNIEIEEDASVT--DFKEAVAKKFNALPEQLCLIFAGKIM 61
S +L+T+ +K E+Q +E + S+T K +++ +L L + M
Sbjct: 3 SGSSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKM 62
Query: 62 K--------DHENLSNHNMKDGLT 77
D + L +++++G
Sbjct: 63 PGREIELENDLQPLQFYSVENGDC 86
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal
domain {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 111
Score = 38.8 bits (90), Expect = 2e-04
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 5 QQESEKKLITIVVKTPKEKQNIEIE---EDASVTDFKEAVAKKFNALPEQLCLIFAGKIM 61
Q I + + Q +EI +V KE +A + + L +
Sbjct: 22 AQHPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFL 81
Query: 62 KDHENLSNHNMKDGLT 77
KD+ +L+++N+ G
Sbjct: 82 KDNMSLAHYNVGAGEI 97
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 35.8 bits (83), Expect = 4e-04
Identities = 14/21 (66%), Positives = 19/21 (90%)
Query: 348 YRSQLDQLTAMGFVNREANLQ 368
++ QL+QL +MGF+NREANLQ
Sbjct: 2 FQVQLEQLRSMGFLNREANLQ 22
>d1lsha2 f.7.1.1 (A:17-284) Lipovitellin-phosvitin complex;
beta-sheet shell regions {Lamprey (Ichthyomyzon
unicuspis) [TaxId: 30308]}
Length = 268
Score = 31.5 bits (71), Expect = 0.17
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 5/66 (7%)
Query: 80 KQLPLTKEIMHPKEEPTLMSEQLHLVLVRW---EVSGICHHENLSNH--NMKDGLTSLKQ 134
P + + V + + I +++ N+ G+ +L Q
Sbjct: 60 GPWPSDSFYPLTGGYDHFIQQLEVPVRFDYSAGRIGDIYAPPQVTDTAVNIVRGILNLFQ 119
Query: 135 LPLTKE 140
L L K
Sbjct: 120 LSLKKN 125
>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 28.9 bits (65), Expect = 0.22
Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 13 ITIVVKTP-KEKQNIEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHN 71
I + V +I+ ++ +A ++ Q+ F G+ + + + +
Sbjct: 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 61
Query: 72 MKDG 75
M+D
Sbjct: 62 MEDE 65
>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox
component of NADPH oxidase) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 82
Score = 27.4 bits (61), Expect = 0.87
Identities = 10/49 (20%), Positives = 21/49 (42%)
Query: 26 IEIEEDASVTDFKEAVAKKFNALPEQLCLIFAGKIMKDHENLSNHNMKD 74
++ + + ++ V+KK E L + + + LS +MKD
Sbjct: 18 MKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKD 66
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 343
Score = 29.3 bits (64), Expect = 1.0
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 8/87 (9%)
Query: 270 RMYRDIQEPMLNAATQQFSRNPYESNSSGGNPGRVKAPFRRSKRYLGPRQCAR----PSS 325
Y + +L A N Y+S ++ ++ RY P++ A P
Sbjct: 250 GSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPE 309
Query: 326 SLSTPGLANNQG----GNAQAPPEVRY 348
+ Q GN+ V
Sbjct: 310 FGFPEKITVKQRYRLLGNSLNVHVVAK 336
>d2hs5a2 a.78.1.1 (A:94-231) Putative transcriptional regulator
RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Length = 138
Score = 27.1 bits (59), Expect = 2.6
Identities = 2/97 (2%), Positives = 24/97 (24%), Gaps = 4/97 (4%)
Query: 189 PEALSAIQQIQAGIEQLRTAAPGMEWNFRNPEINHML-NNPELLRQTMEMARNP---SML 244
++ + ++ A + + + + + + + ++
Sbjct: 16 CAGVNGFDPATGDLSRVAEALDLADERYAVEDWTGVGTADIHFHSALASLNNSNRIDELM 75
Query: 245 QELMRTQDRALSNLESIPGGYSALQRMYRDIQEPMLN 281
+ + ++ + +I + +
Sbjct: 76 RSVWNEARLVFHVMDDAHRFHGPYLTRNHEIYDALAA 112
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 27.4 bits (59), Expect = 3.1
Identities = 9/70 (12%), Positives = 21/70 (30%)
Query: 213 EWNFRNPEINHMLNNPELLRQTMEMARNPSMLQELMRTQDRALSNLESIPGGYSALQRMY 272
+ + E + + + R D+ N++ Y + Y
Sbjct: 124 DSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQVKQNIQKFINRYWKAEDYY 183
Query: 273 RDIQEPMLNA 282
+ +EP+ A
Sbjct: 184 LETEEPIKRA 193
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 73
Score = 25.3 bits (55), Expect = 4.8
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 324 SSSLSTPG-LANNQGGNAQAPPEVRYRSQLDQLTAMGFVNREANLQG 369
SS S +AN Q+ +L AMGF +R
Sbjct: 4 GSSGSRQAPIANAAVLPQSQGRVAASEEQIQKLVAMGF-DRTQVEVA 49
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 25.7 bits (56), Expect = 8.4
Identities = 12/63 (19%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 144 PKEEPILMSEQLHLVLVRWEAQMQQMLPQFLQQMQNPEIQGMMANPEALSAIQQIQAGIE 203
P+E+ ++ E+L ++ + + L ++ N E+ M+ +PE+L + ++ +
Sbjct: 63 PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRS--KVDEAVA 120
Query: 204 QLR 206
L+
Sbjct: 121 VLQ 123
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.128 0.360
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,509,562
Number of extensions: 68377
Number of successful extensions: 287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 77
Length of query: 433
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 345
Effective length of database: 1,199,356
Effective search space: 413777820
Effective search space used: 413777820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.9 bits)