BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11490
(147 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From
Pyrococcus Abyssi
pdb|1YR7|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp-Gamma-S
Bound Form From Pyrococcus Abyssi
pdb|1YR8|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp Bound Form
From Pyrococcus Abyssi
pdb|1YR9|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Po4
Bound Form From Pyrococcus Abyssi
pdb|1YRA|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRA|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRB|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|1YRB|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|2OXR|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi (After Gtp Hydrolysis)
Length = 262
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVD 76
+ ++ +G AGSGKT+ +F YL D YV NLD +++PY ++D
Sbjct: 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV-NLDTGVKELPYEPSID 63
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 34.3 bits (77), Expect = 0.028, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSYL 50
E K KP L+++G+ GSGKT+ V K + Y
Sbjct: 95 EIKEKPTILLMVGIQGSGKTTTVAKLARYF 124
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 22/93 (23%)
Query: 10 SGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDV 69
S PA++G+ P FK L+++G G+GKT+FVK+ + ++K+
Sbjct: 2 SAPAANGEV-PTFK-----LVLVGDGGTGKTTFVKRHLTGEFEKK--------------- 40
Query: 70 PYLVNVDPACRDVPYLVNVGELSMLLLNGNKLE 102
Y+ + + + N GE+ + + LE
Sbjct: 41 -YIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
>pdb|2AXN|A Chain A, Crystal Structure Of The Human Inducible Form 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|2DWO|A Chain A, Pfkfb3 In Complex With Adp And Pep
pdb|2DWP|A Chain A, A Pseudo Substrate Complex Of 6-Phosphofructo-2-Kinase
Of Pfkfb
pdb|2I1V|B Chain B, Crystal Structure Of Pfkfb3 In Complex With Adp And
Fructose-2,6-Bisphosphate
pdb|3QPU|A Chain A, Pfkfb3 In Complex With Ppi
pdb|3QPV|A Chain A, Pfkfb3 Trapped In A Phospho-Enzyme Intermediate State
pdb|3QPW|A Chain A, Pfkfb3 In Complex With Aluminum Tetrafluoride
Length = 520
Score = 30.4 bits (67), Expect = 0.34, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 19 GPEFKSKPICLIVLGMAGSGKTSFVKKFSSYL 50
GP+ + P ++++G+ GKT KK + YL
Sbjct: 28 GPKLTNSPTVIVMVGLPARGKTYISKKLTRYL 59
>pdb|1LS1|A Chain A, T. Aquaticus Ffh Ng Domain At 1.1a Resolution
Length = 295
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 20 PEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD---PACRD 68
P K + + +V G+ GSGKT+ K + Y K P ++ D PA R+
Sbjct: 93 PVLKDRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
>pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|1OKK|A Chain A, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2CNW|A Chain A, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|B Chain B, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|C Chain C, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2J7P|A Chain A, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|B Chain B, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|1NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|2XKV|A Chain A, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 294
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 20 PEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD---PACRD 68
P K + + +V G+ GSGKT+ K + Y K P ++ D PA R+
Sbjct: 93 PVLKDRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
>pdb|2NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 293
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 20 PEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD---PACRD 68
P K + + +V G+ GSGKT+ K + Y K P ++ D PA R+
Sbjct: 92 PVLKDRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 142
>pdb|1RJ9|B Chain B, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 300
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 20 PEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD---PACRD 68
P K + + +V G+ GSGKT+ K + Y K P ++ D PA R+
Sbjct: 93 PVLKDRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
>pdb|1FFH|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 20 PEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD---PACRD 68
P K + + +V G+ GSGKT+ K + Y K P ++ D PA R+
Sbjct: 92 PVLKDRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 142
>pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1RY1|U Chain U, Structure Of The Signal Recognition Particle Interacting
With The Elongation-Arrested Ribosome
Length = 296
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 20 PEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD---PACRD 68
P K + + +V G+ GSGKT+ K + Y K P ++ D PA R+
Sbjct: 93 PVLKDRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
>pdb|1O87|A Chain A, A New Mggdp Complex Of The Ffh Ng Domain
pdb|1O87|B Chain B, A New Mggdp Complex Of The Ffh Ng Domain
pdb|2C04|A Chain A, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2C04|B Chain B, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2J45|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J45|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
Length = 297
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 20 PEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD---PACRD 68
P K + + +V G+ GSGKT+ K + Y K P ++ D PA R+
Sbjct: 93 PVLKDRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
>pdb|2C03|A Chain A, Gdp Complex Of Srp Gtpase Ffh Ng Domain
pdb|2C03|B Chain B, Gdp Complex Of Srp Gtpase Ffh Ng Domain
Length = 297
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 20 PEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD---PACRD 68
P K + + +V G+ GSGKT+ K + Y K P ++ D PA R+
Sbjct: 93 PVLKDRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
>pdb|2IY3|A Chain A, Structure Of The E. Coli Signal Recognition Particle Bound
To A Translating Ribosome
Length = 432
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 20 PEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD---PACRD 68
P K + + +V G+ GSGKT+ K + Y K P ++ D PA R+
Sbjct: 93 PVLKDRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 20 PEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD---PACRD 68
P K + + +V G+ GSGKT+ K + Y K P ++ D PA R+
Sbjct: 93 PVLKDRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
>pdb|1OT3|A Chain A, Crystal Structure Of Drosophila Deoxyribonucleotide
Kinase Complexed With The Substrate Deoxythymidine
pdb|1OT3|B Chain B, Crystal Structure Of Drosophila Deoxyribonucleotide
Kinase Complexed With The Substrate Deoxythymidine
pdb|1OT3|C Chain C, Crystal Structure Of Drosophila Deoxyribonucleotide
Kinase Complexed With The Substrate Deoxythymidine
pdb|1OT3|D Chain D, Crystal Structure Of Drosophila Deoxyribonucleotide
Kinase Complexed With The Substrate Deoxythymidine
pdb|1OT3|E Chain E, Crystal Structure Of Drosophila Deoxyribonucleotide
Kinase Complexed With The Substrate Deoxythymidine
pdb|1OT3|F Chain F, Crystal Structure Of Drosophila Deoxyribonucleotide
Kinase Complexed With The Substrate Deoxythymidine
pdb|1OT3|G Chain G, Crystal Structure Of Drosophila Deoxyribonucleotide
Kinase Complexed With The Substrate Deoxythymidine
pdb|1OT3|H Chain H, Crystal Structure Of Drosophila Deoxyribonucleotide
Kinase Complexed With The Substrate Deoxythymidine
pdb|2VP0|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP0|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
Length = 250
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 13 ASSGDHGPEFK--SKPICLIVLGMAGSGKTSFVKKFSSYLYD 52
AS G ++ ++P +++ G GSGKT+++ F Y D
Sbjct: 5 ASCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKND 46
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 13 ASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYL 72
A+ G+ +FK L+++G G+GKT+FVK+ +L + + YV L + +
Sbjct: 7 AAQGEPQVQFK-----LVLVGDGGTGKTTFVKR---HLTGESEKKYVATLGVEVHPLVFH 58
Query: 73 VNVDP 77
N P
Sbjct: 59 TNRGP 63
>pdb|3P42|A Chain A, Structure Of Gfcc (Ymcb), Protein Encoded By The E. Coli
Group 4 Capsule Operon
pdb|3P42|B Chain B, Structure Of Gfcc (Ymcb), Protein Encoded By The E. Coli
Group 4 Capsule Operon
pdb|3P42|C Chain C, Structure Of Gfcc (Ymcb), Protein Encoded By The E. Coli
Group 4 Capsule Operon
pdb|3P42|D Chain D, Structure Of Gfcc (Ymcb), Protein Encoded By The E. Coli
Group 4 Capsule Operon
Length = 236
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 5 KVSDNSGPASSGDHGPEFKSKPICLIVLG-MAGSGKTSFV--KKFSSYLYDKQDNPYVIN 61
+V +NS P GD+ +P+ + +LG ++G+G+ ++ + + YL QD+P +
Sbjct: 106 RVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAGQLPWLAGRSVTDYL---QDHPRLAG 162
Query: 62 LD 63
D
Sbjct: 163 AD 164
>pdb|1J90|A Chain A, Crystal Structure Of Drosophila Deoxyribonucleoside
Kinase
pdb|1J90|B Chain B, Crystal Structure Of Drosophila Deoxyribonucleoside
Kinase
pdb|1OE0|A Chain A, Crystal Structure Of Drosophila Deoxyribonucleoside
Kinase In Complex With Dttp
pdb|1OE0|B Chain B, Crystal Structure Of Drosophila Deoxyribonucleoside
Kinase In Complex With Dttp
pdb|1OE0|C Chain C, Crystal Structure Of Drosophila Deoxyribonucleoside
Kinase In Complex With Dttp
pdb|1OE0|D Chain D, Crystal Structure Of Drosophila Deoxyribonucleoside
Kinase In Complex With Dttp
pdb|2JJ8|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2JJ8|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2JJ8|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2JJ8|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP2|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP2|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP4|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP4|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP4|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP4|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP5|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP5|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|E Chain E, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|F Chain F, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|G Chain G, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|H Chain H, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|E Chain E, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|F Chain F, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|G Chain G, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|H Chain H, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VQS|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VQS|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VQS|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VQS|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VPP|A Chain A, Drosophila Melanogaster Deoxyribonucleoside Kinase
Successfully Activates Gemcitabine In Transduced Cancer
Cell Lines
pdb|2VPP|B Chain B, Drosophila Melanogaster Deoxyribonucleoside Kinase
Successfully Activates Gemcitabine In Transduced Cancer
Cell Lines
Length = 230
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 13 ASSGDHGPEFK--SKPICLIVLGMAGSGKTSFVKKFSSYLYD 52
AS G ++ ++P +++ G GSGKT+++ F Y D
Sbjct: 5 ASCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKND 46
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 13 ASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYL 72
A+ G+ +FK L+++G G+GKT+FVK+ + ++K+ YV L + +
Sbjct: 4 AAQGEPQVQFK-----LVLVGDGGTGKTTFVKRHLTGEFEKK---YVATLGVEVHPLVFH 55
Query: 73 VNVDP 77
N P
Sbjct: 56 TNRGP 60
>pdb|1ZMX|A Chain A, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|B Chain B, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|G Chain G, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|H Chain H, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|E Chain E, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|F Chain F, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|C Chain C, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|D Chain D, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZM7|A Chain A, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
pdb|1ZM7|B Chain B, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
pdb|1ZM7|C Chain C, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
pdb|1ZM7|D Chain D, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
Length = 230
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 13 ASSGDHGPEFK--SKPICLIVLGMAGSGKTSFVKKFSSYLYD 52
AS G ++ ++P +++ G GSGKT+++ F Y D
Sbjct: 5 ASCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKND 46
>pdb|2JCS|A Chain A, Active Site Mutant Of Dnk From D. Melanogaster With Dttp
Bound
pdb|2JCS|B Chain B, Active Site Mutant Of Dnk From D. Melanogaster With Dttp
Bound
Length = 230
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 13 ASSGDHGPEFK--SKPICLIVLGMAGSGKTSFVKKFSSYLYD 52
AS G ++ ++P +++ G GSGKT+++ F Y D
Sbjct: 5 ASCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKND 46
>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs
Length = 430
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60
P +++ G+ G+GKT+ V K +L +K ++
Sbjct: 99 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLV 133
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 13 ASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYL 72
A+ G+ +FK L+++G G+GKT+FVK+ + ++K+ YV L + +
Sbjct: 2 AAQGEPQVQFK-----LVLVGDGGTGKTTFVKRHLTGEFEKK---YVATLGVEVHPLVFH 53
Query: 73 VNVDP 77
N P
Sbjct: 54 TNRGP 58
>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 433
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60
P +++ G+ G+GKT+ V K +L +K ++
Sbjct: 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLV 134
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 13 ASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYL 72
A+ G+ +FK L+++G G+GKT+FVK+ + ++K+ YV L + +
Sbjct: 2 AAQGEPQVQFK-----LVLVGDGGTGKTTFVKRHLTGEFEKK---YVATLGVEVHPLVFH 53
Query: 73 VNVDP 77
N P
Sbjct: 54 TNRGP 58
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With
Its Cargo (Kap60p) And Rangtp
Length = 176
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 13 ASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYL 72
A+ G+ +FK L+++G G+GKT+FVK+ + ++K+ YV L + +
Sbjct: 2 AAQGEPQVQFK-----LVLVGDGGTGKTTFVKRHLTGEFEKK---YVATLGVEVHPLVFH 53
Query: 73 VNVDP 77
N P
Sbjct: 54 TNRGP 58
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 13 ASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYL 72
A+ G+ +FK L+++G G+GKT+FVK+ + ++K+ YV L + +
Sbjct: 7 AAQGEPQVQFK-----LVLVGDGGTGKTTFVKRHLTGEFEKK---YVATLGVEVHPLVFH 58
Query: 73 VNVDP 77
N P
Sbjct: 59 TNRGP 63
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
Length = 216
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 13 ASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYL 72
A+ G+ +FK L+++G G+GKT+FVK+ + ++K+ YV L + +
Sbjct: 2 AAQGEPQVQFK-----LVLVGDGGTGKTTFVKRHLTGEFEKK---YVATLGVEVHPLVFH 53
Query: 73 VNVDP 77
N P
Sbjct: 54 TNRGP 58
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 13 ASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYL 72
A+ G+ +FK L+++G G+GKT+FVK+ + ++K+ YV L + +
Sbjct: 2 AAQGEPQVQFK-----LVLVGDGGTGKTTFVKRHLTGEFEKK---YVATLGVEVHPLVFH 53
Query: 73 VNVDP 77
N P
Sbjct: 54 TNRGP 58
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 13 ASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYL 72
A+ G+ +FK L+++G G+GKT+FVK+ + ++K+ YV L + +
Sbjct: 2 AAQGEPQVQFK-----LVLVGDGGTGKTTFVKRHLTGEFEKK---YVATLGVEVHPLVFH 53
Query: 73 VNVDP 77
N P
Sbjct: 54 TNRGP 58
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 13 ASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNP 57
A+ G+ +FK L+++G G+GKT+FVK+ + ++K+ P
Sbjct: 2 AAQGEPQVQFK-----LVLVGDGGTGKTTFVKRHLTGEFEKKYVP 41
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 13 ASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYL 72
A+ G+ +FK L+++G G+GKT+FVK+ + ++K+ YV L + +
Sbjct: 2 AAQGEPQVQFK-----LVLVGDGGTGKTTFVKRHLTGEFEKK---YVATLGVEVHPLVFH 53
Query: 73 VNVDP 77
N P
Sbjct: 54 TNRGP 58
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63
++++G+ GSGKT+ K + Y+ + P +I D
Sbjct: 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 13 ASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNP 57
A+ G+ +FK L+++G G+GKT+FVK+ + ++K+ P
Sbjct: 2 AAQGEPQVQFK-----LVLVGDGGTGKTTFVKRHLTGEFEKKYVP 41
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 KSKPICLIVLGMAGSGKTSFVKKFS 47
K + + L++LG+ +GKT+ +KKF+
Sbjct: 15 KERELRLLMLGLDNAGKTTILKKFN 39
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 KSKPICLIVLGMAGSGKTSFVKKFS 47
K + + L++LG+ +GKT+ +KKF+
Sbjct: 13 KERELRLLMLGLDNAGKTTILKKFN 37
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 KSKPICLIVLGMAGSGKTSFVKKFS 47
K + + L++LG+ +GKT+ +KKF+
Sbjct: 15 KERELRLLMLGLDNAGKTTILKKFN 39
>pdb|3BU7|A Chain A, Crystal Structure And Biochemical Characterization Of
Gdosp, A Gentisate 1,2-Dioxygenase From Silicibacter
Pomeroyi
pdb|3BU7|B Chain B, Crystal Structure And Biochemical Characterization Of
Gdosp, A Gentisate 1,2-Dioxygenase From Silicibacter
Pomeroyi
Length = 394
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 93 MLLLNGNKLEHQILNFQKLATWMAFGFAFMRSSCVQANFIKMGPN 137
+L NG EH IL W G ++C++ANF ++ PN
Sbjct: 172 VLTPNGTWHEHGILESGTECIWQD-GLDIPLTNCLEANFYEVHPN 215
>pdb|1GSO|A Chain A, Glycinamide Ribonucleotide Synthetase (Gar-Syn) From E.
Coli
Length = 431
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 31 VLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67
V GMA G T ++ + DKQ NP VI + CR
Sbjct: 258 VKGMAAEGNTYTGFLYAGLMIDKQGNPKVIEFN--CR 292
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal Ii)
Length = 176
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 29 LIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDP 77
L+++G G+GKT+FVK+ + ++K+ YV L + + N P
Sbjct: 9 LVLVGDGGTGKTTFVKRHLTGEFEKK---YVATLGVEVHPLVFHTNRGP 54
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 29 LIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDP 77
L+++G G+GKT+FVK+ + ++K+ YV L + + N P
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKK---YVATLGVEVHPLVFHTNRGP 51
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 27.3 bits (59), Expect = 3.4, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 29 LIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63
++++G+ GSGKT+ K + Y+ + P +I D
Sbjct: 102 ILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 21/83 (25%)
Query: 20 PEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPAC 79
P FK L+++G G+GKT+FVK+ + ++K+ Y+ +
Sbjct: 4 PTFK-----LVLVGDGGTGKTTFVKRHLTGEFEKK----------------YIATIGVEV 42
Query: 80 RDVPYLVNVGELSMLLLNGNKLE 102
+ + N GE+ + + LE
Sbjct: 43 HPLSFYTNFGEIKFDVWDTAGLE 65
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 21/83 (25%)
Query: 20 PEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPAC 79
P FK L+++G G+GKT+FVK+ + ++K+ Y+ +
Sbjct: 3 PTFK-----LVLVGDGGTGKTTFVKRHLTGEFEKK----------------YIATIGVEV 41
Query: 80 RDVPYLVNVGELSMLLLNGNKLE 102
+ + N GE+ + + LE
Sbjct: 42 HPLSFYTNFGEIKFDVWDTAGLE 64
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 24 SKPICLIVLGMAGSGKTSFVKKFSSYL 50
KP ++ +G GSGKT+ + K +++L
Sbjct: 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 23 KSKPICLIVLGMAG---SGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66
K KP+ V G++G +GK++F++ F L ++ V+ +DP+
Sbjct: 69 KGKPLAFRV-GLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114
>pdb|1VDY|A Chain A, Nmr Structure Of The Hypothetical Enth-Vhs Domain
At3g16270 From Arabidopsis Thaliana
pdb|2DCP|A Chain A, Fully Automated Nmr Structure Determination Of The
Enth-Vhs Domain At3g16270 From Arabidopsis Thaliana
Length = 140
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 19 GPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLV 73
P +K + IC ++ S S VK+FS ++ + DN I A R + Y V
Sbjct: 27 APVYKLEEICDLLR----SSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAV 77
>pdb|3UIE|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And
Aps
pdb|3UIE|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And
Aps
pdb|3UIE|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And
Aps
pdb|4FXP|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
Length = 200
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 28 CLI-VLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63
C+I V G++GSGK++ + LY K Y+++ D
Sbjct: 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62
>pdb|2VN8|A Chain A, Crystal Structure Of Human Reticulon 4 Interacting Protein
1 In Complex With Nadph
pdb|2VN8|B Chain B, Crystal Structure Of Human Reticulon 4 Interacting Protein
1 In Complex With Nadph
Length = 375
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 15 SGDHGPEFKS-KPICLIVLGMAGSGKT---SFVKKFSSYLYDKQDNPYVINLD 63
SG + KS KP I+ + GS +T F+KK+S Y P+++N+D
Sbjct: 236 SGSVEEQLKSLKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMD 288
>pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 24 SKPICLIVLGMAGSGKTSFVKKFSSYL 50
KP + +G GSGKT+ + K +++L
Sbjct: 127 EKPYVIXFVGFNGSGKTTTIAKLANWL 153
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1
INITIATORS Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDK 53
+ KP + + G+ G+GKT+ VK S L+ K
Sbjct: 42 EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72
>pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|C Chain C, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|E Chain E, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|G Chain G, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|B Chain B, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
Length = 440
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQ 54
P ++++G+ GSGKT+ K +Y Y K+
Sbjct: 104 PFIIMLVGVQGSGKTTTAGKL-AYFYKKR 131
>pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition
Particle
Length = 433
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQ 54
P ++++G+ GSGKT+ K +Y Y K+
Sbjct: 97 PFIIMLVGVQGSGKTTTAGKL-AYFYKKR 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,553,294
Number of Sequences: 62578
Number of extensions: 172306
Number of successful extensions: 812
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 770
Number of HSP's gapped (non-prelim): 61
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)