Query psy11490
Match_columns 147
No_of_seqs 188 out of 1874
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 19:46:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0572 Udk Uridine kinase [Nu 99.8 6.1E-20 1.3E-24 146.5 8.2 99 24-124 6-115 (218)
2 PTZ00301 uridine kinase; Provi 99.7 5.6E-18 1.2E-22 134.4 8.0 100 25-124 2-114 (210)
3 PF00485 PRK: Phosphoribulokin 99.6 3.4E-16 7.4E-21 121.2 5.4 97 28-124 1-114 (194)
4 cd02028 UMPK_like Uridine mono 99.6 1.8E-15 3.9E-20 116.7 8.3 96 28-124 1-106 (179)
5 cd02029 PRK_like Phosphoribulo 99.6 1.5E-15 3.2E-20 125.0 7.8 99 28-126 1-127 (277)
6 KOG1532|consensus 99.6 3.8E-16 8.2E-21 129.0 1.9 123 21-143 14-165 (366)
7 PLN02348 phosphoribulokinase 99.6 8.9E-15 1.9E-19 125.5 9.5 101 24-124 47-170 (395)
8 PRK05439 pantothenate kinase; 99.6 8.2E-15 1.8E-19 122.6 8.5 105 22-126 82-200 (311)
9 TIGR00554 panK_bact pantothena 99.5 1.4E-14 3E-19 120.1 7.5 105 22-126 58-176 (290)
10 cd02025 PanK Pantothenate kina 99.5 2.5E-14 5.4E-19 113.8 5.5 97 28-124 1-111 (220)
11 PRK05480 uridine/cytidine kina 99.5 1.2E-13 2.7E-18 107.6 9.1 85 24-111 4-94 (209)
12 TIGR00235 udk uridine kinase. 99.5 1.8E-13 4E-18 106.9 8.3 89 21-111 1-94 (207)
13 PRK15453 phosphoribulokinase; 99.5 1.7E-13 3.7E-18 113.4 8.3 84 24-107 3-98 (290)
14 PF03029 ATP_bind_1: Conserved 99.4 2.5E-14 5.3E-19 115.3 1.7 60 31-90 1-64 (238)
15 cd02024 NRK1 Nicotinamide ribo 99.4 6E-13 1.3E-17 104.1 7.8 79 28-110 1-84 (187)
16 cd02023 UMPK Uridine monophosp 99.4 9E-13 2E-17 101.8 8.1 83 28-112 1-88 (198)
17 PLN02796 D-glycerate 3-kinase 99.4 5.5E-13 1.2E-17 113.0 7.1 102 23-127 97-229 (347)
18 PLN02318 phosphoribulokinase/u 99.4 7E-13 1.5E-17 119.0 7.5 93 24-124 63-165 (656)
19 PLN03046 D-glycerate 3-kinase; 99.4 6.4E-13 1.4E-17 115.3 6.7 105 23-127 209-341 (460)
20 PRK09270 nucleoside triphospha 99.3 7.6E-12 1.6E-16 99.4 8.8 90 23-112 30-125 (229)
21 PRK07667 uridine kinase; Provi 99.3 8.1E-12 1.8E-16 97.1 8.4 88 24-111 15-108 (193)
22 COG2019 AdkA Archaeal adenylat 99.3 5E-13 1.1E-17 103.4 1.3 97 26-144 4-101 (189)
23 PRK06696 uridine kinase; Valid 99.3 8.9E-12 1.9E-16 98.6 7.3 86 23-111 19-115 (223)
24 KOG1534|consensus 99.2 2E-12 4.3E-17 103.7 1.6 64 26-89 3-70 (273)
25 KOG1533|consensus 99.2 7.9E-12 1.7E-16 101.5 2.6 64 26-89 2-69 (290)
26 PRK07429 phosphoribulokinase; 99.2 5.6E-11 1.2E-15 100.1 7.7 99 23-124 5-112 (327)
27 cd02026 PRK Phosphoribulokinas 99.2 3.7E-11 8E-16 98.7 5.6 94 28-124 1-103 (273)
28 COG1072 CoaA Panthothenate kin 99.1 1.3E-10 2.8E-15 95.8 7.7 116 21-137 77-202 (283)
29 PRK04040 adenylate kinase; Pro 99.1 4.4E-11 9.5E-16 93.2 3.2 99 26-144 2-102 (188)
30 KOG4203|consensus 98.9 8.2E-10 1.8E-14 97.1 4.5 114 11-124 29-161 (473)
31 PRK06547 hypothetical protein; 98.7 2.5E-08 5.4E-13 76.8 6.3 41 23-68 12-52 (172)
32 PRK13768 GTPase; Provisional 98.7 3.5E-08 7.6E-13 80.0 6.1 55 26-80 2-56 (253)
33 KOG3308|consensus 98.6 5E-08 1.1E-12 77.7 5.8 62 25-91 3-67 (225)
34 COG4240 Predicted kinase [Gene 98.6 9.7E-08 2.1E-12 77.8 6.9 104 22-127 46-173 (300)
35 COG1703 ArgK Putative periplas 98.6 3.4E-08 7.4E-13 82.5 3.9 47 21-67 46-92 (323)
36 PF00448 SRP54: SRP54-type pro 98.5 9.5E-08 2.1E-12 75.0 4.8 41 26-66 1-41 (196)
37 PRK10751 molybdopterin-guanine 98.5 2.4E-07 5.1E-12 71.9 6.0 44 21-64 1-44 (173)
38 PF13207 AAA_17: AAA domain; P 98.5 1.4E-07 3.1E-12 66.7 3.6 33 28-65 1-33 (121)
39 PRK09435 membrane ATPase/prote 98.5 2.1E-07 4.5E-12 78.8 5.2 46 22-67 52-97 (332)
40 PRK08233 hypothetical protein; 98.4 2.9E-07 6.3E-12 69.2 4.2 39 25-67 2-40 (182)
41 PF03308 ArgK: ArgK protein; 98.4 3.4E-07 7.5E-12 75.2 4.1 44 24-67 27-70 (266)
42 PRK10416 signal recognition pa 98.4 6.2E-07 1.3E-11 75.3 5.6 43 24-66 112-154 (318)
43 TIGR03499 FlhF flagellar biosy 98.3 7.4E-07 1.6E-11 73.4 5.5 44 23-66 191-236 (282)
44 PF01583 APS_kinase: Adenylyls 98.3 4.3E-07 9.3E-12 69.4 3.8 45 25-69 1-45 (156)
45 PRK00889 adenylylsulfate kinas 98.3 8.6E-07 1.9E-11 67.1 5.3 43 24-66 2-44 (175)
46 PRK06762 hypothetical protein; 98.3 6.7E-07 1.4E-11 67.0 4.5 41 25-68 1-41 (166)
47 TIGR00064 ftsY signal recognit 98.3 1E-06 2.2E-11 72.4 5.6 44 23-66 69-112 (272)
48 TIGR00750 lao LAO/AO transport 98.3 1E-06 2.3E-11 72.9 5.7 46 22-67 30-75 (300)
49 COG1126 GlnQ ABC-type polar am 98.3 6E-07 1.3E-11 72.4 3.8 42 24-65 26-67 (240)
50 TIGR01425 SRP54_euk signal rec 98.3 1.2E-06 2.6E-11 76.4 5.8 44 23-66 97-140 (429)
51 COG0529 CysC Adenylylsulfate k 98.3 8.7E-07 1.9E-11 69.5 4.4 48 21-68 18-65 (197)
52 PRK05541 adenylylsulfate kinas 98.3 6.7E-07 1.5E-11 67.8 3.7 45 24-68 5-49 (176)
53 PF03205 MobB: Molybdopterin g 98.3 1.4E-06 3.1E-11 64.9 5.4 38 27-64 1-39 (140)
54 PRK13477 bifunctional pantoate 98.3 2.1E-07 4.6E-12 82.7 0.9 43 24-71 282-324 (512)
55 PRK03846 adenylylsulfate kinas 98.2 8.5E-07 1.9E-11 68.8 3.5 54 13-66 11-64 (198)
56 cd03115 SRP The signal recogni 98.2 2.2E-06 4.7E-11 64.7 5.1 39 28-66 2-40 (173)
57 PRK14974 cell division protein 98.2 2.3E-06 5E-11 72.5 5.5 44 23-66 137-180 (336)
58 COG1136 SalX ABC-type antimicr 98.2 1.4E-06 3E-11 70.3 3.5 42 24-65 29-70 (226)
59 smart00382 AAA ATPases associa 98.2 2.5E-06 5.3E-11 59.0 4.3 41 26-66 2-42 (148)
60 cd02019 NK Nucleoside/nucleoti 98.2 2.7E-06 5.9E-11 55.8 4.2 31 28-60 1-31 (69)
61 COG1120 FepC ABC-type cobalami 98.2 1.9E-06 4.2E-11 70.7 4.0 41 24-64 26-66 (258)
62 PF13671 AAA_33: AAA domain; P 98.2 1.5E-06 3.2E-11 62.9 3.0 35 28-67 1-35 (143)
63 PRK10867 signal recognition pa 98.1 3.4E-06 7.3E-11 73.7 5.5 45 23-67 97-142 (433)
64 COG1763 MobB Molybdopterin-gua 98.1 3.6E-06 7.8E-11 64.6 5.0 41 26-66 2-42 (161)
65 PRK11889 flhF flagellar biosyn 98.1 3.3E-06 7.1E-11 73.5 5.3 44 23-66 238-281 (436)
66 TIGR00176 mobB molybdopterin-g 98.1 2.7E-06 5.8E-11 64.4 4.1 37 28-64 1-37 (155)
67 PF06414 Zeta_toxin: Zeta toxi 98.1 3.4E-06 7.3E-11 65.5 4.3 49 20-70 9-57 (199)
68 PRK12726 flagellar biosynthesi 98.1 4.8E-06 1E-10 72.1 5.4 44 24-67 204-247 (407)
69 COG1116 TauB ABC-type nitrate/ 98.1 2.9E-06 6.3E-11 69.2 3.7 38 24-61 27-64 (248)
70 cd03114 ArgK-like The function 98.1 3.4E-06 7.4E-11 63.3 3.9 39 28-66 1-39 (148)
71 TIGR00455 apsK adenylylsulfate 98.1 5.8E-06 1.3E-10 63.1 5.1 45 22-66 14-58 (184)
72 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.1 3.1E-06 6.8E-11 66.0 3.6 37 24-60 28-64 (218)
73 cd03116 MobB Molybdenum is an 98.1 5.8E-06 1.3E-10 63.0 5.0 40 27-66 2-41 (159)
74 PRK06217 hypothetical protein; 98.1 4.5E-06 9.8E-11 63.9 4.2 36 27-67 2-37 (183)
75 TIGR01166 cbiO cobalt transpor 98.1 3.6E-06 7.7E-11 64.5 3.6 36 25-60 17-52 (190)
76 COG1121 ZnuC ABC-type Mn/Zn tr 98.1 4.7E-06 1E-10 68.3 4.4 40 24-63 28-67 (254)
77 cd03225 ABC_cobalt_CbiO_domain 98.1 4.4E-06 9.4E-11 64.8 3.9 36 24-59 25-60 (211)
78 PRK08118 topology modulation p 98.0 4.3E-06 9.3E-11 63.8 3.8 35 27-66 2-36 (167)
79 cd03224 ABC_TM1139_LivF_branch 98.0 4.3E-06 9.4E-11 65.2 3.8 37 24-60 24-60 (222)
80 cd03292 ABC_FtsE_transporter F 98.0 3.6E-06 7.8E-11 65.3 3.3 37 24-60 25-61 (214)
81 TIGR00960 3a0501s02 Type II (G 98.0 3.9E-06 8.6E-11 65.4 3.5 36 24-59 27-62 (216)
82 cd03262 ABC_HisP_GlnQ_permease 98.0 4.5E-06 9.7E-11 64.8 3.7 37 24-60 24-60 (213)
83 PRK00771 signal recognition pa 98.0 7.6E-06 1.6E-10 71.6 5.5 43 24-66 93-135 (437)
84 cd01672 TMPK Thymidine monopho 98.0 5.8E-06 1.3E-10 62.4 4.2 35 27-61 1-35 (200)
85 TIGR02673 FtsE cell division A 98.0 4.4E-06 9.5E-11 64.9 3.6 37 24-60 26-62 (214)
86 TIGR00959 ffh signal recogniti 98.0 7.8E-06 1.7E-10 71.3 5.5 44 24-67 97-141 (428)
87 PRK07261 topology modulation p 98.0 4.8E-06 1E-10 63.6 3.7 34 28-66 2-35 (171)
88 cd03259 ABC_Carb_Solutes_like 98.0 4.5E-06 9.8E-11 64.9 3.6 36 24-59 24-59 (213)
89 cd03222 ABC_RNaseL_inhibitor T 98.0 4.6E-06 9.9E-11 64.5 3.6 37 24-60 23-59 (177)
90 cd01120 RecA-like_NTPases RecA 98.0 6.1E-06 1.3E-10 59.7 3.9 39 28-66 1-39 (165)
91 cd03263 ABC_subfamily_A The AB 98.0 5E-06 1.1E-10 64.9 3.7 36 24-59 26-61 (220)
92 PRK14493 putative bifunctional 98.0 6.6E-06 1.4E-10 67.9 4.6 39 27-66 2-40 (274)
93 cd03258 ABC_MetN_methionine_tr 98.0 5.2E-06 1.1E-10 65.4 3.8 37 24-60 29-65 (233)
94 cd00227 CPT Chloramphenicol (C 98.0 4.6E-06 1E-10 63.4 3.4 41 26-69 2-42 (175)
95 cd02027 APSK Adenosine 5'-phos 98.0 5.5E-06 1.2E-10 61.9 3.8 40 28-67 1-40 (149)
96 cd03226 ABC_cobalt_CbiO_domain 98.0 4.8E-06 1E-10 64.5 3.5 36 24-59 24-59 (205)
97 TIGR02211 LolD_lipo_ex lipopro 98.0 5.2E-06 1.1E-10 64.8 3.7 36 24-59 29-64 (221)
98 cd03235 ABC_Metallic_Cations A 98.0 4.9E-06 1.1E-10 64.7 3.5 36 24-59 23-58 (213)
99 TIGR03574 selen_PSTK L-seryl-t 98.0 5.4E-06 1.2E-10 66.4 3.8 39 28-66 1-39 (249)
100 cd03219 ABC_Mj1267_LivG_branch 98.0 4.9E-06 1.1E-10 65.6 3.5 36 24-59 24-59 (236)
101 cd03301 ABC_MalK_N The N-termi 98.0 5.1E-06 1.1E-10 64.5 3.6 36 24-59 24-59 (213)
102 cd03261 ABC_Org_Solvent_Resist 98.0 4.8E-06 1E-10 65.8 3.5 35 25-59 25-59 (235)
103 cd03257 ABC_NikE_OppD_transpor 98.0 5.3E-06 1.1E-10 64.9 3.6 37 24-60 29-65 (228)
104 cd03293 ABC_NrtD_SsuB_transpor 98.0 4.8E-06 1E-10 65.2 3.4 36 24-59 28-63 (220)
105 COG1124 DppF ABC-type dipeptid 98.0 5.5E-06 1.2E-10 67.6 3.7 33 25-57 32-64 (252)
106 TIGR02315 ABC_phnC phosphonate 98.0 5.4E-06 1.2E-10 65.6 3.6 36 24-59 26-61 (243)
107 cd03269 ABC_putative_ATPase Th 98.0 5.7E-06 1.2E-10 64.2 3.7 36 24-59 24-59 (210)
108 cd03256 ABC_PhnC_transporter A 98.0 5.8E-06 1.3E-10 65.3 3.7 36 24-59 25-60 (241)
109 PRK14527 adenylate kinase; Pro 98.0 9.3E-06 2E-10 62.5 4.8 31 21-51 1-31 (191)
110 cd03218 ABC_YhbG The ABC trans 98.0 6E-06 1.3E-10 65.0 3.7 36 24-59 24-59 (232)
111 cd03265 ABC_DrrA DrrA is the A 98.0 5.7E-06 1.2E-10 64.8 3.6 36 24-59 24-59 (220)
112 COG1131 CcmA ABC-type multidru 98.0 6E-06 1.3E-10 68.4 3.7 43 24-66 29-71 (293)
113 PRK14490 putative bifunctional 98.0 1.2E-05 2.6E-10 68.5 5.6 40 25-65 4-43 (369)
114 TIGR03608 L_ocin_972_ABC putat 98.0 5.5E-06 1.2E-10 63.9 3.3 37 25-61 23-59 (206)
115 cd03229 ABC_Class3 This class 98.0 6.3E-06 1.4E-10 62.8 3.6 37 24-60 24-60 (178)
116 PRK11629 lolD lipoprotein tran 98.0 5.6E-06 1.2E-10 65.4 3.4 36 24-59 33-68 (233)
117 PRK12723 flagellar biosynthesi 98.0 1.3E-05 2.8E-10 69.2 5.8 43 24-66 172-218 (388)
118 TIGR00101 ureG urease accessor 98.0 1.2E-05 2.7E-10 63.0 5.3 40 26-66 1-40 (199)
119 cd03260 ABC_PstB_phosphate_tra 98.0 7.5E-06 1.6E-10 64.3 4.0 36 24-59 24-64 (227)
120 TIGR00041 DTMP_kinase thymidyl 98.0 1.2E-05 2.5E-10 61.5 4.9 36 26-61 3-38 (195)
121 PRK14489 putative bifunctional 98.0 1.3E-05 2.8E-10 68.2 5.7 43 24-66 203-245 (366)
122 cd03296 ABC_CysA_sulfate_impor 98.0 6.3E-06 1.4E-10 65.4 3.5 36 24-59 26-61 (239)
123 TIGR03864 PQQ_ABC_ATP ABC tran 98.0 6.4E-06 1.4E-10 65.2 3.5 36 24-59 25-60 (236)
124 cd03214 ABC_Iron-Siderophores_ 98.0 7.5E-06 1.6E-10 62.5 3.8 37 24-60 23-59 (180)
125 TIGR03410 urea_trans_UrtE urea 98.0 6.8E-06 1.5E-10 64.6 3.6 37 24-60 24-60 (230)
126 PRK13540 cytochrome c biogenes 98.0 7.4E-06 1.6E-10 63.4 3.7 37 24-60 25-61 (200)
127 cd03264 ABC_drug_resistance_li 98.0 7.1E-06 1.5E-10 63.7 3.6 34 28-61 27-60 (211)
128 COG3839 MalK ABC-type sugar tr 98.0 6.6E-06 1.4E-10 69.9 3.6 37 25-61 28-64 (338)
129 PRK12724 flagellar biosynthesi 98.0 1E-05 2.2E-10 70.7 4.8 42 25-66 222-264 (432)
130 PF00005 ABC_tran: ABC transpo 98.0 2.9E-06 6.2E-11 61.2 1.2 39 25-63 10-48 (137)
131 cd03297 ABC_ModC_molybdenum_tr 98.0 7.9E-06 1.7E-10 63.7 3.7 34 27-60 24-57 (214)
132 TIGR01184 ntrCD nitrate transp 98.0 7.6E-06 1.7E-10 64.8 3.7 35 25-59 10-44 (230)
133 PRK10584 putative ABC transpor 98.0 7.7E-06 1.7E-10 64.3 3.7 36 24-59 34-69 (228)
134 cd03246 ABCC_Protease_Secretio 97.9 9.7E-06 2.1E-10 61.5 4.1 35 25-59 27-61 (173)
135 KOG2702|consensus 97.9 2.2E-05 4.7E-10 64.4 6.3 108 24-134 117-247 (323)
136 TIGR02324 CP_lyasePhnL phospho 97.9 8.3E-06 1.8E-10 63.9 3.8 36 24-59 32-67 (224)
137 PRK10247 putative ABC transpor 97.9 8.7E-06 1.9E-10 64.2 3.9 36 24-59 31-66 (225)
138 cd03295 ABC_OpuCA_Osmoprotecti 97.9 8.4E-06 1.8E-10 64.8 3.8 36 24-59 25-60 (242)
139 cd03266 ABC_NatA_sodium_export 97.9 8.5E-06 1.8E-10 63.5 3.7 35 25-59 30-64 (218)
140 cd03298 ABC_ThiQ_thiamine_tran 97.9 8.1E-06 1.8E-10 63.4 3.6 36 24-59 22-57 (211)
141 PRK11248 tauB taurine transpor 97.9 8E-06 1.7E-10 65.9 3.7 36 24-59 25-60 (255)
142 cd03230 ABC_DR_subfamily_A Thi 97.9 8.5E-06 1.8E-10 61.8 3.6 36 24-59 24-59 (173)
143 PRK14250 phosphate ABC transpo 97.9 7E-06 1.5E-10 65.4 3.3 35 25-59 28-62 (241)
144 PRK13538 cytochrome c biogenes 97.9 8.7E-06 1.9E-10 63.2 3.7 35 25-59 26-60 (204)
145 cd03251 ABCC_MsbA MsbA is an e 97.9 9.2E-06 2E-10 64.0 3.7 36 24-59 26-61 (234)
146 COG1127 Ttg2A ABC-type transpo 97.9 9.9E-06 2.1E-10 66.2 4.0 40 25-64 33-72 (263)
147 PLN02200 adenylate kinase fami 97.9 1.2E-05 2.6E-10 64.7 4.4 30 22-51 39-68 (234)
148 PRK10908 cell division protein 97.9 8.1E-06 1.8E-10 64.0 3.4 36 24-59 26-61 (222)
149 cd03252 ABCC_Hemolysin The ABC 97.9 8.8E-06 1.9E-10 64.3 3.6 36 24-59 26-61 (237)
150 PRK10895 lipopolysaccharide AB 97.9 9E-06 2E-10 64.5 3.7 37 24-60 27-63 (241)
151 cd03245 ABCC_bacteriocin_expor 97.9 1E-05 2.2E-10 63.2 3.9 36 24-59 28-63 (220)
152 cd03254 ABCC_Glucan_exporter_l 97.9 9.6E-06 2.1E-10 63.7 3.7 35 25-59 28-62 (229)
153 cd03223 ABCD_peroxisomal_ALDP 97.9 1E-05 2.2E-10 61.2 3.8 35 24-58 25-59 (166)
154 PRK13541 cytochrome c biogenes 97.9 1E-05 2.3E-10 62.3 3.8 36 25-60 25-60 (195)
155 PRK11701 phnK phosphonate C-P 97.9 9.5E-06 2E-10 65.2 3.7 38 24-61 30-67 (258)
156 TIGR01313 therm_gnt_kin carboh 97.9 1.1E-05 2.3E-10 60.2 3.8 33 29-66 1-33 (163)
157 cd03268 ABC_BcrA_bacitracin_re 97.9 1E-05 2.2E-10 62.7 3.7 36 24-59 24-59 (208)
158 PRK00698 tmk thymidylate kinas 97.9 1.8E-05 3.9E-10 60.6 5.0 35 25-59 2-36 (205)
159 PF13238 AAA_18: AAA domain; P 97.9 9.8E-06 2.1E-10 57.0 3.3 22 29-50 1-22 (129)
160 cd03247 ABCC_cytochrome_bd The 97.9 1.1E-05 2.4E-10 61.4 3.8 35 25-59 27-61 (178)
161 PRK05703 flhF flagellar biosyn 97.9 1.4E-05 3.1E-10 69.5 5.0 41 26-66 221-263 (424)
162 TIGR01277 thiQ thiamine ABC tr 97.9 9.6E-06 2.1E-10 63.3 3.5 36 25-60 23-58 (213)
163 cd03216 ABC_Carb_Monos_I This 97.9 9.7E-06 2.1E-10 61.2 3.4 37 24-60 24-60 (163)
164 PRK13539 cytochrome c biogenes 97.9 1.1E-05 2.3E-10 62.9 3.7 36 24-59 26-61 (207)
165 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.9 1E-05 2.2E-10 63.9 3.7 36 24-59 27-62 (238)
166 PRK11264 putative amino-acid A 97.9 1E-05 2.2E-10 64.5 3.6 36 24-59 27-62 (250)
167 PRK10771 thiQ thiamine transpo 97.9 1E-05 2.3E-10 63.9 3.6 36 24-59 23-58 (232)
168 TIGR01360 aden_kin_iso1 adenyl 97.9 1.2E-05 2.7E-10 60.6 3.9 25 26-50 3-27 (188)
169 TIGR01189 ccmA heme ABC export 97.9 1.1E-05 2.4E-10 62.2 3.7 36 24-59 24-59 (198)
170 PRK11300 livG leucine/isoleuci 97.9 1.1E-05 2.4E-10 64.4 3.8 37 24-60 29-65 (255)
171 cd03215 ABC_Carb_Monos_II This 97.9 1.1E-05 2.4E-10 61.6 3.6 37 25-61 25-61 (182)
172 PRK11124 artP arginine transpo 97.9 1E-05 2.2E-10 64.2 3.5 36 24-59 26-61 (242)
173 cd03228 ABCC_MRP_Like The MRP 97.9 1.3E-05 2.7E-10 60.7 3.8 37 24-60 26-62 (171)
174 TIGR01188 drrA daunorubicin re 97.9 8.7E-06 1.9E-10 67.2 3.2 38 24-61 17-54 (302)
175 TIGR02322 phosphon_PhnN phosph 97.9 1.3E-05 2.9E-10 60.6 3.9 27 27-53 2-28 (179)
176 PRK10575 iron-hydroxamate tran 97.9 9E-06 2E-10 65.7 3.1 36 24-59 35-70 (265)
177 PRK09493 glnQ glutamine ABC tr 97.9 1.1E-05 2.3E-10 64.0 3.5 37 24-60 25-61 (240)
178 PRK00300 gmk guanylate kinase; 97.9 1.3E-05 2.7E-10 61.9 3.8 27 25-51 4-30 (205)
179 cd03234 ABCG_White The White s 97.9 1.1E-05 2.3E-10 63.6 3.4 37 24-60 31-70 (226)
180 cd03253 ABCC_ATM1_transporter 97.9 1.2E-05 2.6E-10 63.4 3.8 36 24-59 25-60 (236)
181 cd03248 ABCC_TAP TAP, the Tran 97.9 1.2E-05 2.7E-10 63.0 3.8 37 24-60 38-74 (226)
182 cd03244 ABCC_MRP_domain2 Domai 97.9 1.3E-05 2.8E-10 62.6 3.8 36 24-59 28-63 (221)
183 TIGR01359 UMP_CMP_kin_fam UMP- 97.9 1.3E-05 2.8E-10 60.7 3.8 33 28-65 1-33 (183)
184 cd03237 ABC_RNaseL_inhibitor_d 97.9 1.2E-05 2.7E-10 64.8 3.8 34 25-58 24-57 (246)
185 TIGR03575 selen_PSTK_euk L-ser 97.9 1.4E-05 3E-10 68.0 4.2 40 29-68 2-42 (340)
186 PRK11614 livF leucine/isoleuci 97.9 1.1E-05 2.4E-10 63.8 3.5 37 24-60 29-65 (237)
187 PRK06995 flhF flagellar biosyn 97.9 2.3E-05 4.9E-10 69.5 5.7 42 25-66 255-298 (484)
188 TIGR02323 CP_lyasePhnK phospho 97.9 1.2E-05 2.5E-10 64.3 3.6 36 24-59 27-62 (253)
189 TIGR03771 anch_rpt_ABC anchore 97.9 1.3E-05 2.9E-10 63.2 3.8 35 25-59 5-39 (223)
190 PRK15177 Vi polysaccharide exp 97.9 1.5E-05 3.2E-10 62.7 4.1 34 25-58 12-45 (213)
191 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.9 1.1E-05 2.4E-10 59.8 3.2 36 24-59 24-59 (144)
192 PRK13638 cbiO cobalt transport 97.9 1.1E-05 2.3E-10 65.4 3.4 35 25-59 26-60 (271)
193 cd02021 GntK Gluconate kinase 97.9 1.6E-05 3.5E-10 58.4 4.1 35 28-67 1-35 (150)
194 TIGR03005 ectoine_ehuA ectoine 97.9 1.2E-05 2.5E-10 64.4 3.5 36 24-59 24-59 (252)
195 PRK11247 ssuB aliphatic sulfon 97.9 1.1E-05 2.5E-10 65.3 3.5 34 25-58 37-70 (257)
196 PHA02530 pseT polynucleotide k 97.9 1.8E-05 3.9E-10 64.5 4.7 39 26-68 2-40 (300)
197 TIGR03411 urea_trans_UrtD urea 97.9 1.4E-05 3E-10 63.4 3.8 38 24-61 26-63 (242)
198 PRK00131 aroK shikimate kinase 97.9 1.8E-05 3.8E-10 58.8 4.2 36 25-65 3-38 (175)
199 cd03250 ABCC_MRP_domain1 Domai 97.9 1.4E-05 3E-10 61.9 3.7 35 24-58 29-63 (204)
200 TIGR02769 nickel_nikE nickel i 97.9 1.3E-05 2.7E-10 64.9 3.6 36 24-59 35-70 (265)
201 cd00009 AAA The AAA+ (ATPases 97.9 2.4E-05 5.2E-10 54.7 4.6 41 26-66 19-59 (151)
202 cd03294 ABC_Pro_Gly_Bertaine T 97.9 1.2E-05 2.7E-10 65.2 3.5 35 25-59 49-83 (269)
203 PRK13543 cytochrome c biogenes 97.9 1.3E-05 2.9E-10 62.7 3.6 35 25-59 36-70 (214)
204 PRK13632 cbiO cobalt transport 97.9 1.4E-05 2.9E-10 64.9 3.7 36 24-59 33-68 (271)
205 PRK13648 cbiO cobalt transport 97.9 1.3E-05 2.8E-10 64.9 3.6 36 24-59 33-68 (269)
206 PRK13645 cbiO cobalt transport 97.9 1.3E-05 2.8E-10 65.6 3.6 36 24-59 35-70 (289)
207 cd01130 VirB11-like_ATPase Typ 97.9 1.6E-05 3.5E-10 61.2 3.9 34 25-58 24-57 (186)
208 PRK15056 manganese/iron transp 97.9 1.3E-05 2.7E-10 65.1 3.4 34 25-58 32-65 (272)
209 cd03231 ABC_CcmA_heme_exporter 97.9 1.4E-05 3.1E-10 61.9 3.6 37 24-60 24-60 (201)
210 PRK13649 cbiO cobalt transport 97.9 1.2E-05 2.7E-10 65.3 3.3 36 24-59 31-66 (280)
211 COG3842 PotA ABC-type spermidi 97.9 1.2E-05 2.5E-10 68.7 3.3 39 25-63 30-68 (352)
212 TIGR00972 3a0107s01c2 phosphat 97.8 1.2E-05 2.6E-10 64.1 3.2 37 24-60 25-66 (247)
213 PRK11831 putative ABC transpor 97.8 1.4E-05 3E-10 64.8 3.6 35 25-59 32-66 (269)
214 PRK13548 hmuV hemin importer A 97.8 1.4E-05 3E-10 64.4 3.5 36 24-59 26-61 (258)
215 COG3840 ThiQ ABC-type thiamine 97.8 1.7E-05 3.6E-10 63.1 3.8 40 25-64 24-63 (231)
216 TIGR02770 nickel_nikD nickel i 97.8 1.4E-05 2.9E-10 63.2 3.4 28 25-52 11-38 (230)
217 PRK03839 putative kinase; Prov 97.8 1.6E-05 3.5E-10 60.4 3.6 34 28-66 2-35 (180)
218 PRK15112 antimicrobial peptide 97.8 1.5E-05 3.3E-10 64.5 3.7 36 24-59 37-72 (267)
219 PRK14495 putative molybdopteri 97.8 2.6E-05 5.7E-10 68.4 5.3 40 27-66 2-41 (452)
220 TIGR01288 nodI ATP-binding ABC 97.8 1.3E-05 2.7E-10 66.3 3.2 37 24-60 28-64 (303)
221 TIGR03740 galliderm_ABC gallid 97.8 1.6E-05 3.4E-10 62.4 3.6 36 24-59 24-59 (223)
222 cd03290 ABCC_SUR1_N The SUR do 97.8 1.7E-05 3.7E-10 62.0 3.8 36 24-59 25-60 (218)
223 TIGR03263 guanyl_kin guanylate 97.8 2.2E-05 4.8E-10 59.2 4.3 26 27-52 2-27 (180)
224 PRK00091 miaA tRNA delta(2)-is 97.8 2.3E-05 4.9E-10 65.7 4.7 41 25-70 3-45 (307)
225 cd02034 CooC The accessory pro 97.8 2.8E-05 6.2E-10 56.2 4.6 36 29-64 2-37 (116)
226 PRK13646 cbiO cobalt transport 97.8 1.5E-05 3.3E-10 65.3 3.6 37 24-60 31-67 (286)
227 cd01131 PilT Pilus retraction 97.8 2.7E-05 5.9E-10 60.7 4.9 26 28-53 3-28 (198)
228 TIGR02868 CydC thiol reductant 97.8 1.3E-05 2.8E-10 70.5 3.3 35 25-59 360-394 (529)
229 COG2884 FtsE Predicted ATPase 97.8 2.3E-05 4.9E-10 62.4 4.4 40 25-64 27-66 (223)
230 PRK09544 znuC high-affinity zi 97.8 1.5E-05 3.2E-10 64.3 3.4 32 24-55 28-59 (251)
231 COG1125 OpuBA ABC-type proline 97.8 1.9E-05 4.1E-10 65.4 4.0 43 24-66 25-67 (309)
232 cd00820 PEPCK_HprK Phosphoenol 97.8 2.3E-05 5E-10 56.4 4.1 23 25-47 14-36 (107)
233 cd03369 ABCC_NFT1 Domain 2 of 97.8 1.9E-05 4.2E-10 61.2 3.9 36 24-59 32-67 (207)
234 PRK14731 coaE dephospho-CoA ki 97.8 2.8E-05 6.1E-10 61.1 4.9 38 24-67 3-40 (208)
235 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.8 1.5E-05 3.1E-10 63.0 3.3 37 25-61 47-83 (224)
236 cd03267 ABC_NatA_like Similar 97.8 1.6E-05 3.4E-10 63.2 3.4 36 24-59 45-80 (236)
237 KOG2878|consensus 97.8 1.8E-05 3.8E-10 63.8 3.6 99 24-124 29-159 (282)
238 PRK14491 putative bifunctional 97.8 3.9E-05 8.4E-10 69.5 6.2 42 25-66 9-50 (597)
239 COG1341 Predicted GTPase or GT 97.8 2E-05 4.2E-10 68.2 4.1 48 23-70 70-117 (398)
240 COG1618 Predicted nucleotide k 97.8 2.4E-05 5.2E-10 60.6 4.2 31 25-55 4-34 (179)
241 cd03236 ABC_RNaseL_inhibitor_d 97.8 2.3E-05 4.9E-10 63.6 4.3 41 18-58 18-58 (255)
242 PRK13537 nodulation ABC transp 97.8 1.4E-05 3.1E-10 66.3 3.1 39 25-63 32-70 (306)
243 PRK11153 metN DL-methionine tr 97.8 1.3E-05 2.8E-10 67.6 2.9 36 25-60 30-65 (343)
244 PRK13650 cbiO cobalt transport 97.8 1.5E-05 3.4E-10 65.0 3.3 36 24-59 31-66 (279)
245 PRK10619 histidine/lysine/argi 97.8 1.7E-05 3.8E-10 63.6 3.5 36 24-59 29-64 (257)
246 PRK13639 cbiO cobalt transport 97.8 1.7E-05 3.7E-10 64.6 3.5 36 24-59 26-61 (275)
247 COG0563 Adk Adenylate kinase a 97.8 1.8E-05 3.9E-10 61.4 3.4 24 28-51 2-25 (178)
248 PRK11231 fecE iron-dicitrate t 97.8 1.8E-05 4E-10 63.4 3.6 36 24-59 26-61 (255)
249 PRK13647 cbiO cobalt transport 97.8 1.8E-05 3.8E-10 64.5 3.5 36 24-59 29-64 (274)
250 TIGR01978 sufC FeS assembly AT 97.8 1.8E-05 4E-10 62.5 3.5 36 24-59 24-61 (243)
251 COG4619 ABC-type uncharacteriz 97.8 2.5E-05 5.3E-10 61.5 4.1 41 23-63 26-66 (223)
252 PRK13637 cbiO cobalt transport 97.8 1.8E-05 4E-10 64.9 3.5 37 24-60 31-67 (287)
253 TIGR00968 3a0106s01 sulfate AB 97.8 2E-05 4.4E-10 62.5 3.7 36 24-59 24-59 (237)
254 TIGR02314 ABC_MetN D-methionin 97.8 1.6E-05 3.4E-10 67.4 3.1 38 24-61 29-66 (343)
255 cd03213 ABCG_EPDR ABCG transpo 97.8 1.9E-05 4.1E-10 61.1 3.2 38 24-61 33-72 (194)
256 PRK13635 cbiO cobalt transport 97.8 2.1E-05 4.6E-10 64.3 3.7 36 24-59 31-66 (279)
257 PRK10078 ribose 1,5-bisphospho 97.8 2E-05 4.3E-10 60.5 3.3 26 26-51 2-27 (186)
258 PRK13651 cobalt transporter AT 97.8 2.1E-05 4.5E-10 65.4 3.6 37 24-60 31-67 (305)
259 cd03233 ABC_PDR_domain1 The pl 97.8 1.7E-05 3.6E-10 61.8 2.9 37 24-60 31-70 (202)
260 PRK14267 phosphate ABC transpo 97.8 2.2E-05 4.7E-10 62.7 3.6 29 24-52 28-56 (253)
261 PRK13643 cbiO cobalt transport 97.8 2.1E-05 4.5E-10 64.6 3.6 36 25-60 31-66 (288)
262 PRK13652 cbiO cobalt transport 97.8 2.1E-05 4.6E-10 64.1 3.5 36 24-59 28-63 (277)
263 PRK14738 gmk guanylate kinase; 97.8 3.2E-05 7E-10 60.6 4.4 29 21-49 8-36 (206)
264 TIGR03873 F420-0_ABC_ATP propo 97.8 2.2E-05 4.8E-10 62.9 3.6 36 24-59 25-60 (256)
265 COG4559 ABC-type hemin transpo 97.8 2.5E-05 5.3E-10 63.3 3.8 42 24-65 25-66 (259)
266 PRK10253 iron-enterobactin tra 97.8 2.1E-05 4.4E-10 63.6 3.4 36 24-59 31-66 (265)
267 PRK11144 modC molybdate transp 97.8 2E-05 4.4E-10 66.6 3.4 35 25-59 23-57 (352)
268 PRK10418 nikD nickel transport 97.8 2.4E-05 5.1E-10 62.8 3.7 29 24-52 27-55 (254)
269 PRK11308 dppF dipeptide transp 97.8 1.9E-05 4.1E-10 66.3 3.2 36 24-59 39-74 (327)
270 PRK13641 cbiO cobalt transport 97.8 2.2E-05 4.7E-10 64.4 3.5 38 24-61 31-68 (287)
271 cd02040 NifH NifH gene encodes 97.8 3.4E-05 7.3E-10 61.7 4.5 41 27-67 2-42 (270)
272 COG0378 HypB Ni2+-binding GTPa 97.8 3.6E-05 7.9E-10 61.0 4.5 44 23-67 9-53 (202)
273 COG0541 Ffh Signal recognition 97.8 4.2E-05 9E-10 66.9 5.3 51 17-67 90-141 (451)
274 PRK13631 cbiO cobalt transport 97.8 2.1E-05 4.6E-10 65.8 3.4 37 24-60 50-86 (320)
275 PRK14242 phosphate transporter 97.8 2.7E-05 5.8E-10 62.2 3.8 28 24-51 30-57 (253)
276 PRK10419 nikE nickel transport 97.8 2.4E-05 5.3E-10 63.4 3.6 36 24-59 36-71 (268)
277 COG1123 ATPase components of v 97.7 2.6E-05 5.6E-10 69.8 4.0 40 24-63 315-354 (539)
278 PRK14722 flhF flagellar biosyn 97.7 4.5E-05 9.7E-10 65.6 5.3 43 24-66 135-179 (374)
279 PRK13644 cbiO cobalt transport 97.7 2.6E-05 5.6E-10 63.5 3.7 37 24-60 26-62 (274)
280 PRK14494 putative molybdopteri 97.7 3.9E-05 8.5E-10 61.9 4.6 36 27-62 2-37 (229)
281 PRK14271 phosphate ABC transpo 97.7 3.8E-05 8.3E-10 62.7 4.6 52 1-52 1-73 (276)
282 PTZ00088 adenylate kinase 1; P 97.7 4.3E-05 9.4E-10 61.4 4.9 40 23-67 3-42 (229)
283 cd03299 ABC_ModC_like Archeal 97.7 2.3E-05 4.9E-10 62.2 3.2 38 24-61 23-60 (235)
284 COG1117 PstB ABC-type phosphat 97.7 3.3E-05 7.2E-10 62.5 4.2 43 24-66 31-78 (253)
285 PRK11176 lipid transporter ATP 97.7 2.4E-05 5.2E-10 69.4 3.7 35 25-59 368-402 (582)
286 PRK14530 adenylate kinase; Pro 97.7 3.1E-05 6.6E-10 60.8 3.9 25 27-51 4-28 (215)
287 PRK13633 cobalt transporter AT 97.7 2.6E-05 5.6E-10 63.6 3.6 37 24-60 34-70 (280)
288 PRK13536 nodulation factor exp 97.7 2E-05 4.4E-10 66.5 3.1 39 25-63 66-104 (340)
289 cd01394 radB RadB. The archaea 97.7 5.1E-05 1.1E-09 59.2 5.1 40 25-64 18-57 (218)
290 PRK13634 cbiO cobalt transport 97.7 2.7E-05 5.7E-10 64.0 3.6 35 25-59 32-66 (290)
291 PRK05537 bifunctional sulfate 97.7 4.4E-05 9.6E-10 68.7 5.3 48 20-67 386-434 (568)
292 TIGR02142 modC_ABC molybdenum 97.7 2.4E-05 5.3E-10 66.1 3.5 35 25-59 22-56 (354)
293 cd00267 ABC_ATPase ABC (ATP-bi 97.7 3E-05 6.5E-10 57.6 3.6 36 25-60 24-59 (157)
294 cd03300 ABC_PotA_N PotA is an 97.7 2.8E-05 6E-10 61.5 3.6 36 24-59 24-59 (232)
295 TIGR02982 heterocyst_DevA ABC 97.7 2.6E-05 5.6E-10 61.1 3.4 36 24-59 29-64 (220)
296 PRK10851 sulfate/thiosulfate t 97.7 2.2E-05 4.7E-10 66.7 3.1 35 25-59 27-61 (353)
297 PRK11000 maltose/maltodextrin 97.7 2.4E-05 5.1E-10 66.7 3.4 35 25-59 28-62 (369)
298 COG3638 ABC-type phosphate/pho 97.7 3.1E-05 6.7E-10 63.2 3.8 39 25-63 29-67 (258)
299 cd02020 CMPK Cytidine monophos 97.7 3.3E-05 7.1E-10 55.8 3.6 31 28-63 1-31 (147)
300 CHL00131 ycf16 sulfate ABC tra 97.7 2.6E-05 5.7E-10 62.1 3.4 36 24-59 31-68 (252)
301 PRK14241 phosphate transporter 97.7 2.6E-05 5.7E-10 62.6 3.4 28 24-51 28-55 (258)
302 PRK13636 cbiO cobalt transport 97.7 2.4E-05 5.1E-10 64.0 3.2 38 24-61 30-67 (283)
303 cd01124 KaiC KaiC is a circadi 97.7 4.1E-05 8.9E-10 57.7 4.3 39 28-66 1-39 (187)
304 PRK13640 cbiO cobalt transport 97.7 3E-05 6.6E-10 63.4 3.8 30 24-53 31-60 (282)
305 cd02117 NifH_like This family 97.7 4.6E-05 1E-09 59.6 4.6 40 28-67 2-41 (212)
306 PRK12727 flagellar biosynthesi 97.7 4.4E-05 9.4E-10 68.6 5.0 43 24-66 348-392 (559)
307 cd03288 ABCC_SUR2 The SUR doma 97.7 3.4E-05 7.3E-10 62.1 4.0 35 25-59 46-80 (257)
308 PRK15079 oligopeptide ABC tran 97.7 2.4E-05 5.1E-10 65.9 3.2 36 24-59 45-80 (331)
309 PLN02840 tRNA dimethylallyltra 97.7 5.5E-05 1.2E-09 66.0 5.5 49 12-66 8-56 (421)
310 COG2274 SunT ABC-type bacterio 97.7 2.5E-05 5.5E-10 72.0 3.6 37 25-61 498-534 (709)
311 PRK11650 ugpC glycerol-3-phosp 97.7 2.5E-05 5.3E-10 66.4 3.2 35 25-59 29-63 (356)
312 PRK13547 hmuV hemin importer A 97.7 2.8E-05 6E-10 63.6 3.4 29 25-53 26-54 (272)
313 PRK13642 cbiO cobalt transport 97.7 3.2E-05 6.8E-10 63.1 3.7 36 24-59 31-66 (277)
314 PRK13546 teichoic acids export 97.7 2.8E-05 6.1E-10 63.3 3.5 35 25-59 49-83 (264)
315 TIGR01287 nifH nitrogenase iro 97.7 4.2E-05 9.1E-10 61.8 4.5 40 28-67 2-41 (275)
316 TIGR03522 GldA_ABC_ATP gliding 97.7 2.7E-05 5.8E-10 64.3 3.3 38 24-61 26-63 (301)
317 COG1419 FlhF Flagellar GTP-bin 97.7 4.5E-05 9.7E-10 66.2 4.8 43 25-67 202-246 (407)
318 PRK14235 phosphate transporter 97.7 3.5E-05 7.5E-10 62.4 3.9 27 25-51 44-70 (267)
319 COG4608 AppF ABC-type oligopep 97.7 3.2E-05 7E-10 63.8 3.7 40 24-63 37-76 (268)
320 PRK14238 phosphate transporter 97.7 3.8E-05 8.2E-10 62.4 4.1 28 24-51 48-75 (271)
321 PRK11432 fbpC ferric transport 97.7 2.8E-05 6E-10 66.0 3.4 35 25-59 31-65 (351)
322 PRK14737 gmk guanylate kinase; 97.7 3.9E-05 8.5E-10 59.6 4.0 27 25-51 3-29 (186)
323 PRK13230 nitrogenase reductase 97.7 4.5E-05 9.8E-10 62.0 4.5 40 27-66 2-41 (279)
324 TIGR01186 proV glycine betaine 97.7 2.6E-05 5.7E-10 66.6 3.2 37 25-61 18-54 (363)
325 PRK14247 phosphate ABC transpo 97.7 3.1E-05 6.8E-10 61.7 3.5 28 24-51 27-54 (250)
326 cd03291 ABCC_CFTR1 The CFTR su 97.7 3.3E-05 7.1E-10 63.7 3.7 35 24-58 61-95 (282)
327 PRK13185 chlL protochlorophyll 97.7 6.1E-05 1.3E-09 60.7 5.1 41 26-66 2-42 (270)
328 PRK10744 pstB phosphate transp 97.7 3.5E-05 7.5E-10 62.0 3.7 28 24-51 37-64 (260)
329 TIGR03265 PhnT2 putative 2-ami 97.7 3E-05 6.5E-10 65.8 3.4 35 25-59 29-63 (353)
330 COG0552 FtsY Signal recognitio 97.7 4.6E-05 9.9E-10 64.7 4.4 45 22-66 135-179 (340)
331 PRK09825 idnK D-gluconate kina 97.7 4.1E-05 8.9E-10 58.9 3.8 35 26-65 3-37 (176)
332 PRK06761 hypothetical protein; 97.7 4.5E-05 9.8E-10 63.3 4.3 34 26-59 3-36 (282)
333 PRK14251 phosphate ABC transpo 97.7 3.3E-05 7.2E-10 61.6 3.4 28 24-51 28-55 (251)
334 COG4586 ABC-type uncharacteriz 97.7 3.2E-05 7E-10 64.5 3.3 44 25-68 49-92 (325)
335 PRK10070 glycine betaine trans 97.7 3.3E-05 7.1E-10 66.8 3.5 37 24-60 52-88 (400)
336 PRK14248 phosphate ABC transpo 97.7 3.7E-05 8.1E-10 62.1 3.5 27 25-51 46-72 (268)
337 cd02032 Bchl_like This family 97.7 5.8E-05 1.3E-09 60.8 4.6 39 28-66 2-40 (267)
338 COG4088 Predicted nucleotide k 97.7 3.4E-05 7.3E-10 62.3 3.1 36 27-62 2-37 (261)
339 PRK14262 phosphate ABC transpo 97.7 3.9E-05 8.4E-10 61.1 3.5 28 24-51 27-54 (250)
340 cd03217 ABC_FeS_Assembly ABC-t 97.7 4E-05 8.8E-10 59.4 3.5 37 24-60 24-62 (200)
341 TIGR02237 recomb_radB DNA repa 97.7 7.9E-05 1.7E-09 57.7 5.1 40 25-64 11-50 (209)
342 PRK09452 potA putrescine/sperm 97.7 3.3E-05 7.2E-10 66.2 3.2 34 25-58 39-72 (375)
343 PF08433 KTI12: Chromatin asso 97.7 4.3E-05 9.3E-10 62.9 3.7 38 27-64 2-39 (270)
344 PRK14273 phosphate ABC transpo 97.7 4.3E-05 9.2E-10 61.1 3.6 29 24-52 31-59 (254)
345 PRK14249 phosphate ABC transpo 97.7 4.4E-05 9.6E-10 60.9 3.7 30 24-53 28-57 (251)
346 PRK10762 D-ribose transporter 97.7 3.5E-05 7.5E-10 67.6 3.3 37 24-60 28-64 (501)
347 COG1132 MdlB ABC-type multidru 97.6 3.9E-05 8.4E-10 68.1 3.6 36 24-59 353-388 (567)
348 PRK09580 sufC cysteine desulfu 97.6 3.6E-05 7.8E-10 61.1 3.0 36 24-59 25-62 (248)
349 PRK10938 putative molybdenum t 97.6 4.3E-05 9.2E-10 66.7 3.8 36 24-59 27-62 (490)
350 PF00004 AAA: ATPase family as 97.6 4.9E-05 1.1E-09 53.6 3.4 23 29-51 1-23 (132)
351 PF13191 AAA_16: AAA ATPase do 97.6 4E-05 8.7E-10 57.2 3.1 43 23-65 21-63 (185)
352 PRK04220 2-phosphoglycerate ki 97.6 7.9E-05 1.7E-09 62.5 5.2 39 24-66 90-128 (301)
353 PRK09536 btuD corrinoid ABC tr 97.6 3.6E-05 7.8E-10 66.6 3.2 38 24-61 27-64 (402)
354 PRK14259 phosphate ABC transpo 97.6 4.3E-05 9.4E-10 62.0 3.5 28 24-51 37-64 (269)
355 COG1122 CbiO ABC-type cobalt t 97.6 4.4E-05 9.5E-10 61.8 3.5 39 25-63 29-67 (235)
356 TIGR03415 ABC_choXWV_ATP choli 97.6 4.1E-05 8.8E-10 65.9 3.5 36 25-60 49-84 (382)
357 PRK14274 phosphate ABC transpo 97.6 5.4E-05 1.2E-09 60.8 4.0 27 25-51 37-63 (259)
358 cd01983 Fer4_NifH The Fer4_Nif 97.6 7E-05 1.5E-09 49.5 3.9 34 28-61 1-34 (99)
359 PRK14270 phosphate ABC transpo 97.6 4.9E-05 1.1E-09 60.7 3.7 28 24-51 28-55 (251)
360 TIGR02857 CydD thiol reductant 97.6 4.1E-05 8.8E-10 67.3 3.5 35 25-59 347-381 (529)
361 PRK00081 coaE dephospho-CoA ki 97.6 7E-05 1.5E-09 58.2 4.4 37 26-68 2-38 (194)
362 cd00071 GMPK Guanosine monopho 97.6 3.8E-05 8.3E-10 56.7 2.8 25 28-52 1-25 (137)
363 cd03232 ABC_PDR_domain2 The pl 97.6 4.7E-05 1E-09 58.7 3.4 27 24-50 31-57 (192)
364 cd01428 ADK Adenylate kinase ( 97.6 5.8E-05 1.3E-09 57.3 3.9 33 29-66 2-34 (194)
365 PRK14237 phosphate transporter 97.6 5.4E-05 1.2E-09 61.3 3.9 28 24-51 44-71 (267)
366 PRK09700 D-allose transporter 97.6 4.1E-05 8.9E-10 67.2 3.4 36 24-59 29-64 (510)
367 PRK11607 potG putrescine trans 97.6 4E-05 8.7E-10 65.7 3.3 34 25-58 44-77 (377)
368 PRK14531 adenylate kinase; Pro 97.6 5.9E-05 1.3E-09 57.8 3.9 33 27-64 3-35 (183)
369 TIGR03796 NHPM_micro_ABC1 NHPM 97.6 4.1E-05 8.9E-10 69.7 3.5 35 25-59 504-538 (710)
370 PLN02748 tRNA dimethylallyltra 97.6 0.00012 2.7E-09 64.6 6.3 41 23-68 19-61 (468)
371 TIGR03797 NHPM_micro_ABC2 NHPM 97.6 4E-05 8.6E-10 69.6 3.3 35 25-59 478-512 (686)
372 PRK14269 phosphate ABC transpo 97.6 4.9E-05 1.1E-09 60.6 3.5 28 24-51 26-53 (246)
373 PRK04296 thymidine kinase; Pro 97.6 9.5E-05 2E-09 57.3 5.0 41 26-66 2-44 (190)
374 PF13173 AAA_14: AAA domain 97.6 9.9E-05 2.1E-09 53.4 4.8 40 26-66 2-41 (128)
375 PRK11022 dppD dipeptide transp 97.6 4.2E-05 9.1E-10 64.1 3.2 28 24-51 31-58 (326)
376 COG4181 Predicted ABC-type tra 97.6 5.7E-05 1.2E-09 59.7 3.7 42 25-66 35-76 (228)
377 PRK09700 D-allose transporter 97.6 4.6E-05 1E-09 66.9 3.5 36 25-60 288-323 (510)
378 PRK14240 phosphate transporter 97.6 5.2E-05 1.1E-09 60.4 3.5 28 24-51 27-54 (250)
379 PRK15093 antimicrobial peptide 97.6 4.1E-05 8.9E-10 64.2 3.1 28 24-51 31-58 (330)
380 PRK09473 oppD oligopeptide tra 97.6 3.9E-05 8.4E-10 64.5 2.9 29 24-52 40-68 (330)
381 PRK14733 coaE dephospho-CoA ki 97.6 9.5E-05 2.1E-09 58.6 5.0 41 24-69 4-44 (204)
382 PRK14244 phosphate ABC transpo 97.6 6E-05 1.3E-09 60.2 3.9 28 24-51 29-56 (251)
383 PRK05057 aroK shikimate kinase 97.6 7.8E-05 1.7E-09 57.0 4.3 34 26-64 4-37 (172)
384 cd03238 ABC_UvrA The excision 97.6 5.2E-05 1.1E-09 58.6 3.4 24 24-47 19-42 (176)
385 PF13245 AAA_19: Part of AAA d 97.6 0.0001 2.2E-09 49.6 4.4 38 26-63 10-51 (76)
386 cd02022 DPCK Dephospho-coenzym 97.6 4.3E-05 9.4E-10 58.4 2.9 36 28-69 1-36 (179)
387 PRK14268 phosphate ABC transpo 97.6 5.4E-05 1.2E-09 60.9 3.5 28 24-51 36-63 (258)
388 PRK09984 phosphonate/organopho 97.6 5.1E-05 1.1E-09 61.0 3.4 29 24-52 28-56 (262)
389 PLN02165 adenylate isopentenyl 97.6 8.9E-05 1.9E-09 63.0 5.0 36 25-65 42-77 (334)
390 PRK03695 vitamin B12-transport 97.6 4.4E-05 9.6E-10 61.2 3.0 35 24-59 20-54 (248)
391 KOG2749|consensus 97.6 9.2E-05 2E-09 63.6 5.0 46 24-69 101-146 (415)
392 PF13555 AAA_29: P-loop contai 97.6 8E-05 1.7E-09 48.7 3.6 28 26-53 23-50 (62)
393 PRK10261 glutathione transport 97.6 5E-05 1.1E-09 68.7 3.6 35 24-58 40-74 (623)
394 PRK14256 phosphate ABC transpo 97.6 5.9E-05 1.3E-09 60.3 3.6 28 24-51 28-55 (252)
395 PRK15439 autoinducer 2 ABC tra 97.6 4.9E-05 1.1E-09 67.0 3.4 36 24-59 35-70 (510)
396 PRK14272 phosphate ABC transpo 97.6 6.2E-05 1.4E-09 59.9 3.7 29 24-52 28-56 (252)
397 PRK14263 phosphate ABC transpo 97.6 5.5E-05 1.2E-09 61.2 3.4 29 24-52 32-60 (261)
398 TIGR01193 bacteriocin_ABC ABC- 97.6 4.9E-05 1.1E-09 69.2 3.5 35 25-59 499-533 (708)
399 PRK11174 cysteine/glutathione 97.6 4.9E-05 1.1E-09 67.6 3.3 32 25-57 375-406 (588)
400 TIGR03258 PhnT 2-aminoethylpho 97.6 5.2E-05 1.1E-09 64.7 3.3 35 25-59 30-66 (362)
401 TIGR02203 MsbA_lipidA lipid A 97.6 5.9E-05 1.3E-09 66.6 3.8 36 24-59 356-391 (571)
402 cd00544 CobU Adenosylcobinamid 97.6 0.00027 5.9E-09 54.3 7.0 30 28-60 1-30 (169)
403 PRK14730 coaE dephospho-CoA ki 97.6 8.6E-05 1.9E-09 58.0 4.3 37 27-68 2-38 (195)
404 PRK14246 phosphate ABC transpo 97.6 6.9E-05 1.5E-09 60.5 3.9 31 25-55 35-65 (257)
405 PRK15064 ABC transporter ATP-b 97.6 5.7E-05 1.2E-09 66.7 3.7 35 24-58 25-59 (530)
406 TIGR03269 met_CoM_red_A2 methy 97.6 5.5E-05 1.2E-09 66.6 3.5 35 25-59 309-343 (520)
407 PRK11819 putative ABC transpor 97.6 5.9E-05 1.3E-09 67.2 3.6 35 24-58 31-65 (556)
408 PRK14236 phosphate transporter 97.6 6E-05 1.3E-09 61.2 3.4 28 24-51 49-76 (272)
409 PRK10982 galactose/methyl gala 97.6 5.4E-05 1.2E-09 66.2 3.3 36 24-59 22-57 (491)
410 PRK14258 phosphate ABC transpo 97.6 6.5E-05 1.4E-09 60.6 3.5 30 24-53 31-60 (261)
411 PRK10790 putative multidrug tr 97.6 5.6E-05 1.2E-09 67.4 3.4 35 25-59 366-400 (592)
412 TIGR03269 met_CoM_red_A2 methy 97.6 6.6E-05 1.4E-09 66.1 3.8 36 24-59 24-61 (520)
413 PRK11160 cysteine/glutathione 97.6 5.6E-05 1.2E-09 67.5 3.4 35 25-59 365-399 (574)
414 PRK10789 putative multidrug tr 97.6 5.8E-05 1.3E-09 67.3 3.5 35 25-59 340-374 (569)
415 COG1118 CysA ABC-type sulfate/ 97.6 6.7E-05 1.5E-09 63.4 3.6 38 25-62 27-64 (345)
416 TIGR02204 MsbA_rel ABC transpo 97.6 7.4E-05 1.6E-09 66.2 4.1 33 25-57 365-397 (576)
417 COG4555 NatA ABC-type Na+ tran 97.6 8.7E-05 1.9E-09 59.7 4.1 45 23-67 25-69 (245)
418 TIGR01281 DPOR_bchL light-inde 97.6 0.0001 2.2E-09 59.3 4.5 39 28-66 2-40 (268)
419 PRK14254 phosphate ABC transpo 97.6 6.8E-05 1.5E-09 61.5 3.6 27 25-51 64-90 (285)
420 TIGR00958 3a01208 Conjugate Tr 97.6 6.2E-05 1.3E-09 68.9 3.7 34 25-58 506-539 (711)
421 PRK14723 flhF flagellar biosyn 97.6 0.0001 2.2E-09 68.5 5.0 42 25-66 184-227 (767)
422 PRK08356 hypothetical protein; 97.6 8.2E-05 1.8E-09 57.6 3.8 36 25-66 4-39 (195)
423 PRK10522 multidrug transporter 97.6 5.4E-05 1.2E-09 67.1 3.1 36 25-60 348-383 (547)
424 PRK14253 phosphate ABC transpo 97.6 8E-05 1.7E-09 59.3 3.8 29 24-52 27-55 (249)
425 PRK14243 phosphate transporter 97.6 8.1E-05 1.8E-09 60.2 3.9 28 24-51 34-61 (264)
426 TIGR00073 hypB hydrogenase acc 97.6 0.00015 3.2E-09 56.6 5.3 41 23-64 19-59 (207)
427 PRK14265 phosphate ABC transpo 97.6 7.4E-05 1.6E-09 60.8 3.7 27 25-51 45-71 (274)
428 PF05729 NACHT: NACHT domain 97.5 8.2E-05 1.8E-09 54.2 3.6 28 27-54 1-28 (166)
429 PRK13973 thymidylate kinase; P 97.5 0.00013 2.8E-09 57.4 4.9 36 25-60 2-37 (213)
430 TIGR03878 thermo_KaiC_2 KaiC d 97.5 0.00012 2.6E-09 59.4 4.8 40 25-64 35-74 (259)
431 cd03289 ABCC_CFTR2 The CFTR su 97.5 7.7E-05 1.7E-09 61.3 3.7 35 24-59 28-62 (275)
432 COG4598 HisP ABC-type histidin 97.5 9.5E-05 2.1E-09 58.9 4.0 37 22-58 28-64 (256)
433 PRK14252 phosphate ABC transpo 97.5 8.2E-05 1.8E-09 60.0 3.8 28 24-51 40-67 (265)
434 PRK10762 D-ribose transporter 97.5 6.2E-05 1.3E-09 66.1 3.3 35 25-59 277-311 (501)
435 PRK14532 adenylate kinase; Pro 97.5 9.1E-05 2E-09 56.5 3.8 32 28-64 2-33 (188)
436 PRK11288 araG L-arabinose tran 97.5 6.2E-05 1.3E-09 66.1 3.2 35 25-59 278-312 (501)
437 PRK10261 glutathione transport 97.5 7.1E-05 1.5E-09 67.7 3.7 35 25-59 349-383 (623)
438 PRK13657 cyclic beta-1,2-gluca 97.5 6.5E-05 1.4E-09 67.0 3.4 34 25-58 360-393 (588)
439 COG1134 TagH ABC-type polysacc 97.5 8E-05 1.7E-09 60.8 3.6 35 25-59 52-86 (249)
440 PRK11288 araG L-arabinose tran 97.5 6.1E-05 1.3E-09 66.1 3.1 36 24-59 28-63 (501)
441 TIGR03375 type_I_sec_LssB type 97.5 6.8E-05 1.5E-09 68.2 3.5 35 25-59 490-524 (694)
442 TIGR00017 cmk cytidylate kinas 97.5 0.0001 2.2E-09 58.7 4.0 26 26-51 2-27 (217)
443 KOG0635|consensus 97.5 0.00031 6.7E-09 54.4 6.5 46 22-67 27-72 (207)
444 PRK13949 shikimate kinase; Pro 97.5 0.0001 2.2E-09 56.3 3.8 33 28-65 3-35 (169)
445 PRK09361 radB DNA repair and r 97.5 0.00017 3.8E-09 56.5 5.3 39 25-63 22-60 (225)
446 PRK12339 2-phosphoglycerate ki 97.5 0.0001 2.3E-09 57.9 4.0 26 25-50 2-27 (197)
447 cd00984 DnaB_C DnaB helicase C 97.5 0.00015 3.2E-09 57.2 4.9 42 25-66 12-54 (242)
448 PRK15439 autoinducer 2 ABC tra 97.5 6.8E-05 1.5E-09 66.1 3.2 35 25-59 288-322 (510)
449 PRK14260 phosphate ABC transpo 97.5 8.7E-05 1.9E-09 59.7 3.6 28 24-51 31-58 (259)
450 TIGR01842 type_I_sec_PrtD type 97.5 7.7E-05 1.7E-09 66.0 3.6 35 25-59 343-377 (544)
451 PRK13409 putative ATPase RIL; 97.5 8.9E-05 1.9E-09 67.0 4.0 42 17-58 90-131 (590)
452 PRK10982 galactose/methyl gala 97.5 6.5E-05 1.4E-09 65.7 3.0 35 25-59 273-307 (491)
453 PLN02924 thymidylate kinase 97.5 0.00018 3.8E-09 57.5 5.3 37 24-60 14-50 (220)
454 PRK15064 ABC transporter ATP-b 97.5 7E-05 1.5E-09 66.1 3.2 33 25-57 344-376 (530)
455 PF07728 AAA_5: AAA domain (dy 97.5 0.00012 2.5E-09 53.1 3.9 33 29-64 2-34 (139)
456 PRK13975 thymidylate kinase; P 97.5 0.00011 2.5E-09 56.0 4.0 27 26-52 2-28 (196)
457 TIGR03719 ABC_ABC_ChvD ATP-bin 97.5 8.2E-05 1.8E-09 66.2 3.7 35 24-58 29-63 (552)
458 PRK13549 xylose transporter AT 97.5 8E-05 1.7E-09 65.4 3.6 36 24-59 29-66 (506)
459 PRK05506 bifunctional sulfate 97.5 0.00012 2.5E-09 66.5 4.7 47 23-69 457-503 (632)
460 PRK10636 putative ABC transpor 97.5 8.5E-05 1.9E-09 67.4 3.8 35 25-59 337-371 (638)
461 PRK14275 phosphate ABC transpo 97.5 9.3E-05 2E-09 60.7 3.6 27 25-51 64-90 (286)
462 PRK13549 xylose transporter AT 97.5 6.8E-05 1.5E-09 65.9 3.0 35 25-59 287-322 (506)
463 PRK14264 phosphate ABC transpo 97.5 9.4E-05 2E-09 61.3 3.6 27 25-51 70-96 (305)
464 PRK14721 flhF flagellar biosyn 97.5 0.00017 3.6E-09 63.0 5.3 43 24-66 189-233 (420)
465 PF03266 NTPase_1: NTPase; In 97.5 9.3E-05 2E-09 56.8 3.3 25 29-53 2-26 (168)
466 PRK04182 cytidylate kinase; Pr 97.5 9.6E-05 2.1E-09 55.2 3.3 24 28-51 2-25 (180)
467 PRK12338 hypothetical protein; 97.5 0.00011 2.4E-09 62.0 4.0 28 24-51 2-29 (319)
468 TIGR01194 cyc_pep_trnsptr cycl 97.5 7.6E-05 1.7E-09 66.4 3.2 36 25-60 367-402 (555)
469 PRK06731 flhF flagellar biosyn 97.5 0.00022 4.8E-09 58.8 5.7 43 24-66 73-115 (270)
470 COG0237 CoaE Dephospho-CoA kin 97.5 0.00014 3.1E-09 57.5 4.4 37 26-68 2-38 (201)
471 PRK11147 ABC transporter ATPas 97.5 7.8E-05 1.7E-09 67.5 3.2 35 25-59 28-62 (635)
472 PRK13231 nitrogenase reductase 97.5 0.00011 2.5E-09 59.0 3.9 39 27-66 3-41 (264)
473 TIGR02173 cyt_kin_arch cytidyl 97.5 0.0001 2.2E-09 54.7 3.4 34 28-66 2-35 (171)
474 PRK10636 putative ABC transpor 97.5 8.5E-05 1.8E-09 67.5 3.4 35 25-59 26-60 (638)
475 PRK00279 adk adenylate kinase; 97.5 0.00014 3E-09 57.1 4.2 32 28-64 2-33 (215)
476 PF04665 Pox_A32: Poxvirus A32 97.5 0.00015 3.2E-09 59.1 4.4 38 23-60 10-47 (241)
477 PRK09183 transposase/IS protei 97.5 0.00014 3.1E-09 59.2 4.4 38 25-62 101-138 (259)
478 cd01129 PulE-GspE PulE/GspE Th 97.5 0.00014 3E-09 59.5 4.3 35 26-60 80-114 (264)
479 PRK07933 thymidylate kinase; V 97.5 0.00014 3.1E-09 57.5 4.3 37 27-63 1-37 (213)
480 TIGR03420 DnaA_homol_Hda DnaA 97.5 0.00014 3.1E-09 56.5 4.2 42 24-65 36-77 (226)
481 PRK08084 DNA replication initi 97.5 0.00014 3E-09 58.2 4.2 39 27-65 46-84 (235)
482 PRK14266 phosphate ABC transpo 97.5 0.00014 3E-09 58.0 4.2 28 24-51 27-54 (250)
483 PRK13235 nifH nitrogenase redu 97.5 0.00017 3.7E-09 58.5 4.7 42 27-68 2-43 (274)
484 cd00464 SK Shikimate kinase (S 97.5 0.00012 2.5E-09 53.5 3.4 33 29-66 2-34 (154)
485 cd02033 BchX Chlorophyllide re 97.5 0.00028 6.1E-09 59.7 6.1 48 21-68 26-73 (329)
486 PRK15134 microcin C ABC transp 97.5 9.9E-05 2.1E-09 65.2 3.5 34 25-59 311-344 (529)
487 PF13401 AAA_22: AAA domain; P 97.5 7.3E-05 1.6E-09 53.1 2.2 28 25-52 3-30 (131)
488 PF00625 Guanylate_kin: Guanyl 97.5 0.00012 2.7E-09 55.8 3.7 27 26-52 2-28 (183)
489 COG0410 LivF ABC-type branched 97.5 0.00011 2.3E-09 59.7 3.4 44 23-66 26-69 (237)
490 PRK02496 adk adenylate kinase; 97.5 0.00014 3.1E-09 55.4 3.9 25 27-51 2-26 (184)
491 COG4525 TauB ABC-type taurine 97.5 0.00012 2.6E-09 58.9 3.6 35 25-59 30-64 (259)
492 PRK11819 putative ABC transpor 97.5 9.3E-05 2E-09 65.9 3.3 34 25-58 349-382 (556)
493 TIGR02525 plasmid_TraJ plasmid 97.5 0.00016 3.4E-09 62.2 4.6 26 27-52 150-175 (372)
494 PRK11147 ABC transporter ATPas 97.5 9.8E-05 2.1E-09 66.9 3.5 34 25-58 344-377 (635)
495 PRK13232 nifH nitrogenase redu 97.5 0.00018 3.8E-09 58.3 4.7 42 27-68 2-43 (273)
496 PRK14255 phosphate ABC transpo 97.5 0.0001 2.2E-09 58.8 3.2 27 25-51 30-56 (252)
497 PRK14245 phosphate ABC transpo 97.5 0.00011 2.5E-09 58.5 3.5 26 24-49 27-52 (250)
498 PRK13947 shikimate kinase; Pro 97.5 0.00015 3.3E-09 54.2 3.9 34 28-66 3-36 (171)
499 PRK14239 phosphate transporter 97.4 0.00011 2.3E-09 58.6 3.3 26 25-50 30-55 (252)
500 PF00437 T2SE: Type II/IV secr 97.4 0.00013 2.9E-09 58.8 3.8 68 26-97 127-195 (270)
No 1
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.81 E-value=6.1e-20 Score=146.47 Aligned_cols=99 Identities=22% Similarity=0.233 Sum_probs=84.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccC--CCCcccccCCCCChH---HHHHHHhCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVN--VDPACRDVPYLVNVG---ELSMLLLNG 98 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~--~d~~n~d~p~a~d~~---~~l~~L~~g 98 (147)
.++.+|||+|+|||||||+|+.|...+... .+.++++|+||++....+. .+..|||||+|||++ +++..|++|
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g 83 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQG 83 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcC
Confidence 456899999999999999999999999865 6999999999997433221 347899999999988 899999999
Q ss_pred CeeeEeccchhhhhhh------hcceeEEeec
Q psy11490 99 NKLEHQILNFQKLATW------MAFGFAFMRS 124 (147)
Q Consensus 99 ~~i~~p~ydf~~~~~~------~~~g~iive~ 124 (147)
+.|..|+|||.+..+. .+..+||+|+
T Consensus 84 ~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEG 115 (218)
T COG0572 84 KPVDLPVYDYKTHTREPETIKVEPNDVVIVEG 115 (218)
T ss_pred CcccccccchhcccccCCccccCCCcEEEEec
Confidence 9999999999866543 3467999998
No 2
>PTZ00301 uridine kinase; Provisional
Probab=99.74 E-value=5.6e-18 Score=134.37 Aligned_cols=100 Identities=18% Similarity=0.119 Sum_probs=77.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcC-C-CCceeecCCCCCCCCCccc-C-CCCcccccCCCCChH---HHHHHHhC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDK-Q-DNPYVINLDPACRDVPYLV-N-VDPACRDVPYLVNVG---ELSMLLLN 97 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~-g-~~v~vv~lD~~~~~l~~~~-~-~d~~n~d~p~a~d~~---~~l~~L~~ 97 (147)
+.++|||+|+|||||||||+.|.+.+... + ..+.++++|.||+.....+ . ....|||+|++||++ +++..|++
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~ 81 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKS 81 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHc
Confidence 46899999999999999999998777432 2 2366899999998632211 1 225799999999988 77899999
Q ss_pred CCeeeEeccchhhhh------hhhcceeEEeec
Q psy11490 98 GNKLEHQILNFQKLA------TWMAFGFAFMRS 124 (147)
Q Consensus 98 g~~i~~p~ydf~~~~------~~~~~g~iive~ 124 (147)
|+.|..|.|||.... ...+..++|+|+
T Consensus 82 g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEG 114 (210)
T PTZ00301 82 GKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEG 114 (210)
T ss_pred CCcccCCCcccccCCcCCceEEeCCCcEEEEec
Confidence 999999999998542 223456777777
No 3
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.63 E-value=3.4e-16 Score=121.24 Aligned_cols=97 Identities=21% Similarity=0.224 Sum_probs=76.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCC----ceeecCCCCCCCCCc----ccCCCCcccccCCCCChH---HHHHHHh
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDN----PYVINLDPACRDVPY----LVNVDPACRDVPYLVNVG---ELSMLLL 96 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~----v~vv~lD~~~~~l~~----~~~~d~~n~d~p~a~d~~---~~l~~L~ 96 (147)
+|+|+|+||||||||++.|...|...+.. +.++++|.|+..... .......+|++|+++|++ +++..|+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 69999999999999999999999987765 678899998865321 111235678999999987 7788999
Q ss_pred CCCeeeEeccchhhhhh------hhcceeEEeec
Q psy11490 97 NGNKLEHQILNFQKLAT------WMAFGFAFMRS 124 (147)
Q Consensus 97 ~g~~i~~p~ydf~~~~~------~~~~g~iive~ 124 (147)
+|+.+..|.|||..... .....++|+|+
T Consensus 81 ~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG 114 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEG 114 (194)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEE
T ss_pred CCCcccccccccccccceeeeeecCCCCEEEEcc
Confidence 99999999999976432 23446888887
No 4
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.61 E-value=1.8e-15 Score=116.69 Aligned_cols=96 Identities=26% Similarity=0.302 Sum_probs=77.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccCCCCcccccCCCCChH---HHHHHHhCCCeeeEe
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVPYLVNVG---ELSMLLLNGNKLEHQ 104 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~~d~~n~d~p~a~d~~---~~l~~L~~g~~i~~p 104 (147)
+|+|+|+||||||||++.|...+...+.++.++++|.|++.. ........++|++..+|++ +++..|++++.+..|
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~-~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p 79 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR-KTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELP 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc-ccccccCCCCCCCccccHHHHHHHHHHHHCCCeeecc
Confidence 589999999999999999999999888889999999999765 2222334677888888877 778889999999999
Q ss_pred ccchhhhhhh-------hcceeEEeec
Q psy11490 105 ILNFQKLATW-------MAFGFAFMRS 124 (147)
Q Consensus 105 ~ydf~~~~~~-------~~~g~iive~ 124 (147)
.|||.+...- .+..++|+|+
T Consensus 80 ~yd~~~~~~~~~~~~~~~~~~vIIvEG 106 (179)
T cd02028 80 IYDFRTGKRRGYRKLKLPPSGVVILEG 106 (179)
T ss_pred cceeECCccCCCceEEeCCCCEEEEec
Confidence 9999865432 2335777776
No 5
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.61 E-value=1.5e-15 Score=124.97 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=78.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcc--c-----CCCCccccc--CCCCChH---HHHHHH
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYL--V-----NVDPACRDV--PYLVNVG---ELSMLL 95 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~--~-----~~d~~n~d~--p~a~d~~---~~l~~L 95 (147)
+|+|+|+|||||||+++++.+.+...+..+.+|++|+||+.-..+ . .....|||| |+|+|++ +++..|
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 589999999999999999999998888789999999999842211 1 112479999 9999988 789999
Q ss_pred hCCCeeeEeccchh------------hhhhh----hcceeEEeeccc
Q psy11490 96 LNGNKLEHQILNFQ------------KLATW----MAFGFAFMRSSC 126 (147)
Q Consensus 96 ~~g~~i~~p~ydf~------------~~~~~----~~~g~iive~~~ 126 (147)
++|+.++.|+|+|. +...| .++.++|+|+-+
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~~~p~dvIivEGLh 127 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLH 127 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCCcccccCCCcEEEECCCC
Confidence 99999999999772 12222 245689998843
No 6
>KOG1532|consensus
Probab=99.58 E-value=3.8e-16 Score=128.99 Aligned_cols=123 Identities=32% Similarity=0.534 Sum_probs=91.9
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccCCCCccc----ccCCCCChH-----HH
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACR----DVPYLVNVG-----EL 91 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~~d~~n~----d~p~a~d~~-----~~ 91 (147)
+..++|.+|+|+|..|||||||+++|..++...+-...+|||||+.+.+|+..++|+||. +.|..+.++ -+
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 356788999999999999999999999999999888999999999999999999999985 367666544 11
Q ss_pred -----------HHHHh--CCCeeeEeccch---hhhhhhhcceeEEeeccc----cccceEeeCCCCCCCCc
Q psy11490 92 -----------SMLLL--NGNKLEHQILNF---QKLATWMAFGFAFMRSSC----VQANFIKMGPNPTLPPL 143 (147)
Q Consensus 92 -----------l~~L~--~g~~i~~p~ydf---~~~~~~~~~g~iive~~~----~~~~~ii~~p~~~~~~~ 143 (147)
..+|. +++.+...+-|- ++.++|+++|.||.|+-+ +-=-|+||||+-+-|.+
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~t 165 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTT 165 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchh
Confidence 11221 122222222222 356799999999999822 22249999999988864
No 7
>PLN02348 phosphoribulokinase
Probab=99.57 E-value=8.9e-15 Score=125.51 Aligned_cols=101 Identities=18% Similarity=0.127 Sum_probs=76.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcC---------------CCCceeecCCCCCCCCCcccCCCCcccccCCCCCh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDK---------------QDNPYVINLDPACRDVPYLVNVDPACRDVPYLVNV 88 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~---------------g~~v~vv~lD~~~~~l~~~~~~d~~n~d~p~a~d~ 88 (147)
.++++|+|+|+||||||||++.|.+.|... +..+.++++|+|+..-.......-.++.+|+++|+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a~df 126 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNF 126 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCcccccH
Confidence 578999999999999999999999999743 23578999999986311111111234457888888
Q ss_pred H---HHHHHHhCCCeeeEeccchhhhh-----hhhcceeEEeec
Q psy11490 89 G---ELSMLLLNGNKLEHQILNFQKLA-----TWMAFGFAFMRS 124 (147)
Q Consensus 89 ~---~~l~~L~~g~~i~~p~ydf~~~~-----~~~~~g~iive~ 124 (147)
+ +++..|++|+.|..|+|||.... ...+..++|||+
T Consensus 127 Dll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEG 170 (395)
T PLN02348 127 DLMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEG 170 (395)
T ss_pred HHHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEec
Confidence 7 77889999999999999998542 223346788887
No 8
>PRK05439 pantothenate kinase; Provisional
Probab=99.57 E-value=8.2e-15 Score=122.57 Aligned_cols=105 Identities=9% Similarity=0.050 Sum_probs=79.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhc--CCCCceeecCCCCCCCCCcccCCC-CcccccCCCCChH---HHHHHH
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYD--KQDNPYVINLDPACRDVPYLVNVD-PACRDVPYLVNVG---ELSMLL 95 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~--~g~~v~vv~lD~~~~~l~~~~~~d-~~n~d~p~a~d~~---~~l~~L 95 (147)
..+.|++|||+|++||||||+|+.|...+.. .+..+.++++|.|+.....-.... ..++++|+++|++ +++..|
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHH
Confidence 4567999999999999999999999998865 356799999999996532211111 2346789999987 778899
Q ss_pred hCCCe-eeEeccchhhhhhh-------hcceeEEeeccc
Q psy11490 96 LNGNK-LEHQILNFQKLATW-------MAFGFAFMRSSC 126 (147)
Q Consensus 96 ~~g~~-i~~p~ydf~~~~~~-------~~~g~iive~~~ 126 (147)
++|+. +..|.|||...... .+..++|+|+-+
T Consensus 162 k~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~ 200 (311)
T PRK05439 162 KSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLN 200 (311)
T ss_pred HcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCch
Confidence 99986 99999999865422 223567776633
No 9
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.54 E-value=1.4e-14 Score=120.11 Aligned_cols=105 Identities=10% Similarity=0.080 Sum_probs=77.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhc--CCCCceeecCCCCCCCCCcccCC-CCcccccCCCCChH---HHHHHH
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYD--KQDNPYVINLDPACRDVPYLVNV-DPACRDVPYLVNVG---ELSMLL 95 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~--~g~~v~vv~lD~~~~~l~~~~~~-d~~n~d~p~a~d~~---~~l~~L 95 (147)
..+.|.+|||+|++||||||+++.|...+.. .++.+.++++|.|+......... -..++++|+++|++ ..+..|
T Consensus 58 ~~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 58 GAKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHH
Confidence 3567899999999999999999999888873 34579999999999652211111 13456789999987 678888
Q ss_pred hCCCe-eeEeccchhhhhhh-------hcceeEEeeccc
Q psy11490 96 LNGNK-LEHQILNFQKLATW-------MAFGFAFMRSSC 126 (147)
Q Consensus 96 ~~g~~-i~~p~ydf~~~~~~-------~~~g~iive~~~ 126 (147)
++|+. +..|+|||...... .+..++|+|+-+
T Consensus 138 k~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~ 176 (290)
T TIGR00554 138 KSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLN 176 (290)
T ss_pred HCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCch
Confidence 99875 99999999754321 234567776644
No 10
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.50 E-value=2.5e-14 Score=113.85 Aligned_cols=97 Identities=9% Similarity=0.060 Sum_probs=70.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhc--CCCCceeecCCCCCCCCCc-ccCCCCcccccCCCCChH---HHHHHHhCC-Ce
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYD--KQDNPYVINLDPACRDVPY-LVNVDPACRDVPYLVNVG---ELSMLLLNG-NK 100 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~--~g~~v~vv~lD~~~~~l~~-~~~~d~~n~d~p~a~d~~---~~l~~L~~g-~~ 100 (147)
+|||+|+||||||||++.|...+.. .+..+.++++|.||..... .......+++.|+++|++ +++..|+.| +.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 5899999999999999999999975 4567999999999864221 111112235678999977 678888884 78
Q ss_pred eeEeccchhhhhh-------hhcceeEEeec
Q psy11490 101 LEHQILNFQKLAT-------WMAFGFAFMRS 124 (147)
Q Consensus 101 i~~p~ydf~~~~~-------~~~~g~iive~ 124 (147)
+..|.|||..... ..+..++|+|+
T Consensus 81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG 111 (220)
T cd02025 81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEG 111 (220)
T ss_pred EEccccceeccccCCCCceecCCCCEEEECC
Confidence 9999999986431 22334666665
No 11
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.49 E-value=1.2e-13 Score=107.62 Aligned_cols=85 Identities=25% Similarity=0.277 Sum_probs=68.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCc---ccCCCCcccccCCCCChH---HHHHHHhC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPY---LVNVDPACRDVPYLVNVG---ELSMLLLN 97 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~---~~~~d~~n~d~p~a~d~~---~~l~~L~~ 97 (147)
.++.+|+|+|+||||||||++.|.+.+. +..+.++++|.|+..... .... ..+|++++++|++ +.+..|+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~ 80 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDSYYKDQSHLSFEERV-KTNYDHPDAFDHDLLIEHLKALKA 80 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCccccCcccCCHHHhc-ccCccCcccccHHHHHHHHHHHHc
Confidence 4789999999999999999999999983 446899999999875321 1222 3567899999977 67888889
Q ss_pred CCeeeEeccchhhh
Q psy11490 98 GNKLEHQILNFQKL 111 (147)
Q Consensus 98 g~~i~~p~ydf~~~ 111 (147)
++.+..|.||+...
T Consensus 81 ~~~v~~p~~d~~~~ 94 (209)
T PRK05480 81 GKAIEIPVYDYTEH 94 (209)
T ss_pred CCccccCccccccc
Confidence 99999999999754
No 12
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.47 E-value=1.8e-13 Score=106.93 Aligned_cols=89 Identities=24% Similarity=0.213 Sum_probs=69.3
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCccc--CCCCcccccCCCCChH---HHHHHH
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLV--NVDPACRDVPYLVNVG---ELSMLL 95 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~--~~d~~n~d~p~a~d~~---~~l~~L 95 (147)
|...++.+|+|+|+||||||||++.|.+.+.. ..+.++++|.|+....... .....+|+.++++|.. +.+..|
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 78 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNL 78 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHH
Confidence 44567899999999999999999999999875 3588999999875422111 1124457788888865 678889
Q ss_pred hCCCeeeEeccchhhh
Q psy11490 96 LNGNKLEHQILNFQKL 111 (147)
Q Consensus 96 ~~g~~i~~p~ydf~~~ 111 (147)
+.|+.+..|.||+...
T Consensus 79 ~~g~~v~~p~yd~~~~ 94 (207)
T TIGR00235 79 KNGSPIDVPVYDYVNH 94 (207)
T ss_pred HCCCCEecccceeecC
Confidence 9999999999999643
No 13
>PRK15453 phosphoribulokinase; Provisional
Probab=99.46 E-value=1.7e-13 Score=113.44 Aligned_cols=84 Identities=15% Similarity=0.071 Sum_probs=68.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCC----CCcc---cCCCCccccc--CCCCChH---HH
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD----VPYL---VNVDPACRDV--PYLVNVG---EL 91 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~----l~~~---~~~d~~n~d~--p~a~d~~---~~ 91 (147)
.++++|+|+|.|||||||+++.+.+.+...+..+.+++.|.|++. +... ....-.|||| |+|+|++ ++
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~ 82 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQL 82 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 356799999999999999999999999877777999999999983 1110 1112348998 9999988 78
Q ss_pred HHHHhCCCeeeEeccc
Q psy11490 92 SMLLLNGNKLEHQILN 107 (147)
Q Consensus 92 l~~L~~g~~i~~p~yd 107 (147)
+..|++++.+..|.|+
T Consensus 83 l~~l~~~~~g~~~~Y~ 98 (290)
T PRK15453 83 FREYGETGTGKTRKYL 98 (290)
T ss_pred HHHHhcCCCcceeecc
Confidence 8999999888889886
No 14
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.44 E-value=2.5e-14 Score=115.35 Aligned_cols=60 Identities=38% Similarity=0.632 Sum_probs=44.2
Q ss_pred EEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccCCCCccc----ccCCCCChHH
Q psy11490 31 VLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACR----DVPYLVNVGE 90 (147)
Q Consensus 31 I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~~d~~n~----d~p~a~d~~~ 90 (147)
|+||+||||||+|+.+.+++...++++.+|||||+...++|.+++|+||+ +.|+.+++++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGP 64 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGP 64 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--H
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCC
Confidence 68999999999999999999999999999999999999999999999998 4788888873
No 15
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.42 E-value=6e-13 Score=104.06 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=62.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccC--CCCcccccCCCCChH---HHHHHHhCCCeee
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVN--VDPACRDVPYLVNVG---ELSMLLLNGNKLE 102 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~--~d~~n~d~p~a~d~~---~~l~~L~~g~~i~ 102 (147)
+|+|+|+|||||||+|+.|...+. .+.++++|.||........ ....+||+|+++|++ +++..|++++.+.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~ 76 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP----NCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFP 76 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC----CCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCcc
Confidence 589999999999999999999873 3889999999976332111 135789999999987 7788899988777
Q ss_pred Eeccchhh
Q psy11490 103 HQILNFQK 110 (147)
Q Consensus 103 ~p~ydf~~ 110 (147)
.+.+++..
T Consensus 77 ~~~~~~~~ 84 (187)
T cd02024 77 KFLRSHGN 84 (187)
T ss_pred CcccCccc
Confidence 67666654
No 16
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.41 E-value=9e-13 Score=101.85 Aligned_cols=83 Identities=20% Similarity=0.237 Sum_probs=65.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccC--CCCcccccCCCCChH---HHHHHHhCCCeee
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVN--VDPACRDVPYLVNVG---ELSMLLLNGNKLE 102 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~--~d~~n~d~p~a~d~~---~~l~~L~~g~~i~ 102 (147)
+|+|+|+||||||||++.|...+ .+..+.++++|.|+........ ....+++++.+++++ +.+..|..++++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 78 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVE 78 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEe
Confidence 58999999999999999999988 3557999999999976543221 113456788888877 5677888899999
Q ss_pred Eeccchhhhh
Q psy11490 103 HQILNFQKLA 112 (147)
Q Consensus 103 ~p~ydf~~~~ 112 (147)
.|.||+....
T Consensus 79 ~p~~d~~~~~ 88 (198)
T cd02023 79 IPVYDFKTHS 88 (198)
T ss_pred ccccccccCc
Confidence 9999997654
No 17
>PLN02796 D-glycerate 3-kinase
Probab=99.40 E-value=5.5e-13 Score=112.96 Aligned_cols=102 Identities=13% Similarity=0.150 Sum_probs=75.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccCCCCcccc-----------cCCCCChH--
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRD-----------VPYLVNVG-- 89 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~~d~~n~d-----------~p~a~d~~-- 89 (147)
.++|.+|+|+|++||||||+++.|...+...+..+..+++|.+|.. ..... ..+++ .+-.+|+.
T Consensus 97 ~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt--~~e~~-~L~~q~P~n~Ll~~RG~PgThDl~Ll 173 (347)
T PLN02796 97 EIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT--AADQA-KLAEANPGNALLELRGNAGSHDLALG 173 (347)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc--hhhHH-HHHhhCcchhhhhcCCCCchhHHHHH
Confidence 3578999999999999999999999999887778999999999943 22111 11112 34456764
Q ss_pred -HHHHHHh----CCCeeeEeccchhhhh---------hhh----cceeEEeecccc
Q psy11490 90 -ELSMLLL----NGNKLEHQILNFQKLA---------TWM----AFGFAFMRSSCV 127 (147)
Q Consensus 90 -~~l~~L~----~g~~i~~p~ydf~~~~---------~~~----~~g~iive~~~~ 127 (147)
+++..|+ .++.+..|.|||.... .|. +..+||+|+-|+
T Consensus 174 ~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~v 229 (347)
T PLN02796 174 VETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWML 229 (347)
T ss_pred HHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCccc
Confidence 5667776 6789999999998732 343 347899999774
No 18
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.39 E-value=7e-13 Score=118.98 Aligned_cols=93 Identities=20% Similarity=0.233 Sum_probs=72.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccCCCCcccccCCCCChH---HHHHHHhCCCe
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVPYLVNVG---ELSMLLLNGNK 100 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~~d~~n~d~p~a~d~~---~~l~~L~~g~~ 100 (147)
..+.+|+|+|+||||||||++.|...+. .+.+|.+|.|+... ... ..+||+|+++|++ +++..|++|+.
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp----~vgvIsmDdy~~~~---~~i-~~nfD~P~a~D~d~L~enL~~Lr~Gks 134 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVISMDNYNDSS---RII-DGNFDDPRLTDYDTLLDNIHDLKAGKS 134 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCC----CcEEEEEcceecch---hhh-CccCCChhhcchhHHHHHHHHHhCCCc
Confidence 4578999999999999999999998863 47899999986321 112 3678999999876 77999999999
Q ss_pred eeEeccchhhhhh-------hhcceeEEeec
Q psy11490 101 LEHQILNFQKLAT-------WMAFGFAFMRS 124 (147)
Q Consensus 101 i~~p~ydf~~~~~-------~~~~g~iive~ 124 (147)
+..|.|||..... ..+..++|+|+
T Consensus 135 V~iPiYDf~t~~r~~~~~i~v~p~~VVIVEG 165 (656)
T PLN02318 135 VQVPIYDFKSSSRVGYRTLEVPSSRIVIIEG 165 (656)
T ss_pred eecCccccccCcccCCceeecCCCcEEEEec
Confidence 9999999985432 12345777766
No 19
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.38 E-value=6.4e-13 Score=115.28 Aligned_cols=105 Identities=14% Similarity=0.167 Sum_probs=73.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccCC---CC-----cccccCCCCChH---HH
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNV---DP-----ACRDVPYLVNVG---EL 91 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~~---d~-----~n~d~p~a~d~~---~~ 91 (147)
..+|++|||+|++|||||||++.|...+...+.++.+|++|+||......... +. .....|...|+. ++
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~e~ 288 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRERNPGNALLELRGNAGSHDLQFSVET 288 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhhCccchhhcccCCCccccHhhHHHH
Confidence 34789999999999999999999999998777789999999999531111110 00 111234556654 34
Q ss_pred HHHH----hCCCeeeEeccchhhhh---------hhh----cceeEEeecccc
Q psy11490 92 SMLL----LNGNKLEHQILNFQKLA---------TWM----AFGFAFMRSSCV 127 (147)
Q Consensus 92 l~~L----~~g~~i~~p~ydf~~~~---------~~~----~~g~iive~~~~ 127 (147)
+.+| ++|+.|..|.|||...- .|. +..+||+|+-|+
T Consensus 289 L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~v 341 (460)
T PLN03046 289 LEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWML 341 (460)
T ss_pred HHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHh
Confidence 4444 67899999999998732 243 347999999663
No 20
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.32 E-value=7.6e-12 Score=99.39 Aligned_cols=90 Identities=16% Similarity=0.212 Sum_probs=68.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee-ecCCCCCCCCCcc-cCCCCcccccCCCCChH---HHHHHHhC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV-INLDPACRDVPYL-VNVDPACRDVPYLVNVG---ELSMLLLN 97 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v-v~lD~~~~~l~~~-~~~d~~n~d~p~a~d~~---~~l~~L~~ 97 (147)
..++.+++|+|++|||||||++.|.+.+...++.+.+ +.+|.++..-... ...-...++.++.+|++ +.+..|+.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~l~~l~~ 109 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAALLRRLRA 109 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHHHHHHHHc
Confidence 3568999999999999999999999999998888888 9999988542111 11112234577888876 56777887
Q ss_pred CC-eeeEeccchhhhh
Q psy11490 98 GN-KLEHQILNFQKLA 112 (147)
Q Consensus 98 g~-~i~~p~ydf~~~~ 112 (147)
++ ++..|.||+....
T Consensus 110 ~~~~i~~P~yD~~~~~ 125 (229)
T PRK09270 110 GDDEVYWPVFDRSLED 125 (229)
T ss_pred CCCceecccCCcccCC
Confidence 76 8999999996543
No 21
>PRK07667 uridine kinase; Provisional
Probab=99.31 E-value=8.1e-12 Score=97.07 Aligned_cols=88 Identities=15% Similarity=0.051 Sum_probs=62.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccCCCCcccccC--CCCChH---HH-HHHHhC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVP--YLVNVG---EL-SMLLLN 97 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~~d~~n~d~p--~a~d~~---~~-l~~L~~ 97 (147)
..+.+|+|.|++||||||+++.|.+.+...|..+.++++|+|+.........+..++... .++|+. .. +..|+.
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~ 94 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQN 94 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcC
Confidence 345899999999999999999999999988888999999998864221100001111111 134543 22 456778
Q ss_pred CCeeeEeccchhhh
Q psy11490 98 GNKLEHQILNFQKL 111 (147)
Q Consensus 98 g~~i~~p~ydf~~~ 111 (147)
++.+..|.||+...
T Consensus 95 ~~~i~~P~~d~~~~ 108 (193)
T PRK07667 95 ETKLTLPFYHDETD 108 (193)
T ss_pred CCeEEEeeeccccc
Confidence 88999999999754
No 22
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.31 E-value=5e-13 Score=103.42 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=71.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccCCCCcccccCCCCChH-HHHHHHhCCCeeeEe
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVPYLVNVG-ELSMLLLNGNKLEHQ 104 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~~d~~n~d~p~a~d~~-~~l~~L~~g~~i~~p 104 (147)
+++++|+|-+|+||||+++.+.+.+ ....++|..........+... +.+.|.|+.+..+ |...+..+.+.|..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l----~~~~ivNyG~~Mle~A~k~gl-ve~rD~~Rklp~e~Q~~lq~~Aa~rI~~- 77 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL----VKHKIVNYGDLMLEIAKKKGL-VEHRDEMRKLPLENQRELQAEAAKRIAE- 77 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH----hhceeeeHhHHHHHHHHHhCC-cccHHHHhcCCHHHHHHHHHHHHHHHHH-
Confidence 6899999999999999999998887 235667665555443333333 6677888888777 55555555555533
Q ss_pred ccchhhhhhhhcceeEEeeccccccceEeeCCCCCCCCce
Q psy11490 105 ILNFQKLATWMAFGFAFMRSSCVQANFIKMGPNPTLPPLV 144 (147)
Q Consensus 105 ~ydf~~~~~~~~~g~iive~~~~~~~~ii~~p~~~~~~~~ 144 (147)
+... +|+|+||+ |+||.||||||-
T Consensus 78 ----------~~~~-iivDtH~~-----IkTP~GylpgLP 101 (189)
T COG2019 78 ----------MALE-IIVDTHAT-----IKTPAGYLPGLP 101 (189)
T ss_pred ----------hhhc-eEEeccce-----ecCCCccCCCCc
Confidence 1111 99999999 999999999995
No 23
>PRK06696 uridine kinase; Validated
Probab=99.28 E-value=8.9e-12 Score=98.63 Aligned_cols=86 Identities=13% Similarity=0.151 Sum_probs=60.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccCCCCcccccC-----CCCChH---HHHHH
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVP-----YLVNVG---ELSML 94 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~~d~~n~d~p-----~a~d~~---~~l~~ 94 (147)
..++++|+|.|+||||||||++.|.+.+...|..+.++++|+||..-.... ..+++.+ .++|++ +++..
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~---~~~~~~~~g~~~~~~d~~~L~~~l~~ 95 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRY---RRGRESAEGYYEDAYDYTALRRLLLD 95 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHH---HcCCCChhhcCccccCHHHHHHHHHh
Confidence 346899999999999999999999999988777788899999996421111 1123333 567766 34444
Q ss_pred Hh-CC--CeeeEeccchhhh
Q psy11490 95 LL-NG--NKLEHQILNFQKL 111 (147)
Q Consensus 95 L~-~g--~~i~~p~ydf~~~ 111 (147)
++ .+ ..+..|.|++...
T Consensus 96 ~l~~~~~~~~~~~~~d~~~~ 115 (223)
T PRK06696 96 PLGPNGDRQYRTASHDLKTD 115 (223)
T ss_pred hccCCCceeEeeeeeccccC
Confidence 32 32 3578889998743
No 24
>KOG1534|consensus
Probab=99.24 E-value=2e-12 Score=103.70 Aligned_cols=64 Identities=30% Similarity=0.401 Sum_probs=58.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccCCCCccc----ccCCCCChH
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACR----DVPYLVNVG 89 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~~d~~n~----d~p~a~d~~ 89 (147)
...+.|.||+||||||+|..+.+++...|+++.+||+||+...+.++..+|+|++ |.|+.+|++
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~G 70 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLG 70 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccC
Confidence 4568899999999999999999999999999999999999999999999999998 477777665
No 25
>KOG1533|consensus
Probab=99.19 E-value=7.9e-12 Score=101.47 Aligned_cols=64 Identities=34% Similarity=0.529 Sum_probs=58.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccCCCCccc----ccCCCCChH
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACR----DVPYLVNVG 89 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~~d~~n~----d~p~a~d~~ 89 (147)
++..+|+||+||||||+|..+.+++...|+.+.+|||||+...++|+++.+++++ |.|+.++++
T Consensus 2 ~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LG 69 (290)
T KOG1533|consen 2 PFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLG 69 (290)
T ss_pred CcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCC
Confidence 5678999999999999999999999999999999999999999999999999887 477777654
No 26
>PRK07429 phosphoribulokinase; Provisional
Probab=99.19 E-value=5.6e-11 Score=100.05 Aligned_cols=99 Identities=20% Similarity=0.161 Sum_probs=68.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccCCC-CcccccCCCCChH---HHHHHHhCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVD-PACRDVPYLVNVG---ELSMLLLNG 98 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~~d-~~n~d~p~a~d~~---~~l~~L~~g 98 (147)
..++.+|+|+|+||||||||++.|.+.+... .+.++.+|.++.. ....... -...-+|++.+++ +++..|+.|
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~--~~~vi~~Dd~~~~-~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g 81 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEE--LVTVICTDDYHSY-DRKQRKELGITALDPRANNLDIMYEHLKALKTG 81 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccC--ceEEEEecccccC-CHHHHHhcCCcccCccchHHHHHHHHHHHHHCC
Confidence 3578999999999999999999999998765 3678899987632 1110000 0111245666655 678889999
Q ss_pred CeeeEeccchhhhhhh-----hcceeEEeec
Q psy11490 99 NKLEHQILNFQKLATW-----MAFGFAFMRS 124 (147)
Q Consensus 99 ~~i~~p~ydf~~~~~~-----~~~g~iive~ 124 (147)
+.|..|.||+.....- .+..++|+|+
T Consensus 82 ~~I~~P~yd~~~g~~~~~~~i~p~~iVIvEG 112 (327)
T PRK07429 82 QPILKPIYNHETGTFDPPEYIEPNKIVVVEG 112 (327)
T ss_pred CceecceeecCCCCcCCcEecCCCcEEEEec
Confidence 9999999999754311 1234666666
No 27
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.17 E-value=3.7e-11 Score=98.69 Aligned_cols=94 Identities=20% Similarity=0.148 Sum_probs=64.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccCCC-CcccccCCCCChH---HHHHHHhCCCeeeE
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVD-PACRDVPYLVNVG---ELSMLLLNGNKLEH 103 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~~d-~~n~d~p~a~d~~---~~l~~L~~g~~i~~ 103 (147)
+++|+|+||||||||++.|.+.+...+ +.++.+|.+++. ....... -....++++.+++ +++..|++++++..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~--~~vi~~Dd~~~~-~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~ 77 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL--VTVICLDDYHSL-DRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEK 77 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCc--eEEEECcccccC-CHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCccc
Confidence 589999999999999999999997664 678889987652 1111000 0122245555555 67888999999999
Q ss_pred eccchhhhhhh-----hcceeEEeec
Q psy11490 104 QILNFQKLATW-----MAFGFAFMRS 124 (147)
Q Consensus 104 p~ydf~~~~~~-----~~~g~iive~ 124 (147)
|+|++.....- .+..++|+|+
T Consensus 78 P~y~~~~~~~~~~~~i~~~~ivIvEG 103 (273)
T cd02026 78 PIYNHVTGLIDPPELIKPTKIVVIEG 103 (273)
T ss_pred ccccccCCCcCCcEEcCCCCEEEEee
Confidence 99999865311 1234666666
No 28
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.14 E-value=1.3e-10 Score=95.77 Aligned_cols=116 Identities=12% Similarity=0.122 Sum_probs=81.4
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCC--ceeecCCCCCCCCCcccCCCCcccc-cCCCCChH---HHHHH
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDN--PYVINLDPACRDVPYLVNVDPACRD-VPYLVNVG---ELSML 94 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~--v~vv~lD~~~~~l~~~~~~d~~n~d-~p~a~d~~---~~l~~ 94 (147)
...+.|++|+|+|+.|+||||+++.|...+...+.+ |.+|.+|-|.-+...-...+.+++- .|+.||.+ +.+..
T Consensus 77 ~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~ 156 (283)
T COG1072 77 NNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSD 156 (283)
T ss_pred CCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHH
Confidence 456789999999999999999999999999776555 8999999977542221222345543 89999988 77888
Q ss_pred HhCCCe-eeEeccchhhhhhhhcceeEEeeccc---cccceEeeCCC
Q psy11490 95 LLNGNK-LEHQILNFQKLATWMAFGFAFMRSSC---VQANFIKMGPN 137 (147)
Q Consensus 95 L~~g~~-i~~p~ydf~~~~~~~~~g~iive~~~---~~~~~ii~~p~ 137 (147)
+++|+. |.+|+|+....... +.+..+++..- +||||+.-++.
T Consensus 157 vK~~~~~v~aPvysh~~yD~v-pd~~~v~~~pdIlI~EG~nvLq~~~ 202 (283)
T COG1072 157 VKAGKPDVFAPVYSHLIYDPV-PDAFQVVPQPDILIVEGNNVLQDGE 202 (283)
T ss_pred HhcCCCccccccccccccccC-CCceeecCCCCEEEEechhhhcCCC
Confidence 897754 99999999655421 11222222211 57777665554
No 29
>PRK04040 adenylate kinase; Provisional
Probab=99.10 E-value=4.4e-11 Score=93.19 Aligned_cols=99 Identities=18% Similarity=0.173 Sum_probs=63.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccCCCCcccccCCCCChH--HHHHHHhCCCeeeE
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVPYLVNVG--ELSMLLLNGNKLEH 103 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~~d~~n~d~p~a~d~~--~~l~~L~~g~~i~~ 103 (147)
+++|+|+|.+||||||+++.|.+.+.. ...+++.+.+.+..-..... ..+.|.+..++.. ..+.++ ..+.|
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~---~~~~~~~g~~~~~~a~~~g~-~~~~d~~r~l~~~~~~~~~~~-a~~~i-- 74 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKE---DYKIVNFGDVMLEVAKEEGL-VEHRDEMRKLPPEEQKELQRE-AAERI-- 74 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhcc---CCeEEecchHHHHHHHHcCC-CCCHHHHhhCChhhhHHHHHH-HHHHH--
Confidence 679999999999999999999998852 26677877766442221111 3344555555443 122221 11111
Q ss_pred eccchhhhhhhhcceeEEeeccccccceEeeCCCCCCCCce
Q psy11490 104 QILNFQKLATWMAFGFAFMRSSCVQANFIKMGPNPTLPPLV 144 (147)
Q Consensus 104 p~ydf~~~~~~~~~g~iive~~~~~~~~ii~~p~~~~~~~~ 144 (147)
......+.+++|+|+. |.||.+||||+.
T Consensus 75 --------~~~~~~~~~~~~~h~~-----i~~~~g~~~~~~ 102 (188)
T PRK04040 75 --------AEMAGEGPVIVDTHAT-----IKTPAGYLPGLP 102 (188)
T ss_pred --------HHhhcCCCEEEeeeee-----eccCCCCcCCCC
Confidence 1112235689999988 999999999974
No 30
>KOG4203|consensus
Probab=98.93 E-value=8.2e-10 Score=97.13 Aligned_cols=114 Identities=15% Similarity=0.100 Sum_probs=89.3
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhc---C--CCCceeecCCCCCCCCCcc----cCCCCcccc
Q psy11490 11 GPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYD---K--QDNPYVINLDPACRDVPYL----VNVDPACRD 81 (147)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~---~--g~~v~vv~lD~~~~~l~~~----~~~d~~n~d 81 (147)
+..++.++.++...+|+++++.|.++|||||++.++...+.+ . -.++..+++|.+|+.+..+ ...+..+||
T Consensus 29 ~~~p~~~~~~~~~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~ 108 (473)
T KOG4203|consen 29 LENPSSRAAIPEGKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFD 108 (473)
T ss_pred cCCcccccccccCcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhcccccc
Confidence 445667788889999999999999999999999998888861 1 1258888999999876543 233468899
Q ss_pred cCCCCChH---HHHHHHhCCCeeeEeccchhhh-------hhhhcceeEEeec
Q psy11490 82 VPYLVNVG---ELSMLLLNGNKLEHQILNFQKL-------ATWMAFGFAFMRS 124 (147)
Q Consensus 82 ~p~a~d~~---~~l~~L~~g~~i~~p~ydf~~~-------~~~~~~g~iive~ 124 (147)
++++||.+ ..+..++.|+.+.+|.|+|... ....++|++++++
T Consensus 109 ~pda~~~~l~~~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ileg 161 (473)
T KOG4203|consen 109 HPDAFDFELLYLTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEG 161 (473)
T ss_pred CCCCcchhhHHHHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehh
Confidence 99999987 5566778899999999999643 3455667777777
No 31
>PRK06547 hypothetical protein; Provisional
Probab=98.73 E-value=2.5e-08 Score=76.79 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=34.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~ 68 (147)
...+.+|+|.|+|||||||+++.|.+.+ .+.++++|.+|..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~-----~~~~~~~d~~~~~ 52 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART-----GFQLVHLDDLYPG 52 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh-----CCCeecccceecc
Confidence 4568899999999999999999998874 2678899998743
No 32
>PRK13768 GTPase; Provisional
Probab=98.68 E-value=3.5e-08 Score=79.98 Aligned_cols=55 Identities=35% Similarity=0.529 Sum_probs=49.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccCCCCccc
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACR 80 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~~d~~n~ 80 (147)
+++++|.|++||||||++..+...+...|.++.++++|+....+++.+..+++++
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~ 56 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDY 56 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhh
Confidence 5789999999999999999999999999999999999998887777777667765
No 33
>KOG3308|consensus
Probab=98.65 E-value=5e-08 Score=77.68 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=50.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCC---CcccCCCCcccccCCCCChHHH
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDV---PYLVNVDPACRDVPYLVNVGEL 91 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l---~~~~~~d~~n~d~p~a~d~~~~ 91 (147)
+..+|||.|-+.|||||||+.|..++.. ..+|++|+||+.- +...+ ++-+||.++++|++..
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~----~~lIhqDDFyKp~~Ei~v~~~-n~~~wd~~esLdm~~f 67 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPG----CSLIHQDDFYKPENEIEVDYN-NIDNWDLLESLDMEKF 67 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccC----CeeeccccccCchhhhhcccC-CcchhcchhhhhHHHH
Confidence 4579999999999999999999999874 5699999999863 22222 4788999999998744
No 34
>COG4240 Predicted kinase [General function prediction only]
Probab=98.62 E-value=9.7e-08 Score=77.79 Aligned_cols=104 Identities=15% Similarity=0.237 Sum_probs=69.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCC-CCceeecCCCCCCCCCcccCCC-Cccc-------ccCCCCChH---
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQ-DNPYVINLDPACRDVPYLVNVD-PACR-------DVPYLVNVG--- 89 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g-~~v~vv~lD~~~~~l~~~~~~d-~~n~-------d~p~a~d~~--- 89 (147)
.+++|++++|+||-||||||++..|..+|...| .++..+++|++|.. +..+.. .+++ --|-..|..
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlt--hadrl~La~q~npllq~RGlpGTHD~tlgl 123 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLT--HADRLRLARQVNPLLQTRGLPGTHDPTLGL 123 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcc--hHHHHHHHHhcCchhcccCCCCCCchHHHH
Confidence 355699999999999999999999999999888 58999999999954 222110 1111 133334433
Q ss_pred HHHHHHhCC-CeeeEeccchhhhh---------hhhcc--eeEEeecccc
Q psy11490 90 ELSMLLLNG-NKLEHQILNFQKLA---------TWMAF--GFAFMRSSCV 127 (147)
Q Consensus 90 ~~l~~L~~g-~~i~~p~ydf~~~~---------~~~~~--g~iive~~~~ 127 (147)
..+..+.+| ..|..|.||-.+.. .|... .++|.|+-|+
T Consensus 124 nVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfv 173 (300)
T COG4240 124 NVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFV 173 (300)
T ss_pred HHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeee
Confidence 345566666 45677888875332 33333 4677777553
No 35
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.60 E-value=3.4e-08 Score=82.55 Aligned_cols=47 Identities=17% Similarity=0.383 Sum_probs=42.8
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
|...++.+|||+|++|+|||||...|...+...|.+|.||..||-..
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp 92 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP 92 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC
Confidence 35667889999999999999999999999999999999999999653
No 36
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.55 E-value=9.5e-08 Score=74.99 Aligned_cols=41 Identities=27% Similarity=0.365 Sum_probs=37.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
|.+|+++||+|+||||.+.+|+.++...+.+|.+++.|.|.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 78999999999999999999999998889999999999987
No 37
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.51 E-value=2.4e-07 Score=71.87 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=37.8
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
|+.+++.+++|+|+||||||||+++|...+...|.++.+|..+.
T Consensus 1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~ 44 (173)
T PRK10751 1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (173)
T ss_pred CCCCCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 45567889999999999999999999999998887888887644
No 38
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.47 E-value=1.4e-07 Score=66.73 Aligned_cols=33 Identities=33% Similarity=0.495 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
+|+|+|+|||||||+|+.|++.+. ..++++|.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~-----~~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG-----FPVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-----CEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC-----CeEEEecce
Confidence 689999999999999999999882 677888883
No 39
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.47 E-value=2.1e-07 Score=78.77 Aligned_cols=46 Identities=20% Similarity=0.461 Sum_probs=42.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
..+++.+|+|+|++|||||||+..|...+...|.++.++++|+...
T Consensus 52 ~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 52 HTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST 97 (332)
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc
Confidence 3567899999999999999999999999998899999999999664
No 40
>PRK08233 hypothetical protein; Provisional
Probab=98.41 E-value=2.9e-07 Score=69.22 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=31.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
++++|+|+|++||||||+++.|...+.. ..++.+|.++.
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~----~~~~~~d~~~~ 40 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKN----SKALYFDRYDF 40 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCC----CceEEECCEEc
Confidence 4689999999999999999999998853 35566677653
No 41
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.37 E-value=3.4e-07 Score=75.21 Aligned_cols=44 Identities=18% Similarity=0.399 Sum_probs=36.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
.+..+|||+|++|+|||||...|...+...|.+|.|+..||-..
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp 70 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSP 70 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGG
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCC
Confidence 46789999999999999999999999999999999999999654
No 42
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.37 E-value=6.2e-07 Score=75.32 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=39.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.++.+++++||+||||||++.+|+.++...|++|.++..|.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 4688999999999999999999999999888899999999865
No 43
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.35 E-value=7.4e-07 Score=73.38 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=38.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcC-C-CCceeecCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDK-Q-DNPYVINLDPAC 66 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~-g-~~v~vv~lD~~~ 66 (147)
..++.+++++||+|+||||++..|+.++... | .+|.++..|+|.
T Consensus 191 ~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 191 LEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 3467899999999999999999999988765 4 789999999865
No 44
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.34 E-value=4.3e-07 Score=69.39 Aligned_cols=45 Identities=22% Similarity=0.450 Sum_probs=38.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDV 69 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l 69 (147)
++.+|.++|.|||||||+++.|.+.|...|..+.++.-|.....+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL 45 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence 578999999999999999999999999999999999888766544
No 45
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.34 E-value=8.6e-07 Score=67.13 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=37.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.++.+|+|+|.+||||||+++.|...+...+..+.+++.|...
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 4567999999999999999999999998877788888888654
No 46
>PRK06762 hypothetical protein; Provisional
Probab=98.33 E-value=6.7e-07 Score=66.97 Aligned_cols=41 Identities=29% Similarity=0.435 Sum_probs=33.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~ 68 (147)
+|.+|+|+|++||||||+++.|.+.+. ..+.+++.|...+.
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~---~~~~~i~~D~~r~~ 41 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLG---RGTLLVSQDVVRRD 41 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEecHHHHHHH
Confidence 478999999999999999999998883 24777777776543
No 47
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.31 E-value=1e-06 Score=72.41 Aligned_cols=44 Identities=23% Similarity=0.377 Sum_probs=39.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
..++.+++++|++|+||||++.+|+..+...|.+|.++..|.|.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 34678999999999999999999999998888899999999864
No 48
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.31 E-value=1e-06 Score=72.87 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=41.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
...++.+|+|+|++|||||||+..+...+...|.++.++.+|+...
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~ 75 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSP 75 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 4557899999999999999999999999999999999999998763
No 49
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.30 E-value=6e-07 Score=72.38 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=35.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
.+..++.|+||||||||||+++|..+-...++.+.+-..+..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~ 67 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVG 67 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEecc
Confidence 357799999999999999999998888888778877664443
No 50
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.29 E-value=1.2e-06 Score=76.44 Aligned_cols=44 Identities=30% Similarity=0.446 Sum_probs=40.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
..+|.+|+++|++||||||++.+|+.++...|.+|.+++.|+|.
T Consensus 97 ~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 97 KGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 34588999999999999999999999999889999999999976
No 51
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.29 E-value=8.7e-07 Score=69.49 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=42.7
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCC
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~ 68 (147)
+...++.+|.++|.|||||||++.+|.+.|...|..+.++.=|.-...
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~g 65 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHG 65 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhc
Confidence 356678999999999999999999999999999999999988876544
No 52
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.29 E-value=6.7e-07 Score=67.76 Aligned_cols=45 Identities=27% Similarity=0.273 Sum_probs=37.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~ 68 (147)
.++.+|+++|++||||||+++.|...+...+..+.+++.|...+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~ 49 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREI 49 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhh
Confidence 467899999999999999999999999876666777776665443
No 53
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=98.28 E-value=1.4e-06 Score=64.91 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=30.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce-eecCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY-VINLDP 64 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~-vv~lD~ 64 (147)
++|+|+|+++||||||++.|...+..+|.++. +...|.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 47999999999999999999999999998888 555555
No 54
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.28 E-value=2.1e-07 Score=82.70 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=37.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCc
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPY 71 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~ 71 (147)
.++.+|+|.|+|||||||+++.|++.+. ..+++.|.+|+.+.+
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~-----~~~~d~g~~YR~~a~ 324 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLG-----LLYLDTGAMYRAVTW 324 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC-----CeEecCCceehHHHH
Confidence 3678999999999999999999999883 788899999987643
No 55
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.24 E-value=8.5e-07 Score=68.85 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=41.0
Q ss_pred CCCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 13 ASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 13 ~~~~~~~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.+...+......++.+|+|+|.+||||||+++.|...+...|..+.++.-|+..
T Consensus 11 v~~~~~~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 11 VTKAQREQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 333333334556889999999999999999999999887777666777666644
No 56
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.21 E-value=2.2e-06 Score=64.71 Aligned_cols=39 Identities=26% Similarity=0.473 Sum_probs=36.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
+++++|++||||||++..++..+...+.++.+++.|.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 688999999999999999999998888889999999865
No 57
>PRK14974 cell division protein FtsY; Provisional
Probab=98.20 E-value=2.3e-06 Score=72.50 Aligned_cols=44 Identities=27% Similarity=0.466 Sum_probs=39.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
..+|.+|+++|++|+||||++.+|+.++...|.+|.+++.|.|.
T Consensus 137 ~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 45689999999999999999999999999888899999999765
No 58
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.18 E-value=1.4e-06 Score=70.26 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=35.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
.+..+++|+||||||||||++.+..+..+.++.+.+-..|-.
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~ 70 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLT 70 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcC
Confidence 356799999999999999999999999888777777654443
No 59
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.17 E-value=2.5e-06 Score=59.03 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=33.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
+..++|+||+||||||+++.++..+...+..+..++.+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 45789999999999999999999998765456666666543
No 60
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.17 E-value=2.7e-06 Score=55.82 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
+|+|+|++||||||+++.|.+.+ .+.++.++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i 31 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVL 31 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEE
Confidence 47899999999999999999998 33445544
No 61
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.16 E-value=1.9e-06 Score=70.70 Aligned_cols=41 Identities=27% Similarity=0.285 Sum_probs=34.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
.+..+++|+||+|||||||+++|.+.+....+.|.+-..|.
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i 66 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI 66 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence 35689999999999999999999999998776666655443
No 62
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.15 E-value=1.5e-06 Score=62.90 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
+|+++|++|||||||++.+...+. ..+++.|....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~~~ 35 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEIRR 35 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHHHH
Confidence 589999999999999999987765 66788887554
No 63
>PRK10867 signal recognition particle protein; Provisional
Probab=98.14 E-value=3.4e-06 Score=73.73 Aligned_cols=45 Identities=24% Similarity=0.476 Sum_probs=40.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcC-CCCceeecCCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDK-QDNPYVINLDPACR 67 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~-g~~v~vv~lD~~~~ 67 (147)
...|.+|.++|++||||||++.+|+.++... |.+|.+++.|.|..
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 3468999999999999999999999999887 88999999998763
No 64
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=98.14 E-value=3.6e-06 Score=64.65 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=37.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.++++|+|.++||||||+.+|...|...|.+|.+|..+...
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~ 42 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHD 42 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence 57999999999999999999999999999999998765544
No 65
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.14 E-value=3.3e-06 Score=73.52 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=39.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
..++.+|+++|++||||||++.+|+..+...|.++.++..|++.
T Consensus 238 ~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 238 EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 34578999999999999999999999998888899999999976
No 66
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=98.13 E-value=2.7e-06 Score=64.44 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=33.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
+++|+|++||||||++.+|...+...|.+|.++..|.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~ 37 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDH 37 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 4789999999999999999999998888999987653
No 67
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.11 E-value=3.4e-06 Score=65.54 Aligned_cols=49 Identities=24% Similarity=0.324 Sum_probs=34.8
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCC
Q psy11490 20 PEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVP 70 (147)
Q Consensus 20 ~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~ 70 (147)
.+.+.+|.+++++|++||||||++..+...+. +..+.+|+.|.+...++
T Consensus 9 ~~~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p 57 (199)
T PF06414_consen 9 YPPQEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHP 57 (199)
T ss_dssp ----SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGST
T ss_pred cCcccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhcc
Confidence 34568899999999999999999999988775 44688899999876664
No 68
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.10 E-value=4.8e-06 Score=72.11 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=39.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
.++.+++++||+||||||++.+|+..+...+.+|.+++.|+|.-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 45789999999999999999999998888888999999999863
No 69
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.09 E-value=2.9e-06 Score=69.21 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=32.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
.+..++.|+||||||||||++.++.+.....+.|.+-.
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g 64 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDG 64 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 35679999999999999999999999988776666544
No 70
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.09 E-value=3.4e-06 Score=63.26 Aligned_cols=39 Identities=21% Similarity=0.483 Sum_probs=35.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
+++++|++||||||++..+...+...+.++.++..|+..
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~ 39 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSS 39 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC
Confidence 378999999999999999999999999999999999744
No 71
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.08 E-value=5.8e-06 Score=63.11 Aligned_cols=45 Identities=22% Similarity=0.359 Sum_probs=37.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
...++.+++++|.+||||||+++.|...+...+..+.+++-|...
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 446688999999999999999999999998777666777766654
No 72
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.08 E-value=3.1e-06 Score=65.96 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=31.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~ 64 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVD 64 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEEC
Confidence 3567999999999999999999999987766666543
No 73
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=98.08 E-value=5.8e-06 Score=63.02 Aligned_cols=40 Identities=28% Similarity=0.306 Sum_probs=35.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
++++|+|++||||||++.+|...+...|.++.++..|...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~ 41 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHD 41 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCCc
Confidence 5899999999999999999999999888888888766543
No 74
>PRK06217 hypothetical protein; Validated
Probab=98.06 E-value=4.5e-06 Score=63.94 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=30.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
..|+|+|.|||||||+++.|.+.+. ..++++|..+.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~-----~~~~~~D~~~~ 37 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD-----IPHLDTDDYFW 37 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC-----CcEEEcCceee
Confidence 3599999999999999999998873 55788888764
No 75
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.06 E-value=3.6e-06 Score=64.53 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=30.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 52 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLID 52 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEC
Confidence 567999999999999999999999987766666653
No 76
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.06 E-value=4.7e-06 Score=68.28 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=33.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
.+..+++|+||+|||||||.+.+..++....+.+.+....
T Consensus 28 ~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~ 67 (254)
T COG1121 28 EKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKP 67 (254)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccc
Confidence 3557999999999999999999999998877777776543
No 77
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.05 E-value=4.4e-06 Score=64.84 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=30.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 357799999999999999999999998776655554
No 78
>PRK08118 topology modulation protein; Reviewed
Probab=98.05 E-value=4.3e-06 Score=63.79 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
..|.|+|++||||||+++.|.+.+. +.++.+|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~-----~~~~~lD~l~ 36 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN-----IPVHHLDALF 36 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC-----CCceecchhh
Confidence 3689999999999999999998874 4456666543
No 79
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.04 E-value=4.3e-06 Score=65.23 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=31.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 60 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 3578999999999999999999999987766666553
No 80
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.04 E-value=3.6e-06 Score=65.34 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=30.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 61 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVN 61 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 3567999999999999999999999987766555543
No 81
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.04 E-value=3.9e-06 Score=65.40 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 62 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRF 62 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 356799999999999999999999998766555554
No 82
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.04 E-value=4.5e-06 Score=64.77 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=31.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 3567999999999999999999999987766666553
No 83
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.04 E-value=7.6e-06 Score=71.62 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=39.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.+|.+|.++|++||||||++.+|+.++...|.+|.++..|.+.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 5689999999999999999999999999888899999999864
No 84
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.03 E-value=5.8e-06 Score=62.39 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=30.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
++|+|.|+.||||||+++.|.+.+...|..+..+.
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~ 35 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTR 35 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 37899999999999999999999988887765554
No 85
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.03 E-value=4.4e-06 Score=64.95 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=30.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+++.+-
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~ 62 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIA 62 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 3567999999999999999999999987666666543
No 86
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.03 E-value=7.8e-06 Score=71.34 Aligned_cols=44 Identities=25% Similarity=0.446 Sum_probs=39.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh-cCCCCceeecCCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY-DKQDNPYVINLDPACR 67 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~-~~g~~v~vv~lD~~~~ 67 (147)
.+|.++.++|++||||||++..|+.++. ..|.+|.+++.|.|..
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 4689999999999999999999999986 5688999999998653
No 87
>PRK07261 topology modulation protein; Provisional
Probab=98.03 E-value=4.8e-06 Score=63.59 Aligned_cols=34 Identities=29% Similarity=0.496 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.|+|+|+||||||||++.|.+.+. +.++++|..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~-----~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN-----CPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC-----CCeEecCCEE
Confidence 589999999999999999987653 4466777644
No 88
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=4.5e-06 Score=64.94 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=30.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 59 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 357799999999999999999999998776656554
No 89
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.02 E-value=4.6e-06 Score=64.55 Aligned_cols=37 Identities=27% Similarity=0.282 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|..++....+.+.+-
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 59 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWD 59 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEEC
Confidence 4567999999999999999999999988777666653
No 90
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.02 E-value=6.1e-06 Score=59.69 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=34.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
+++|+|++|+||||++..++..+...+..+.+++.+...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 378999999999999999999998888888888877654
No 91
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.02 E-value=5e-06 Score=64.90 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=30.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI 61 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 356799999999999999999999998776666654
No 92
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.02 E-value=6.6e-06 Score=67.88 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=35.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
++|+|+|.+|||||||+..|...|...| +|.+|..|+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~ 40 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTE 40 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCC
Confidence 4799999999999999999999999998 89999998743
No 93
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.02 E-value=5.2e-06 Score=65.43 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 65 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVD 65 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 3577999999999999999999999998776666553
No 94
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.02 E-value=4.6e-06 Score=63.38 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=31.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDV 69 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l 69 (147)
.++|+++|+|||||||+++.|...+... ...++.|.+...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~---~~~~~~D~~~~~~ 42 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEP---WLHFGVDSFIEAL 42 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCC---ccccCccHHHHhc
Confidence 4589999999999999999998887532 3345777766544
No 95
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.02 E-value=5.5e-06 Score=61.86 Aligned_cols=40 Identities=23% Similarity=0.502 Sum_probs=33.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
+++|+|.+||||||+++.|...+...+..+.+++.|...+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 4789999999999999999999987776677777776554
No 96
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.01 E-value=4.8e-06 Score=64.51 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 59 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 356799999999999999999999998766555544
No 97
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.01 E-value=5.2e-06 Score=64.83 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|+..+....+.+.+
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 64 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLF 64 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 367799999999999999999999998766555544
No 98
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.01 E-value=4.9e-06 Score=64.73 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=29.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 58 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 356799999999999999999999998765555443
No 99
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.01 E-value=5.4e-06 Score=66.42 Aligned_cols=39 Identities=26% Similarity=0.466 Sum_probs=33.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
+|+++|.+||||||+++.|.+.+...+.++.+++.|...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr 39 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIR 39 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHH
Confidence 478999999999999999999998777778888776543
No 100
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.01 E-value=4.9e-06 Score=65.62 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLF 59 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEE
Confidence 467799999999999999999999998766555554
No 101
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.01 E-value=5.1e-06 Score=64.53 Aligned_cols=36 Identities=19% Similarity=0.364 Sum_probs=30.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+...++.+.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~ 59 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI 59 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 356799999999999999999999998766655554
No 102
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.01 E-value=4.8e-06 Score=65.80 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=29.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 59 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI 59 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 56799999999999999999999998766555554
No 103
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.00 E-value=5.3e-06 Score=64.90 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=31.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 65 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFD 65 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 3577999999999999999999999987766666553
No 104
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=4.8e-06 Score=65.17 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=30.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+++.+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 63 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLV 63 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 356799999999999999999999998766555554
No 105
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.00 E-value=5.5e-06 Score=67.59 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=28.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCc
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNP 57 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v 57 (147)
+..+++|+|+|||||||+++.|+.+.+...+++
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I 64 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKPSSGSI 64 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCceE
Confidence 577999999999999999999999987654333
No 106
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.00 E-value=5.4e-06 Score=65.65 Aligned_cols=36 Identities=11% Similarity=0.300 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEE
Confidence 356799999999999999999999988766555544
No 107
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=5.7e-06 Score=64.22 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=29.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLF 59 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 467799999999999999999999988765555544
No 108
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.99 E-value=5.8e-06 Score=65.29 Aligned_cols=36 Identities=11% Similarity=0.322 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|+..+....+.+.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 60 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 457799999999999999999999988765555544
No 109
>PRK14527 adenylate kinase; Provisional
Probab=97.99 E-value=9.3e-06 Score=62.53 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=27.0
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
|..+++.+|+|+|++||||||+++.|++.+.
T Consensus 1 ~~~~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 1 MTQTKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4556789999999999999999999987764
No 110
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.99 E-value=6e-06 Score=64.95 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 59 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILL 59 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 356799999999999999999999998776655554
No 111
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.99 E-value=5.7e-06 Score=64.75 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 59 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATV 59 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 356899999999999999999999988765555544
No 112
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.98 E-value=6e-06 Score=68.40 Aligned_cols=43 Identities=23% Similarity=0.296 Sum_probs=38.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.+..++++.||+||||||+.+.|...+.+.++.+.+...|...
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~ 71 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK 71 (293)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCcc
Confidence 3567999999999999999999999999988889988877654
No 113
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=97.98 E-value=1.2e-05 Score=68.46 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=35.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
+|.+|+|+|.+|||||||+.+|...+... .+|.++..+..
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~~~ 43 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKHGCH 43 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEeCCC
Confidence 68899999999999999999999999988 88998876543
No 114
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.98 E-value=5.5e-06 Score=63.94 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=31.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
+..+++|+|++|||||||++.|...+....+.+.+-.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 59 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNG 59 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC
Confidence 5679999999999999999999999877666665543
No 115
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.98 E-value=6.3e-06 Score=62.80 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=31.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 3567999999999999999999999988766666653
No 116
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.98 E-value=5.6e-06 Score=65.42 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 68 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIF 68 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 356799999999999999999999998765555554
No 117
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=1.3e-05 Score=69.25 Aligned_cols=43 Identities=28% Similarity=0.308 Sum_probs=37.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhc----CCCCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYD----KQDNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~----~g~~v~vv~lD~~~ 66 (147)
..|.+|+++|++|+||||.+.+|+..+.. .+.+|.++..|+|.
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R 218 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence 46789999999999999999999988763 46789999999976
No 118
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.98 E-value=1.2e-05 Score=63.00 Aligned_cols=40 Identities=33% Similarity=0.381 Sum_probs=33.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
|+.++|+|++||||||+++++.+.+... ..+.++..|.++
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~~~ 40 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQK-YQLAVITNDIYT 40 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCcCC
Confidence 5789999999999999999999988764 357777777765
No 119
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.97 E-value=7.5e-06 Score=64.27 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhh-----hcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYL-----YDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l-----~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+ ....+.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 64 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLL 64 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEE
Confidence 357799999999999999999999998 665555554
No 120
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.97 E-value=1.2e-05 Score=61.52 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=31.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
..+|+|.|+.||||||+++.|.+.+...|..+.++.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 38 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTR 38 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 578999999999999999999999998887776553
No 121
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.97 E-value=1.3e-05 Score=68.23 Aligned_cols=43 Identities=26% Similarity=0.315 Sum_probs=38.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
+++++|+|+|.+|||||||+.++...|...|.+|.+|..|...
T Consensus 203 ~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h~ 245 (366)
T PRK14489 203 GAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSHHR 245 (366)
T ss_pred CCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCcc
Confidence 3567999999999999999999999999999999999876543
No 122
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.97 E-value=6.3e-06 Score=65.40 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=29.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 356799999999999999999999998765554443
No 123
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.97 E-value=6.4e-06 Score=65.25 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|........+.+.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 60 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISV 60 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 357799999999999999999999988766555554
No 124
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.97 E-value=7.5e-06 Score=62.48 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=31.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~ 59 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLD 59 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 4677999999999999999999999988777777654
No 125
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.97 E-value=6.8e-06 Score=64.64 Aligned_cols=37 Identities=30% Similarity=0.293 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLD 60 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEEC
Confidence 4678999999999999999999999988766666553
No 126
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.96 E-value=7.4e-06 Score=63.41 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|........+++.+-
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~ 61 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFE 61 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEEC
Confidence 3678999999999999999999999987766666553
No 127
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.96 E-value=7.1e-06 Score=63.74 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=28.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
+++|+|++|||||||++.|...+....+.+.+-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 60 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDG 60 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECC
Confidence 8999999999999999999999877666665533
No 128
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.96 E-value=6.6e-06 Score=69.87 Aligned_cols=37 Identities=14% Similarity=0.278 Sum_probs=31.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
+..+++++|||||||||+++.|+.+....++.+.+-.
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g 64 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDG 64 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 4568999999999999999999999988776666543
No 129
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=1e-05 Score=70.73 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=36.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhh-hcCCCCceeecCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYL-YDKQDNPYVINLDPAC 66 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l-~~~g~~v~vv~lD~~~ 66 (147)
++.+++++|++||||||++.+|+..+ ...|.+|.++..|.+.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 56799999999999999999999755 5667889999999865
No 130
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.95 E-value=2.9e-06 Score=61.19 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=31.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
+..+++|+|++|||||||++.|........+.+.+-..+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~ 48 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKD 48 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEE
T ss_pred CCCEEEEEccCCCccccceeeeccccccccccccccccc
Confidence 456899999999999999999999998765556554433
No 131
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.95 E-value=7.9e-06 Score=63.72 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=29.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+++|+|++|||||||++.|...+....+++.+-
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 57 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLN 57 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 8999999999999999999999987766666553
No 132
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.95 E-value=7.6e-06 Score=64.81 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=30.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 44 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL 44 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 46799999999999999999999998876666654
No 133
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.95 E-value=7.7e-06 Score=64.25 Aligned_cols=36 Identities=14% Similarity=0.274 Sum_probs=30.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|+..+....+.+.+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~ 69 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSL 69 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEE
Confidence 367899999999999999999999998766555543
No 134
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.95 E-value=9.7e-06 Score=61.49 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=30.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~ 61 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRL 61 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEE
Confidence 56799999999999999999999998876666654
No 135
>KOG2702|consensus
Probab=97.95 E-value=2.2e-05 Score=64.42 Aligned_cols=108 Identities=10% Similarity=0.058 Sum_probs=64.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhc-------CCCCc-eeecCCCCCCCCCc-----ccCCCCcc-cccCCCCChH
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYD-------KQDNP-YVINLDPACRDVPY-----LVNVDPAC-RDVPYLVNVG 89 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~-------~g~~v-~vv~lD~~~~~l~~-----~~~~d~~n-~d~p~a~d~~ 89 (147)
....++|++|++|+||||.|..+...-.. ....+ .++.||-|.-.... .+.. .+- .-.|-.||-+
T Consensus 117 n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~-AharRGapwTFD~~ 195 (323)
T KOG2702|consen 117 NNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQT-AHARRGAPWTFDSN 195 (323)
T ss_pred cchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHH-HHhhcCCCcccCHH
Confidence 34579999999999999999988773322 12234 34789987633110 0000 011 1256667766
Q ss_pred ---HHHHHHhC--CCeeeEeccchhhhhhhhcceeEEeeccc----cccceEee
Q psy11490 90 ---ELSMLLLN--GNKLEHQILNFQKLATWMAFGFAFMRSSC----VQANFIKM 134 (147)
Q Consensus 90 ---~~l~~L~~--g~~i~~p~ydf~~~~~~~~~g~iive~~~----~~~~~ii~ 134 (147)
+.|..|+. -..|.+|-||+.-. .+...-+.|+..+ +|||||.-
T Consensus 196 lfl~l~k~lkk~t~~~iyvPsFdHa~g--DPv~DdicVs~~~rIvI~EGnYlLl 247 (323)
T KOG2702|consen 196 LFLQLCKILKKTTIPDIYVPSFDHALG--DPVPDDICVSKFTRIVILEGNYLLL 247 (323)
T ss_pred HHHHHHHHHhhcCCCceeccccccccC--CCCccceeecccceEEEEeccEEEe
Confidence 55666663 36788898887432 2334444444433 78999863
No 136
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.95 E-value=8.3e-06 Score=63.91 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 67 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV 67 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 367799999999999999999999998776666655
No 137
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.95 E-value=8.7e-06 Score=64.19 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 66 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLF 66 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEE
Confidence 356799999999999999999999988766555544
No 138
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.94 E-value=8.4e-06 Score=64.79 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 356789999999999999999999998776665554
No 139
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.94 E-value=8.5e-06 Score=63.52 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=30.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|...+....+++.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 64 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATV 64 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 56799999999999999999999998776656554
No 140
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.94 E-value=8.1e-06 Score=63.41 Aligned_cols=36 Identities=14% Similarity=0.325 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~ 57 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLI 57 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 467799999999999999999999998766555544
No 141
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.94 E-value=8e-06 Score=65.87 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 356799999999999999999999998766555554
No 142
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.94 E-value=8.5e-06 Score=61.80 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~ 59 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKV 59 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 356799999999999999999999988766656554
No 143
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.94 E-value=7e-06 Score=65.37 Aligned_cols=35 Identities=14% Similarity=0.344 Sum_probs=29.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
...+++|+|++|||||||++.|...+....+.+.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 62 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 56799999999999999999999998766555544
No 144
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.94 E-value=8.7e-06 Score=63.20 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=30.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~ 60 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 56799999999999999999999998877666654
No 145
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.93 E-value=9.2e-06 Score=63.97 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|+..+....+.+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILI 61 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEE
Confidence 356799999999999999999999998776655554
No 146
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.93 E-value=9.9e-06 Score=66.24 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=35.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
+..+.+|+|||||||||+++.+..++++..+.+.+...|-
T Consensus 33 ~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i 72 (263)
T COG1127 33 RGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDI 72 (263)
T ss_pred CCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcch
Confidence 5779999999999999999999999999888888877663
No 147
>PLN02200 adenylate kinase family protein
Probab=97.93 E-value=1.2e-05 Score=64.65 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=26.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.++.|.+|+|+|++||||||+|+.|++.+.
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 366789999999999999999999988763
No 148
>PRK10908 cell division protein FtsE; Provisional
Probab=97.93 E-value=8.1e-06 Score=63.99 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=30.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+++.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 61 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 467899999999999999999999998766555544
No 149
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.93 E-value=8.8e-06 Score=64.28 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLV 61 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 367799999999999999999999998766555544
No 150
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.92 E-value=9e-06 Score=64.47 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 63 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIID 63 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 4678999999999999999999999987665555543
No 151
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.92 E-value=1e-05 Score=63.19 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=30.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|........+.+.+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 63 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLL 63 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEE
Confidence 367799999999999999999999998766555544
No 152
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.92 E-value=9.6e-06 Score=63.67 Aligned_cols=35 Identities=14% Similarity=0.353 Sum_probs=29.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
...+++|+|++|||||||++.|...+....+.+.+
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 56789999999999999999999998776555544
No 153
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.92 E-value=1e-05 Score=61.18 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=29.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
.+..+++|+|++|||||||++.|...+....+.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 59 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG 59 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 35779999999999999999999999877655444
No 154
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.92 E-value=1e-05 Score=62.35 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=30.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
+..+++|+|++|||||||++.|+..+....+.+.+-
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYK 60 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 567999999999999999999999987766666553
No 155
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.92 E-value=9.5e-06 Score=65.16 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 67 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRM 67 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC
Confidence 36779999999999999999999999877666665544
No 156
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.92 E-value=1.1e-05 Score=60.21 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 29 LIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 29 I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
|+++|++||||||+++.|.+.+. ..+++.|.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~-----~~~v~~D~~~ 33 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG-----AKFIEGDDLH 33 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC-----CeEEeCcccc
Confidence 57899999999999999998873 5567888865
No 157
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.91 E-value=1e-05 Score=62.72 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=30.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF 59 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 367899999999999999999999988766555554
No 158
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.91 E-value=1.8e-05 Score=60.62 Aligned_cols=35 Identities=14% Similarity=0.366 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
++.+|+|.|+.||||||+++.|.+.+...|..+.+
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~ 36 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVF 36 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeE
Confidence 35799999999999999999999999877644443
No 159
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.91 E-value=9.8e-06 Score=57.01 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q psy11490 29 LIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 29 I~I~G~SGSGKTTl~~~L~~~l 50 (147)
|+|.|++||||||+++.|.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997
No 160
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.91 E-value=1.1e-05 Score=61.38 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=30.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|........+++.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~ 61 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITL 61 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEE
Confidence 56799999999999999999999998776666554
No 161
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.91 E-value=1.4e-05 Score=69.47 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=35.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhh--cCCCCceeecCCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLY--DKQDNPYVINLDPAC 66 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~--~~g~~v~vv~lD~~~ 66 (147)
..+++++||+|+||||++.+|+..+. ..+.+|.+++.|++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 46999999999999999999998876 456789999999964
No 162
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.91 E-value=9.6e-06 Score=63.28 Aligned_cols=36 Identities=14% Similarity=0.316 Sum_probs=31.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 58 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVN 58 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 678999999999999999999999988766666553
No 163
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.91 E-value=9.7e-06 Score=61.18 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|........+.+.+-
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~ 60 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVD 60 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 3567999999999999999999999988777666653
No 164
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.91 E-value=1.1e-05 Score=62.93 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=30.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|........+.+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 61 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKL 61 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 467899999999999999999999988766556554
No 165
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.91 E-value=1e-05 Score=63.92 Aligned_cols=36 Identities=14% Similarity=0.294 Sum_probs=30.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 62 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILL 62 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEE
Confidence 467899999999999999999999998776655554
No 166
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.90 E-value=1e-05 Score=64.46 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=29.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV 62 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 356799999999999999999999988765555543
No 167
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.90 E-value=1e-05 Score=63.86 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|........+.+.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 58 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTL 58 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 357799999999999999999999998776655544
No 168
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.90 E-value=1.2e-05 Score=60.63 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
..+|+|+|++||||||+|+.|.+.+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999776
No 169
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.90 E-value=1.1e-05 Score=62.23 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRW 59 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEE
Confidence 357799999999999999999999998766555544
No 170
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.90 E-value=1.1e-05 Score=64.38 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...++...+.+.+-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 65 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLR 65 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEEC
Confidence 3678999999999999999999999987766555543
No 171
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.90 E-value=1.1e-05 Score=61.65 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=31.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
+..+++|+|++|||||||++.|...+....+.+.+-.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 61 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDG 61 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 5678999999999999999999999887766666543
No 172
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.89 E-value=1e-05 Score=64.17 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|+.......+.+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 61 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 356799999999999999999999998766555554
No 173
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.89 E-value=1.3e-05 Score=60.75 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~ 62 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILID 62 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEEC
Confidence 3577999999999999999999999988776666543
No 174
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.89 E-value=8.7e-06 Score=67.18 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-.
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g 54 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAG 54 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 35679999999999999999999999877666665543
No 175
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.89 E-value=1.3e-05 Score=60.58 Aligned_cols=27 Identities=22% Similarity=0.360 Sum_probs=23.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDK 53 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~ 53 (147)
.+++|+|+|||||||+++.|...+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~ 28 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGD 28 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcC
Confidence 478999999999999999998887543
No 176
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.89 E-value=9e-06 Score=65.69 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=29.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 70 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 356799999999999999999999988765555544
No 177
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.89 E-value=1.1e-05 Score=63.99 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 61 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVD 61 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 3678999999999999999999999987665555543
No 178
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.89 E-value=1.3e-05 Score=61.88 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=24.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+..+|+|+|+|||||||+++.|.+.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 567999999999999999999999875
No 179
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.88 E-value=1.1e-05 Score=63.55 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh---cCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY---DKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~---~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+. ...+.+.+-
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~ 70 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFN 70 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEEC
Confidence 4678999999999999999999999987 555555543
No 180
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.88 E-value=1.2e-05 Score=63.35 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~ 60 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEE
Confidence 356799999999999999999999998766555544
No 181
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.88 E-value=1.2e-05 Score=62.99 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=30.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 74 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLD 74 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEEC
Confidence 3577999999999999999999999987665555543
No 182
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.88 E-value=1.3e-05 Score=62.62 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=29.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|........+.+.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 63 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILI 63 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEE
Confidence 356799999999999999999999988766555443
No 183
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.88 E-value=1.3e-05 Score=60.66 Aligned_cols=33 Identities=24% Similarity=0.230 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
+|+|+|++||||||+|+.|++.+. +..+++++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~-----~~~is~~d~ 33 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG-----FTHLSAGDL 33 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC-----CeEEECChH
Confidence 488999999999999999988773 556666543
No 184
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.88 E-value=1.2e-05 Score=64.75 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=28.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
+..+++|+|++|||||||++.|...+....+.+.
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~ 57 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIE 57 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEE
Confidence 5679999999999999999999999876655443
No 185
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.88 E-value=1.4e-05 Score=67.98 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=36.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhh-cCCCCceeecCCCCCCC
Q psy11490 29 LIVLGMAGSGKTSFVKKFSSYLY-DKQDNPYVINLDPACRD 68 (147)
Q Consensus 29 I~I~G~SGSGKTTl~~~L~~~l~-~~g~~v~vv~lD~~~~~ 68 (147)
+.++|.+||||||+++.|.+.+. ..|..+.+++.|++...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~ 42 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPE 42 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccc
Confidence 57999999999999999999987 68999999999998843
No 186
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.88 E-value=1.1e-05 Score=63.80 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=31.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+++.+-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 65 (237)
T PRK11614 29 NQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFD 65 (237)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEEC
Confidence 4678999999999999999999999987766665543
No 187
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.88 E-value=2.3e-05 Score=69.47 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=35.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh-cCC-CCceeecCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY-DKQ-DNPYVINLDPAC 66 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~-~~g-~~v~vv~lD~~~ 66 (147)
++.+++++||+|+||||++.+|+..+. ..| .+|.++..|.|.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR 298 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence 467999999999999999999998884 344 379999999864
No 188
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.88 E-value=1.2e-05 Score=64.30 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=30.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATY 62 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 356799999999999999999999998776555555
No 189
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.88 E-value=1.3e-05 Score=63.16 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 39 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKV 39 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 56799999999999999999999988766555544
No 190
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.88 E-value=1.5e-05 Score=62.68 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
+..+++|+|++|||||||++.|+..+....+.+.
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~ 45 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFI 45 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEE
Confidence 4579999999999999999999999877666664
No 191
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.88 E-value=1.1e-05 Score=59.80 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
....+++|+|++|||||||++.|...+....+.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~ 59 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEE
Confidence 456799999999999999999999998776655544
No 192
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=1.1e-05 Score=65.42 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=30.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW 60 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEE
Confidence 56799999999999999999999998776665554
No 193
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.87 E-value=1.6e-05 Score=58.36 Aligned_cols=35 Identities=29% Similarity=0.450 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
+++++|++||||||+++.|.+.+ ...+++.|....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~~~ 35 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLHP 35 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCccccc
Confidence 47899999999999999998875 256778888765
No 194
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.87 E-value=1.2e-05 Score=64.36 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|+||||||||++.|...+....+.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQV 59 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 356799999999999999999999998776555544
No 195
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.87 E-value=1.1e-05 Score=65.32 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=28.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
+..+++|+|++|||||||++.|...+....+.+.
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~ 70 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL 70 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence 5679999999999999999999999876555443
No 196
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.87 E-value=1.8e-05 Score=64.49 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=31.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~ 68 (147)
+.+|+++|++||||||+++.|.+.+. ...+++.|.+.+.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r~~ 40 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLRQS 40 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHHHH
Confidence 57899999999999999999998874 3677787776543
No 197
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.87 E-value=1.4e-05 Score=63.39 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g 63 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGG 63 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC
Confidence 35679999999999999999999999877666665543
No 198
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.87 E-value=1.8e-05 Score=58.76 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=29.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
++..|+++|++||||||+++.|++.+. ..+++.|..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~-----~~~~d~d~~ 38 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG-----YDFIDTDHL 38 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEChHH
Confidence 466999999999999999999999883 445555543
No 199
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.87 E-value=1.4e-05 Score=61.86 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=29.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
.+..+++|+|++|||||||++.|........+.+.
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~ 63 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVS 63 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEE
Confidence 36779999999999999999999999877655543
No 200
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.86 E-value=1.3e-05 Score=64.85 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=30.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 70 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSF 70 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 467799999999999999999999998776655544
No 201
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.86 E-value=2.4e-05 Score=54.74 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=32.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
...+.|.|++|+||||+++.+...+...+..+..++.....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 45789999999999999999999987555566666555433
No 202
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.86 E-value=1.2e-05 Score=65.17 Aligned_cols=35 Identities=14% Similarity=0.441 Sum_probs=29.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i 83 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLI 83 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 56799999999999999999999998766555544
No 203
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.86 E-value=1.3e-05 Score=62.71 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=29.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 70 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQI 70 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEE
Confidence 56789999999999999999999988766555544
No 204
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.86 E-value=1.4e-05 Score=64.93 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~ 68 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKI 68 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 367799999999999999999999998765555544
No 205
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.86 E-value=1.3e-05 Score=64.88 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 68 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFY 68 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 467799999999999999999999998766555554
No 206
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.86 E-value=1.3e-05 Score=65.60 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=30.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 70 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV 70 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 356799999999999999999999998776556554
No 207
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.85 E-value=1.6e-05 Score=61.20 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=28.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
....++|+|++||||||+++.|..++....+.+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ 57 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIIT 57 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEE
Confidence 4568999999999999999999999876554333
No 208
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.85 E-value=1.3e-05 Score=65.14 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=28.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
+..+++|+|++|||||||++.|...+....+.+.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 65 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFVRLASGKIS 65 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 5679999999999999999999998876544443
No 209
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.85 E-value=1.4e-05 Score=61.93 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLN 60 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 3678999999999999999999999987766666543
No 210
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.85 E-value=1.2e-05 Score=65.32 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~ 66 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRV 66 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 356799999999999999999999988766555544
No 211
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.85 E-value=1.2e-05 Score=68.73 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=32.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
+..++.+.|||||||||+++.|+.+-...++.+.+-..|
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~ 68 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGED 68 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence 457899999999999999999999998887776664433
No 212
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.85 E-value=1.2e-05 Score=64.08 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=30.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcC-----CCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDK-----QDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~-----g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+... .+++.+-
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~ 66 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFD 66 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEEC
Confidence 467799999999999999999999998764 5556553
No 213
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.85 E-value=1.4e-05 Score=64.78 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 66 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILF 66 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 56789999999999999999999998765555544
No 214
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.85 E-value=1.4e-05 Score=64.44 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~ 61 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 356799999999999999999999998765555544
No 215
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.84 E-value=1.7e-05 Score=63.06 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=34.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
...++.|+||||||||||.+.++.+..+..+.+.+-..|.
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~ 63 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDH 63 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeec
Confidence 4678999999999999999999999988877777766554
No 216
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.84 E-value=1.4e-05 Score=63.22 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=25.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
+..+++|+|++|||||||++.|...+..
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5679999999999999999999999875
No 217
>PRK03839 putative kinase; Provisional
Probab=97.84 E-value=1.6e-05 Score=60.37 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.|+|+|++||||||+++.|++.+. ..++++|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~-----~~~id~d~~~ 35 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG-----YEYVDLTEFA 35 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcEEehhhhh
Confidence 589999999999999999999874 5567777654
No 218
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.84 E-value=1.5e-05 Score=64.50 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=30.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 37 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~ 72 (267)
T PRK15112 37 REGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLI 72 (267)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 356799999999999999999999999776655554
No 219
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=97.83 E-value=2.6e-05 Score=68.39 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=35.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
++++|+|.+|||||||+.+|...|...|.+|.+|..|...
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~hH~ 41 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHSHHD 41 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 4899999999999999999999999999999998866533
No 220
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.83 E-value=1.3e-05 Score=66.28 Aligned_cols=37 Identities=19% Similarity=0.415 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~ 64 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVL 64 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 3567999999999999999999999987766566553
No 221
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.83 E-value=1.6e-05 Score=62.41 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=30.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIF 59 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 467799999999999999999999988766555544
No 222
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.83 E-value=1.7e-05 Score=61.98 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=30.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|+..+....+.+.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 60 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHW 60 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 356799999999999999999999998766666655
No 223
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.83 E-value=2.2e-05 Score=59.25 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=23.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
.+|+|+||+||||||+++.|.+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 57999999999999999999987654
No 224
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.83 E-value=2.3e-05 Score=65.71 Aligned_cols=41 Identities=27% Similarity=0.476 Sum_probs=33.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC--CCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP--ACRDVP 70 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~--~~~~l~ 70 (147)
++.+|+|+||+||||||++..|++.+. ..+|+.|. .|+.++
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~-----~~iis~Ds~Qvy~~l~ 45 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLN-----GEIISADSMQVYRGMD 45 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCC-----CcEEeccccceeeccc
Confidence 457999999999999999999998763 56899999 455544
No 225
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=97.83 E-value=2.8e-05 Score=56.22 Aligned_cols=36 Identities=31% Similarity=0.557 Sum_probs=34.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 29 LIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 29 I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
|++.|.+|+||||++..+.+.+...+.++.++..|+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 789999999999999999999988888999999998
No 226
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.83 E-value=1.5e-05 Score=65.26 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~ 67 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVD 67 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 3567999999999999999999999988766666553
No 227
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.83 E-value=2.7e-05 Score=60.67 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDK 53 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~ 53 (147)
+|+|+||+||||||+++.+..++...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~ 28 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKN 28 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 68999999999999999999888754
No 228
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.83 E-value=1.3e-05 Score=70.47 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=30.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+...++|+|+|||||||+++.|.++.....+++.+
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 394 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTL 394 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 67789999999999999999999999876655544
No 229
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.83 E-value=2.3e-05 Score=62.43 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=33.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
+..++.++||||||||||++.|+...+...+.+.+-..|-
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl 66 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDL 66 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeec
Confidence 5678999999999999999999999888766666655554
No 230
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.83 E-value=1.5e-05 Score=64.30 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=27.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQD 55 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~ 55 (147)
.+..+++|+|++|||||||++.|+..+....+
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G 59 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG 59 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 36779999999999999999999998866544
No 231
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.83 E-value=1.9e-05 Score=65.41 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=36.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.+..+++++|||||||||+++.+.+++....+.+.+-+.|...
T Consensus 25 ~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~ 67 (309)
T COG1125 25 EEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISD 67 (309)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeeccc
Confidence 4567899999999999999999999999888788876655443
No 232
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.83 E-value=2.3e-05 Score=56.42 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFS 47 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~ 47 (147)
...+++|.|+|||||||+++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 35789999999999999999875
No 233
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.83 E-value=1.9e-05 Score=61.23 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=29.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|........+.+.+
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 67 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEI 67 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEE
Confidence 356799999999999999999999987665444443
No 234
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.82 E-value=2.8e-05 Score=61.12 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=29.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
+.+++|+|+|++||||||+++.|... | +.+++.|...+
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~~----g--~~v~d~D~i~~ 40 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAEM----G--CELFEADRVAK 40 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHC----C--CeEEeccHHHH
Confidence 45789999999999999999998763 3 56677674443
No 235
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.82 E-value=1.5e-05 Score=63.05 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=31.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
+..+++|+|++|||||||++.|........+++.+-.
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g 83 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG 83 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 5678999999999999999999998877666665533
No 236
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.82 E-value=1.6e-05 Score=63.22 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|+..+....+.+.+
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~ 80 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 356799999999999999999999988766555554
No 237
>KOG2878|consensus
Probab=97.81 E-value=1.8e-05 Score=63.79 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=62.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcC---CCCceeecCCCCCCCCCcccCCC---------Cccc-ccCCCCChH-
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDK---QDNPYVINLDPACRDVPYLVNVD---------PACR-DVPYLVNVG- 89 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~---g~~v~vv~lD~~~~~l~~~~~~d---------~~n~-d~p~a~d~~- 89 (147)
..|.+|++.||.||||||++-+|...+... ..++..+++|+||.. .+.+.. ...+ --+-..|+.
T Consensus 29 ~~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLT--he~Q~eL~k~npnN~Llq~RGlaGtHD~kl 106 (282)
T KOG2878|consen 29 DVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLT--HEGQAELRKKNPNNALLQYRGLAGTHDLKL 106 (282)
T ss_pred cCcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeee--chhHHHHHhhCCCChhhccCCCCCcccHHH
Confidence 349999999999999999999998777543 347889999999943 221110 1111 122223433
Q ss_pred --HHHHHHh----CCCeeeEeccchhhhh---------hhhcc---eeEEeec
Q psy11490 90 --ELSMLLL----NGNKLEHQILNFQKLA---------TWMAF---GFAFMRS 124 (147)
Q Consensus 90 --~~l~~L~----~g~~i~~p~ydf~~~~---------~~~~~---g~iive~ 124 (147)
+.+..+. .+.++.+|.||-.+.. .|... .++|.|+
T Consensus 107 l~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEG 159 (282)
T KOG2878|consen 107 LVEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEG 159 (282)
T ss_pred HHHHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEec
Confidence 3333343 3467999999976543 34433 5666666
No 238
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=97.81 E-value=3.9e-05 Score=69.49 Aligned_cols=42 Identities=19% Similarity=0.149 Sum_probs=37.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
+.++++|+|.+|||||||+.+|...|...|.+|.+|..|...
T Consensus 9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~~h~ 50 (597)
T PRK14491 9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHAHHN 50 (597)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCcC
Confidence 367999999999999999999999999999999999875533
No 239
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.81 E-value=2e-05 Score=68.18 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=44.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVP 70 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~ 70 (147)
...+.++.|+||..||||||+..|++.+..+|+++.+|..|+.+.++.
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~ 117 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIG 117 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccC
Confidence 556789999999999999999999999999999999999999998743
No 240
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.81 E-value=2.4e-05 Score=60.65 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=27.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQD 55 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~ 55 (147)
.+..|+|+|++|+||||++.++...|...|.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~ 34 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY 34 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCc
Confidence 4678999999999999999999999988753
No 241
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.81 E-value=2.3e-05 Score=63.64 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=33.9
Q ss_pred CCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 18 HGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 18 ~~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
++...-.+..+++|+|++|||||||++.|..++....+.+.
T Consensus 18 ~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~ 58 (255)
T cd03236 18 HRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFD 58 (255)
T ss_pred hcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEe
Confidence 44444567789999999999999999999999987766664
No 242
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.81 E-value=1.4e-05 Score=66.32 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=33.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
+..+++|+||+|||||||++.|...+....+.+.+...|
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~ 70 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEP 70 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEe
Confidence 567999999999999999999999998776677665544
No 243
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.81 E-value=1.3e-05 Score=67.62 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=30.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
+..+++|+|+||||||||++.|...+....+.+.+-
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~ 65 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVD 65 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC
Confidence 567999999999999999999999987766666554
No 244
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.81 E-value=1.5e-05 Score=65.01 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=30.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|..++....+.+.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 66 (279)
T PRK13650 31 KQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIII 66 (279)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 367899999999999999999999998776655544
No 245
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.81 E-value=1.7e-05 Score=63.59 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=30.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 64 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVV 64 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 367899999999999999999999998766555544
No 246
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.81 E-value=1.7e-05 Score=64.56 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 61 (275)
T PRK13639 26 EKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLI 61 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEE
Confidence 367799999999999999999999988776555544
No 247
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.80 E-value=1.8e-05 Score=61.38 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.|.|.|+|||||||+|+.|++.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999853
No 248
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=1.8e-05 Score=63.40 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (255)
T PRK11231 26 PTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFL 61 (255)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEE
Confidence 356799999999999999999999988766555544
No 249
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=1.8e-05 Score=64.51 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 64 (274)
T PRK13647 29 PEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKV 64 (274)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEE
Confidence 356899999999999999999999998765555544
No 250
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.80 E-value=1.8e-05 Score=62.50 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=28.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhh--hcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYL--YDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l--~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+ ....+.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~ 61 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEE
Confidence 356799999999999999999999984 344444544
No 251
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.80 E-value=2.5e-05 Score=61.53 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=32.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
-.....++|+||||||||||.+.++.+.....+.+.+-..|
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~ 66 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGED 66 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcc
Confidence 34678999999999999999999999988766555554433
No 252
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.79 E-value=1.8e-05 Score=64.90 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=31.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~ 67 (287)
T PRK13637 31 EDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIID 67 (287)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEC
Confidence 3677999999999999999999999988766655553
No 253
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.79 E-value=2e-05 Score=62.54 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+++.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i 59 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRL 59 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 356799999999999999999999988766555554
No 254
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.79 E-value=1.6e-05 Score=67.44 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=31.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
.+..+++|+|+||||||||++.|..+.....+.+.+-.
T Consensus 29 ~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G 66 (343)
T TIGR02314 29 PAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDG 66 (343)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 35679999999999999999999999887766666543
No 255
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.78 E-value=1.9e-05 Score=61.09 Aligned_cols=38 Identities=11% Similarity=0.225 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhh--hcCCCCceeec
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYL--YDKQDNPYVIN 61 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l--~~~g~~v~vv~ 61 (147)
.+..+++|+|++|||||||++.|+..+ ....+.+.+-+
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g 72 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLING 72 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECC
Confidence 367899999999999999999999998 76666665543
No 256
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.78 E-value=2.1e-05 Score=64.27 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=30.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|+..+....+++.+
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~ 66 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITV 66 (279)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence 367799999999999999999999998876665554
No 257
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.78 E-value=2e-05 Score=60.51 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=22.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
..+++|+|||||||||+++.|...+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35899999999999999999977654
No 258
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.78 E-value=2.1e-05 Score=65.40 Aligned_cols=37 Identities=24% Similarity=0.455 Sum_probs=32.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 31 ~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~ 67 (305)
T PRK13651 31 NQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWI 67 (305)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEe
Confidence 3577999999999999999999999998777777664
No 259
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.78 E-value=1.7e-05 Score=61.76 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh---cCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY---DKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~---~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+. ...+.+.+-
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~ 70 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYN 70 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEEC
Confidence 3567999999999999999999999987 445555543
No 260
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.78 E-value=2.2e-05 Score=62.71 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=25.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
.+..+++|+|++|||||||++.|...+..
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 56 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLLEL 56 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCc
Confidence 35679999999999999999999998864
No 261
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.78 E-value=2.1e-05 Score=64.61 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=30.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 66 (288)
T PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVG 66 (288)
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEEC
Confidence 567999999999999999999999987766655553
No 262
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.77 E-value=2.1e-05 Score=64.07 Aligned_cols=36 Identities=19% Similarity=0.442 Sum_probs=30.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 28 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~ 63 (277)
T PRK13652 28 PRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLI 63 (277)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 467899999999999999999999998776655554
No 263
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.77 E-value=3.2e-05 Score=60.61 Aligned_cols=29 Identities=21% Similarity=0.482 Sum_probs=25.2
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
+...++.+|+|+|||||||||+++.|.+.
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45668899999999999999999998754
No 264
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.77 E-value=2.2e-05 Score=62.93 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=30.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 60 (256)
T TIGR03873 25 PPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL 60 (256)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 357899999999999999999999998766555544
No 265
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.77 E-value=2.5e-05 Score=63.29 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=35.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
....+.+|+||+|+|||||++.|...+...++.+.+.+.+..
T Consensus 25 ~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~ 66 (259)
T COG4559 25 RPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLN 66 (259)
T ss_pred cCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChh
Confidence 356799999999999999999999999987777777665543
No 266
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.77 E-value=2.1e-05 Score=63.60 Aligned_cols=36 Identities=14% Similarity=0.376 Sum_probs=30.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 66 (265)
T PRK10253 31 PDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWL 66 (265)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEE
Confidence 356799999999999999999999998766555544
No 267
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.77 E-value=2e-05 Score=66.62 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=29.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|+||||||||++.|+..+....+.+.+
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~ 57 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVL 57 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 56799999999999999999999998766555554
No 268
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.76 E-value=2.4e-05 Score=62.79 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=26.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
.+..+++|+|++|||||||++.|...+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 55 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGILPA 55 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35679999999999999999999998875
No 269
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.76 E-value=1.9e-05 Score=66.32 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=29.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|+||||||||++.|..++....+.+.+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~ 74 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYY 74 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEE
Confidence 356799999999999999999999998765544444
No 270
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.76 E-value=2.2e-05 Score=64.40 Aligned_cols=38 Identities=18% Similarity=0.390 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
.+..+++|+|++|||||||++.|+..+....+.+.+-.
T Consensus 31 ~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g 68 (287)
T PRK13641 31 EEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAG 68 (287)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 35679999999999999999999999887665555533
No 271
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=97.76 E-value=3.4e-05 Score=61.71 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=36.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
++|.|+|..|+||||++..|+..|...|.+|.+|.+|+...
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n 42 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKAD 42 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence 46777899999999999999999999999999999999653
No 272
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.76 E-value=3.6e-05 Score=61.00 Aligned_cols=44 Identities=34% Similarity=0.368 Sum_probs=38.7
Q ss_pred CCCC-EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 23 KSKP-ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 23 ~~~~-~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
++++ +.|+|.||+|||||+|..++.+.|... .++.+|.-|-+.+
T Consensus 9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~ 53 (202)
T COG0378 9 KNRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTK 53 (202)
T ss_pred hcCceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeech
Confidence 3456 899999999999999999999999876 7899999998873
No 273
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.76 E-value=4.2e-05 Score=66.90 Aligned_cols=51 Identities=25% Similarity=0.460 Sum_probs=44.3
Q ss_pred CCCCCC-CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 17 DHGPEF-KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 17 ~~~~~~-~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
++.... .+.|.+|..+|--||||||.|.+|+.++...+.++.+++.|.|.-
T Consensus 90 ~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp 141 (451)
T COG0541 90 NSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP 141 (451)
T ss_pred CcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence 344443 457899999999999999999999999999999999999999773
No 274
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.75 E-value=2.1e-05 Score=65.79 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|..++....+.|.+-
T Consensus 50 ~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~ 86 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVG 86 (320)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEC
Confidence 3577999999999999999999999988776666654
No 275
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.75 E-value=2.7e-05 Score=62.19 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=24.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|++|||||||++.|.....
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3567999999999999999999998753
No 276
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.75 E-value=2.4e-05 Score=63.43 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~ 71 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSW 71 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 356799999999999999999999988766555544
No 277
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.75 E-value=2.6e-05 Score=69.80 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=34.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
.+..+++|+|.|||||||+++.|..++.+.++.+.+...|
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~ 354 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD 354 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc
Confidence 3677999999999999999999999998887777776655
No 278
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=4.5e-05 Score=65.62 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=35.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh-cCC-CCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY-DKQ-DNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~-~~g-~~v~vv~lD~~~ 66 (147)
.+..+++++||+|+||||++.+|...+. ..| .+|.++..|.|.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 4567999999999999999999998764 334 479999999974
No 279
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.75 E-value=2.6e-05 Score=63.54 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=30.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|+..+....+.+.+-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 62 (274)
T PRK13644 26 KKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVS 62 (274)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 3577999999999999999999999987765555443
No 280
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.75 E-value=3.9e-05 Score=61.93 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=33.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINL 62 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~l 62 (147)
++++|+|++||||||++..|...|...|.+|.++..
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 479999999999999999999999999999999954
No 281
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.75 E-value=3.8e-05 Score=62.67 Aligned_cols=52 Identities=27% Similarity=0.377 Sum_probs=38.7
Q ss_pred CcccccccCCCCCCCCCCCCC---------------------CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 1 MAEEKVSDNSGPASSGDHGPE---------------------FKSKPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
||-|.....+||+.+....++ .-.+..+++|+|++|||||||++.|...+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p 73 (276)
T PRK14271 1 MACERLGGQSGAADVDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDK 73 (276)
T ss_pred CcccccCCCCCCccccccCcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCc
Confidence 677788888888854422222 1125668999999999999999999998763
No 282
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.75 E-value=4.3e-05 Score=61.42 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=31.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
-+.|..|+|+|++||||||+++.|++.+. +..+++|...+
T Consensus 3 ~~~~mrIvl~G~PGsGK~T~a~~La~~~g-----~~~is~gdllr 42 (229)
T PTZ00088 3 LKGPLKIVLFGAPGVGKGTFAEILSKKEN-----LKHINMGNILR 42 (229)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC-----CcEEECChHHH
Confidence 34556699999999999999999988763 66677777553
No 283
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.75 E-value=2.3e-05 Score=62.20 Aligned_cols=38 Identities=16% Similarity=0.389 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-.
T Consensus 23 ~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g 60 (235)
T cd03299 23 ERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNG 60 (235)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC
Confidence 45779999999999999999999999887766665543
No 284
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.74 E-value=3.3e-05 Score=62.51 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCC-----CCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQ-----DNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g-----~~v~vv~lD~~~ 66 (147)
.+..+.+++||||||||||++.+.+...... +.|.+-..|-|.
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~ 78 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccC
Confidence 3567999999999999999999987765432 345554555444
No 285
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.74 E-value=2.4e-05 Score=69.43 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=29.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+...++|+|+||||||||++.|.+++....+++.+
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i 402 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILL 402 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEE
Confidence 56789999999999999999999999887655544
No 286
>PRK14530 adenylate kinase; Provisional
Probab=97.74 E-value=3.1e-05 Score=60.76 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
..|+|+|++||||||+++.|++.+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998873
No 287
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=2.6e-05 Score=63.64 Aligned_cols=37 Identities=32% Similarity=0.523 Sum_probs=31.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 34 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~ 70 (280)
T PRK13633 34 KKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVD 70 (280)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 3567999999999999999999999988766666553
No 288
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.74 E-value=2e-05 Score=66.53 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=33.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
+..+++++||+|||||||++.|...+....+.+.+...|
T Consensus 66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~ 104 (340)
T PRK13536 66 SGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVP 104 (340)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEE
Confidence 567999999999999999999999998776667665544
No 289
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.74 E-value=5.1e-05 Score=59.20 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=34.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
+..++.|.|++||||||||..++..+...+.++.+++.+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 4578999999999999999999988877788888887664
No 290
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=2.7e-05 Score=64.03 Aligned_cols=35 Identities=17% Similarity=0.398 Sum_probs=29.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 66 (290)
T PRK13634 32 SGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI 66 (290)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence 56799999999999999999999998776555544
No 291
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.74 E-value=4.4e-05 Score=68.73 Aligned_cols=48 Identities=17% Similarity=0.336 Sum_probs=39.8
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhc-CCCCceeecCCCCCC
Q psy11490 20 PEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYD-KQDNPYVINLDPACR 67 (147)
Q Consensus 20 ~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~-~g~~v~vv~lD~~~~ 67 (147)
|+-.+++.+|+++|.+||||||+++.|...+.. .|+.+.++..|...+
T Consensus 386 ~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~ 434 (568)
T PRK05537 386 PPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRK 434 (568)
T ss_pred ccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHH
Confidence 445567889999999999999999999999986 666788888776644
No 292
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.74 E-value=2.4e-05 Score=66.12 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|+||||||||++.|+.++....+.+.+
T Consensus 22 ~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~ 56 (354)
T TIGR02142 22 GQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVL 56 (354)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 45799999999999999999999998766555544
No 293
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=3e-05 Score=57.63 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=30.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~ 59 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILID 59 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEEC
Confidence 457999999999999999999999887766555543
No 294
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=2.8e-05 Score=61.50 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=30.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
....+++|+|++|||||||++.|...+....+.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~ 59 (232)
T cd03300 24 KEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 356799999999999999999999998876665554
No 295
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.73 E-value=2.6e-05 Score=61.14 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 29 ~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~ 64 (220)
T TIGR02982 29 NPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKV 64 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 356799999999999999999999988766555544
No 296
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.73 E-value=2.2e-05 Score=66.67 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=29.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|+||||||||++.|+.++....+.+.+
T Consensus 27 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i 61 (353)
T PRK10851 27 SGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRF 61 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 56799999999999999999999998776655554
No 297
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.73 E-value=2.4e-05 Score=66.72 Aligned_cols=35 Identities=11% Similarity=0.329 Sum_probs=29.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|+||||||||++.|+..+....+.+.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~ 62 (369)
T PRK11000 28 EGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI 62 (369)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 56799999999999999999999998765544443
No 298
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.73 E-value=3.1e-05 Score=63.22 Aligned_cols=39 Identities=10% Similarity=0.312 Sum_probs=31.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
+..+|+|+|+||||||||++.|........+.+.+-..+
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~ 67 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQ 67 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccc
Confidence 567999999999999999999999777665555554433
No 299
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.73 E-value=3.3e-05 Score=55.82 Aligned_cols=31 Identities=26% Similarity=0.301 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
+|.|+|++||||||+++.|...+. ..+++.|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~-----~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG-----LPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-----Cceeccc
Confidence 489999999999999999998773 4456666
No 300
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.73 E-value=2.6e-05 Score=62.10 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=28.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh--hhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY--LYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~--l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|... +....+.+.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~ 68 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILF 68 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEE
Confidence 45789999999999999999999986 2344444544
No 301
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.73 E-value=2.6e-05 Score=62.56 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=25.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|++|||||||++.|...+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~~ 55 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRMHE 55 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3567999999999999999999999875
No 302
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.73 E-value=2.4e-05 Score=64.04 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-.
T Consensus 30 ~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g 67 (283)
T PRK13636 30 KKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDG 67 (283)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECC
Confidence 36789999999999999999999999877666665544
No 303
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.73 E-value=4.1e-05 Score=57.68 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=32.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.++|.|++|+|||+|+..++......|..+.+++++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~ 39 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESP 39 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCH
Confidence 368999999999999999887777778889999876544
No 304
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.73 E-value=3e-05 Score=63.38 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=26.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDK 53 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~ 53 (147)
.+..+++|+|++|||||||++.|+.++...
T Consensus 31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~ 60 (282)
T PRK13640 31 PRGSWTALIGHNGSGKSTISKLINGLLLPD 60 (282)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 356799999999999999999999998654
No 305
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=97.72 E-value=4.6e-05 Score=59.55 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=37.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
+|.|+|..|+||||++..|+..+...|.+|.+|.+|+...
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~ 41 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKAD 41 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 5888999999999999999999999999999999998763
No 306
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=4.4e-05 Score=68.55 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=36.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcC--CCCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDK--QDNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~--g~~v~vv~lD~~~ 66 (147)
.+..+|+|+|++|+||||++.+|...+... +.+|.++..|.|.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 346799999999999999999999877554 4679999999866
No 307
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.72 E-value=3.4e-05 Score=62.07 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=29.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|...+....+++.+
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i 80 (257)
T cd03288 46 PGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVI 80 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEE
Confidence 56799999999999999999999988766555554
No 308
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.72 E-value=2.4e-05 Score=65.88 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|+||||||||++.|..++....+.+.+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~ 80 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAW 80 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEE
Confidence 367799999999999999999999998765555544
No 309
>PLN02840 tRNA dimethylallyltransferase
Probab=97.72 E-value=5.5e-05 Score=66.03 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=35.2
Q ss_pred CCCCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 12 PASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 12 ~~~~~~~~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
+|++++..-. +.+..+|+|+||+||||||++..|.+.+. ..+|+.|...
T Consensus 8 ~~~~~~~~~~-~~~~~vi~I~GptgsGKTtla~~La~~~~-----~~iis~Ds~q 56 (421)
T PLN02840 8 TALSGSGASK-TKKEKVIVISGPTGAGKSRLALELAKRLN-----GEIISADSVQ 56 (421)
T ss_pred cccCCCcccc-ccCCeEEEEECCCCCCHHHHHHHHHHHCC-----CCeEeccccc
Confidence 3444433322 33455899999999999999999998874 3478888843
No 310
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.72 E-value=2.5e-05 Score=71.98 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=30.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
....|+|+|.||||||||++.|..+..+..+++.+-+
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg 534 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDG 534 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 4568999999999999999999999988665555533
No 311
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.72 E-value=2.5e-05 Score=66.42 Aligned_cols=35 Identities=11% Similarity=0.324 Sum_probs=29.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|+||||||||++.|+.+.....+.+.+
T Consensus 29 ~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~ 63 (356)
T PRK11650 29 DGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWI 63 (356)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEE
Confidence 56799999999999999999999998776554443
No 312
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.72 E-value=2.8e-05 Score=63.55 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=26.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDK 53 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~ 53 (147)
...+++|+|++|||||||++.|...+...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~laG~~~p~ 54 (272)
T PRK13547 26 PGRVTALLGRNGAGKSTLLKALAGDLTGG 54 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCc
Confidence 56799999999999999999999988754
No 313
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.72 E-value=3.2e-05 Score=63.05 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 66 (277)
T PRK13642 31 TKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKI 66 (277)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEE
Confidence 467899999999999999999999998876666655
No 314
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.72 E-value=2.8e-05 Score=63.31 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=29.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|+..+....+.+.+
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 56789999999999999999999998776555543
No 315
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=97.72 E-value=4.2e-05 Score=61.85 Aligned_cols=40 Identities=18% Similarity=0.382 Sum_probs=37.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
.|.|.|-.|+||||+|..|+..|...|.+|.+|.+|+...
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~ 41 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKAD 41 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 6889999999999999999999999999999999998764
No 316
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.71 E-value=2.7e-05 Score=64.31 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=32.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-.
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g 63 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCG 63 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 35679999999999999999999999887766666544
No 317
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.71 E-value=4.5e-05 Score=66.17 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=37.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh--cCCCCceeecCCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY--DKQDNPYVINLDPACR 67 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~--~~g~~v~vv~lD~~~~ 67 (147)
+..+|.++||+|+||||.+.+|+..+. ....+|.+|.+|.|.-
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI 246 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI 246 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh
Confidence 378999999999999999999988876 5667899999999884
No 318
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.71 E-value=3.5e-05 Score=62.43 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=24.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
...+++|+|++|||||||++.|...+.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 567899999999999999999999886
No 319
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.71 E-value=3.2e-05 Score=63.78 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=34.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
.+..+++++|.|||||||+.+.+.++....++.+.+-..|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~ 76 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKD 76 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcc
Confidence 4678999999999999999999999999887777776554
No 320
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.71 E-value=3.8e-05 Score=62.40 Aligned_cols=28 Identities=18% Similarity=0.466 Sum_probs=25.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|++|||||||++.|...+.
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3578999999999999999999999875
No 321
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=2.8e-05 Score=66.04 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+||||||||||++.|+.+.....+.+.+
T Consensus 31 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~ 65 (351)
T PRK11432 31 QGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFI 65 (351)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEE
Confidence 56799999999999999999999998876555443
No 322
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.71 E-value=3.9e-05 Score=59.61 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=24.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
++++|.|+|||||||||+++.|.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 578999999999999999999987653
No 323
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=97.70 E-value=4.5e-05 Score=61.96 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=36.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
+.|.|+|-.|+||||+|-.|+..|...|.+|.+|.+|+..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~ 41 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKA 41 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcc
Confidence 4678889999999999999999999999999999999974
No 324
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.70 E-value=2.6e-05 Score=66.61 Aligned_cols=37 Identities=19% Similarity=0.437 Sum_probs=31.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
+..+++|+|+||||||||++.|..+.....+.+.+-.
T Consensus 18 ~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G 54 (363)
T TIGR01186 18 KGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDG 54 (363)
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECC
Confidence 5679999999999999999999999988776666543
No 325
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.70 E-value=3.1e-05 Score=61.68 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=25.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|++|||||||++.|...+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3667999999999999999999999875
No 326
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.70 E-value=3.3e-05 Score=63.66 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=29.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
....+++|+|++|||||||++.|...+....+.+.
T Consensus 61 ~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~ 95 (282)
T cd03291 61 EKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIK 95 (282)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 35678999999999999999999998876655443
No 327
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=97.70 E-value=6.1e-05 Score=60.68 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=37.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.++|.|+|-.|+||||++..|+..+...|.+|.+|.+|+..
T Consensus 2 ~~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~ 42 (270)
T PRK13185 2 ALVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKH 42 (270)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCc
Confidence 46888889999999999999999999999999999999853
No 328
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.70 E-value=3.5e-05 Score=62.03 Aligned_cols=28 Identities=21% Similarity=0.459 Sum_probs=25.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|++|||||||++.|...+.
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 3567999999999999999999998875
No 329
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.69 E-value=3e-05 Score=65.84 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=29.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
...+++|+||||||||||++.|+.+.....+.+.+
T Consensus 29 ~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i 63 (353)
T TIGR03265 29 KGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQ 63 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEE
Confidence 46799999999999999999999998776555544
No 330
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.69 E-value=4.6e-05 Score=64.68 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=41.8
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
...+|.+|+++|-+|+||||.+.+|+.++..+|.+|.+..-|.|.
T Consensus 135 ~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFR 179 (340)
T COG0552 135 KEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFR 179 (340)
T ss_pred cCCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHH
Confidence 356799999999999999999999999999999999999999887
No 331
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.69 E-value=4.1e-05 Score=58.89 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=28.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
..+++|+|+|||||||+++.+...+.. ..++-|..
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~-----~~i~gd~~ 37 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSA-----KFIDGDDL 37 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC-----EEECCccc
Confidence 468999999999999999999998753 35555553
No 332
>PRK06761 hypothetical protein; Provisional
Probab=97.69 E-value=4.5e-05 Score=63.32 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=29.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
..+|.|+|++||||||+++.+.+.+...+.++.+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 4689999999999999999999999877765554
No 333
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.69 E-value=3.3e-05 Score=61.59 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=25.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|++|||||||++.|...+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 3567899999999999999999999875
No 334
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.68 E-value=3.2e-05 Score=64.52 Aligned_cols=44 Identities=27% Similarity=0.324 Sum_probs=40.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~ 68 (147)
...++|++|++|+||||+++.|...+.+.++.|.|...||+.+.
T Consensus 49 ~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~ 92 (325)
T COG4586 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRR 92 (325)
T ss_pred CCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhH
Confidence 34589999999999999999999999999999999999999854
No 335
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.68 E-value=3.3e-05 Score=66.84 Aligned_cols=37 Identities=16% Similarity=0.422 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|+||||||||++.|..++....+.+.+-
T Consensus 52 ~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~ 88 (400)
T PRK10070 52 EEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLID 88 (400)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEEC
Confidence 3577999999999999999999999998766666553
No 336
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=3.7e-05 Score=62.10 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=24.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+..+++|+|++|||||||++.|...+.
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 72 (268)
T PRK14248 46 KHAVTALIGPSGCGKSTFLRSINRMND 72 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 567899999999999999999998753
No 337
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=97.67 E-value=5.8e-05 Score=60.78 Aligned_cols=39 Identities=28% Similarity=0.378 Sum_probs=36.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
+|.|.|-.|+||||++..|+..+...|.+|.+|.+|+..
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~ 40 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKH 40 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 688889999999999999999999999999999999853
No 338
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.67 E-value=3.4e-05 Score=62.30 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINL 62 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~l 62 (147)
++|.++|.+|||||||++.|++.|...+..+..+.-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 478899999999999999999999988765555544
No 339
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=3.9e-05 Score=61.15 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=25.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|++|||||||++.|...+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 3567999999999999999999998775
No 340
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.67 E-value=4e-05 Score=59.44 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=29.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhh--hcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYL--YDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l--~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|.... ....+++.+-
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~ 62 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFK 62 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEEC
Confidence 467899999999999999999999984 4444455543
No 341
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.67 E-value=7.9e-05 Score=57.67 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=34.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
+..++.|+|++|||||+||..++......+..+.+++.+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3569999999999999999998887777777888888775
No 342
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.66 E-value=3.3e-05 Score=66.17 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=28.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
...+++|+|+||||||||++.|+.+.....+.+.
T Consensus 39 ~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~ 72 (375)
T PRK09452 39 NGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72 (375)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence 4568999999999999999999999877544443
No 343
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.66 E-value=4.3e-05 Score=62.91 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=29.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
.+|+|+|.+||||||+++.|.+.+...+..+.+++-|.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~ 39 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDS 39 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 47899999999999999999999999888888888444
No 344
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.66 E-value=4.3e-05 Score=61.14 Aligned_cols=29 Identities=21% Similarity=0.333 Sum_probs=26.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
.+..+++|+|++|||||||++.|...+..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 59 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRMNDL 59 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence 35779999999999999999999998874
No 345
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.66 E-value=4.4e-05 Score=60.95 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=26.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDK 53 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~ 53 (147)
.+..+++|+|++|||||||++.|...+...
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~ 57 (251)
T PRK14249 28 PERQITAIIGPSGCGKSTLLRALNRMNDIV 57 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCcc
Confidence 356799999999999999999999988754
No 346
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.65 E-value=3.5e-05 Score=67.63 Aligned_cols=37 Identities=14% Similarity=0.272 Sum_probs=30.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++|+|++|||||||++.|...+....+.+.+-
T Consensus 28 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~ 64 (501)
T PRK10762 28 YPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYL 64 (501)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 3578999999999999999999999987655555543
No 347
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.65 E-value=3.9e-05 Score=68.14 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
++...++|+|+|||||||+++.|.++.....+.+.+
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 467889999999999999999999999986666666
No 348
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.65 E-value=3.6e-05 Score=61.10 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=28.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhh--hcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYL--YDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l--~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+ ....+.+.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~ 62 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEF 62 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEE
Confidence 457799999999999999999999984 344444443
No 349
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.65 E-value=4.3e-05 Score=66.75 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 27 ~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~ 62 (490)
T PRK10938 27 NAGDSWAFVGANGSGKSALARALAGELPLLSGERQS 62 (490)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEE
Confidence 467799999999999999999999998765555544
No 350
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.65 E-value=4.9e-05 Score=53.60 Aligned_cols=23 Identities=30% Similarity=0.687 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 29 LIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 29 I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
|+|.||+|+||||+++.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 68999999999999999999984
No 351
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.65 E-value=4e-05 Score=57.20 Aligned_cols=43 Identities=30% Similarity=0.449 Sum_probs=27.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
...+..++|.|++|+|||++++.+...+...+..+..++.+..
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 3456899999999999999999999988876433455555554
No 352
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.65 E-value=7.9e-05 Score=62.45 Aligned_cols=39 Identities=26% Similarity=0.368 Sum_probs=33.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
+.|.+|+|.|+|||||||++..|+..+.. ..+++.|...
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~----~~vi~~D~~r 128 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGI----RSVIGTDSIR 128 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCC----CEEEechHHH
Confidence 46899999999999999999999998832 3578888766
No 353
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.64 E-value=3.6e-05 Score=66.62 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
.+..+++|+||+|||||||++.|...+....+.+.+-.
T Consensus 27 ~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G 64 (402)
T PRK09536 27 REGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAG 64 (402)
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECC
Confidence 36679999999999999999999999887666665544
No 354
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.64 E-value=4.3e-05 Score=62.00 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=25.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|++|||||||++.|...+.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 37 PRGKVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4677999999999999999999998865
No 355
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.64 E-value=4.4e-05 Score=61.77 Aligned_cols=39 Identities=28% Similarity=0.420 Sum_probs=33.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
+...++|+|++||||||+++.+..++.+..+.+.+-..+
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~ 67 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLD 67 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCee
Confidence 567999999999999999999999999887777554444
No 356
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.64 E-value=4.1e-05 Score=65.92 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=31.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
+..+++|+|+||||||||++.|...+....+.+.+-
T Consensus 49 ~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~id 84 (382)
T TIGR03415 49 EGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVK 84 (382)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC
Confidence 567899999999999999999999998777666654
No 357
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.64 E-value=5.4e-05 Score=60.79 Aligned_cols=27 Identities=22% Similarity=0.511 Sum_probs=24.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+..+++|+|++|||||||++.|...+.
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 567899999999999999999998875
No 358
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.64 E-value=7e-05 Score=49.53 Aligned_cols=34 Identities=24% Similarity=0.477 Sum_probs=29.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
++++.|..|+||||++..++..+...|.++.++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 3678999999999999999999998887777665
No 359
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.64 E-value=4.9e-05 Score=60.71 Aligned_cols=28 Identities=18% Similarity=0.333 Sum_probs=25.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|++|||||||++.|.....
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4678999999999999999999999865
No 360
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.64 E-value=4.1e-05 Score=67.32 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=30.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+...++|+|+||||||||++.|.++.....+.+.+
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~ 381 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAV 381 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 56789999999999999999999999877655544
No 361
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.64 E-value=7e-05 Score=58.20 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=30.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~ 68 (147)
+.+|+|+|++||||||+++.|.+ + | +.+++.|...+.
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~---g--~~~i~~D~~~~~ 38 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-L---G--APVIDADAIAHE 38 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-c---C--CEEEEecHHHHH
Confidence 36899999999999999998876 3 3 678888887655
No 362
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.63 E-value=3.8e-05 Score=56.67 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
+|+|+|||||||||+++.|.+.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCc
Confidence 3789999999999999999988753
No 363
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=4.7e-05 Score=58.70 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=24.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
.+..+++|+|++|||||||++.|....
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999999764
No 364
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.63 E-value=5.8e-05 Score=57.28 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=27.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 29 LIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 29 I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
|+|+|++||||||+++.|++.+. +..++.|...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~-----~~~i~~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG-----LPHISTGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC-----CeEEECcHHH
Confidence 78999999999999999988752 5667776543
No 365
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.63 E-value=5.4e-05 Score=61.31 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=25.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|++|||||||++.|...+.
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 3567999999999999999999999875
No 366
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.63 E-value=4.1e-05 Score=67.23 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
....+++|+|++|||||||++.|...+....+.+.+
T Consensus 29 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~ 64 (510)
T PRK09700 29 YPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITI 64 (510)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEE
Confidence 367899999999999999999999998765555544
No 367
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=4e-05 Score=65.68 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=28.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
+..+++|+|+||||||||++.|+.+.....+.+.
T Consensus 44 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~ 77 (377)
T PRK11607 44 KGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM 77 (377)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence 5679999999999999999999999876554443
No 368
>PRK14531 adenylate kinase; Provisional
Probab=97.63 E-value=5.9e-05 Score=57.81 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=26.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
..|+|+|++||||||+++.|+..+. +..++.+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g-----~~~is~gd 35 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG-----LRHLSTGD 35 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC-----CCeEeccc
Confidence 4689999999999999999988863 44455543
No 369
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.63 E-value=4.1e-05 Score=69.69 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=29.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+...++|+|+||||||||++.|..++....+.+.+
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 538 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 56789999999999999999999999876655544
No 370
>PLN02748 tRNA dimethylallyltransferase
Probab=97.63 E-value=0.00012 Score=64.60 Aligned_cols=41 Identities=29% Similarity=0.438 Sum_probs=33.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC--CCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP--ACRD 68 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~--~~~~ 68 (147)
..++.+|+|+||+|||||||+..|+..+. ..+|+.|. .|+.
T Consensus 19 ~~~~~~i~i~GptgsGKs~la~~la~~~~-----~eii~~DsmQVYrg 61 (468)
T PLN02748 19 KGKAKVVVVMGPTGSGKSKLAVDLASHFP-----VEIINADSMQVYSG 61 (468)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcC-----eeEEcCchheeeCC
Confidence 34567999999999999999999988763 67899996 4554
No 371
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.62 E-value=4e-05 Score=69.60 Aligned_cols=35 Identities=14% Similarity=0.345 Sum_probs=29.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+...++|+|+||||||||++.|..+.....+++.+
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 512 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFY 512 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 56789999999999999999999999876554443
No 372
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.62 E-value=4.9e-05 Score=60.57 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=24.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
....+++|+|++|||||||++.|...+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRMND 53 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3567999999999999999999998863
No 373
>PRK04296 thymidine kinase; Provisional
Probab=97.62 E-value=9.5e-05 Score=57.35 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=34.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee--cCCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI--NLDPAC 66 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv--~lD~~~ 66 (147)
..+++++|++|+||||++..++..+...+.++.++ .+|..+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~ 44 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRY 44 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccc
Confidence 46889999999999999999998887778888888 556544
No 374
>PF13173 AAA_14: AAA domain
Probab=97.62 E-value=9.9e-05 Score=53.36 Aligned_cols=40 Identities=30% Similarity=0.443 Sum_probs=32.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.++++|.|+.|+||||+++.+++.+. ...++..+++|...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPR 41 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHH
Confidence 46899999999999999999998776 33468888877644
No 375
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=4.2e-05 Score=64.15 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=25.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|+||||||||++.|..++.
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3567999999999999999999999886
No 376
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.62 E-value=5.7e-05 Score=59.66 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=35.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
....++|+|+||||||||+..++.+-...++.|.++..+-..
T Consensus 35 ~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ 76 (228)
T COG4181 35 RGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHK 76 (228)
T ss_pred CCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhh
Confidence 567899999999999999999998888888888887665443
No 377
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.62 E-value=4.6e-05 Score=66.92 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=30.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
+..+++|+|++|||||||++.|+.++....+.+.+-
T Consensus 288 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~ 323 (510)
T PRK09700 288 RGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLN 323 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEEC
Confidence 567899999999999999999999887665555553
No 378
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.62 E-value=5.2e-05 Score=60.42 Aligned_cols=28 Identities=18% Similarity=0.408 Sum_probs=24.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|++|||||||++.|...+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNRMND 54 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 3577999999999999999999998754
No 379
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=4.1e-05 Score=64.18 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=25.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|+||||||||++.|..++.
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 3677999999999999999999999875
No 380
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.61 E-value=3.9e-05 Score=64.49 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=26.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
.+..+++|+|+||||||||++.|..++..
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p 68 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLLAA 68 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCC
Confidence 35779999999999999999999999865
No 381
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.61 E-value=9.5e-05 Score=58.63 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=32.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDV 69 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l 69 (147)
..|+.|||+|+.||||||+++.|.+.+. ..+++.|...+.+
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg-----~~vidaD~i~~~l 44 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLN-----LNVVCADTISREI 44 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcC-----CeEEeccHHHHHH
Confidence 4578999999999999999999986552 4567777765543
No 382
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=6e-05 Score=60.16 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|++|||||||++.|.....
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~~~ 56 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFNRMND 56 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3577999999999999999999998864
No 383
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.61 E-value=7.8e-05 Score=56.95 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=27.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
...|+|+|++||||||+++.|.+.+. ..+++.|.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~-----~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN-----MEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC-----CcEEECCc
Confidence 45699999999999999999998863 45666665
No 384
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.61 E-value=5.2e-05 Score=58.58 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHH
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFS 47 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~ 47 (147)
.+..+++|+||||||||||++.+.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 356799999999999999999874
No 385
>PF13245 AAA_19: Part of AAA domain
Probab=97.61 E-value=0.0001 Score=49.63 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=24.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcC----CCCceeecCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDK----QDNPYVINLD 63 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~----g~~v~vv~lD 63 (147)
..++.|.||+|||||+++..+...+-.. +.++.++...
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 4577889999999995554444444432 4567776543
No 386
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.61 E-value=4.3e-05 Score=58.44 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDV 69 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l 69 (147)
+|+|+|++||||||+++.+.+ + | +.+++.|...+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~---g--~~~i~~D~~~~~~ 36 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L---G--IPVIDADKIAHEV 36 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C---C--CCEEecCHHHHhh
Confidence 489999999999999999987 2 3 6788889877653
No 387
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=5.4e-05 Score=60.86 Aligned_cols=28 Identities=21% Similarity=0.416 Sum_probs=25.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|++|||||||++.|...+.
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 63 (258)
T PRK14268 36 PKNSVTALIGPSGCGKSTFIRCLNRMND 63 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567899999999999999999998875
No 388
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.61 E-value=5.1e-05 Score=61.04 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=26.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
.+..+++|+|++|||||||++.|...+..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p 56 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGLITG 56 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 46779999999999999999999998864
No 389
>PLN02165 adenylate isopentenyltransferase
Probab=97.60 E-value=8.9e-05 Score=62.97 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=30.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
+..+++|+||+||||||++..|++.+. ..+++.|..
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~-----~eIIsaDs~ 77 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFP-----SEIINSDKM 77 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcC-----CceecCChh
Confidence 456899999999999999999988874 357777775
No 390
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.60 E-value=4.4e-05 Score=61.16 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=28.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+.. .+.+.+
T Consensus 20 ~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~ 54 (248)
T PRK03695 20 RAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQF 54 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEE
Confidence 35679999999999999999999988754 334443
No 391
>KOG2749|consensus
Probab=97.60 E-value=9.2e-05 Score=63.56 Aligned_cols=46 Identities=20% Similarity=0.357 Sum_probs=42.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDV 69 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l 69 (147)
+..+++.|+||+-+||||+|+.|..+.-.+|+++..+++|+....+
T Consensus 101 ~~GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~si 146 (415)
T KOG2749|consen 101 SYGPRVMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSI 146 (415)
T ss_pred ccCCEEEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCce
Confidence 4577899999999999999999999999999999999999988753
No 392
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.60 E-value=8e-05 Score=48.71 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=23.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDK 53 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~ 53 (147)
..+.+|+|++||||||+..++.-.|-..
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3479999999999999999998777543
No 393
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.60 E-value=5e-05 Score=68.67 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=29.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
.+..+++|+|+||||||||++.|..++....+.+.
T Consensus 40 ~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~ 74 (623)
T PRK10261 40 QRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQ 74 (623)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEE
Confidence 35789999999999999999999999876544443
No 394
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=5.9e-05 Score=60.27 Aligned_cols=28 Identities=14% Similarity=0.347 Sum_probs=25.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|++|||||||++.|...+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRMHD 55 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 3567899999999999999999999874
No 395
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.60 E-value=4.9e-05 Score=66.97 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=29.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 35 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~ 70 (510)
T PRK15439 35 HAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEI 70 (510)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 356799999999999999999999998765545544
No 396
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=6.2e-05 Score=59.94 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=25.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
.+..+++|+|++|||||||++.|...+..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 56 (252)
T PRK14272 28 QRGTVNALIGPSGCGKTTFLRAINRMHDL 56 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 35679999999999999999999998753
No 397
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.59 E-value=5.5e-05 Score=61.20 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=25.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
.+..+++|+|++|||||||++.|...+..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSLNRMNDL 60 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHccccc
Confidence 35679999999999999999999988854
No 398
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.59 E-value=4.9e-05 Score=69.23 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=29.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+...++|+|+||||||||++.|.++.....+++.+
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~i 533 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEE
Confidence 46789999999999999999999998876555444
No 399
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.59 E-value=4.9e-05 Score=67.63 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=26.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCc
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNP 57 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v 57 (147)
+...++|+|+|||||||+++.|.+++ +..+.+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I 406 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL-PYQGSL 406 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEE
Confidence 56789999999999999999999998 443333
No 400
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.59 E-value=5.2e-05 Score=64.65 Aligned_cols=35 Identities=17% Similarity=0.371 Sum_probs=29.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCC--CCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQ--DNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g--~~v~v 59 (147)
...+++|+||||||||||++.|+.+..... +.+.+
T Consensus 30 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~ 66 (362)
T TIGR03258 30 AGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAI 66 (362)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEE
Confidence 467899999999999999999999887765 54443
No 401
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.59 E-value=5.9e-05 Score=66.63 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=29.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
++...++|+|+||||||||++.|........+.+.+
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i 391 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILL 391 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEE
Confidence 357789999999999999999999999876554443
No 402
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.58 E-value=0.00027 Score=54.28 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
+++|+|++|||||+|+..++.. .+.++.++
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~ 30 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYI 30 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEE
Confidence 4789999999999999988754 33345444
No 403
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.58 E-value=8.6e-05 Score=57.98 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~ 68 (147)
.+|+|+|+.||||||+++.|.+.+ | ..+++.|...+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~---g--~~~i~~D~~~~~ 38 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK---G--IPILDADIYARE 38 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh---C--CeEeeCcHHHHH
Confidence 379999999999999999998765 2 567777876654
No 404
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.58 E-value=6.9e-05 Score=60.48 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=27.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQD 55 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~ 55 (147)
+..+++|+|++|||||||++.|........+
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G 65 (257)
T PRK14246 35 NNSIFGIMGPSGSGKSTLLKVLNRLIEIYDS 65 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCcC
Confidence 5679999999999999999999998875543
No 405
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.58 E-value=5.7e-05 Score=66.68 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=28.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
.+..+++|+|++|||||||++.|...+....+.+.
T Consensus 25 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~ 59 (530)
T PRK15064 25 GGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVS 59 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 35679999999999999999999998876544443
No 406
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.58 E-value=5.5e-05 Score=66.59 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=29.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 309 ~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~ 343 (520)
T TIGR03269 309 EGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNV 343 (520)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 56789999999999999999999998766556655
No 407
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.57 E-value=5.9e-05 Score=67.16 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=29.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
....+++|+|++|||||||++.|...+....+.+.
T Consensus 31 ~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~ 65 (556)
T PRK11819 31 FPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEAR 65 (556)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 35678999999999999999999999876554443
No 408
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.57 E-value=6e-05 Score=61.17 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=25.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|++|||||||++.|...+.
T Consensus 49 ~~Ge~~~I~G~nGsGKSTLl~~laGl~~ 76 (272)
T PRK14236 49 PKNRVTAFIGPSGCGKSTLLRCFNRMND 76 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3677999999999999999999998875
No 409
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.57 E-value=5.4e-05 Score=66.18 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=29.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 22 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 57 (491)
T PRK10982 22 RPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILF 57 (491)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEE
Confidence 356799999999999999999999998765555544
No 410
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.57 E-value=6.5e-05 Score=60.56 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=26.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDK 53 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~ 53 (147)
.+..+++|+|++|||||||++.|...+...
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~ 60 (261)
T PRK14258 31 YQSKVTAIIGPSGCGKSTFLKCLNRMNELE 60 (261)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 367799999999999999999999998753
No 411
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.57 E-value=5.6e-05 Score=67.39 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=29.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+...++|+|+||||||||++.|.+++.+.++.+.+
T Consensus 366 ~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 400 (592)
T PRK10790 366 SRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEE
Confidence 45789999999999999999999999887655443
No 412
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.57 E-value=6.6e-05 Score=66.11 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=29.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhh--hcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYL--YDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l--~~~g~~v~v 59 (147)
.+..+++|+|+||||||||++.|+..+ ....+.+.+
T Consensus 24 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~ 61 (520)
T TIGR03269 24 EEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIY 61 (520)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEE
Confidence 356799999999999999999999986 344445554
No 413
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.56 E-value=5.6e-05 Score=67.48 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=29.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+...++|+|+||||||||++.|.++.....+.+.+
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i 399 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILL 399 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 56689999999999999999999999876655444
No 414
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.56 E-value=5.8e-05 Score=67.28 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=29.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+...++|+|+||||||||++.|..+.....+++.+
T Consensus 340 ~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~ 374 (569)
T PRK10789 340 PGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRF 374 (569)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEE
Confidence 56789999999999999999999998876655544
No 415
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.56 E-value=6.7e-05 Score=63.37 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=32.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINL 62 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~l 62 (147)
...++++.|||||||||+++.|+.+..+..+.+.+-..
T Consensus 27 ~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~ 64 (345)
T COG1118 27 SGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGR 64 (345)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCE
Confidence 56799999999999999999999999887766665444
No 416
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.56 E-value=7.4e-05 Score=66.19 Aligned_cols=33 Identities=12% Similarity=0.277 Sum_probs=28.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCc
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNP 57 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v 57 (147)
+...++|+|+||||||||++.|..++....+.+
T Consensus 365 ~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I 397 (576)
T TIGR02204 365 PGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397 (576)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 567899999999999999999999998765444
No 417
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.56 E-value=8.7e-05 Score=59.74 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=38.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
..+..+++|.|++||||||+++.|+.++.+..+.+.+-..|.-..
T Consensus 25 ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~ 69 (245)
T COG4555 25 AEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD 69 (245)
T ss_pred eccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC
Confidence 356789999999999999999999999999888888877776443
No 418
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=97.56 E-value=0.0001 Score=59.33 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=35.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
+|.|.|-.|+||||+|..|+..|...|.+|.+|.+|+..
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~ 40 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKH 40 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 577889999999999999999999999999999999865
No 419
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.56 E-value=6.8e-05 Score=61.54 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=24.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+..+++|+|++|||||||++.|...+.
T Consensus 64 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 90 (285)
T PRK14254 64 ENQVTAMIGPSGCGKSTFLRCINRMND 90 (285)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 567899999999999999999998875
No 420
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.56 E-value=6.2e-05 Score=68.92 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=29.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
+...++|+|+|||||||+++.|.+++...++++.
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 539 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL 539 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 5678999999999999999999999987655443
No 421
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.0001 Score=68.50 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=35.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh-cCC-CCceeecCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY-DKQ-DNPYVINLDPAC 66 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~-~~g-~~v~vv~lD~~~ 66 (147)
++.+|+++||+|+||||++.+|+..+. ..| .+|.++..|.|.
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 467999999999999999999998874 444 479999999876
No 422
>PRK08356 hypothetical protein; Provisional
Probab=97.56 E-value=8.2e-05 Score=57.58 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=27.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
+..+|+|+|++||||||+|+.|.. .| ..++++.+..
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~~----~g--~~~is~~~~~ 39 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFEE----KG--FCRVSCSDPL 39 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH----CC--CcEEeCCCcc
Confidence 346899999999999999999942 24 4467766644
No 423
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.56 E-value=5.4e-05 Score=67.12 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=30.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
+...++|+|+||||||||++.|.+......+.+.+-
T Consensus 348 ~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 383 (547)
T PRK10522 348 RGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLD 383 (547)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 567899999999999999999999987766555553
No 424
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.56 E-value=8e-05 Score=59.30 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=25.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
.+..+++|+|++|||||||++.|......
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (249)
T PRK14253 27 PARQVTALIGPSGCGKSTLLRCLNRMNDL 55 (249)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhccc
Confidence 35679999999999999999999988763
No 425
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.55 E-value=8.1e-05 Score=60.16 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=24.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|++|||||||++.|..+..
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 61 (264)
T PRK14243 34 PKNQITAFIGPSGCGKSTILRCFNRLND 61 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3577999999999999999999998764
No 426
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.55 E-value=0.00015 Score=56.61 Aligned_cols=41 Identities=32% Similarity=0.373 Sum_probs=33.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
.+.+++|+++|+.|||||||++.+.+.+.. +.++.++.-|.
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~-~~~v~v~~~~~ 59 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKD-EVKIAVIEGDV 59 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhc-CCeEEEEECCC
Confidence 346899999999999999999999987653 34677776665
No 427
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=7.4e-05 Score=60.84 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=24.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+..+++|+|++|||||||++.|...+.
T Consensus 45 ~Ge~~~IiG~nGsGKSTLl~~l~Gl~~ 71 (274)
T PRK14265 45 AKKIIAFIGPSGCGKSTLLRCFNRMND 71 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 567899999999999999999998764
No 428
>PF05729 NACHT: NACHT domain
Probab=97.55 E-value=8.2e-05 Score=54.22 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=24.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQ 54 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g 54 (147)
++++|.|++|+||||+++.++..+....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 3689999999999999999998887654
No 429
>PRK13973 thymidylate kinase; Provisional
Probab=97.55 E-value=0.00013 Score=57.40 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=31.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
++.+|+|-|..||||||.++.|.++|...|..+...
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 367999999999999999999999999888665444
No 430
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.54 E-value=0.00012 Score=59.44 Aligned_cols=40 Identities=13% Similarity=0.302 Sum_probs=33.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
+..++.|+|+||+||||||..++......|.++.+++++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 3568999999999999999998776656688899998874
No 431
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.54 E-value=7.7e-05 Score=61.26 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=29.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
....+++|+|++|||||||++.|...+. ..+.+.+
T Consensus 28 ~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i 62 (275)
T cd03289 28 SPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQI 62 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEE
Confidence 3567999999999999999999999987 4445554
No 432
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.54 E-value=9.5e-05 Score=58.92 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=28.2
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
.+....+|.|+|.||||||||++++.-+-.+..+.+.
T Consensus 28 ~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~ 64 (256)
T COG4598 28 QANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR 64 (256)
T ss_pred ecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEE
Confidence 3556789999999999999999999655544443443
No 433
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.54 E-value=8.2e-05 Score=60.00 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=25.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|++|||||||++.|...+.
T Consensus 40 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 67 (265)
T PRK14252 40 HEKQVTALIGPSGCGKSTFLRCFNRMHD 67 (265)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 3677999999999999999999998875
No 434
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.54 E-value=6.2e-05 Score=66.05 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=29.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 277 ~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~ 311 (501)
T PRK10762 277 KGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTL 311 (501)
T ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 45789999999999999999999988765555554
No 435
>PRK14532 adenylate kinase; Provisional
Probab=97.54 E-value=9.1e-05 Score=56.51 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
.|+++|++||||||+++.|++.+. ...++.|.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g-----~~~is~~d 33 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG-----MVQLSTGD 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-----CeEEeCcH
Confidence 488999999999999999987663 45566554
No 436
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.54 E-value=6.2e-05 Score=66.06 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=29.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 278 ~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 312 (501)
T PRK11288 278 AGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYL 312 (501)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEE
Confidence 46789999999999999999999998766656654
No 437
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.54 E-value=7.1e-05 Score=67.69 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=29.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|+||||||||++.|..++....+.+.+
T Consensus 349 ~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~ 383 (623)
T PRK10261 349 PGETLSLVGESGSGKSTTGRALLRLVESQGGEIIF 383 (623)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEE
Confidence 56789999999999999999999998765545544
No 438
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.54 E-value=6.5e-05 Score=67.02 Aligned_cols=34 Identities=12% Similarity=0.289 Sum_probs=28.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
+...++|+|+||||||||++.|..+.....+.+.
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 5678999999999999999999999887654443
No 439
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.53 E-value=8e-05 Score=60.81 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=30.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+...+||+|.+|||||||++.|+..+++..+.+.+
T Consensus 52 ~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v 86 (249)
T COG1134 52 KGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKV 86 (249)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEE
Confidence 56789999999999999999999999887665544
No 440
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.53 E-value=6.1e-05 Score=66.07 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~ 63 (501)
T PRK11288 28 RAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILI 63 (501)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 356799999999999999999999988765555554
No 441
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.53 E-value=6.8e-05 Score=68.17 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=29.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+...++|+|+||||||||++.|.++.....+.+.+
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 524 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLL 524 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 46789999999999999999999998876554443
No 442
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.52 E-value=0.0001 Score=58.71 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+++|+|.||+||||||+++.|.+.+.
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998774
No 443
>KOG0635|consensus
Probab=97.52 E-value=0.00031 Score=54.44 Aligned_cols=46 Identities=24% Similarity=0.435 Sum_probs=39.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
..++..+|.|+|-|||||||++-.|.+.|...|...+++.-|+-..
T Consensus 27 ~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRh 72 (207)
T KOG0635|consen 27 LKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRH 72 (207)
T ss_pred hcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccc
Confidence 3456789999999999999999999999999888788887777553
No 444
>PRK13949 shikimate kinase; Provisional
Probab=97.52 E-value=0.0001 Score=56.34 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
.|+|+|++||||||+++.|++.+. ..++++|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~-----~~~id~D~~ 35 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG-----LSFIDLDFF 35 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-----CCeecccHH
Confidence 589999999999999999999884 456666754
No 445
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.52 E-value=0.00017 Score=56.53 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=34.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
...++.|.|++|+|||+||..++......+.++.++..+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 467999999999999999999998777778889998887
No 446
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.52 E-value=0.0001 Score=57.90 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=24.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
++.+|+|+|.|||||||+++.|...+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 57799999999999999999999886
No 447
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.52 E-value=0.00015 Score=57.20 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=34.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcC-CCCceeecCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDK-QDNPYVINLDPAC 66 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~-g~~v~vv~lD~~~ 66 (147)
+..+++|+|++|+|||||+..++...... +..+.+++++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~ 54 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSK 54 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCH
Confidence 45699999999999999999887766555 8889999877644
No 448
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.52 E-value=6.8e-05 Score=66.08 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=29.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 288 ~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~ 322 (510)
T PRK15439 288 AGEILGLAGVVGAGRTELAETLYGLRPARGGRIML 322 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEE
Confidence 56789999999999999999999988765555544
No 449
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.52 E-value=8.7e-05 Score=59.66 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=25.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|++|||||||++.|...+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 31 YRNKVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3577999999999999999999999876
No 450
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.51 E-value=7.7e-05 Score=66.02 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=29.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+...++|+|+||||||||++.|...+....+++.+
T Consensus 343 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 377 (544)
T TIGR01842 343 AGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRL 377 (544)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 56789999999999999999999998776555544
No 451
>PRK13409 putative ATPase RIL; Provisional
Probab=97.51 E-value=8.9e-05 Score=66.95 Aligned_cols=42 Identities=26% Similarity=0.175 Sum_probs=34.7
Q ss_pred CCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 17 DHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 17 ~~~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
=|+.+.-.+..+++|+|++||||||+++.|...+....+++.
T Consensus 90 L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~ 131 (590)
T PRK13409 90 LYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE 131 (590)
T ss_pred EecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcccc
Confidence 355666667889999999999999999999999877655654
No 452
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.51 E-value=6.5e-05 Score=65.69 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=29.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 273 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 307 (491)
T PRK10982 273 KGEILGIAGLVGAKRTDIVETLFGIREKSAGTITL 307 (491)
T ss_pred CCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEE
Confidence 56799999999999999999999998766555554
No 453
>PLN02924 thymidylate kinase
Probab=97.51 E-value=0.00018 Score=57.47 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=32.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
+++.+|.|.|.-||||||.++.|.+.+...|..+.++
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~ 50 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELW 50 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceee
Confidence 4578999999999999999999999999988776544
No 454
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.51 E-value=7e-05 Score=66.15 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=27.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCc
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNP 57 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v 57 (147)
+..+++|+|++|||||||++.|+..+....+.+
T Consensus 344 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i 376 (530)
T PRK15064 344 AGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 455889999999999999999999886654443
No 455
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.51 E-value=0.00012 Score=53.11 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=26.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 29 LIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 29 I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
|+++|++|+|||++++.+++.+ +..+..+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~ 34 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GRPVIRINCSS 34 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TT
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hcceEEEEecc
Confidence 6899999999999999999999 33465665554
No 456
>PRK13975 thymidylate kinase; Provisional
Probab=97.51 E-value=0.00011 Score=56.04 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=24.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
..+|+|.|+.||||||+++.|.+.+..
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999999864
No 457
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.51 E-value=8.2e-05 Score=66.16 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=28.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
.+..+++|+|++|||||||++.|...+....+.+.
T Consensus 29 ~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~ 63 (552)
T TIGR03719 29 FPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEAR 63 (552)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 35679999999999999999999998866544443
No 458
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.51 E-value=8e-05 Score=65.41 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=28.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhc--CCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYD--KQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~--~g~~v~v 59 (147)
....+++|+|++|||||||++.|...+.. ..+.+.+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~ 66 (506)
T PRK13549 29 RAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIF 66 (506)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE
Confidence 35789999999999999999999998874 3334443
No 459
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.51 E-value=0.00012 Score=66.47 Aligned_cols=47 Identities=21% Similarity=0.366 Sum_probs=40.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDV 69 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l 69 (147)
..++.+|+++|.+||||||+++.|.+.+...+..+.+++-|...+.+
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l 503 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGL 503 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhcc
Confidence 34689999999999999999999999998777778888888876544
No 460
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.50 E-value=8.5e-05 Score=67.44 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=29.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 337 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~ 371 (638)
T PRK10636 337 PGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL 371 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 56789999999999999999999998765555543
No 461
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.50 E-value=9.3e-05 Score=60.70 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=24.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
...+++|+|++|||||||++.|..+..
T Consensus 64 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 90 (286)
T PRK14275 64 SKYVTAIIGPSGCGKSTFLRAINRMND 90 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 567899999999999999999998753
No 462
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=6.8e-05 Score=65.86 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=28.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh-cCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY-DKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~-~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|...+. ...+.+.+
T Consensus 287 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~ 322 (506)
T PRK13549 287 RGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFI 322 (506)
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEE
Confidence 567899999999999999999999886 34445554
No 463
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.50 E-value=9.4e-05 Score=61.26 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=24.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+..+++|+|++|||||||++.|...+.
T Consensus 70 ~Ge~~~IvG~nGsGKSTLl~~L~Gl~~ 96 (305)
T PRK14264 70 EKSVTALIGPSGCGKSTFLRCLNRMND 96 (305)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 567899999999999999999998874
No 464
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.00017 Score=62.99 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=33.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh--cCCCCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY--DKQDNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~--~~g~~v~vv~lD~~~ 66 (147)
.++.+++++|++|+||||++++|+..+. ..+..+.++..|.+.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~r 233 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYR 233 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcc
Confidence 3567999999999999999999987642 223467888888866
No 465
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.49 E-value=9.3e-05 Score=56.77 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhcC
Q psy11490 29 LIVLGMAGSGKTSFVKKFSSYLYDK 53 (147)
Q Consensus 29 I~I~G~SGSGKTTl~~~L~~~l~~~ 53 (147)
|+|+|++|+||||+++++.+.+...
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~ 26 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKK 26 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHhhcc
Confidence 7899999999999999999999654
No 466
>PRK04182 cytidylate kinase; Provisional
Probab=97.49 E-value=9.6e-05 Score=55.23 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+|+|+|.+||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 799999999999999999988763
No 467
>PRK12338 hypothetical protein; Provisional
Probab=97.49 E-value=0.00011 Score=62.04 Aligned_cols=28 Identities=21% Similarity=0.460 Sum_probs=25.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
++|.+|+|.|+|||||||+++.|+..+.
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~ 29 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLN 29 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCC
Confidence 4678999999999999999999999874
No 468
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=97.49 E-value=7.6e-05 Score=66.38 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=30.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
+...++|+|+|||||||+++.|.++.....+.+.+-
T Consensus 367 ~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~ 402 (555)
T TIGR01194 367 QGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLD 402 (555)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 567899999999999999999999988776666553
No 469
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.49 E-value=0.00022 Score=58.80 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=38.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.++..++++|++|+||||+++.+...+...+..+.+++.|.+.
T Consensus 73 ~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 73 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 3567999999999999999999999888777889999999875
No 470
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.48 E-value=0.00014 Score=57.50 Aligned_cols=37 Identities=30% Similarity=0.389 Sum_probs=31.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~ 68 (147)
..+|||+|..||||||+++.+.. + | +.+++.|...+.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~---G--~~vidaD~v~r~ 38 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-L---G--FPVIDADDVARE 38 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-c---C--CeEEEccHHHHH
Confidence 57899999999999999998876 3 2 788888987764
No 471
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.48 E-value=7.8e-05 Score=67.51 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=29.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
...+++|+|++|||||||++.|...+....+.+.+
T Consensus 28 ~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~ 62 (635)
T PRK11147 28 DNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIY 62 (635)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEe
Confidence 56799999999999999999999988766555543
No 472
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=97.48 E-value=0.00011 Score=58.97 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=35.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
++|.|+|-.|+||||++..|+..+...| +|.+|.+|+..
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~ 41 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKA 41 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCc
Confidence 5688889999999999999999999888 99999999865
No 473
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.48 E-value=0.0001 Score=54.71 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
+|+|+|++||||||+++.|.+.+. ..+++.|...
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg-----~~~~~~~~~~ 35 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS-----LKLISAGDIF 35 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-----CceecHHHHH
Confidence 799999999999999999988763 4456665433
No 474
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.48 E-value=8.5e-05 Score=67.45 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=29.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
...+++|+|++|||||||++.|...+....+.|.+
T Consensus 26 ~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~ 60 (638)
T PRK10636 26 PGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTF 60 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 56789999999999999999999988765555543
No 475
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.48 E-value=0.00014 Score=57.08 Aligned_cols=32 Identities=28% Similarity=0.240 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
.|+|.|++||||||+++.|++.+. +..++++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~-----~~~is~~d 33 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG-----IPHISTGD 33 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcEEECCc
Confidence 589999999999999999988764 55666654
No 476
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.48 E-value=0.00015 Score=59.11 Aligned_cols=38 Identities=34% Similarity=0.677 Sum_probs=29.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
...++.++|+|++|||||||+..|...+...=..+.++
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~ 47 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLI 47 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEE
Confidence 45688999999999999999999988776543334443
No 477
>PRK09183 transposase/IS protein; Provisional
Probab=97.48 E-value=0.00014 Score=59.19 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=32.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINL 62 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~l 62 (147)
+...++|.||+|+|||+++..|...+...|.+|.+++.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 45678899999999999999998887777878877663
No 478
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.47 E-value=0.00014 Score=59.48 Aligned_cols=35 Identities=29% Similarity=0.277 Sum_probs=27.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.-+++|+|++||||||+++.+...+...+..+..+
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iiti 114 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITV 114 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEE
Confidence 34799999999999999999988886544334333
No 479
>PRK07933 thymidylate kinase; Validated
Probab=97.47 E-value=0.00014 Score=57.45 Aligned_cols=37 Identities=14% Similarity=0.331 Sum_probs=32.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
++|+|.|.-||||||+++.|.++|...|..|.+...-
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P 37 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFP 37 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 3789999999999999999999999998877776543
No 480
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.47 E-value=0.00014 Score=56.51 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=33.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
..+..+.|.|++|+|||++++.+...+...+..+.+++.+..
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 346689999999999999999999988766666666665443
No 481
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.47 E-value=0.00014 Score=58.18 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=33.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
..+.|.||+|+|||++++.+...+...|.++.+++++..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 468899999999999999999988877878888877653
No 482
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.47 E-value=0.00014 Score=57.97 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=24.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+|++|||||||++.|...+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (250)
T PRK14266 27 PKNSVTALIGPSGCGKSTFIRTLNRMND 54 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3567999999999999999999998753
No 483
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=97.46 E-value=0.00017 Score=58.46 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=38.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~ 68 (147)
++|.|+|-.|+||||++-.|+..|...|.+|.+|.+|+....
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~ 43 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADS 43 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccc
Confidence 467888999999999999999999999999999999997653
No 484
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.46 E-value=0.00012 Score=53.54 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=26.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 29 LIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 29 I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
|+|+|++||||||+++.|.+.+. ..+++.|...
T Consensus 2 i~l~G~~GsGKstla~~la~~l~-----~~~~~~d~~~ 34 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG-----LPFVDLDELI 34 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC-----CCEEEchHHH
Confidence 78999999999999999998873 4456666543
No 485
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=97.46 E-value=0.00028 Score=59.74 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=42.5
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCC
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~ 68 (147)
+..++.++|.|+|..|+||||++..|+..+...|.+|.+|..|+....
T Consensus 26 ~~~~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~ 73 (329)
T cd02033 26 PPTKKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDT 73 (329)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccc
Confidence 445578899999999999999999999999999999999999988744
No 486
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.46 E-value=9.9e-05 Score=65.18 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=27.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|..++. ..+++.+
T Consensus 311 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~ 344 (529)
T PRK15134 311 PGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWF 344 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEE
Confidence 567899999999999999999999885 3344443
No 487
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.46 E-value=7.3e-05 Score=53.07 Aligned_cols=28 Identities=32% Similarity=0.549 Sum_probs=21.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
+..++.|.|++|+|||++++.+...+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 4568999999999999999999998864
No 488
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.46 E-value=0.00012 Score=55.84 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=23.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
++.++|+|||||||||+++.|.+.++.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~ 28 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPD 28 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccc
Confidence 568899999999999999999987754
No 489
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00011 Score=59.67 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=36.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
-.+..++.++|++|+||||+++.+....+...+.+.+-..|-..
T Consensus 26 v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~ 69 (237)
T COG0410 26 VERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITG 69 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCC
Confidence 34678999999999999999999999999877777776555443
No 490
>PRK02496 adk adenylate kinase; Provisional
Probab=97.46 E-value=0.00014 Score=55.35 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
..++|.|++||||||+++.|...+.
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999988763
No 491
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00012 Score=58.92 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=29.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
....+++.|||||||||+++.++.+.....+++++
T Consensus 30 ~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l 64 (259)
T COG4525 30 SGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQL 64 (259)
T ss_pred CCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEE
Confidence 35678899999999999999999999876555554
No 492
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.46 E-value=9.3e-05 Score=65.91 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=27.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
...+++|+|++|||||||++.|...+....+.+.
T Consensus 349 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~ 382 (556)
T PRK11819 349 PGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIK 382 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 3468999999999999999999998876554443
No 493
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.46 E-value=0.00016 Score=62.16 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=23.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
-.++|+|++||||||+++.|.+++..
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999998864
No 494
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.45 E-value=9.8e-05 Score=66.88 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=28.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
+..+++|+|++|||||||++.|...+....+.+.
T Consensus 344 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~ 377 (635)
T PRK11147 344 RGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH 377 (635)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE
Confidence 4568999999999999999999998876554443
No 495
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=97.45 E-value=0.00018 Score=58.33 Aligned_cols=42 Identities=17% Similarity=0.339 Sum_probs=38.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~ 68 (147)
++|.|+|-.|+||||++..|+..|...|.+|.++.+|+....
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~ 43 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADS 43 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEeccccccc
Confidence 467788999999999999999999999999999999997754
No 496
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.0001 Score=58.80 Aligned_cols=27 Identities=15% Similarity=0.378 Sum_probs=24.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+..+++|+|++|||||||++.|.....
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (252)
T PRK14255 30 QNEITALIGPSGCGKSTYLRTLNRMND 56 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 567999999999999999999998753
No 497
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00011 Score=58.53 Aligned_cols=26 Identities=23% Similarity=0.572 Sum_probs=23.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
....+++|+|++|||||||++.|...
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 27 EEKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 35679999999999999999999875
No 498
>PRK13947 shikimate kinase; Provisional
Probab=97.45 E-value=0.00015 Score=54.22 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.|+|+|++||||||+++.|++.+. ..+++.|..-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg-----~~~id~d~~~ 36 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS-----FGFIDTDKEI 36 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC-----CCEEECchhh
Confidence 489999999999999999998874 4456666543
No 499
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00011 Score=58.60 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=23.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
+..+++|+|++|||||||++.|....
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINRMN 55 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccc
Confidence 56799999999999999999998864
No 500
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.45 E-value=0.00013 Score=58.80 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=42.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccCCCCccccc-CCCCChHHHHHHHhC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDV-PYLVNVGELSMLLLN 97 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~~d~~n~d~-p~a~d~~~~l~~L~~ 97 (147)
...|+|+|+.||||||+++.|...+.....++.++. |+....++. .+...+.. ....++.+.+...++
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE-d~~E~~l~~---~~~~~~~~~~~~~~~~~~l~~~LR 195 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE-DPPELRLPG---PNQIQIQTRRDEISYEDLLKSALR 195 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE-SSS-S--SC---SSEEEEEEETTTBSHHHHHHHHTT
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEec-cccceeecc---cceEEEEeecCcccHHHHHHHHhc
Confidence 578999999999999999999999988744555554 443322321 11222222 345566665665554
Done!