BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11490
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VCE2|GPN1_MOUSE GPN-loop GTPase 1 OS=Mus musculus GN=Gpn1 PE=1 SV=1
Length = 372
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 42/51 (82%)
Query: 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVD 76
P+CL+VLGMAGSGKT+FV++ + +L++K PYVINLDPA +VP+ N+D
Sbjct: 19 PVCLLVLGMAGSGKTTFVQRLTGHLHNKGCPPYVINLDPAVHEVPFPANID 69
>sp|A4FUD1|GPN1_BOVIN GPN-loop GTPase 1 OS=Bos taurus GN=GPN1 PE=2 SV=1
Length = 373
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 10 SGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDV 69
S S GP P CL+VLGMAGSGKT+FV++ + YL+ + PYVINLDPA +V
Sbjct: 6 SATESQASGGPR---PPACLLVLGMAGSGKTTFVQRLTGYLHSQGCPPYVINLDPAVHEV 62
Query: 70 PYLVNVDPACRDV 82
P+ N+D RD
Sbjct: 63 PFPANID--IRDT 73
>sp|Q9HCN4|GPN1_HUMAN GPN-loop GTPase 1 OS=Homo sapiens GN=GPN1 PE=1 SV=1
Length = 374
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 43/57 (75%), Gaps = 2/57 (3%)
Query: 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDV 82
P+CL+VLGMAGSGKT+FV++ + +L+ + PYVINLDPA +VP+ N+D RD
Sbjct: 19 PVCLLVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDPAVHEVPFPANID--IRDT 73
>sp|P46577|GPN1_CAEEL GPN-loop GTPase 1 homolog OS=Caenorhabditis elegans GN=gop-2 PE=1
SV=1
Length = 355
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%), Gaps = 6/81 (7%)
Query: 1 MAE--EKVSDNSGPAS---SGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQD 55
MAE E + +S AS S GP KP ++VLGMAGSGKT+FV++ +++L+ ++
Sbjct: 1 MAEKAENLPSSSAEASEEPSPQTGPNVNQKP-SILVLGMAGSGKTTFVQRLTAFLHARKT 59
Query: 56 NPYVINLDPACRDVPYLVNVD 76
PYVINLDPA VPY VNVD
Sbjct: 60 PPYVINLDPAVSKVPYPVNVD 80
>sp|O42906|NPA3_SCHPO GTPase npa3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=npa3 PE=1 SV=1
Length = 367
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 43/54 (79%)
Query: 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVD 76
+ KP +IV+GMAGSGKT+F+++ +++L+ K PY++NLDPA R++PY N+D
Sbjct: 5 EKKPCAIIVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPYEANID 58
>sp|Q54C25|GPN1_DICDI GPN-loop GTPase 1 homolog OS=Dictyostelium discoideum GN=xab1
PE=3 SV=1
Length = 396
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Query: 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDV 82
+PI +IVLGMAGSGKT+ +++ ++LY+ + Y+INLDPA +PY N+D RD
Sbjct: 33 QPINIIVLGMAGSGKTTLLQRIRAHLYENKIPGYIINLDPAVSKLPYTPNID--IRDT 88
>sp|P47122|NPA3_YEAST GTPase NPA3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NPA3 PE=1 SV=1
Length = 385
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVD 76
+I +GMAGSGKT+F+++ +S+L ++ PYVINLDPA VPY N+D
Sbjct: 5 TIICIGMAGSGKTTFMQRLNSHLRAEKTPPYVINLDPAVLRVPYGANID 53
>sp|Q750Q9|GPN3_ASHGO GPN-loop GTPase 3 homolog AGL117C OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=AGL117C PE=3 SV=1
Length = 271
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVPYLV 86
+ ++VLG AG+GK++F SY+ +++NLDPA Y VD RD+ L
Sbjct: 4 VGVLVLGPAGAGKSTFCNGIISYMQSVGRRAHIVNLDPAAEASEYEFTVD--IRDLISLD 61
Query: 87 NVGE 90
+V E
Sbjct: 62 DVME 65
>sp|Q6CQA6|GPN3_KLULA GPN-loop GTPase 3 homolog KLLA0D18557g OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=KLLA0D18557g PE=3 SV=2
Length = 271
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVPYLV 86
+ ++VLG AG+GK++F S++ +++NLDPA Y +D RD+ L
Sbjct: 4 VGVLVLGPAGAGKSTFCNAIISHMQSIGRRAHIVNLDPAAEATKYEFTID--IRDLISLE 61
Query: 87 NVGE 90
+V E
Sbjct: 62 DVME 65
>sp|Q6FSS0|GPN3_CANGA GPN-loop GTPase 3 homolog CAGL0G08294g OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=CAGL0G08294g PE=3 SV=1
Length = 271
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVPYLV 86
+ L+VLG AG+GK++F S++ +++NLDPA Y +D RD+ L
Sbjct: 4 VGLLVLGPAGAGKSTFCNSIISHMQTIGRRAHIVNLDPAAEPSKYEFTID--IRDLISLD 61
Query: 87 NVGE 90
+V E
Sbjct: 62 DVME 65
>sp|Q06543|GPN3_YEAST GPN-loop GTPase 3 homolog YLR243W OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YLR243W PE=1 SV=1
Length = 272
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVPYLV 86
+ ++VLG AG+GK++F S++ +++NLDPA Y +D RD+ L
Sbjct: 4 VGVMVLGPAGAGKSTFCNSIISHMQTVGRRAHIVNLDPAAEATKYEFTID--IRDLISLD 61
Query: 87 NVGE 90
+V E
Sbjct: 62 DVME 65
>sp|Q0U2G5|CLP1_PHANO Protein CLP1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574
/ FGSC 10173) GN=CLP1 PE=3 SV=1
Length = 468
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 2 AEEKVSDNSGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61
A E + D S + S + GP ++V+G SGKTS VK +SY P V+N
Sbjct: 111 ALELLRDQSVSSGSAEMGPR-------VLVVGPEHSGKTSLVKVMTSYAAKTSRQPMVVN 163
Query: 62 LDP 64
LDP
Sbjct: 164 LDP 166
>sp|Q54NK8|GPN3_DICDI GPN-loop GTPase 3 homolog OS=Dictyostelium discoideum GN=gpn3
PE=3 SV=1
Length = 285
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 30 IVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVPYLVNVG 89
+V+G AGSGK+++ Y + + + +++NLDPA Y P D+ LV V
Sbjct: 7 LVMGPAGSGKSTYCDTMRKYCEEIKRSVHIVNLDPAAEVFEY-----PVSVDIKNLVTVD 61
Query: 90 EL 91
E+
Sbjct: 62 EV 63
>sp|A5UMY7|SRP54_METS3 Signal recognition particle 54 kDa protein OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=srp54 PE=3
SV=2
Length = 445
Score = 37.0 bits (84), Expect = 0.047, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 19 GPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63
G + KP ++ LG+ GSGKT+ + K YL K NP V+ D
Sbjct: 92 GLDIDVKPYKILFLGLQGSGKTTTIGKLCRYLQKKGFNPAVVCTD 136
>sp|Q5A0W6|GPN3_CANAL GPN-loop GTPase 3 homolog CaO19.3130/CaO19.10642 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=CaO19.10642
PE=3 SV=2
Length = 273
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 29 LIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVPYLVNV 88
++VLG AG GK++F +Y+ +++NLDPA Y +D +D+ L +V
Sbjct: 6 VLVLGPAGVGKSTFCNSMIAYMQSIGRRAHIVNLDPAANPTEYEFTID--VKDLISLQDV 63
Query: 89 GELSMLLLNG 98
E L NG
Sbjct: 64 MEEMELGPNG 73
>sp|Q6CBB5|GPN3_YARLI GPN-loop GTPase 3 homolog YALI0C20317g OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=YALI0C20317g PE=3 SV=1
Length = 271
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVPYLV 86
+ ++VLG AG GK++F +++ +++NLDPA Y VD RD+ L
Sbjct: 4 VGILVLGPAGVGKSTFCNALITHIQSIGRRAHIVNLDPAAEPNEYEFTVD--IRDLISLN 61
Query: 87 NVGE 90
+V E
Sbjct: 62 DVME 65
>sp|A4QQE0|CLP1_MAGO7 Protein CLP1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=CLP1 PE=3 SV=2
Length = 455
Score = 36.2 bits (82), Expect = 0.075, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 2 AEEKVSDNSGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61
+ E + N+G S HGP ++V G G G+TS V+ +++ P V++
Sbjct: 110 SREAAARNNGGGRSAPHGPR-------VLVAGKTGCGRTSLVRTLAAWATRTGAQPMVVD 162
Query: 62 LDPA 65
DP
Sbjct: 163 ADPG 166
>sp|Q6PUR6|GPN2_DANRE GPN-loop GTPase 2 OS=Danio rerio GN=gpn2 PE=2 SV=1
Length = 311
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 30 IVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVPYLVNVG 89
+V+G GSGKT++ + +L ++NLDPA +PY P D+ LV +
Sbjct: 14 VVIGPPGSGKTTYCRGMQEFLSRLGRKVVIVNLDPANEGLPY-----PCAVDIAELVTLD 68
Query: 90 EL 91
++
Sbjct: 69 DV 70
>sp|Q4R579|GPN2_MACFA GPN-loop GTPase 2 OS=Macaca fascicularis GN=GPN2 PE=2 SV=1
Length = 310
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 31 VLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVPYLVNVGE 90
V+G GSGKT++ S +L V+NLDPA +PY V DV LV +G+
Sbjct: 14 VIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYECAV-----DVGELVGLGD 68
Query: 91 L 91
+
Sbjct: 69 V 69
>sp|Q9H9Y4|GPN2_HUMAN GPN-loop GTPase 2 OS=Homo sapiens GN=GPN2 PE=2 SV=2
Length = 310
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 31 VLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVPYLVNVGE 90
V+G GSGKT++ S +L V+NLDPA +PY V DV LV +G+
Sbjct: 14 VIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYECAV-----DVGELVGLGD 68
Query: 91 L 91
+
Sbjct: 69 V 69
>sp|A6H7F2|GPN2_BOVIN GPN-loop GTPase 2 OS=Bos taurus GN=GPN2 PE=2 SV=1
Length = 310
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 31 VLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVPYLVNVGE 90
V+G GSGKT++ S +L V+NLDPA +PY V DV LV +G+
Sbjct: 14 VIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYECAV-----DVGELVGLGD 68
Query: 91 L 91
+
Sbjct: 69 V 69
>sp|D4A7C0|GPN2_RAT GPN-loop GTPase 2 OS=Rattus norvegicus GN=Gpn2 PE=3 SV=1
Length = 310
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 31 VLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVPYLVNVGE 90
V+G GSGKT++ S +L V+NLDPA +PY V DV LV +G+
Sbjct: 14 VIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYECAV-----DVGELVGLGD 68
Query: 91 L 91
+
Sbjct: 69 V 69
>sp|A3LNJ3|CLP1_PICST Protein CLP1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=CLP1 PE=3 SV=3
Length = 453
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64
E +S P LIV G SGKTS K S+Y P ++NL+P
Sbjct: 132 ELQSGPRVLIV-GNGNSGKTSLAKLLSAYAIKSDSTPVLVNLNP 174
>sp|A5FVN9|Y446_ACICJ UPF0042 nucleotide-binding protein Acry_0446 OS=Acidiphilium
cryptum (strain JF-5) GN=Acry_0446 PE=3 SV=1
Length = 303
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 29 LIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR-DVPYLVNVDPACRD 81
+IV G++G+G+ S ++ Y+ DNP + ++ R D P V VD RD
Sbjct: 6 VIVTGLSGAGRNSVLRALEDIGYEAVDNPPLRIVETLVRGDKPLAVGVDARTRD 59
>sp|Q58DD9|GPN2_PIG GPN-loop GTPase 2 OS=Sus scrofa GN=GPN2 PE=2 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 31 VLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVD 76
V+G GSGKT++ S +L V+NLDPA +PY VD
Sbjct: 14 VIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYECAVD 59
>sp|Q8VEJ1|GPN2_MOUSE GPN-loop GTPase 2 OS=Mus musculus GN=Gpn2 PE=2 SV=2
Length = 310
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 31 VLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVPYLVNVGE 90
V+G GSGKT++ S +L V+NLDPA +PY V DV LV +G+
Sbjct: 14 VIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANDGLPYECAV-----DVGELVGLGD 68
Query: 91 L 91
+
Sbjct: 69 V 69
>sp|A1CB93|CLP1_ASPCL Protein clp1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65
/ DSM 816 / NCTC 3887 / NRRL 1) GN=clp1 PE=3 SV=1
Length = 560
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 14 SSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65
++G GP +++LG +GKTS K ++Y P V+NLDPA
Sbjct: 144 ATGKDGPR-------VLILGPENAGKTSLAKILTAYATKVGRQPIVVNLDPA 188
>sp|P31539|HS104_YEAST Heat shock protein 104 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HSP104 PE=1 SV=2
Length = 908
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQD 55
+P + LG++GSGKT KK + +L++ +D
Sbjct: 606 QPASFLFLGLSGSGKTELAKKVAGFLFNDED 636
>sp|Q4WT40|GPN3_ASPFU GPN-loop GTPase 3 homolog AFUA_1G10640 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC
A1100) GN=AFUA_1G10640 PE=3 SV=1
Length = 293
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 29 LIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVPYLVNV 88
++V+G AG+GK++F +L + + + +NLDPA Y ++D R++ L +V
Sbjct: 6 VLVMGPAGAGKSTFCSALIQHLQTTRRSCFYVNLDPAAESFNYEPDLD--IRELITLEDV 63
Query: 89 GELSMLLLNG 98
E L NG
Sbjct: 64 MEEMELGPNG 73
>sp|B0TTD2|CYSC_SHEHH Adenylyl-sulfate kinase OS=Shewanella halifaxensis (strain
HAW-EB4) GN=cysC PE=3 SV=1
Length = 205
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA----CRDVPYLVNVDPACR 80
KPI L G++GSGK++ L+D + Y+++ D C+D+ + ++ R
Sbjct: 23 KPILLWFTGLSGSGKSTLAGALERALFDAGFHTYLLDGDNVRHGLCKDLGFSLD----DR 78
Query: 81 DVPYLVNVGELSMLLLNGN 99
D L VGE++ L+++
Sbjct: 79 D-ENLRRVGEVAKLMVDAG 96
>sp|Q6BI59|GPN3_DEBHA GPN-loop GTPase 3 homolog DEHA2G13222g OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=DEHA2G13222g PE=3 SV=2
Length = 274
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVPYLV 86
+ ++ LG AG GK++F +++ +++NLDPA Y +D RD+ L
Sbjct: 4 VGVLALGPAGVGKSTFCNSIITHMQSIGRRAHIVNLDPAAEPSEYEFTID--IRDLISLQ 61
Query: 87 NVGE 90
+V E
Sbjct: 62 DVME 65
>sp|Q8U070|SRP54_PYRFU Signal recognition particle 54 kDa protein OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=srp54
PE=1 SV=1
Length = 443
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSYL 50
E K KP L+++G+ GSGKT+ V K + Y
Sbjct: 95 EIKEKPTILLMVGIQGSGKTTTVAKLARYF 124
>sp|B1Y9L4|SRP54_PYRNV Signal recognition particle 54 kDa protein OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=srp54 PE=3 SV=1
Length = 433
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 16 GDHGPEFK--SKPICLIVLGMAGSGKTSFVKKFSSYLYDK 53
G+ PEFK KP +++LG+ GSGKT+ K + L +
Sbjct: 87 GEQPPEFKPTKKPYVVLLLGVEGSGKTTTAAKLAKLLVKR 126
>sp|Q5JJC8|SRP54_PYRKO Signal recognition particle 54 kDa protein OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=srp54 PE=3 SV=1
Length = 448
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSYL 50
E K KP ++ +G+ GSGKT+ V K + YL
Sbjct: 95 EIKHKPTVILTVGIQGSGKTTSVAKLARYL 124
>sp|Q10299|CLP1_SCHPO Protein clp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC22H10.05c PE=3 SV=1
Length = 456
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 7 SDNSGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65
++N+ +GP C+ ++G GKTS +K SY + +P +NLDP
Sbjct: 94 AENAAANDESSYGP-------CVCLIGPRSCGKTSVLKILESYALKQSRHPICVNLDPT 145
>sp|Q4WVA5|CLP1_ASPFU Protein clp1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293
/ CBS 101355 / FGSC A1100) GN=clp1 PE=3 SV=1
Length = 552
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 14 SSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65
++G GP +++LG +GKTS K ++Y P V+NLDPA
Sbjct: 144 ATGKDGPR-------VLILGPENAGKTSVAKILTAYATKVGRQPIVVNLDPA 188
>sp|A1RS43|SRP54_PYRIL Signal recognition particle 54 kDa protein OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=srp54 PE=3
SV=1
Length = 433
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 16 GDHGPEFK--SKPICLIVLGMAGSGKTSFVKKFSSYLYDK 53
G+ EFK KP +++LG+ GSGKT+ K + YL +
Sbjct: 87 GEQPAEFKPVKKPYLVLLLGVEGSGKTTTAAKLARYLVKR 126
>sp|O14443|GPN3_SCHPO GPN-loop GTPase 3 homolog fet5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=fet5 PE=2 SV=1
Length = 276
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR--------DVPYLVNVDPA 78
+ V G+A SGK++F SY+ + +++NLDPA D+ L+++D
Sbjct: 4 VAAFVCGVASSGKSTFCGALMSYMKSVGRSCHLVNLDPAAENFEWEPTVDIRDLISIDDV 63
Query: 79 CRDVPYLVNVGEL---SMLLLNGNKLEHQILNFQK 110
++ Y N G + L+ N + L +I ++ +
Sbjct: 64 MEELDYGPNGGLIYCFEFLMENLDWLNEEIGDYDE 98
>sp|Q8ZT95|SRP54_PYRAE Signal recognition particle 54 kDa protein OS=Pyrobaculum
aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM
9630 / NBRC 100827) GN=srp54 PE=3 SV=1
Length = 433
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 16 GDHGPEFK--SKPICLIVLGMAGSGKTSFVKKFSSYLYDK 53
G+ EFK KP +++LG+ GSGKT+ K + YL +
Sbjct: 87 GEQPAEFKPTKKPYIVLLLGVEGSGKTTTAAKLAKYLAKR 126
>sp|Q5BJ53|GPN2_XENTR GPN-loop GTPase 2 OS=Xenopus tropicalis GN=gpn2 PE=2 SV=1
Length = 303
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 31 VLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVP 70
V+G GSGK+++V+ + L +INLDPA D P
Sbjct: 24 VIGPPGSGKSTYVRAMQALLAQMGRKSAIINLDPAGEDEP 63
>sp|A3MWX6|SRP54_PYRCJ Signal recognition particle 54 kDa protein OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=srp54 PE=3 SV=1
Length = 431
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 16 GDHGPEFK--SKPICLIVLGMAGSGKTSFVKKFSSYLYDK 53
G+ EFK KP +++LG+ GSGKT+ K + YL +
Sbjct: 86 GEQPAEFKPTKKPYVVLLLGVEGSGKTTTAAKLAKYLAKR 125
>sp|A1DE49|CLP1_NEOFI Protein clp1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=clp1 PE=3 SV=1
Length = 559
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 14 SSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65
++G GP +++LG +GKTS K ++Y P V+NLDPA
Sbjct: 144 ATGKDGPR-------VLILGPENAGKTSVAKILTAYATKVGRQPIVVNLDPA 188
>sp|B0Y0Y6|CLP1_ASPFC Protein clp1 OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 /
FGSC A1163) GN=clp1 PE=3 SV=1
Length = 552
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 14 SSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65
++G GP +++LG +GKTS K ++Y P V+NLDPA
Sbjct: 144 ATGKDGPR-------VLILGPENAGKTSVAKILTAYATKVGRQPIVVNLDPA 188
>sp|O59307|SRP54_PYRHO Signal recognition particle 54 kDa protein OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=srp54 PE=3 SV=3
Length = 443
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSYL 50
E K KP L+ +G+ GSGKT+ V K + Y
Sbjct: 95 EIKEKPTVLLTVGVQGSGKTTTVAKLARYF 124
>sp|B6YSS1|SRP54_THEON Signal recognition particle 54 kDa protein OS=Thermococcus
onnurineus (strain NA1) GN=srp54 PE=3 SV=1
Length = 448
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68
E K KP L+ +G+ GSGKT+ + K + Y Q Y + L C D
Sbjct: 95 EIKEKPTVLLTVGIQGSGKTTSIAKLARYF---QKRGYKVGL--VCSD 137
>sp|Q66KF6|GPN2_XENLA GPN-loop GTPase 2 OS=Xenopus laevis GN=gpn2 PE=2 SV=1
Length = 318
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 31 VLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVP 70
V+G GSGK+++V+ + L +INLDPA D P
Sbjct: 24 VIGPPGSGKSTYVRAMQALLARMGRKSAIINLDPAGEDEP 63
>sp|Q7VR23|KTHY_BLOFL Thymidylate kinase OS=Blochmannia floridanus GN=tmk PE=3 SV=1
Length = 211
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 29 LIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVN 74
++V G+ GSGKT+ V K Y Y+++ + +P ++ Y+++
Sbjct: 6 IVVEGLDGSGKTTIVHKIVKYFYNQKITNVITTHEPGGTEIAYILS 51
>sp|Q12ZG8|SRP54_METBU Signal recognition particle 54 kDa protein OS=Methanococcoides
burtonii (strain DSM 6242) GN=srp54 PE=3 SV=1
Length = 439
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63
KP ++++G+ GSGKT+ K S Y K P VI D
Sbjct: 96 KPQTIMMIGLQGSGKTTTTSKLSRYFQRKGLKPAVICAD 134
>sp|A4WLQ3|SRP54_PYRAR Signal recognition particle 54 kDa protein OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=srp54 PE=3
SV=1
Length = 433
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 16 GDHGPEFK--SKPICLIVLGMAGSGKTSFVKKFSSYLYDK 53
G+ EFK KP +++LG+ GSGKT+ K + YL +
Sbjct: 87 GEQPAEFKPTKKPYIVLLLGVEGSGKTTTSAKLARYLMKR 126
>sp|Q54I24|ARFD_DICDI ADP-ribosylation factor D OS=Dictyostelium discoideum GN=arrD
PE=3 SV=2
Length = 216
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 11 GPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKF 46
G +SS FKSK I L++LG+ GSGKT+ + K
Sbjct: 2 GISSSNPFSSIFKSKAIKLLMLGLDGSGKTTILYKL 37
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,351,615
Number of Sequences: 539616
Number of extensions: 2173996
Number of successful extensions: 8170
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 8054
Number of HSP's gapped (non-prelim): 162
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)