Query psy11490
Match_columns 147
No_of_seqs 188 out of 1874
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 19:46:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqc_A Pantothenate kinase; bi 99.5 7.1E-14 2.4E-18 115.9 7.9 92 22-113 88-186 (321)
2 1uj2_A Uridine-cytidine kinase 99.3 2E-12 7E-17 101.7 7.8 95 17-111 13-119 (252)
3 1odf_A YGR205W, hypothetical 3 99.2 4.9E-12 1.7E-16 103.0 3.8 88 23-110 28-135 (290)
4 3c8u_A Fructokinase; YP_612366 99.1 8.2E-11 2.8E-15 89.9 6.8 89 24-112 20-112 (208)
5 1sq5_A Pantothenate kinase; P- 99.1 1.9E-10 6.4E-15 93.6 8.4 89 24-112 78-173 (308)
6 3aez_A Pantothenate kinase; tr 99.1 3.4E-10 1.2E-14 92.9 8.5 114 23-140 87-207 (312)
7 3asz_A Uridine kinase; cytidin 99.1 2E-10 6.7E-15 87.1 6.3 87 22-112 2-94 (211)
8 1a7j_A Phosphoribulokinase; tr 99.0 5.1E-11 1.7E-15 96.7 1.0 83 25-108 4-100 (290)
9 1rz3_A Hypothetical protein rb 98.9 1.7E-09 5.9E-14 82.2 6.6 85 24-109 20-111 (201)
10 2ga8_A Hypothetical 39.9 kDa p 98.9 1.5E-09 5.3E-14 91.3 4.6 56 56-111 155-247 (359)
11 2jeo_A Uridine-cytidine kinase 98.8 1E-08 3.5E-13 80.1 8.0 88 24-111 23-122 (245)
12 2qt1_A Nicotinamide riboside k 98.5 2.8E-07 9.6E-12 69.6 7.1 43 22-68 17-59 (207)
13 1rj9_A FTSY, signal recognitio 98.5 1.9E-07 6.5E-12 76.3 6.5 44 23-66 99-142 (304)
14 1yrb_A ATP(GTP)binding protein 98.4 6.1E-07 2.1E-11 69.5 7.7 56 16-72 3-59 (262)
15 3b9q_A Chloroplast SRP recepto 98.4 3.4E-07 1.2E-11 74.7 6.0 44 23-66 97-140 (302)
16 3e70_C DPA, signal recognition 98.4 3.2E-07 1.1E-11 75.8 5.9 44 23-66 126-169 (328)
17 1xjc_A MOBB protein homolog; s 98.4 3E-07 1E-11 69.7 5.1 41 25-65 3-43 (169)
18 1nn5_A Similar to deoxythymidy 98.4 3.2E-07 1.1E-11 68.9 4.8 39 21-59 4-42 (215)
19 1kht_A Adenylate kinase; phosp 98.3 3.4E-07 1.2E-11 67.3 4.1 40 26-65 3-42 (192)
20 2og2_A Putative signal recogni 98.3 5.8E-07 2E-11 75.3 5.9 44 23-66 154-197 (359)
21 1vma_A Cell division protein F 98.3 6.2E-07 2.1E-11 73.4 5.9 44 23-66 101-144 (306)
22 4eun_A Thermoresistant glucoki 98.3 5.4E-07 1.8E-11 68.0 4.8 45 16-65 19-63 (200)
23 2wwf_A Thymidilate kinase, put 98.3 7.7E-07 2.6E-11 66.7 5.3 36 24-59 8-43 (212)
24 2yvu_A Probable adenylyl-sulfa 98.3 6.2E-07 2.1E-11 66.6 4.7 42 24-65 11-52 (186)
25 1np6_A Molybdopterin-guanine d 98.3 7.3E-07 2.5E-11 67.4 5.0 41 25-65 5-45 (174)
26 3dm5_A SRP54, signal recogniti 98.3 1.4E-06 4.9E-11 74.9 7.1 44 24-67 98-141 (443)
27 2yhs_A FTSY, cell division pro 98.3 1E-06 3.5E-11 77.0 6.0 44 23-66 290-333 (503)
28 3d3q_A TRNA delta(2)-isopenten 98.3 1E-06 3.5E-11 73.5 5.8 40 26-70 7-48 (340)
29 3uie_A Adenylyl-sulfate kinase 98.2 8E-07 2.7E-11 67.0 4.5 44 23-66 22-65 (200)
30 1nks_A Adenylate kinase; therm 98.2 6.8E-07 2.3E-11 65.6 4.0 38 27-64 2-39 (194)
31 3kl4_A SRP54, signal recogniti 98.2 1.3E-06 4.5E-11 74.9 6.1 44 23-66 94-137 (433)
32 2px0_A Flagellar biosynthesis 98.2 1.2E-06 4E-11 71.2 5.3 43 24-66 103-146 (296)
33 1zu4_A FTSY; GTPase, signal re 98.2 1.6E-06 5.6E-11 71.2 5.9 44 23-66 102-145 (320)
34 3t61_A Gluconokinase; PSI-biol 98.2 9E-07 3.1E-11 66.5 3.8 37 25-66 17-53 (202)
35 1qf9_A UMP/CMP kinase, protein 98.2 1.3E-06 4.5E-11 64.0 4.6 40 21-65 1-40 (194)
36 1knq_A Gluconate kinase; ALFA/ 98.2 2.4E-06 8.2E-11 62.5 5.5 37 24-65 6-42 (175)
37 3tr0_A Guanylate kinase, GMP k 98.2 1.2E-06 4.2E-11 65.3 3.9 27 25-51 6-32 (205)
38 2j41_A Guanylate kinase; GMP, 98.2 1.1E-06 3.9E-11 65.4 3.7 28 24-51 4-31 (207)
39 2qm8_A GTPase/ATPase; G protei 98.2 2E-06 6.7E-11 70.9 5.3 43 24-66 53-95 (337)
40 3a4m_A L-seryl-tRNA(SEC) kinas 98.2 1.8E-06 6.1E-11 68.1 4.8 42 25-66 3-44 (260)
41 1ls1_A Signal recognition part 98.2 3.6E-06 1.2E-10 68.1 6.7 42 25-66 97-138 (295)
42 1qhx_A CPT, protein (chloramph 98.1 1.5E-06 5.1E-11 63.6 3.9 38 25-65 2-39 (178)
43 1htw_A HI0065; nucleotide-bind 98.1 2.5E-06 8.6E-11 63.4 5.0 36 24-60 31-66 (158)
44 3tif_A Uncharacterized ABC tra 98.1 7.6E-07 2.6E-11 69.9 2.1 35 25-59 30-64 (235)
45 2w0m_A SSO2452; RECA, SSPF, un 98.1 2.2E-06 7.7E-11 64.3 4.6 40 25-64 22-61 (235)
46 3kb2_A SPBC2 prophage-derived 98.1 1.8E-06 6.3E-11 62.3 3.9 34 27-65 2-35 (173)
47 1kgd_A CASK, peripheral plasma 98.1 1.6E-06 5.6E-11 64.5 3.7 27 25-51 4-30 (180)
48 2f1r_A Molybdopterin-guanine d 98.1 1.2E-06 4E-11 66.0 2.9 40 27-66 3-42 (171)
49 2vp4_A Deoxynucleoside kinase; 98.1 2.2E-06 7.5E-11 66.2 4.4 36 24-63 18-53 (230)
50 2plr_A DTMP kinase, probable t 98.1 3.6E-06 1.2E-10 62.7 5.4 30 25-54 3-32 (213)
51 2www_A Methylmalonic aciduria 98.1 3.8E-06 1.3E-10 69.4 6.0 43 25-67 73-115 (349)
52 3iij_A Coilin-interacting nucl 98.1 2E-06 6.7E-11 63.4 3.9 39 22-65 7-45 (180)
53 3a00_A Guanylate kinase, GMP k 98.1 1.3E-06 4.6E-11 65.2 3.0 27 26-52 1-27 (186)
54 1mv5_A LMRA, multidrug resista 98.1 1.7E-06 5.9E-11 68.0 3.7 38 24-61 26-63 (243)
55 1kag_A SKI, shikimate kinase I 98.1 1.6E-06 5.6E-11 63.1 3.3 26 26-51 4-29 (173)
56 2eyu_A Twitching motility prot 98.1 2.8E-06 9.6E-11 67.7 4.8 41 24-64 23-64 (261)
57 2pez_A Bifunctional 3'-phospho 98.1 4.1E-06 1.4E-10 61.7 5.3 37 25-61 4-40 (179)
58 1ukz_A Uridylate kinase; trans 98.1 3.3E-06 1.1E-10 63.2 4.8 38 23-65 12-49 (203)
59 1tev_A UMP-CMP kinase; ploop, 98.1 2.6E-06 9E-11 62.5 4.1 36 25-65 2-37 (196)
60 1zp6_A Hypothetical protein AT 98.1 3.5E-06 1.2E-10 62.2 4.8 26 24-49 7-32 (191)
61 2ffh_A Protein (FFH); SRP54, s 98.1 6E-06 2.1E-10 70.6 6.8 42 25-66 97-138 (425)
62 4g1u_C Hemin import ATP-bindin 98.1 1.1E-06 3.9E-11 70.3 2.1 37 25-61 36-72 (266)
63 1gvn_B Zeta; postsegregational 98.1 2.6E-06 8.9E-11 68.6 4.3 42 23-67 30-71 (287)
64 2z0h_A DTMP kinase, thymidylat 98.1 3.3E-06 1.1E-10 62.4 4.4 31 28-58 2-32 (197)
65 1ly1_A Polynucleotide kinase; 98.1 3E-06 1E-10 61.6 4.1 37 26-66 2-38 (181)
66 1znw_A Guanylate kinase, GMP k 98.1 2.4E-06 8.3E-11 64.8 3.7 29 23-51 17-45 (207)
67 1gtv_A TMK, thymidylate kinase 98.1 6.5E-07 2.2E-11 67.2 0.5 36 28-63 2-37 (214)
68 2pcj_A ABC transporter, lipopr 98.1 1.1E-06 3.9E-11 68.3 1.8 36 25-60 29-64 (224)
69 1uf9_A TT1252 protein; P-loop, 98.0 2.6E-06 8.8E-11 63.3 3.7 37 24-66 6-42 (203)
70 3tau_A Guanylate kinase, GMP k 98.0 2.8E-06 9.7E-11 64.6 3.9 29 24-52 6-34 (208)
71 2pbr_A DTMP kinase, thymidylat 98.0 2.7E-06 9.3E-11 62.5 3.6 34 28-63 2-35 (195)
72 2xxa_A Signal recognition part 98.0 5.9E-06 2E-10 70.6 6.2 44 24-67 98-142 (433)
73 2cdn_A Adenylate kinase; phosp 98.0 3.7E-06 1.3E-10 63.0 4.4 38 22-64 16-53 (201)
74 3gfo_A Cobalt import ATP-bindi 98.0 9.9E-07 3.4E-11 71.1 1.2 37 25-61 33-69 (275)
75 1b0u_A Histidine permease; ABC 98.0 1.5E-06 5.1E-11 69.3 2.2 36 25-60 31-66 (262)
76 1m7g_A Adenylylsulfate kinase; 98.0 3E-06 1E-10 64.4 3.7 43 24-66 23-66 (211)
77 2onk_A Molybdate/tungstate ABC 98.0 1.7E-06 5.8E-11 68.3 2.4 34 27-60 25-58 (240)
78 1z6g_A Guanylate kinase; struc 98.0 3.5E-06 1.2E-10 64.9 4.1 36 24-63 21-56 (218)
79 1cke_A CK, MSSA, protein (cyti 98.0 3.6E-06 1.2E-10 63.8 4.1 25 26-50 5-29 (227)
80 3vaa_A Shikimate kinase, SK; s 98.0 3.6E-06 1.2E-10 63.4 4.0 51 10-65 8-59 (199)
81 2v3c_C SRP54, signal recogniti 98.0 2E-06 6.7E-11 73.5 2.7 43 24-66 97-139 (432)
82 2rhm_A Putative kinase; P-loop 98.0 4.3E-06 1.5E-10 61.5 4.2 37 24-65 3-39 (193)
83 2ehv_A Hypothetical protein PH 98.0 5.1E-06 1.7E-10 63.4 4.7 39 25-63 29-68 (251)
84 4gp7_A Metallophosphoesterase; 98.0 4.9E-06 1.7E-10 61.5 4.4 21 25-45 8-28 (171)
85 2cbz_A Multidrug resistance-as 98.0 1.5E-06 5.1E-11 68.3 1.6 42 25-66 30-77 (237)
86 1g6h_A High-affinity branched- 98.0 1.7E-06 5.9E-11 68.6 2.0 35 25-59 32-66 (257)
87 1lvg_A Guanylate kinase, GMP k 98.0 3E-06 1E-10 64.2 3.1 27 25-51 3-29 (198)
88 1j8m_F SRP54, signal recogniti 98.0 7.4E-06 2.5E-10 66.6 5.7 42 25-66 97-138 (297)
89 2olj_A Amino acid ABC transpor 98.0 1.9E-06 6.6E-11 69.0 2.2 36 25-60 49-84 (263)
90 2ff7_A Alpha-hemolysin translo 98.0 1.8E-06 6.2E-11 68.3 2.0 35 25-59 34-68 (247)
91 2pze_A Cystic fibrosis transme 98.0 1.9E-06 6.6E-11 67.2 2.0 41 25-65 33-79 (229)
92 1ji0_A ABC transporter; ATP bi 98.0 1.9E-06 6.5E-11 67.7 2.0 35 25-59 31-65 (240)
93 2ixe_A Antigen peptide transpo 98.0 2.1E-06 7.2E-11 68.8 2.1 35 25-59 44-78 (271)
94 3p32_A Probable GTPase RV1496/ 98.0 6.7E-06 2.3E-10 67.8 5.2 45 23-67 76-120 (355)
95 1vpl_A ABC transporter, ATP-bi 98.0 2.2E-06 7.4E-11 68.3 2.2 36 25-60 40-75 (256)
96 2qor_A Guanylate kinase; phosp 98.0 3.4E-06 1.2E-10 63.7 3.1 27 25-51 11-37 (204)
97 3exa_A TRNA delta(2)-isopenten 98.0 7.8E-06 2.7E-10 67.8 5.5 41 25-70 2-44 (322)
98 2ze6_A Isopentenyl transferase 98.0 6.5E-06 2.2E-10 64.9 4.8 34 27-65 2-35 (253)
99 3ney_A 55 kDa erythrocyte memb 98.0 5E-06 1.7E-10 64.2 4.0 37 14-51 8-44 (197)
100 2j37_W Signal recognition part 98.0 7.5E-06 2.6E-10 71.4 5.5 43 24-66 99-141 (504)
101 2yz2_A Putative ABC transporte 98.0 2.3E-06 8E-11 68.2 2.1 34 25-58 32-65 (266)
102 2bbw_A Adenylate kinase 4, AK4 98.0 5E-06 1.7E-10 64.5 4.0 27 25-51 26-52 (246)
103 2p5t_B PEZT; postsegregational 98.0 6.7E-06 2.3E-10 64.4 4.7 44 22-68 28-71 (253)
104 2ihy_A ABC transporter, ATP-bi 98.0 2.3E-06 8E-11 69.0 2.1 37 25-61 46-82 (279)
105 3cm0_A Adenylate kinase; ATP-b 98.0 5.4E-06 1.8E-10 60.9 3.9 34 25-63 3-36 (186)
106 1sgw_A Putative ABC transporte 98.0 1.9E-06 6.6E-11 67.0 1.4 35 25-59 34-68 (214)
107 3ec2_A DNA replication protein 97.9 6.6E-06 2.3E-10 60.6 4.2 38 26-63 38-76 (180)
108 2p67_A LAO/AO transport system 97.9 9E-06 3.1E-10 66.7 5.3 43 24-66 54-96 (341)
109 1s96_A Guanylate kinase, GMP k 97.9 5.6E-06 1.9E-10 64.4 3.8 28 24-51 14-41 (219)
110 2c95_A Adenylate kinase 1; tra 97.9 5.9E-06 2E-10 61.0 3.8 35 25-64 8-42 (196)
111 2grj_A Dephospho-COA kinase; T 97.9 2.8E-06 9.4E-11 65.0 2.0 39 25-68 11-49 (192)
112 3lw7_A Adenylate kinase relate 97.9 5.4E-06 1.9E-10 59.2 3.4 32 27-64 2-33 (179)
113 2kjq_A DNAA-related protein; s 97.9 8.8E-06 3E-10 59.5 4.4 40 25-64 35-74 (149)
114 1cr0_A DNA primase/helicase; R 97.9 9.8E-06 3.4E-10 64.4 5.0 40 25-64 34-74 (296)
115 2if2_A Dephospho-COA kinase; a 97.9 5.2E-06 1.8E-10 62.1 3.1 36 27-68 2-37 (204)
116 2vli_A Antibiotic resistance p 97.9 4.1E-06 1.4E-10 61.3 2.4 27 25-51 4-30 (183)
117 2iyv_A Shikimate kinase, SK; t 97.9 4.1E-06 1.4E-10 61.7 2.5 35 27-66 3-37 (184)
118 3tui_C Methionine import ATP-b 97.9 3.1E-06 1.1E-10 71.2 2.0 37 25-61 53-89 (366)
119 2v54_A DTMP kinase, thymidylat 97.9 7.2E-06 2.5E-10 61.0 3.8 26 25-50 3-28 (204)
120 1ye8_A Protein THEP1, hypothet 97.9 7.2E-06 2.5E-10 61.7 3.8 24 28-51 2-25 (178)
121 3trf_A Shikimate kinase, SK; a 97.9 7.4E-06 2.5E-10 60.2 3.8 35 26-65 5-39 (185)
122 3zvl_A Bifunctional polynucleo 97.9 1.3E-05 4.5E-10 67.6 5.7 40 21-65 253-292 (416)
123 1y63_A LMAJ004144AAA protein; 97.9 9E-06 3.1E-10 60.5 4.1 41 22-66 6-46 (184)
124 2qi9_C Vitamin B12 import ATP- 97.9 3.6E-06 1.2E-10 66.8 2.0 34 25-59 25-58 (249)
125 4a74_A DNA repair and recombin 97.9 1.2E-05 4.2E-10 60.5 4.8 28 25-52 24-51 (231)
126 3tlx_A Adenylate kinase 2; str 97.9 1E-05 3.5E-10 63.2 4.5 36 24-64 27-62 (243)
127 3ld9_A DTMP kinase, thymidylat 97.9 8.6E-06 2.9E-10 64.0 4.1 46 19-64 14-60 (223)
128 3fvq_A Fe(3+) IONS import ATP- 97.9 3.3E-06 1.1E-10 70.8 1.7 35 25-59 29-63 (359)
129 3sop_A Neuronal-specific septi 97.9 7.3E-06 2.5E-10 65.6 3.7 33 27-59 3-35 (270)
130 2bwj_A Adenylate kinase 5; pho 97.9 8.2E-06 2.8E-10 60.3 3.6 37 25-66 11-47 (199)
131 2axn_A 6-phosphofructo-2-kinas 97.9 1.7E-05 5.8E-10 69.1 6.1 48 20-67 29-76 (520)
132 4eaq_A DTMP kinase, thymidylat 97.9 1.8E-05 6.2E-10 61.6 5.7 35 23-58 23-57 (229)
133 2dr3_A UPF0273 protein PH0284; 97.9 1.4E-05 4.8E-10 60.7 4.9 41 25-65 22-62 (247)
134 1jjv_A Dephospho-COA kinase; P 97.9 8.8E-06 3E-10 61.1 3.7 36 26-67 2-37 (206)
135 3nh6_A ATP-binding cassette SU 97.9 2.3E-06 7.8E-11 70.2 0.5 35 25-59 79-113 (306)
136 3umf_A Adenylate kinase; rossm 97.9 1.3E-05 4.6E-10 62.6 4.8 31 21-51 24-54 (217)
137 4e22_A Cytidylate kinase; P-lo 97.9 9.5E-06 3.3E-10 63.7 4.0 26 25-50 26-51 (252)
138 2d2e_A SUFC protein; ABC-ATPas 97.9 4.2E-06 1.4E-10 66.1 1.9 35 25-59 28-64 (250)
139 4edh_A DTMP kinase, thymidylat 97.9 1.7E-05 5.9E-10 61.4 5.4 37 24-60 4-40 (213)
140 3lnc_A Guanylate kinase, GMP k 97.9 5.2E-06 1.8E-10 63.7 2.3 27 25-51 26-53 (231)
141 2bdt_A BH3686; alpha-beta prot 97.9 8.9E-06 3.1E-10 60.2 3.5 23 26-48 2-24 (189)
142 3rlf_A Maltose/maltodextrin im 97.9 5.6E-06 1.9E-10 69.9 2.7 35 25-59 28-62 (381)
143 2yyz_A Sugar ABC transporter, 97.8 5.7E-06 1.9E-10 69.3 2.6 35 25-59 28-62 (359)
144 1p9r_A General secretion pathw 97.8 1.9E-05 6.7E-10 67.1 5.9 40 24-63 165-204 (418)
145 2ghi_A Transport protein; mult 97.8 4.9E-06 1.7E-10 66.2 2.0 34 25-59 45-78 (260)
146 1vht_A Dephospho-COA kinase; s 97.8 1.3E-05 4.5E-10 60.7 4.2 37 25-67 3-39 (218)
147 2it1_A 362AA long hypothetical 97.8 6.3E-06 2.2E-10 69.0 2.7 35 25-59 28-62 (362)
148 1v43_A Sugar-binding transport 97.8 6.6E-06 2.3E-10 69.2 2.7 35 25-59 36-70 (372)
149 2jaq_A Deoxyguanosine kinase; 97.8 1.1E-05 3.9E-10 59.6 3.6 24 28-51 2-25 (205)
150 2nq2_C Hypothetical ABC transp 97.8 4.9E-06 1.7E-10 66.0 1.8 41 25-65 30-76 (253)
151 1z47_A CYSA, putative ABC-tran 97.8 6.5E-06 2.2E-10 68.8 2.5 35 25-59 40-74 (355)
152 1zak_A Adenylate kinase; ATP:A 97.8 9.7E-06 3.3E-10 61.7 3.2 28 24-51 3-30 (222)
153 1g29_1 MALK, maltose transport 97.8 6.8E-06 2.3E-10 69.0 2.5 35 25-59 28-62 (372)
154 3d31_A Sulfate/molybdate ABC t 97.8 5.3E-06 1.8E-10 69.1 1.7 35 25-59 25-59 (348)
155 3foz_A TRNA delta(2)-isopenten 97.8 2.2E-05 7.4E-10 65.0 5.4 38 24-66 8-45 (316)
156 1aky_A Adenylate kinase; ATP:A 97.8 1.4E-05 4.8E-10 60.7 3.9 37 25-66 3-39 (220)
157 3bos_A Putative DNA replicatio 97.8 1.8E-05 6.2E-10 59.4 4.5 42 25-66 51-92 (242)
158 2v9p_A Replication protein E1; 97.8 1.1E-05 3.7E-10 66.2 3.4 26 25-50 125-150 (305)
159 3b85_A Phosphate starvation-in 97.8 8.1E-06 2.8E-10 63.0 2.5 34 25-59 21-54 (208)
160 2f6r_A COA synthase, bifunctio 97.8 1.8E-05 6.1E-10 63.3 4.6 40 22-67 71-110 (281)
161 2zu0_C Probable ATP-dependent 97.8 6.8E-06 2.3E-10 65.6 2.1 26 25-50 45-70 (267)
162 1zd8_A GTP:AMP phosphotransfer 97.8 1.2E-05 4.1E-10 61.5 3.4 36 24-64 5-40 (227)
163 2cvh_A DNA repair and recombin 97.8 1.5E-05 5.1E-10 59.7 3.8 37 25-64 19-55 (220)
164 2gza_A Type IV secretion syste 97.8 8.9E-06 3E-10 67.5 2.7 36 25-60 174-209 (361)
165 2bbs_A Cystic fibrosis transme 97.8 5.2E-06 1.8E-10 67.4 1.3 41 25-65 63-109 (290)
166 2npi_A Protein CLP1; CLP1-PCF1 97.8 1.2E-05 4E-10 69.2 3.5 40 25-64 137-177 (460)
167 2ewv_A Twitching motility prot 97.8 1.5E-05 5.2E-10 66.4 4.1 38 24-61 134-172 (372)
168 1e6c_A Shikimate kinase; phosp 97.8 1.4E-05 4.9E-10 57.8 3.4 35 27-66 3-37 (173)
169 3crm_A TRNA delta(2)-isopenten 97.8 2.2E-05 7.5E-10 65.0 4.9 37 25-66 4-40 (323)
170 1oxx_K GLCV, glucose, ABC tran 97.8 5E-06 1.7E-10 69.3 1.0 35 25-59 30-64 (353)
171 3eph_A TRNA isopentenyltransfe 97.8 2.9E-05 1E-09 66.2 5.7 40 26-70 2-43 (409)
172 1ak2_A Adenylate kinase isoenz 97.8 1.9E-05 6.6E-10 60.8 4.2 36 24-64 14-49 (233)
173 1ltq_A Polynucleotide kinase; 97.8 1.8E-05 6.2E-10 62.6 4.0 36 26-65 2-37 (301)
174 2w58_A DNAI, primosome compone 97.7 2.9E-05 1E-09 57.9 4.9 38 26-63 54-91 (202)
175 2pjz_A Hypothetical protein ST 97.7 8.3E-06 2.8E-10 65.2 1.9 33 26-59 30-62 (263)
176 2i3b_A HCR-ntpase, human cance 97.7 1.4E-05 4.7E-10 60.9 3.0 28 27-54 2-29 (189)
177 3ake_A Cytidylate kinase; CMP 97.7 2.3E-05 7.9E-10 58.2 4.2 35 28-67 4-38 (208)
178 3fb4_A Adenylate kinase; psych 97.7 1.8E-05 6E-10 59.7 3.6 32 28-64 2-33 (216)
179 3a8t_A Adenylate isopentenyltr 97.7 2.5E-05 8.6E-10 65.1 4.8 38 24-66 38-75 (339)
180 3ozx_A RNAse L inhibitor; ATP 97.7 1.7E-05 5.7E-10 69.5 3.8 49 9-57 8-56 (538)
181 2wsm_A Hydrogenase expression/ 97.7 4E-05 1.4E-09 57.5 5.5 40 25-65 29-68 (221)
182 3end_A Light-independent proto 97.7 3.7E-05 1.3E-09 61.3 5.5 45 22-66 37-81 (307)
183 3jvv_A Twitching mobility prot 97.7 2.6E-05 8.9E-10 65.0 4.8 35 25-59 122-157 (356)
184 3r20_A Cytidylate kinase; stru 97.7 2E-05 6.9E-10 62.3 3.9 39 24-67 7-45 (233)
185 3lv8_A DTMP kinase, thymidylat 97.7 2.9E-05 9.9E-10 61.3 4.7 38 22-59 23-60 (236)
186 2pt5_A Shikimate kinase, SK; a 97.7 2.5E-05 8.4E-10 56.4 3.7 33 28-65 2-34 (168)
187 3gd7_A Fusion complex of cysti 97.7 1E-05 3.5E-10 68.4 1.9 34 25-59 46-79 (390)
188 3b5x_A Lipid A export ATP-bind 97.7 1.8E-05 6.1E-10 69.3 3.4 35 25-59 368-402 (582)
189 3fwy_A Light-independent proto 97.7 4.2E-05 1.4E-09 62.6 5.4 44 24-67 46-89 (314)
190 3dl0_A Adenylate kinase; phosp 97.7 2.1E-05 7.3E-10 59.3 3.4 34 28-66 2-35 (216)
191 1m8p_A Sulfate adenylyltransfe 97.7 2.6E-05 8.9E-10 68.8 4.3 44 22-65 392-436 (573)
192 2gks_A Bifunctional SAT/APS ki 97.7 2.5E-05 8.6E-10 68.5 4.2 43 23-65 369-411 (546)
193 2pt7_A CAG-ALFA; ATPase, prote 97.7 1.5E-05 5.1E-10 65.5 2.6 36 26-61 171-206 (330)
194 1via_A Shikimate kinase; struc 97.7 2.6E-05 9E-10 57.1 3.6 34 28-66 6-39 (175)
195 3cr8_A Sulfate adenylyltranfer 97.7 2.2E-05 7.4E-10 69.1 3.6 42 24-65 367-409 (552)
196 3euj_A Chromosome partition pr 97.7 3.3E-05 1.1E-09 67.0 4.5 38 27-64 30-67 (483)
197 1zuh_A Shikimate kinase; alpha 97.6 3.5E-05 1.2E-09 55.9 3.9 34 27-65 8-41 (168)
198 3con_A GTPase NRAS; structural 97.6 2.7E-05 9.1E-10 56.9 3.2 34 16-49 11-44 (190)
199 3v9p_A DTMP kinase, thymidylat 97.6 2.8E-05 9.6E-10 61.1 3.4 39 22-60 21-63 (227)
200 1q3t_A Cytidylate kinase; nucl 97.6 4.1E-05 1.4E-09 59.0 4.1 41 21-66 11-51 (236)
201 1ex7_A Guanylate kinase; subst 97.6 3.4E-05 1.2E-09 58.9 3.3 24 28-51 3-26 (186)
202 1nij_A Hypothetical protein YJ 97.6 4.4E-05 1.5E-09 62.0 4.1 38 25-64 3-40 (318)
203 3j16_B RLI1P; ribosome recycli 97.6 4E-05 1.4E-09 68.1 4.1 40 18-57 95-134 (608)
204 3b60_A Lipid A export ATP-bind 97.6 1.6E-05 5.6E-10 69.5 1.5 34 25-58 368-401 (582)
205 1nlf_A Regulatory protein REPA 97.6 7E-05 2.4E-09 59.1 5.0 28 25-52 29-56 (279)
206 1n0w_A DNA repair protein RAD5 97.6 5.6E-05 1.9E-09 57.3 4.3 40 25-64 23-68 (243)
207 1jbk_A CLPB protein; beta barr 97.6 6.2E-05 2.1E-09 53.9 4.4 28 25-52 42-69 (195)
208 4tmk_A Protein (thymidylate ki 97.6 6.7E-05 2.3E-09 58.2 4.7 31 25-55 2-32 (213)
209 2oap_1 GSPE-2, type II secreti 97.6 2.9E-05 9.9E-10 67.6 2.7 35 25-59 259-293 (511)
210 3be4_A Adenylate kinase; malar 97.5 4.2E-05 1.4E-09 58.3 3.2 34 26-64 5-38 (217)
211 1cp2_A CP2, nitrogenase iron p 97.5 9.3E-05 3.2E-09 57.5 5.2 41 27-67 2-42 (269)
212 3hr8_A Protein RECA; alpha and 97.5 9.8E-05 3.4E-09 61.7 5.7 40 25-64 60-99 (356)
213 1wcv_1 SOJ, segregation protei 97.5 5.7E-05 2E-09 58.8 3.9 45 21-65 1-46 (257)
214 1g8f_A Sulfate adenylyltransfe 97.5 7.8E-05 2.7E-09 65.1 5.1 43 22-64 391-435 (511)
215 2a9k_A RAS-related protein RAL 97.5 5.6E-05 1.9E-09 54.3 3.5 26 24-49 16-41 (187)
216 3tkl_A RAS-related protein RAB 97.5 5.5E-05 1.9E-09 55.1 3.5 38 12-49 2-39 (196)
217 3ihw_A Centg3; RAS, centaurin, 97.5 6.8E-05 2.3E-09 55.3 4.0 32 18-49 12-43 (184)
218 1tq4_A IIGP1, interferon-induc 97.5 5.5E-05 1.9E-09 64.4 3.8 34 25-58 68-101 (413)
219 3ozx_A RNAse L inhibitor; ATP 97.5 3.9E-05 1.3E-09 67.1 3.0 34 25-58 293-326 (538)
220 2xb4_A Adenylate kinase; ATP-b 97.5 6E-05 2E-09 57.8 3.7 32 28-64 2-33 (223)
221 3kjh_A CO dehydrogenase/acetyl 97.5 6.4E-05 2.2E-09 57.0 3.8 37 29-65 3-39 (254)
222 1x6v_B Bifunctional 3'-phospho 97.5 8.6E-05 3E-09 66.4 5.1 40 24-63 50-89 (630)
223 4a82_A Cystic fibrosis transme 97.5 1.3E-05 4.6E-10 70.1 -0.1 34 25-58 366-399 (578)
224 3qf4_A ABC transporter, ATP-bi 97.5 2.1E-05 7.1E-10 69.2 1.0 35 25-59 368-402 (587)
225 1yqt_A RNAse L inhibitor; ATP- 97.5 5.1E-05 1.7E-09 66.2 3.4 40 25-64 311-356 (538)
226 1e4v_A Adenylate kinase; trans 97.5 6E-05 2E-09 57.1 3.4 32 28-64 2-33 (214)
227 2hf9_A Probable hydrogenase ni 97.5 0.00011 3.7E-09 55.3 4.9 39 25-64 37-75 (226)
228 1lw7_A Transcriptional regulat 97.5 7E-05 2.4E-09 61.6 4.0 29 26-54 170-198 (365)
229 3c5c_A RAS-like protein 12; GD 97.5 6.8E-05 2.3E-09 55.2 3.6 38 12-49 6-44 (187)
230 2yl4_A ATP-binding cassette SU 97.5 1.6E-05 5.6E-10 69.7 0.2 33 25-57 369-401 (595)
231 3kkq_A RAS-related protein M-R 97.5 8.3E-05 2.8E-09 53.7 3.9 29 21-49 13-41 (183)
232 2h92_A Cytidylate kinase; ross 97.5 5.7E-05 2E-09 56.9 3.2 38 25-67 2-39 (219)
233 3qf4_B Uncharacterized ABC tra 97.5 1.9E-05 6.5E-10 69.5 0.4 33 25-57 380-412 (598)
234 2zr9_A Protein RECA, recombina 97.5 0.0001 3.4E-09 61.1 4.7 41 25-65 60-100 (349)
235 2ocp_A DGK, deoxyguanosine kin 97.5 8E-05 2.7E-09 57.4 3.9 27 25-51 1-27 (241)
236 2p65_A Hypothetical protein PF 97.5 8E-05 2.7E-09 53.5 3.6 28 25-52 42-69 (187)
237 2afh_E Nitrogenase iron protei 97.5 0.00013 4.5E-09 57.6 5.2 41 27-67 3-43 (289)
238 1z0f_A RAB14, member RAS oncog 97.5 7.5E-05 2.5E-09 53.3 3.4 28 22-49 11-38 (179)
239 3bk7_A ABC transporter ATP-bin 97.5 6.1E-05 2.1E-09 66.8 3.4 33 25-57 381-413 (607)
240 3sr0_A Adenylate kinase; phosp 97.4 8.3E-05 2.8E-09 57.3 3.6 24 28-51 2-25 (206)
241 4fcw_A Chaperone protein CLPB; 97.4 0.00013 4.5E-09 57.4 4.8 39 27-65 48-86 (311)
242 1gwn_A RHO-related GTP-binding 97.4 7.8E-05 2.7E-09 56.2 3.3 41 9-49 11-51 (205)
243 3nwj_A ATSK2; P loop, shikimat 97.4 7.4E-05 2.5E-09 59.3 3.3 35 26-65 48-82 (250)
244 1bif_A 6-phosphofructo-2-kinas 97.4 0.0001 3.5E-09 62.8 4.3 43 22-64 35-77 (469)
245 1p5z_B DCK, deoxycytidine kina 97.4 4.3E-05 1.5E-09 59.8 1.9 36 16-51 12-49 (263)
246 3kta_A Chromosome segregation 97.4 9E-05 3.1E-09 54.3 3.5 25 28-52 28-52 (182)
247 4dzz_A Plasmid partitioning pr 97.4 0.00018 6.1E-09 53.2 5.1 40 27-66 2-42 (206)
248 2yv5_A YJEQ protein; hydrolase 97.4 9.5E-05 3.3E-09 59.8 3.8 34 25-59 164-197 (302)
249 3k9g_A PF-32 protein; ssgcid, 97.4 0.00012 4.2E-09 56.9 4.2 45 21-66 22-67 (267)
250 1yqt_A RNAse L inhibitor; ATP- 97.4 8.7E-05 3E-09 64.8 3.7 33 24-56 45-77 (538)
251 1zd9_A ADP-ribosylation factor 97.4 9.3E-05 3.2E-09 54.3 3.3 30 20-49 16-45 (188)
252 3clv_A RAB5 protein, putative; 97.4 0.00017 5.7E-09 52.1 4.6 29 21-49 2-30 (208)
253 3t15_A Ribulose bisphosphate c 97.4 0.00021 7.3E-09 57.1 5.5 37 22-61 32-68 (293)
254 1oix_A RAS-related protein RAB 97.4 0.0001 3.5E-09 54.6 3.4 26 26-51 29-54 (191)
255 3lxx_A GTPase IMAP family memb 97.4 9.4E-05 3.2E-09 56.8 3.3 31 20-50 23-53 (239)
256 1l8q_A Chromosomal replication 97.4 0.00014 4.9E-09 58.2 4.4 39 26-64 37-75 (324)
257 2h17_A ADP-ribosylation factor 97.4 9E-05 3.1E-09 53.9 2.9 30 19-48 14-43 (181)
258 2r8r_A Sensor protein; KDPD, P 97.4 0.00027 9.2E-09 55.9 5.9 40 26-65 6-45 (228)
259 1u0l_A Probable GTPase ENGC; p 97.4 6.8E-05 2.3E-09 60.5 2.4 35 25-59 168-202 (301)
260 1ixz_A ATP-dependent metallopr 97.4 0.00011 3.9E-09 56.7 3.6 24 28-51 51-74 (254)
261 2chg_A Replication factor C sm 97.4 9E-05 3.1E-09 54.3 2.9 35 28-62 40-74 (226)
262 3syl_A Protein CBBX; photosynt 97.3 0.0003 1E-08 55.4 5.9 31 24-54 65-95 (309)
263 2r2a_A Uncharacterized protein 97.3 0.00026 8.9E-09 54.3 5.3 40 26-65 5-50 (199)
264 2fv8_A H6, RHO-related GTP-bin 97.3 9.5E-05 3.2E-09 55.1 2.7 40 10-49 9-48 (207)
265 2obl_A ESCN; ATPase, hydrolase 97.3 0.00011 3.8E-09 60.9 3.4 30 25-54 70-99 (347)
266 2h57_A ADP-ribosylation factor 97.3 0.00011 3.7E-09 53.8 2.9 37 14-50 9-45 (190)
267 4ag6_A VIRB4 ATPase, type IV s 97.3 0.00023 7.9E-09 58.8 5.2 37 25-61 34-70 (392)
268 2gf9_A RAS-related protein RAB 97.3 0.00017 5.8E-09 52.7 3.9 27 23-49 19-45 (189)
269 4bas_A ADP-ribosylation factor 97.3 0.00013 4.4E-09 53.3 3.3 29 20-48 11-39 (199)
270 1qhl_A Protein (cell division 97.3 2E-05 6.9E-10 61.9 -1.2 33 27-59 28-60 (227)
271 3bh0_A DNAB-like replicative h 97.3 0.00022 7.6E-09 57.8 4.9 40 25-64 67-106 (315)
272 1pzn_A RAD51, DNA repair and r 97.3 0.00021 7.3E-09 58.9 4.8 26 25-50 130-155 (349)
273 3n70_A Transport activator; si 97.3 0.00025 8.5E-09 50.7 4.6 35 28-63 26-60 (145)
274 2x8a_A Nuclear valosin-contain 97.3 0.00014 4.9E-09 57.9 3.6 25 28-52 46-70 (274)
275 3cio_A ETK, tyrosine-protein k 97.3 0.00032 1.1E-08 56.6 5.7 45 24-68 102-147 (299)
276 2fg5_A RAB-22B, RAS-related pr 97.3 0.00013 4.3E-09 53.7 3.0 37 13-49 10-46 (192)
277 1u94_A RECA protein, recombina 97.3 0.00023 7.8E-09 59.2 4.9 40 25-64 62-101 (356)
278 1lv7_A FTSH; alpha/beta domain 97.3 0.00019 6.4E-09 55.6 4.1 26 26-51 45-70 (257)
279 1in4_A RUVB, holliday junction 97.3 0.00014 4.9E-09 59.0 3.6 26 26-51 51-76 (334)
280 3hjn_A DTMP kinase, thymidylat 97.3 0.00023 8E-09 54.1 4.6 34 28-61 2-35 (197)
281 1xx6_A Thymidine kinase; NESG, 97.3 0.00037 1.3E-08 53.2 5.6 43 24-66 6-50 (191)
282 3bfv_A CAPA1, CAPB2, membrane 97.3 0.00041 1.4E-08 55.2 6.0 44 24-67 80-124 (271)
283 2zts_A Putative uncharacterize 97.3 0.00025 8.4E-09 53.7 4.5 40 25-64 29-69 (251)
284 2gco_A H9, RHO-related GTP-bin 97.3 0.00029 1E-08 52.2 4.8 41 9-49 7-48 (201)
285 2f9l_A RAB11B, member RAS onco 97.3 0.0002 6.7E-09 53.1 3.7 25 26-50 5-29 (199)
286 1iy2_A ATP-dependent metallopr 97.3 0.00018 6.3E-09 56.5 3.8 24 28-51 75-98 (278)
287 3ug7_A Arsenical pump-driving 97.3 0.00039 1.3E-08 57.2 5.9 42 24-65 24-65 (349)
288 2a5j_A RAS-related protein RAB 97.3 0.00027 9.2E-09 51.8 4.4 25 25-49 20-44 (191)
289 1tf7_A KAIC; homohexamer, hexa 97.3 0.00028 9.4E-09 60.9 5.1 37 25-61 280-316 (525)
290 3q9l_A Septum site-determining 97.2 0.0004 1.4E-08 53.3 5.5 43 26-68 2-45 (260)
291 2dpy_A FLII, flagellum-specifi 97.2 0.00014 4.7E-09 62.2 3.1 37 25-61 156-192 (438)
292 2wjg_A FEOB, ferrous iron tran 97.2 0.00021 7.1E-09 51.8 3.6 24 25-48 6-29 (188)
293 3bk7_A ABC transporter ATP-bin 97.2 0.00014 4.7E-09 64.5 3.1 33 24-56 115-147 (607)
294 2orw_A Thymidine kinase; TMTK, 97.2 0.00026 8.8E-09 53.3 4.2 35 26-60 3-37 (184)
295 1tf7_A KAIC; homohexamer, hexa 97.2 0.00022 7.6E-09 61.5 4.3 35 25-59 38-74 (525)
296 3bwd_D RAC-like GTP-binding pr 97.2 0.00023 7.8E-09 51.1 3.7 29 21-49 3-31 (182)
297 1fnn_A CDC6P, cell division co 97.2 0.00037 1.3E-08 56.1 5.3 34 28-61 46-80 (389)
298 2b8t_A Thymidine kinase; deoxy 97.2 0.00039 1.3E-08 54.4 5.2 41 24-64 10-52 (223)
299 2qmh_A HPR kinase/phosphorylas 97.2 0.00025 8.5E-09 55.4 4.0 35 24-64 32-66 (205)
300 2qby_A CDC6 homolog 1, cell di 97.2 0.00018 6.2E-09 57.5 3.3 30 24-53 43-72 (386)
301 1svm_A Large T antigen; AAA+ f 97.2 0.00023 7.7E-09 59.8 4.0 26 25-50 168-193 (377)
302 2r6a_A DNAB helicase, replicat 97.2 0.00036 1.2E-08 59.2 5.2 40 25-64 202-242 (454)
303 2wji_A Ferrous iron transport 97.2 0.00023 7.9E-09 51.2 3.5 24 26-49 3-26 (165)
304 2rcn_A Probable GTPase ENGC; Y 97.2 0.00017 5.9E-09 60.3 3.2 35 25-59 214-249 (358)
305 1njg_A DNA polymerase III subu 97.2 0.00028 9.7E-09 52.0 4.0 28 26-53 45-72 (250)
306 3j16_B RLI1P; ribosome recycli 97.2 0.00018 6.3E-09 63.8 3.5 29 27-55 379-407 (608)
307 4hlc_A DTMP kinase, thymidylat 97.2 0.00043 1.5E-08 53.1 5.1 33 26-59 2-34 (205)
308 3ea0_A ATPase, para family; al 97.2 0.00052 1.8E-08 52.1 5.5 44 25-68 3-48 (245)
309 1pui_A ENGB, probable GTP-bind 97.2 0.00013 4.5E-09 54.0 2.1 28 23-50 23-50 (210)
310 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.00029 1E-08 54.0 4.1 37 24-63 37-73 (262)
311 3pqc_A Probable GTP-binding pr 97.2 0.00021 7.3E-09 51.7 3.2 26 24-49 21-46 (195)
312 1xp8_A RECA protein, recombina 97.2 0.00034 1.2E-08 58.4 4.7 42 25-66 73-114 (366)
313 3iqw_A Tail-anchored protein t 97.2 0.00054 1.8E-08 56.5 5.9 42 25-66 15-56 (334)
314 2oze_A ORF delta'; para, walke 97.2 0.00029 9.8E-09 55.7 4.1 41 26-66 34-77 (298)
315 2lkc_A Translation initiation 97.2 0.00036 1.2E-08 49.8 4.3 26 23-48 5-30 (178)
316 1x3s_A RAS-related protein RAB 97.2 0.00018 6.2E-09 52.2 2.7 25 25-49 14-38 (195)
317 2qgz_A Helicase loader, putati 97.2 0.00038 1.3E-08 56.3 4.9 38 26-63 152-190 (308)
318 3dz8_A RAS-related protein RAB 97.2 0.00011 3.7E-09 53.9 1.4 29 22-50 19-47 (191)
319 3oes_A GTPase rhebl1; small GT 97.2 0.00024 8.3E-09 52.5 3.3 29 22-50 20-48 (201)
320 3zq6_A Putative arsenical pump 97.2 0.00049 1.7E-08 55.8 5.5 40 26-65 14-53 (324)
321 1z06_A RAS-related protein RAB 97.2 0.00028 9.7E-09 51.5 3.6 25 24-48 18-42 (189)
322 1kao_A RAP2A; GTP-binding prot 97.1 0.00032 1.1E-08 49.1 3.7 25 25-49 2-26 (167)
323 3la6_A Tyrosine-protein kinase 97.1 0.00062 2.1E-08 54.7 5.8 44 24-67 90-134 (286)
324 2oil_A CATX-8, RAS-related pro 97.1 0.00029 1E-08 51.4 3.5 26 24-49 23-48 (193)
325 4f4c_A Multidrug resistance pr 97.1 8.1E-05 2.8E-09 71.1 0.6 33 25-57 1104-1136(1321)
326 4a1f_A DNAB helicase, replicat 97.1 0.00038 1.3E-08 57.7 4.6 41 25-65 45-85 (338)
327 2ce2_X GTPase HRAS; signaling 97.1 0.00031 1.1E-08 49.0 3.5 24 26-49 3-26 (166)
328 3b9p_A CG5977-PA, isoform A; A 97.1 0.0003 1E-08 55.3 3.7 27 25-51 53-79 (297)
329 2woo_A ATPase GET3; tail-ancho 97.1 0.00061 2.1E-08 55.6 5.6 41 25-65 18-58 (329)
330 2z43_A DNA repair and recombin 97.1 0.00037 1.3E-08 56.5 4.3 41 25-65 106-152 (324)
331 3cf0_A Transitional endoplasmi 97.1 0.00032 1.1E-08 56.0 3.8 27 25-51 48-74 (301)
332 2bjv_A PSP operon transcriptio 97.1 0.00041 1.4E-08 53.8 4.3 38 27-64 30-67 (265)
333 1c9k_A COBU, adenosylcobinamid 97.1 0.00026 8.7E-09 54.0 3.0 22 28-49 1-22 (180)
334 3fkq_A NTRC-like two-domain pr 97.1 0.00061 2.1E-08 56.2 5.5 43 22-64 139-182 (373)
335 1z2a_A RAS-related protein RAB 97.1 0.00035 1.2E-08 49.2 3.5 25 25-49 4-28 (168)
336 1v5w_A DMC1, meiotic recombina 97.1 0.00059 2E-08 55.9 5.3 40 25-64 121-166 (343)
337 3h4m_A Proteasome-activating n 97.1 0.00036 1.2E-08 54.5 3.8 27 25-51 50-76 (285)
338 2fn4_A P23, RAS-related protei 97.1 0.00043 1.5E-08 49.3 3.9 26 24-49 7-32 (181)
339 1u8z_A RAS-related protein RAL 97.1 0.0004 1.4E-08 48.7 3.7 25 25-49 3-27 (168)
340 2xj4_A MIPZ; replication, cell 97.1 0.00058 2E-08 54.1 5.0 41 26-66 4-45 (286)
341 2ph1_A Nucleotide-binding prot 97.1 0.00081 2.8E-08 52.4 5.8 43 25-67 17-60 (262)
342 2qby_B CDC6 homolog 3, cell di 97.1 0.00038 1.3E-08 56.1 4.0 28 25-52 44-71 (384)
343 3t5g_A GTP-binding protein RHE 97.1 0.00026 9E-09 50.9 2.7 26 23-48 3-28 (181)
344 2gj8_A MNME, tRNA modification 97.1 0.00035 1.2E-08 50.8 3.4 25 25-49 3-27 (172)
345 1ky3_A GTP-binding protein YPT 97.1 0.00039 1.3E-08 49.6 3.6 26 24-49 6-31 (182)
346 1sxj_E Activator 1 40 kDa subu 97.1 0.00038 1.3E-08 55.9 3.9 24 26-50 37-60 (354)
347 3llu_A RAS-related GTP-binding 97.1 0.00028 9.6E-09 52.1 2.9 32 19-50 13-44 (196)
348 3g5u_A MCG1178, multidrug resi 97.1 0.00015 5.3E-09 69.0 1.8 33 25-57 1058-1090(1284)
349 2v1u_A Cell division control p 97.1 0.00025 8.7E-09 56.8 2.7 29 24-52 42-70 (387)
350 1sxj_C Activator 1 40 kDa subu 97.1 0.00022 7.4E-09 57.7 2.3 35 29-63 49-83 (340)
351 2hxs_A RAB-26, RAS-related pro 97.1 0.00046 1.6E-08 49.3 3.8 26 24-49 4-29 (178)
352 1c1y_A RAS-related protein RAP 97.1 0.00044 1.5E-08 48.6 3.7 25 25-49 2-26 (167)
353 2iw3_A Elongation factor 3A; a 97.0 0.00011 3.9E-09 68.6 0.7 35 25-59 698-732 (986)
354 3tmk_A Thymidylate kinase; pho 97.0 0.00044 1.5E-08 53.8 3.9 28 25-52 4-31 (216)
355 1ofh_A ATP-dependent HSL prote 97.0 0.00055 1.9E-08 53.5 4.4 36 25-63 49-84 (310)
356 3szr_A Interferon-induced GTP- 97.0 0.00013 4.6E-09 64.4 0.9 32 28-59 47-79 (608)
357 1t9h_A YLOQ, probable GTPase E 97.0 8.5E-05 2.9E-09 60.9 -0.3 34 25-58 172-205 (307)
358 2ged_A SR-beta, signal recogni 97.0 0.0005 1.7E-08 50.1 3.9 26 24-49 46-71 (193)
359 2qag_B Septin-6, protein NEDD5 97.0 0.00025 8.6E-09 60.7 2.5 26 25-50 39-66 (427)
360 1g3q_A MIND ATPase, cell divis 97.0 0.00069 2.4E-08 51.3 4.8 41 26-66 2-43 (237)
361 2erx_A GTP-binding protein DI- 97.0 0.00041 1.4E-08 48.9 3.3 24 25-48 2-25 (172)
362 2g6b_A RAS-related protein RAB 97.0 0.00045 1.5E-08 49.4 3.5 28 22-49 6-33 (180)
363 2dyk_A GTP-binding protein; GT 97.0 0.00052 1.8E-08 48.1 3.8 23 27-49 2-24 (161)
364 2gf0_A GTP-binding protein DI- 97.0 0.00059 2E-08 49.7 4.2 26 23-48 5-30 (199)
365 1upt_A ARL1, ADP-ribosylation 97.0 0.00059 2E-08 48.3 4.1 25 24-48 5-29 (171)
366 2atv_A RERG, RAS-like estrogen 97.0 0.00056 1.9E-08 50.2 4.1 28 22-49 24-51 (196)
367 1svi_A GTP-binding protein YSX 97.0 0.00025 8.4E-09 51.7 2.1 26 24-49 21-46 (195)
368 1z08_A RAS-related protein RAB 97.0 0.00041 1.4E-08 49.0 3.2 26 24-49 4-29 (170)
369 2q3h_A RAS homolog gene family 97.0 0.00049 1.7E-08 50.5 3.7 29 21-49 15-43 (201)
370 4f4c_A Multidrug resistance pr 97.0 0.00016 5.5E-09 69.0 1.2 32 25-56 443-474 (1321)
371 3io3_A DEHA2D07832P; chaperone 97.0 0.00093 3.2E-08 55.4 5.7 43 23-65 15-59 (348)
372 3g5u_A MCG1178, multidrug resi 97.0 0.00015 5E-09 69.1 0.9 32 25-56 415-446 (1284)
373 2f7s_A C25KG, RAS-related prot 97.0 0.00044 1.5E-08 51.5 3.3 28 21-48 20-47 (217)
374 2iwr_A Centaurin gamma 1; ANK 97.0 0.00045 1.5E-08 49.5 3.2 29 21-49 2-30 (178)
375 1d2n_A N-ethylmaleimide-sensit 97.0 0.00061 2.1E-08 53.1 4.2 29 23-51 61-89 (272)
376 2bov_A RAla, RAS-related prote 97.0 0.00056 1.9E-08 50.1 3.8 25 25-49 13-37 (206)
377 3lxw_A GTPase IMAP family memb 97.0 0.00041 1.4E-08 54.1 3.2 28 22-49 17-44 (247)
378 1hyq_A MIND, cell division inh 97.0 0.00089 3E-08 51.7 5.1 41 27-67 3-44 (263)
379 4dsu_A GTPase KRAS, isoform 2B 97.0 0.00046 1.6E-08 49.6 3.2 25 25-49 3-27 (189)
380 3bc1_A RAS-related protein RAB 97.0 0.00053 1.8E-08 49.3 3.5 26 24-49 9-34 (195)
381 1ihu_A Arsenical pump-driving 97.0 0.00083 2.8E-08 58.5 5.3 42 24-65 6-47 (589)
382 2q6t_A DNAB replication FORK h 97.0 0.0008 2.7E-08 56.8 5.1 40 25-64 199-239 (444)
383 1wms_A RAB-9, RAB9, RAS-relate 97.0 0.00046 1.6E-08 49.2 3.1 25 25-49 6-30 (177)
384 3bgw_A DNAB-like replicative h 97.0 0.00065 2.2E-08 57.9 4.5 42 25-66 196-237 (444)
385 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00075 2.6E-08 49.0 4.3 25 26-50 23-47 (149)
386 4gzl_A RAS-related C3 botulinu 97.0 0.00057 2E-08 50.9 3.7 27 23-49 27-53 (204)
387 2efe_B Small GTP-binding prote 97.0 0.00049 1.7E-08 49.2 3.2 27 23-49 9-35 (181)
388 2nzj_A GTP-binding protein REM 96.9 0.00059 2E-08 48.4 3.6 25 25-49 3-27 (175)
389 2qu8_A Putative nucleolar GTP- 96.9 0.00064 2.2E-08 51.5 3.9 27 23-49 26-52 (228)
390 3lda_A DNA repair protein RAD5 96.9 0.00066 2.3E-08 57.3 4.4 40 25-64 177-222 (400)
391 1nrj_B SR-beta, signal recogni 96.9 0.00065 2.2E-08 50.6 3.8 27 24-50 10-36 (218)
392 3cwq_A Para family chromosome 96.9 0.0011 3.7E-08 50.3 5.2 38 28-66 2-40 (209)
393 1z0j_A RAB-22, RAS-related pro 96.9 0.00049 1.7E-08 48.5 3.0 26 25-50 5-30 (170)
394 2zej_A Dardarin, leucine-rich 96.9 0.0005 1.7E-08 50.2 3.1 23 27-49 3-25 (184)
395 3iev_A GTP-binding protein ERA 96.9 0.00046 1.6E-08 55.6 3.1 32 18-49 2-33 (308)
396 2o52_A RAS-related protein RAB 96.9 0.00047 1.6E-08 51.1 2.9 29 20-48 19-47 (200)
397 1r2q_A RAS-related protein RAB 96.9 0.00043 1.5E-08 48.7 2.5 24 25-48 5-28 (170)
398 1g16_A RAS-related protein SEC 96.9 0.00061 2.1E-08 48.0 3.3 24 26-49 3-26 (170)
399 3fdi_A Uncharacterized protein 96.9 0.00063 2.2E-08 51.8 3.6 27 25-51 5-31 (201)
400 2z4s_A Chromosomal replication 96.9 0.0006 2E-08 57.8 3.7 37 26-62 130-168 (440)
401 3t5d_A Septin-7; GTP-binding p 96.9 0.00051 1.8E-08 54.1 3.1 28 20-47 2-29 (274)
402 4dcu_A GTP-binding protein ENG 96.9 0.0005 1.7E-08 58.2 3.2 35 14-48 11-45 (456)
403 3gmt_A Adenylate kinase; ssgci 96.9 0.00068 2.3E-08 53.5 3.7 33 27-64 9-41 (230)
404 3ch4_B Pmkase, phosphomevalona 96.9 0.0018 6E-08 50.3 6.0 39 24-64 9-47 (202)
405 1xwi_A SKD1 protein; VPS4B, AA 96.9 0.00071 2.4E-08 54.8 3.9 27 24-50 43-69 (322)
406 2atx_A Small GTP binding prote 96.9 0.00058 2E-08 49.8 3.1 25 25-49 17-41 (194)
407 1ek0_A Protein (GTP-binding pr 96.9 0.0006 2E-08 48.0 3.0 24 26-49 3-26 (170)
408 2p5s_A RAS and EF-hand domain 96.9 0.00083 2.9E-08 49.5 3.9 27 23-49 25-51 (199)
409 2y8e_A RAB-protein 6, GH09086P 96.9 0.0006 2.1E-08 48.4 3.0 24 25-48 13-36 (179)
410 3cbq_A GTP-binding protein REM 96.8 0.00052 1.8E-08 51.0 2.7 25 23-47 20-44 (195)
411 3t1o_A Gliding protein MGLA; G 96.8 0.00054 1.9E-08 49.5 2.7 29 23-51 11-39 (198)
412 2il1_A RAB12; G-protein, GDP, 96.8 0.00061 2.1E-08 50.0 3.0 24 25-48 25-48 (192)
413 3reg_A RHO-like small GTPase; 96.8 0.00066 2.3E-08 49.6 3.2 28 22-49 19-46 (194)
414 2bme_A RAB4A, RAS-related prot 96.8 0.00078 2.7E-08 48.5 3.5 26 24-49 8-33 (186)
415 2ew1_A RAS-related protein RAB 96.8 0.00068 2.3E-08 50.8 3.2 25 25-49 25-49 (201)
416 3eie_A Vacuolar protein sortin 96.8 0.00091 3.1E-08 53.8 4.2 27 25-51 50-76 (322)
417 4i1u_A Dephospho-COA kinase; s 96.8 0.00066 2.3E-08 52.8 3.2 37 25-67 8-44 (210)
418 3hws_A ATP-dependent CLP prote 96.8 0.00098 3.3E-08 54.3 4.4 27 25-51 50-76 (363)
419 2xtp_A GTPase IMAP family memb 96.8 0.00085 2.9E-08 51.9 3.8 27 23-49 19-45 (260)
420 1m7b_A RND3/RHOE small GTP-bin 96.8 0.00079 2.7E-08 48.9 3.3 26 24-49 5-30 (184)
421 3tw8_B RAS-related protein RAB 96.8 0.0007 2.4E-08 48.2 3.0 24 25-48 8-31 (181)
422 2j0v_A RAC-like GTP-binding pr 96.8 0.0012 4E-08 48.9 4.2 29 21-49 4-32 (212)
423 1moz_A ARL1, ADP-ribosylation 96.8 0.00063 2.2E-08 48.9 2.6 24 24-47 16-39 (183)
424 1vg8_A RAS-related protein RAB 96.8 0.00094 3.2E-08 49.0 3.6 27 24-50 6-32 (207)
425 3k53_A Ferrous iron transport 96.8 0.00092 3.2E-08 52.4 3.7 26 25-50 2-27 (271)
426 1zj6_A ADP-ribosylation factor 96.8 0.0011 3.9E-08 48.1 3.9 25 24-48 14-38 (187)
427 1mh1_A RAC1; GTP-binding, GTPa 96.8 0.0009 3.1E-08 47.9 3.3 25 25-49 4-28 (186)
428 3q85_A GTP-binding protein REM 96.7 0.0011 3.6E-08 46.9 3.6 22 27-48 3-24 (169)
429 3m6a_A ATP-dependent protease 96.7 0.0009 3.1E-08 58.2 3.8 28 25-52 107-134 (543)
430 3uk6_A RUVB-like 2; hexameric 96.7 0.0009 3.1E-08 53.9 3.5 27 26-52 70-96 (368)
431 2r62_A Cell division protease 96.7 0.00039 1.3E-08 53.9 1.3 27 26-52 44-70 (268)
432 2woj_A ATPase GET3; tail-ancho 96.7 0.0019 6.5E-08 53.3 5.5 41 25-65 17-59 (354)
433 1q57_A DNA primase/helicase; d 96.7 0.0012 4E-08 56.5 4.3 41 25-65 241-282 (503)
434 3cpj_B GTP-binding protein YPT 96.7 0.00095 3.3E-08 50.2 3.3 28 22-49 9-36 (223)
435 2qnr_A Septin-2, protein NEDD5 96.7 0.00076 2.6E-08 54.4 2.9 26 24-49 16-41 (301)
436 2hup_A RAS-related protein RAB 96.7 0.00091 3.1E-08 49.7 3.2 26 24-49 27-52 (201)
437 1tue_A Replication protein E1; 96.7 0.00081 2.8E-08 52.7 3.0 25 27-51 59-83 (212)
438 1m2o_B GTP-binding protein SAR 96.7 0.00094 3.2E-08 49.1 3.2 26 23-48 20-45 (190)
439 1byi_A Dethiobiotin synthase; 96.7 0.0017 5.9E-08 48.7 4.7 36 27-64 2-38 (224)
440 3q72_A GTP-binding protein RAD 96.7 0.001 3.5E-08 46.9 3.2 22 27-48 3-24 (166)
441 1ksh_A ARF-like protein 2; sma 96.7 0.0012 4.3E-08 47.6 3.7 26 24-49 16-41 (186)
442 1fzq_A ADP-ribosylation factor 96.7 0.0012 4.2E-08 48.0 3.7 26 24-49 14-39 (181)
443 2fh5_B SR-beta, signal recogni 96.7 0.0011 3.6E-08 49.3 3.4 26 24-49 5-30 (214)
444 1ojl_A Transcriptional regulat 96.7 0.0014 4.8E-08 52.7 4.3 39 26-64 25-63 (304)
445 3k1j_A LON protease, ATP-depen 96.7 0.0012 4.1E-08 57.9 4.2 28 27-54 61-88 (604)
446 3e1s_A Exodeoxyribonuclease V, 96.7 0.0015 5.1E-08 57.4 4.8 35 26-60 204-238 (574)
447 4b4t_K 26S protease regulatory 96.7 0.0013 4.5E-08 56.2 4.2 29 24-52 204-232 (428)
448 3cph_A RAS-related protein SEC 96.7 0.0014 4.8E-08 48.2 3.9 26 24-49 18-43 (213)
449 3d8b_A Fidgetin-like protein 1 96.7 0.0011 3.9E-08 54.2 3.7 28 24-51 115-142 (357)
450 3qf7_A RAD50; ABC-ATPase, ATPa 96.7 0.0013 4.5E-08 54.4 4.1 26 27-52 24-49 (365)
451 3c5h_A Glucocorticoid receptor 96.7 0.0018 6E-08 50.5 4.6 37 12-48 5-50 (255)
452 1um8_A ATP-dependent CLP prote 96.7 0.0015 5.3E-08 53.3 4.5 26 26-51 72-97 (376)
453 2j1l_A RHO-related GTP-binding 96.7 0.0012 4E-08 49.5 3.4 25 24-48 32-56 (214)
454 3qks_A DNA double-strand break 96.7 0.0015 5.2E-08 49.5 4.1 27 26-52 23-49 (203)
455 1r8s_A ADP-ribosylation factor 96.7 0.0012 4.1E-08 46.4 3.3 21 28-48 2-22 (164)
456 2i1q_A DNA repair and recombin 96.7 0.0015 5.2E-08 52.4 4.3 25 25-49 97-121 (322)
457 1w1w_A Structural maintenance 96.6 0.0012 4.2E-08 55.3 3.7 28 25-52 25-52 (430)
458 3ux8_A Excinuclease ABC, A sub 96.6 0.00058 2E-08 60.6 1.8 23 25-47 347-369 (670)
459 4aby_A DNA repair protein RECN 96.6 0.00045 1.5E-08 57.0 1.0 24 28-51 62-85 (415)
460 2g3y_A GTP-binding protein GEM 96.6 0.0013 4.6E-08 50.2 3.6 27 22-48 33-59 (211)
461 3ux8_A Excinuclease ABC, A sub 96.6 0.00085 2.9E-08 59.5 2.8 19 25-43 43-61 (670)
462 4b4t_L 26S protease subunit RP 96.6 0.0015 5.1E-08 56.0 4.2 29 24-52 213-241 (437)
463 2b6h_A ADP-ribosylation factor 96.6 0.0016 5.5E-08 47.9 3.8 25 23-47 26-50 (192)
464 1w4r_A Thymidine kinase; type 96.6 0.003 1E-07 48.7 5.5 45 22-66 16-62 (195)
465 2j9r_A Thymidine kinase; TK1, 96.6 0.0041 1.4E-07 48.6 6.3 44 23-66 25-70 (214)
466 1f6b_A SAR1; gtpases, N-termin 96.6 0.0014 4.7E-08 48.6 3.5 25 24-48 23-47 (198)
467 4dhe_A Probable GTP-binding pr 96.6 0.00042 1.4E-08 51.7 0.6 26 24-49 27-52 (223)
468 3pg5_A Uncharacterized protein 96.6 0.0013 4.4E-08 54.2 3.6 41 27-67 2-43 (361)
469 1zbd_A Rabphilin-3A; G protein 96.6 0.0013 4.5E-08 48.2 3.3 25 25-49 7-31 (203)
470 3ez2_A Plasmid partition prote 96.6 0.0024 8.1E-08 52.8 5.2 41 25-65 107-154 (398)
471 3hdt_A Putative kinase; struct 96.6 0.0019 6.5E-08 50.3 4.3 26 26-51 14-39 (223)
472 4b4t_M 26S protease regulatory 96.6 0.0016 5.4E-08 55.8 4.2 29 24-52 213-241 (434)
473 3pfi_A Holliday junction ATP-d 96.6 0.0013 4.6E-08 52.5 3.5 25 27-51 56-80 (338)
474 3upu_A ATP-dependent DNA helic 96.6 0.002 6.9E-08 54.5 4.7 33 28-60 47-80 (459)
475 3tqf_A HPR(Ser) kinase; transf 96.6 0.0016 5.5E-08 49.9 3.8 25 25-49 15-39 (181)
476 2qp9_X Vacuolar protein sortin 96.6 0.0014 4.7E-08 53.8 3.6 27 25-51 83-109 (355)
477 2qag_C Septin-7; cell cycle, c 96.6 0.0011 3.7E-08 56.4 3.0 28 24-51 29-56 (418)
478 2iw3_A Elongation factor 3A; a 96.5 0.0013 4.3E-08 61.6 3.5 24 25-48 460-483 (986)
479 2cxx_A Probable GTP-binding pr 96.5 0.0013 4.4E-08 47.4 2.8 23 27-49 2-24 (190)
480 1sxj_D Activator 1 41 kDa subu 96.5 0.0015 5.2E-08 52.0 3.5 23 29-51 61-83 (353)
481 1hqc_A RUVB; extended AAA-ATPa 96.5 0.0017 5.9E-08 51.2 3.7 35 26-63 38-72 (324)
482 1sxj_A Activator 1 95 kDa subu 96.5 0.0029 9.9E-08 54.4 5.4 26 25-50 76-101 (516)
483 4dkx_A RAS-related protein RAB 96.5 0.0019 6.6E-08 49.6 3.9 32 15-48 4-35 (216)
484 2bcg_Y Protein YP2, GTP-bindin 96.5 0.0016 5.6E-08 47.9 3.3 25 25-49 7-31 (206)
485 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0012 4.1E-08 54.9 2.7 34 26-62 123-156 (331)
486 1ega_A Protein (GTP-binding pr 96.5 0.0012 4E-08 53.1 2.6 25 25-49 7-31 (301)
487 2orv_A Thymidine kinase; TP4A 96.5 0.0048 1.6E-07 49.0 6.0 45 22-66 15-61 (234)
488 3pxi_A Negative regulator of g 96.5 0.0037 1.3E-07 56.0 6.0 40 28-67 523-562 (758)
489 2ius_A DNA translocase FTSK; n 96.5 0.0024 8.2E-08 55.7 4.6 40 27-66 168-209 (512)
490 3q3j_B RHO-related GTP-binding 96.5 0.0023 7.8E-08 48.1 3.9 26 24-49 25-50 (214)
491 4b4t_J 26S protease regulatory 96.5 0.0018 6E-08 55.2 3.5 29 24-52 180-208 (405)
492 1ypw_A Transitional endoplasmi 96.5 0.0016 5.5E-08 59.3 3.5 28 24-51 236-263 (806)
493 1sxj_B Activator 1 37 kDa subu 96.4 0.0013 4.6E-08 51.4 2.6 24 29-52 45-68 (323)
494 1wb9_A DNA mismatch repair pro 96.4 0.002 6.7E-08 58.9 3.9 27 24-50 605-631 (800)
495 4djt_A GTP-binding nuclear pro 96.4 0.00072 2.5E-08 50.3 0.9 26 23-48 8-33 (218)
496 1ewq_A DNA mismatch repair pro 96.4 0.0018 6.3E-08 58.9 3.7 25 26-50 576-600 (765)
497 3gj0_A GTP-binding nuclear pro 96.4 0.0015 5.1E-08 48.9 2.6 29 22-50 11-40 (221)
498 2dhr_A FTSH; AAA+ protein, hex 96.4 0.0019 6.4E-08 56.1 3.5 26 26-51 64-89 (499)
499 2x77_A ADP-ribosylation factor 96.4 0.0016 5.4E-08 47.3 2.6 24 24-47 20-43 (189)
500 3qkt_A DNA double-strand break 96.4 0.0026 9E-08 51.7 4.3 26 25-50 22-47 (339)
No 1
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.47 E-value=7.1e-14 Score=115.87 Aligned_cols=92 Identities=12% Similarity=0.075 Sum_probs=72.2
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhc--CCCCceeecCCCCCCCCCc-ccCCCCcccccCCCCChH---HHHHHH
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYD--KQDNPYVINLDPACRDVPY-LVNVDPACRDVPYLVNVG---ELSMLL 95 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~--~g~~v~vv~lD~~~~~l~~-~~~~d~~n~d~p~a~d~~---~~l~~L 95 (147)
..++|++|+|+|+|||||||+++.|..++.. .++.+.++++|.++..... ....-...+++|+++|.+ +++..|
T Consensus 88 ~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L 167 (321)
T 3tqc_A 88 EPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAI 167 (321)
T ss_dssp CCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHHHhh
Confidence 3567899999999999999999999999874 3567999999999854221 112213456789999987 678889
Q ss_pred hCCC-eeeEeccchhhhhh
Q psy11490 96 LNGN-KLEHQILNFQKLAT 113 (147)
Q Consensus 96 ~~g~-~i~~p~ydf~~~~~ 113 (147)
++|+ .+..|.|||.....
T Consensus 168 ~~g~~~v~~P~yd~~~~~r 186 (321)
T 3tqc_A 168 KSGQRNVRIPVYSHHYYDI 186 (321)
T ss_dssp HTTCSSEEEEEEETTTTEE
T ss_pred hccccccccchhhhhcccc
Confidence 9998 89999999986653
No 2
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.34 E-value=2e-12 Score=101.72 Aligned_cols=95 Identities=18% Similarity=0.177 Sum_probs=68.0
Q ss_pred CCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcC-----CCCceeecCCCCCCCCCcc----cCCCCcccccCCCCC
Q psy11490 17 DHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDK-----QDNPYVINLDPACRDVPYL----VNVDPACRDVPYLVN 87 (147)
Q Consensus 17 ~~~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~-----g~~v~vv~lD~~~~~l~~~----~~~d~~n~d~p~a~d 87 (147)
+|..+...++.+|+|+|++||||||+++.|...+... +..+.++++|.+++.+... .......|++++++|
T Consensus 13 ~~~~~~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d 92 (252)
T 1uj2_A 13 NHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFD 92 (252)
T ss_dssp --------CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBC
T ss_pred HhhhccCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhh
Confidence 4555666788999999999999999999999877642 4567899999999764321 112234678899998
Q ss_pred hH---HHHHHHhCCCeeeEeccchhhh
Q psy11490 88 VG---ELSMLLLNGNKLEHQILNFQKL 111 (147)
Q Consensus 88 ~~---~~l~~L~~g~~i~~p~ydf~~~ 111 (147)
.+ +.+..+..+..+..|.||+...
T Consensus 93 ~~~l~~~L~~l~~~~~v~~~~~d~~~~ 119 (252)
T 1uj2_A 93 NELILKTLKEITEGKTVQIPVYDFVSH 119 (252)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETTTT
T ss_pred HHHHHHHHHHHHcCCeeecCccccccc
Confidence 76 5677788888899999998654
No 3
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.22 E-value=4.9e-12 Score=103.00 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=63.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCC--CCceee-cCCCCCCCCCcccCC--------CCcccccCCCCChH--
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQ--DNPYVI-NLDPACRDVPYLVNV--------DPACRDVPYLVNVG-- 89 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g--~~v~vv-~lD~~~~~l~~~~~~--------d~~n~d~p~a~d~~-- 89 (147)
.+++.+|+|+|+|||||||+++.|...+...+ ..+.++ ++|+|+..-....+. ....+.+|+++|.+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l 107 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLL 107 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHH
Confidence 45789999999999999999999999997643 334445 999998642111111 01223468999976
Q ss_pred -HHHHHHhCC------CeeeEeccchhh
Q psy11490 90 -ELSMLLLNG------NKLEHQILNFQK 110 (147)
Q Consensus 90 -~~l~~L~~g------~~i~~p~ydf~~ 110 (147)
+.+..|..| +.+..|.|++..
T Consensus 108 ~~~l~~l~~g~~t~~~~~v~~p~y~~~~ 135 (290)
T 1odf_A 108 QEVLNTIFNNNEHPDQDTVVLPKYDKSQ 135 (290)
T ss_dssp HHHHHHHTC------CCEEEECCEETTH
T ss_pred HHHHHHhhccCccccCcceeeccCcccc
Confidence 678888888 778999999875
No 4
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.13 E-value=8.2e-11 Score=89.88 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=65.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccCCC-CcccccCCCCChH---HHHHHHhCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVD-PACRDVPYLVNVG---ELSMLLLNGN 99 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~~d-~~n~d~p~a~d~~---~~l~~L~~g~ 99 (147)
.++.+++|+|+||||||||++.|...+...|..+.+|.+|.++..-....+.. ......+..++.. ..+..|..++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 99 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQE 99 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcCC
Confidence 56789999999999999999999999987665688899998774311111110 1123466677754 5677888889
Q ss_pred eeeEeccchhhhh
Q psy11490 100 KLEHQILNFQKLA 112 (147)
Q Consensus 100 ~i~~p~ydf~~~~ 112 (147)
.+..|.|++....
T Consensus 100 ~i~~p~~d~~~~~ 112 (208)
T 3c8u_A 100 RVIYPLFDRARDI 112 (208)
T ss_dssp CEEEEEEETTTTE
T ss_pred ceecccCCccccC
Confidence 9999999986543
No 5
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.11 E-value=1.9e-10 Score=93.58 Aligned_cols=89 Identities=12% Similarity=0.105 Sum_probs=63.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh--cCCCCceeecCCCCCCCCCcccC-CCCcccccCCCCChH---HHHHHHhC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY--DKQDNPYVINLDPACRDVPYLVN-VDPACRDVPYLVNVG---ELSMLLLN 97 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~--~~g~~v~vv~lD~~~~~l~~~~~-~d~~n~d~p~a~d~~---~~l~~L~~ 97 (147)
.++.+|+|+|++|||||||++.|..++. ..++.+.++++|.++..-..... .-+.++..+..++.. ..+..+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l~~ 157 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKS 157 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEeecCCCCCCccHHHHHHHHHHHhC
Confidence 5678999999999999999999999987 66778999999987742100000 001234455566665 44666777
Q ss_pred CCe-eeEeccchhhhh
Q psy11490 98 GNK-LEHQILNFQKLA 112 (147)
Q Consensus 98 g~~-i~~p~ydf~~~~ 112 (147)
++. +..|.|++....
T Consensus 158 ~~~~i~~P~~~~~~~~ 173 (308)
T 1sq5_A 158 GVPNVTAPVYSHLIYD 173 (308)
T ss_dssp TCSCEEECCEETTTTE
T ss_pred CCCceecccccccccC
Confidence 776 999999997653
No 6
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.07 E-value=3.4e-10 Score=92.92 Aligned_cols=114 Identities=12% Similarity=0.077 Sum_probs=72.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCC--CCceeecCCCCCCCCCcccCCCCc-ccccCCCCChH---HHHHHHh
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQ--DNPYVINLDPACRDVPYLVNVDPA-CRDVPYLVNVG---ELSMLLL 96 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g--~~v~vv~lD~~~~~l~~~~~~d~~-n~d~p~a~d~~---~~l~~L~ 96 (147)
..++.+|+|+|+||||||||++.|...+.... ..+.++.+|+++.......+.... .+..++++|.+ +.+..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~ 166 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK 166 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC
Confidence 45789999999999999999999999997642 368899999987432111111111 23456677755 5566676
Q ss_pred CCCe-eeEeccchhhhhhhhcceeEEeeccccccceEeeCCCCCC
Q psy11490 97 NGNK-LEHQILNFQKLATWMAFGFAFMRSSCVQANFIKMGPNPTL 140 (147)
Q Consensus 97 ~g~~-i~~p~ydf~~~~~~~~~g~iive~~~~~~~~ii~~p~~~~ 140 (147)
.+.. ...|.|++....+...+-+++.++. + +|+|-|....
T Consensus 167 ~~~~~~~~~~lS~G~~qRv~~a~al~~~p~-i---lIlDep~~~~ 207 (312)
T 3aez_A 167 SGSDYACAPVYSHLHYDIIPGAEQVVRHPD-I---LILEGLNVLQ 207 (312)
T ss_dssp TTCSCEEEEEEETTTTEEEEEEEEEECSCS-E---EEEECTTTTC
T ss_pred CCcccCCcccCChhhhhhhhhHHHhccCCC-E---EEECCccccC
Confidence 5543 6778888876554332222222222 2 4566666654
No 7
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.06 E-value=2e-10 Score=87.07 Aligned_cols=87 Identities=22% Similarity=0.330 Sum_probs=60.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcc---cCCCCcccccCCCCChH---HHHHHH
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYL---VNVDPACRDVPYLVNVG---ELSMLL 95 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~---~~~d~~n~d~p~a~d~~---~~l~~L 95 (147)
...++.+|+|+|++||||||+++.|...+.. .+.++.+|+++...... ... ...|+.+..++.+ +.+..+
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 77 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDLGHLPLEERL-RVNYDHPDAFDLALYLEHAQAL 77 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCCTTSCHHHHH-HSCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCcccccHHHhc-CCCCCChhhhhHHHHHHHHHHH
Confidence 3456789999999999999999999998864 48889999988643311 111 1123445556644 556667
Q ss_pred hCCCeeeEeccchhhhh
Q psy11490 96 LNGNKLEHQILNFQKLA 112 (147)
Q Consensus 96 ~~g~~i~~p~ydf~~~~ 112 (147)
..++.+..|.+++....
T Consensus 78 ~~~~~~~~~~~~~s~g~ 94 (211)
T 3asz_A 78 LRGLPVEMPVYDFRAYT 94 (211)
T ss_dssp HTTCCEEECCEETTTTE
T ss_pred HcCCCcCCCcccCcccC
Confidence 77788899999887553
No 8
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.01 E-value=5.1e-11 Score=96.71 Aligned_cols=83 Identities=12% Similarity=0.006 Sum_probs=59.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCC-CCcc--------cCCCCcccc--cCCCCChH---H
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD-VPYL--------VNVDPACRD--VPYLVNVG---E 90 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~-l~~~--------~~~d~~n~d--~p~a~d~~---~ 90 (147)
++.+|+|+|++||||||+++.|.+.+...+.++.++++|.+++. .... ... ..+++ .++++|.+ +
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g-~~~~~~fg~~~~d~~~l~~ 82 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAG-DATFSHFSYEANELKELER 82 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHT-CTTCSTTSGGGBCHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhcc-CcCcCCCChhhhcHHHHHH
Confidence 46789999999999999999999988766777899999999973 3221 111 12344 38888865 5
Q ss_pred HHHHHhCCCeeeEeccch
Q psy11490 91 LSMLLLNGNKLEHQILNF 108 (147)
Q Consensus 91 ~l~~L~~g~~i~~p~ydf 108 (147)
.+..+.+++.+..|.|++
T Consensus 83 ~l~~l~~~~~i~~~~~~~ 100 (290)
T 1a7j_A 83 VFREYGETGQGRTRTYVH 100 (290)
T ss_dssp HHHHHHHHSCCEECCCC-
T ss_pred HHHHHHcCCcccceeecc
Confidence 677788888889999954
No 9
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.92 E-value=1.7e-09 Score=82.20 Aligned_cols=85 Identities=16% Similarity=0.144 Sum_probs=59.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcccCCCC---cccccCCCCChHHHH----HHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDP---ACRDVPYLVNVGELS----MLLL 96 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~~~~d~---~n~d~p~a~d~~~~l----~~L~ 96 (147)
.++.+|+|+|++||||||+++.|...+...++.+.++++|.++.........+. .++ ...++|.+... ..+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~l~~~v~~~l~ 98 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEY-YYLQWDVEWLTHQLFRQLK 98 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHH-HHTSSCHHHHHHHTGGGTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCC-CccccCHHHHHHHHHHHHh
Confidence 457899999999999999999999999888888999999987754211000000 011 13556666332 3345
Q ss_pred CCCeeeEeccchh
Q psy11490 97 NGNKLEHQILNFQ 109 (147)
Q Consensus 97 ~g~~i~~p~ydf~ 109 (147)
.++.+..|.|++.
T Consensus 99 ~~~~~~~~~~~~~ 111 (201)
T 1rz3_A 99 ASHQLTLPFYDHE 111 (201)
T ss_dssp TCSEEEEEEEETT
T ss_pred cCCccccCceecc
Confidence 5678888999986
No 10
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.85 E-value=1.5e-09 Score=91.28 Aligned_cols=56 Identities=11% Similarity=0.075 Sum_probs=39.6
Q ss_pred CceeecCCCCCCC---CCcccCC--CCcccccCCCCChH---HHHHHHhCC-----------------------------
Q psy11490 56 NPYVINLDPACRD---VPYLVNV--DPACRDVPYLVNVG---ELSMLLLNG----------------------------- 98 (147)
Q Consensus 56 ~v~vv~lD~~~~~---l~~~~~~--d~~n~d~p~a~d~~---~~l~~L~~g----------------------------- 98 (147)
.+.+++||.||.. +....+. -..++++|++||.. +++..|+++
T Consensus 155 ~v~vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 234 (359)
T 2ga8_A 155 IAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTI 234 (359)
T ss_dssp SEEEEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTC
T ss_pred eEEEEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccC
Confidence 4678899999965 2211110 14567899999987 667777766
Q ss_pred CeeeEeccchhhh
Q psy11490 99 NKLEHQILNFQKL 111 (147)
Q Consensus 99 ~~i~~p~ydf~~~ 111 (147)
+.|..|.|||...
T Consensus 235 ~~v~~P~yD~~~~ 247 (359)
T 2ga8_A 235 PDIFVPGFNHALK 247 (359)
T ss_dssp CCEEEEEEETTTT
T ss_pred ceEeeccccCccC
Confidence 5799999999753
No 11
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.82 E-value=1e-08 Score=80.10 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=57.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcC-----CCCceeecCCCCCCCCCcccC----CCCcccccCCCCChH---HH
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDK-----QDNPYVINLDPACRDVPYLVN----VDPACRDVPYLVNVG---EL 91 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~-----g~~v~vv~lD~~~~~l~~~~~----~d~~n~d~p~a~d~~---~~ 91 (147)
.++.+|+|+|++||||||+++.|...+... ...+.++.+|.+++.+..... .....|+.+++++.+ +.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRT 102 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCcccccHHHHHHH
Confidence 467899999999999999999999887432 234668888887765443211 112345566666655 34
Q ss_pred HHHHhCCCeeeEeccchhhh
Q psy11490 92 SMLLLNGNKLEHQILNFQKL 111 (147)
Q Consensus 92 l~~L~~g~~i~~p~ydf~~~ 111 (147)
+..+..+.....+.|++...
T Consensus 103 L~~l~~~~~~~~~~ls~g~~ 122 (245)
T 2jeo_A 103 LKNIVEGKTVEVPTYDFVTH 122 (245)
T ss_dssp HHHHHTTCCEEECCEETTTT
T ss_pred HHHHHCCCCeeccccccccc
Confidence 44465555556666766543
No 12
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.49 E-value=2.8e-07 Score=69.55 Aligned_cols=43 Identities=30% Similarity=0.320 Sum_probs=35.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCC
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~ 68 (147)
.-.++.+|+|+|++||||||+++.|.+.+. .+.++++|+++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDFFKP 59 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGGBCC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCccccC
Confidence 444578999999999999999999988763 3789999998753
No 13
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.49 E-value=1.9e-07 Score=76.32 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=39.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
..++.+++|+|+|||||||+++.|+.++...+++|.+...|.+.
T Consensus 99 ~~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 99 EPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR 142 (304)
T ss_dssp CCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC
Confidence 44678999999999999999999999999989999999998754
No 14
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.42 E-value=6.1e-07 Score=69.49 Aligned_cols=56 Identities=30% Similarity=0.573 Sum_probs=45.9
Q ss_pred CCCCCC-CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCCCCcc
Q psy11490 16 GDHGPE-FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYL 72 (147)
Q Consensus 16 ~~~~~~-~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~l~~~ 72 (147)
|+|-++ -.++..+++++|..|+||||++..|+..+. .|.++.+++.|+.....++.
T Consensus 3 ~~~~~~~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~ 59 (262)
T 1yrb_A 3 GSHHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYE 59 (262)
T ss_dssp TCCCCCCTTCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSC
T ss_pred CccccccCCcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCC
Confidence 455555 445678999999999999999999999999 89999999999976555433
No 15
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.40 E-value=3.4e-07 Score=74.67 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=39.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
-.++.+++++|++||||||+++.|+.++...+++|.+...|.+.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 45688999999999999999999999999888899999988754
No 16
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.40 E-value=3.2e-07 Score=75.77 Aligned_cols=44 Identities=25% Similarity=0.431 Sum_probs=40.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
..++.+++|+|++||||||+++.|+.++...+++|.+...|.+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r 169 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR 169 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc
Confidence 35789999999999999999999999999999999999998764
No 17
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=98.39 E-value=3e-07 Score=69.65 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=36.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
+.++++|+|++||||||++.+|...+...|.+|.++..|+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 35689999999999999999999999988989999998875
No 18
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.37 E-value=3.2e-07 Score=68.85 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=31.1
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
|..+++.+|+|+|++||||||+++.|.+.+...+.++..
T Consensus 4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~ 42 (215)
T 1nn5_A 4 MAARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL 42 (215)
T ss_dssp ---CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 444568899999999999999999999999877765533
No 19
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.34 E-value=3.4e-07 Score=67.26 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=33.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
+.+|+|+|++||||||+++.|.+.+...|....+++.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~ 42 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV 42 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHH
Confidence 5689999999999999999999999877655677776644
No 20
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.33 E-value=5.8e-07 Score=75.28 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=39.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
-.++.+++|+|++||||||+++.|+.++...+++|.+...|.+.
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 35689999999999999999999999999888899999988754
No 21
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.33 E-value=6.2e-07 Score=73.44 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=40.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
..++.+++|+|++||||||++..|+..+...+++|.++..|.+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 45688999999999999999999999999888899999999764
No 22
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.31 E-value=5.4e-07 Score=67.97 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 16 GDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 16 ~~~~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
--+..|...++.+|+|+|++||||||+++.|...+ | ..+++-|..
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~~ 63 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET---G--LEFAEADAF 63 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGGG
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---C--CeEEccccc
Confidence 33445566678899999999999999999999887 3 344555554
No 23
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.30 E-value=7.7e-07 Score=66.73 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=30.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+++.+|+|+|++||||||+++.|.+.+...+.++.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~ 43 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKH 43 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 457899999999999999999999998877665543
No 24
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.29 E-value=6.2e-07 Score=66.56 Aligned_cols=42 Identities=29% Similarity=0.384 Sum_probs=36.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
+++.+|+|+|++||||||+++.|...+...|+.+.+++.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 357899999999999999999999999988888877766654
No 25
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=98.28 E-value=7.3e-07 Score=67.42 Aligned_cols=41 Identities=24% Similarity=0.269 Sum_probs=35.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
+..+++|+|+||||||||++.|...+...+.++.++..|+.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 35689999999999999999999999888888888887763
No 26
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.27 E-value=1.4e-06 Score=74.92 Aligned_cols=44 Identities=32% Similarity=0.464 Sum_probs=40.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
.+|.+|+++|++||||||++.+|+.++...|.+|.++..|++..
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 46899999999999999999999999999999999999998753
No 27
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.26 E-value=1e-06 Score=77.02 Aligned_cols=44 Identities=18% Similarity=0.338 Sum_probs=39.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
-.++.+++|+|++||||||++++|+.++...+++|.+...|.+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 45689999999999999999999999999888899998888754
No 28
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.26 E-value=1e-06 Score=73.49 Aligned_cols=40 Identities=20% Similarity=0.364 Sum_probs=34.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC--CCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA--CRDVP 70 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~--~~~l~ 70 (147)
+++|+|+||+||||||++..|++.+. +.+|++|.+ |+.++
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~qvYr~~~ 48 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSMQVYQGMD 48 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSSTTBTTCC
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcC-----Cceecccccccccccc
Confidence 47999999999999999999998874 689999998 66543
No 29
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.25 E-value=8e-07 Score=67.03 Aligned_cols=44 Identities=27% Similarity=0.461 Sum_probs=33.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
..++.+|+|+|+|||||||+++.|...+...|..+.++.-|...
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh
Confidence 35688999999999999999999999998555333355555443
No 30
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.25 E-value=6.8e-07 Score=65.57 Aligned_cols=38 Identities=29% Similarity=0.369 Sum_probs=32.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
.+|+|+|++||||||+++.|.+.+...|..+.+++.|.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 47999999999999999999999987777777776544
No 31
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.24 E-value=1.3e-06 Score=74.91 Aligned_cols=44 Identities=20% Similarity=0.347 Sum_probs=40.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
..++.+|+++|++||||||++.+|+.++...|.+|.++..|.+.
T Consensus 94 ~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 94 TKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp CSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 34689999999999999999999999999999999999999865
No 32
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.23 E-value=1.2e-06 Score=71.23 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=38.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhc-CCCCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYD-KQDNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~-~g~~v~vv~lD~~~ 66 (147)
.++.+++++|++||||||++..|+..+.. .|.+|.++..|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 45789999999999999999999999985 78899999999864
No 33
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.21 E-value=1.6e-06 Score=71.22 Aligned_cols=44 Identities=18% Similarity=0.338 Sum_probs=40.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
..++.+|+|+|++||||||++..|+..+...+++|.++..|.+.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR 145 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 45688999999999999999999999999889999999999864
No 34
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.20 E-value=9e-07 Score=66.48 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=30.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
++.+|+|+|++||||||+++.|.+.+. ..+++.|...
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg-----~~~i~~d~~~ 53 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACG-----YPFIEGDALH 53 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHT-----CCEEEGGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-----CEEEeCCcCc
Confidence 367899999999999999999998873 4567777654
No 35
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.20 E-value=1.3e-06 Score=64.03 Aligned_cols=40 Identities=28% Similarity=0.214 Sum_probs=31.5
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
|..+++.+|+|+|++||||||+++.|.+.+. ..+++.|..
T Consensus 1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~~l~-----~~~i~~d~~ 40 (194)
T 1qf9_A 1 MEKSKPNVVFVLGGPGSGKGTQCANIVRDFG-----WVHLSAGDL 40 (194)
T ss_dssp CCCCCCEEEEEEESTTSSHHHHHHHHHHHHC-----CEEEEHHHH
T ss_pred CCCCcCcEEEEECCCCCCHHHHHHHHHHHhC-----CeEeeHHHH
Confidence 4456678999999999999999999998773 455665543
No 36
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.17 E-value=2.4e-06 Score=62.51 Aligned_cols=37 Identities=19% Similarity=0.349 Sum_probs=29.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
.+..+|+|+|++||||||+++.|...+ | ..+++.|..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCccc
Confidence 346799999999999999999998876 2 455666654
No 37
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.16 E-value=1.2e-06 Score=65.29 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=24.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
++.+++|+|||||||||+++.|...+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 467999999999999999999998863
No 38
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.16 E-value=1.1e-06 Score=65.44 Aligned_cols=28 Identities=21% Similarity=0.301 Sum_probs=25.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.++.+++|+|++||||||+++.|...+.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4567999999999999999999998873
No 39
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.16 E-value=2e-06 Score=70.92 Aligned_cols=43 Identities=23% Similarity=0.432 Sum_probs=38.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.+..+++|+|++|||||||++.|..++...++++.+++.|+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 4678999999999999999999999999888899999988753
No 40
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.15 E-value=1.8e-06 Score=68.11 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=34.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
++.+|+|+|++||||||+++.|...+...|..+.+++.|...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 467999999999999999999999987767555556767644
No 41
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.15 E-value=3.6e-06 Score=68.15 Aligned_cols=42 Identities=26% Similarity=0.430 Sum_probs=39.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
++.+++++|++|+||||++..|+..+...+++|.++..|.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 788999999999999999999999999889999999999754
No 42
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.14 E-value=1.5e-06 Score=63.55 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
++.+|+|+|+|||||||+++.|.+.+.. ....++.|.+
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~---~~~~~~~D~~ 39 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPE---PWLAFGVDSL 39 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSS---CEEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCC---CeEEeccchH
Confidence 4578999999999999999999988753 2344456644
No 43
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.13 E-value=2.5e-06 Score=63.38 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=29.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+..+++++|++|||||||++.|+..+ ...+.|.+-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~ 66 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSP 66 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEEC
Confidence 356799999999999999999999999 555555543
No 44
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.12 E-value=7.6e-07 Score=69.89 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=29.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+||||||||||++.|..++....+.+.+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 64 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYI 64 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEE
Confidence 56799999999999999999999998776555544
No 45
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.12 E-value=2.2e-06 Score=64.32 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=34.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
+..+++|+|++|||||||++.++..+...+..+.+++.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 4568999999999999999999988776677888887765
No 46
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.12 E-value=1.8e-06 Score=62.26 Aligned_cols=34 Identities=21% Similarity=0.091 Sum_probs=27.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
.+|+|+|++||||||+++.|.+.+. ..+++.|.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~-----~~~i~~d~~ 35 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK-----YPIIKGSSF 35 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC-----CCEEECCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-----CeeecCccc
Confidence 3799999999999999999998874 445555653
No 47
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.12 E-value=1.6e-06 Score=64.47 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=23.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+..+++|+|||||||||+++.|...+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999998765
No 48
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.11 E-value=1.2e-06 Score=66.04 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=31.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.+++|+|+|||||||+++.|..++...|.++-.+.+|...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 5799999999999999999999999876666666666543
No 49
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.11 E-value=2.2e-06 Score=66.24 Aligned_cols=36 Identities=25% Similarity=0.648 Sum_probs=29.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
.++.+|+|.|++||||||+++.|..+ ++.+.+...+
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 45789999999999999999998876 4467666554
No 50
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.11 E-value=3.6e-06 Score=62.66 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=27.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQ 54 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g 54 (147)
++.+|+|+|++||||||+++.|.+.+...|
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 568999999999999999999999987655
No 51
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.10 E-value=3.8e-06 Score=69.44 Aligned_cols=43 Identities=23% Similarity=0.451 Sum_probs=37.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
...+|+|+|++|||||||++.|...+...++++.++..|+...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 4789999999999999999999999988888999999998643
No 52
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.10 E-value=2e-06 Score=63.36 Aligned_cols=39 Identities=23% Similarity=0.146 Sum_probs=30.2
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
..+++..|+|+|++||||||+++.|.+.+. ..+++.|..
T Consensus 7 ~~~~~~~i~i~G~~GsGKst~~~~l~~~~~-----~~~~~~d~~ 45 (180)
T 3iij_A 7 EFMLLPNILLTGTPGVGKTTLGKELASKSG-----LKYINVGDL 45 (180)
T ss_dssp TTCCCCCEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHH
T ss_pred ccccCCeEEEEeCCCCCHHHHHHHHHHHhC-----CeEEEHHHH
Confidence 344567899999999999999999998873 455665553
No 53
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.10 E-value=1.3e-06 Score=65.18 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=24.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
+.+++|+|||||||||+++.|...+..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 357899999999999999999998863
No 54
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.10 E-value=1.7e-06 Score=67.98 Aligned_cols=38 Identities=11% Similarity=0.192 Sum_probs=32.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
.+..+++|+|+||||||||++.|..++....+.+.+-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 63 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG 63 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 36789999999999999999999999887666666543
No 55
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.10 E-value=1.6e-06 Score=63.05 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=23.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+.+|+|+|++||||||+++.|...+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998874
No 56
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.09 E-value=2.8e-06 Score=67.73 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=33.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcC-CCCceeecCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDK-QDNPYVINLDP 64 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~-g~~v~vv~lD~ 64 (147)
.+..+++|+||+||||||+++.|..++... .+.+.+...+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI 64 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc
Confidence 456799999999999999999999998765 55676665443
No 57
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.08 E-value=4.1e-06 Score=61.69 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=30.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
++.+|+|+|++||||||+++.|...+...|..+..+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 5679999999999999999999999876664444343
No 58
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.08 E-value=3.3e-06 Score=63.17 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=30.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
..++.+|+|+|++||||||+++.|.+.+. ..+++.|..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g-----~~~i~~d~~ 49 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS-----FVHLSAGDL 49 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS-----CEEEEHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcC-----ceEEeHHHH
Confidence 45678999999999999999999987753 456666653
No 59
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.08 E-value=2.6e-06 Score=62.49 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=28.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
++.+|+|+|++||||||+++.|.+.+. ..+++.|..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~-----~~~i~~d~~ 37 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG-----YTHLSAGEL 37 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC-----CEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC-----CeEEeHHHH
Confidence 578999999999999999999988763 455666654
No 60
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.08 E-value=3.5e-06 Score=62.20 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.++.+++|+|++||||||+++.|...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 35689999999999999999999886
No 61
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.07 E-value=6e-06 Score=70.60 Aligned_cols=42 Identities=26% Similarity=0.430 Sum_probs=39.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
++.+++++|++||||||++..|+.++...|++|.++..|.+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 788999999999999999999999999989999999999765
No 62
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.07 E-value=1.1e-06 Score=70.30 Aligned_cols=37 Identities=16% Similarity=0.413 Sum_probs=31.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
+..+++|+|+||||||||++.|..++....+.+.+-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 72 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLG 72 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence 5678999999999999999999999987666665543
No 63
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.07 E-value=2.6e-06 Score=68.59 Aligned_cols=42 Identities=29% Similarity=0.312 Sum_probs=33.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
..++.+|+|+|+|||||||+++.|...+.. ...+|+.|.+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~---~~~~Is~D~~R~ 71 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQG---NVIVIDNDTFKQ 71 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTT---CCEEECTHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEechHhHH
Confidence 446889999999999999999999887642 367777776553
No 64
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.06 E-value=3.3e-06 Score=62.40 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
+|+|.|++||||||+++.|.+.+...|..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 6999999999999999999999987775543
No 65
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.06 E-value=3e-06 Score=61.58 Aligned_cols=37 Identities=27% Similarity=0.478 Sum_probs=28.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
|.+|+|+|++||||||+++.|.+. .. ...+++.|.+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~--~~--~~~~i~~d~~r 38 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK--NP--GFYNINRDDYR 38 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH--ST--TEEEECHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh--cC--CcEEecHHHHH
Confidence 678999999999999999999873 11 25667766543
No 66
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.06 E-value=2.4e-06 Score=64.76 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=24.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
-.+..+++|+|||||||||+++.|..++.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34567999999999999999999999875
No 67
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.06 E-value=6.5e-07 Score=67.23 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=30.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
+|+|+|++||||||+++.|.+.+...|..+.++..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~ 37 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP 37 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 789999999999999999999998777666666543
No 68
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.05 E-value=1.1e-06 Score=68.35 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=29.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
+..+++|+|+||||||||++.|..++....+.+.+-
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 64 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLE 64 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 456899999999999999999999987765555553
No 69
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.05 E-value=2.6e-06 Score=63.27 Aligned_cols=37 Identities=30% Similarity=0.468 Sum_probs=30.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
+++.+|+|+|++||||||+++.|.+. | +.+++.|.++
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~----g--~~~id~d~~~ 42 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW----G--YPVLDLDALA 42 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT----T--CCEEEHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC----C--CEEEcccHHH
Confidence 45789999999999999999999875 3 5677777654
No 70
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.05 E-value=2.8e-06 Score=64.64 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=25.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
.++.+|+|+|||||||||+++.|...+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 35679999999999999999999988753
No 71
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.04 E-value=2.7e-06 Score=62.49 Aligned_cols=34 Identities=35% Similarity=0.460 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
+|+|+|++||||||+++.|.+.+...|. .++..|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~--~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGY--FVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTC--CEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC--eEEEEe
Confidence 6899999999999999999999876663 344444
No 72
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.04 E-value=5.9e-06 Score=70.61 Aligned_cols=44 Identities=27% Similarity=0.496 Sum_probs=40.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcC-CCCceeecCCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDK-QDNPYVINLDPACR 67 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~-g~~v~vv~lD~~~~ 67 (147)
.++.+|+++|.+|+||||++..|+..+... |.+|.++..|++..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~ 142 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRP 142 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 468899999999999999999999999988 99999999998653
No 73
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.04 E-value=3.7e-06 Score=63.02 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=30.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
...++.+|+|+|++||||||+++.|.+.+. ..+++.|.
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~-----~~~i~~d~ 53 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLG-----IPQISTGE 53 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHHT-----CCEEEHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC-----CcEEehhH
Confidence 455678999999999999999999998773 33555544
No 74
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.03 E-value=9.9e-07 Score=71.14 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=30.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
+..+++|+||||||||||++.|..++....+.+.+-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G 69 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDN 69 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECC
Confidence 5678999999999999999999999877655555433
No 75
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.03 E-value=1.5e-06 Score=69.33 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=30.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
+..+++|+||||||||||++.|..++....+.+.+-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~ 66 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 66 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 567999999999999999999999988765556553
No 76
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.03 E-value=3e-06 Score=64.36 Aligned_cols=43 Identities=19% Similarity=0.393 Sum_probs=34.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh-cCCCCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY-DKQDNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~-~~g~~v~vv~lD~~~ 66 (147)
.++.+|+|+|++||||||+++.|.+.+. ..|..+.+++.|...
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 4578999999999999999999999997 556566666655543
No 77
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.03 E-value=1.7e-06 Score=68.29 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=29.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
.+++|+||||||||||++.|..++....+.+.+-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 58 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLN 58 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 6899999999999999999999987765556553
No 78
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.02 E-value=3.5e-06 Score=64.85 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=28.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
.+..+++|+|||||||||+++.|...+. | .+.+ ..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~p--G-~i~~-g~~ 56 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEFP--N-YFYF-SVS 56 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHST--T-TEEE-CCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC--C-cEEE-eec
Confidence 3567899999999999999999999873 3 4555 443
No 79
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.02 E-value=3.6e-06 Score=63.76 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
+.+|+|+|++||||||+++.|.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 80
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=3.6e-06 Score=63.35 Aligned_cols=51 Identities=29% Similarity=0.361 Sum_probs=28.5
Q ss_pred CCCCCCCCCCCCCCC-CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 10 SGPASSGDHGPEFKS-KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 10 ~~~~~~~~~~~~~~~-~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
+++-+...++..... +..+|+|+|++||||||+++.|.+.+. ..+++.|..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~-----~~~i~~d~~ 59 (199)
T 3vaa_A 8 SSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN-----VPFIDLDWY 59 (199)
T ss_dssp ----------------CCCEEEEECCTTSCHHHHHHHHHHHHT-----CCEEEHHHH
T ss_pred CCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC-----CCEEcchHH
Confidence 344445555555444 456999999999999999999998873 344555543
No 81
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.02 E-value=2e-06 Score=73.55 Aligned_cols=43 Identities=28% Similarity=0.486 Sum_probs=39.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.++.+|+|+|++|+||||++.+|+..+...|.+|.+++.|++.
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 4578999999999999999999999998888999999999874
No 82
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.01 E-value=4.3e-06 Score=61.55 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=29.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
+++.+|+|+|++||||||+++.|.+.+. ..+++.|..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~-----~~~i~~D~~ 39 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR-----LPLLSKDAF 39 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT-----CCEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC-----CeEecHHHH
Confidence 3578999999999999999999998773 334555543
No 83
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.01 E-value=5.1e-06 Score=63.36 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=28.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh-cCCCCceeecCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY-DKQDNPYVINLD 63 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~-~~g~~v~vv~lD 63 (147)
+..+++|+||+|||||||++.++.... ..+..+.++..+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 567999999999999999999984332 233345555544
No 84
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.00 E-value=4.9e-06 Score=61.53 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=19.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHH
Q psy11490 25 KPICLIVLGMAGSGKTSFVKK 45 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~ 45 (147)
++.+++|+|+||||||||++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 578999999999999999995
No 85
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.00 E-value=1.5e-06 Score=68.26 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=32.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCC------ceeecCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDN------PYVINLDPAC 66 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~------v~vv~lD~~~ 66 (147)
+..+++|+|+||||||||++.|..++....+. +.++.+++..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~ 77 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWI 77 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcC
Confidence 56799999999999999999999998764333 4556666543
No 86
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.00 E-value=1.7e-06 Score=68.58 Aligned_cols=35 Identities=23% Similarity=0.507 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|+||||||||++.|..++....+.+.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~ 66 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF 66 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 56799999999999999999999998765555544
No 87
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.00 E-value=3e-06 Score=64.25 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=23.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..++|+|||||||||+++.|...+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 346799999999999999999998874
No 88
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.99 E-value=7.4e-06 Score=66.57 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=39.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
++.+++++|++|+||||++..|+..+...|+++.++..|.+.
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 488999999999999999999999999889999999999865
No 89
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.99 E-value=1.9e-06 Score=68.97 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=30.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
+..+++|+|+||||||||++.|..++....+.+.+-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 84 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIID 84 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEEC
Confidence 567899999999999999999999987765555553
No 90
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.99 E-value=1.8e-06 Score=68.27 Aligned_cols=35 Identities=17% Similarity=0.380 Sum_probs=29.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|+||||||||++.|..++....+.+.+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i 68 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLI 68 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 56789999999999999999999998765444444
No 91
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.99 E-value=1.9e-06 Score=67.22 Aligned_cols=41 Identities=22% Similarity=0.155 Sum_probs=32.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCC------ceeecCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDN------PYVINLDPA 65 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~------v~vv~lD~~ 65 (147)
+..+++|+|++|||||||++.|..++....+. +.++.+++.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~ 79 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 79 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCc
Confidence 56799999999999999999999998765433 445555553
No 92
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.99 E-value=1.9e-06 Score=67.73 Aligned_cols=35 Identities=14% Similarity=0.318 Sum_probs=29.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|+||||||||++.|..++....+.+.+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 65 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 56789999999999999999999998765444444
No 93
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.98 E-value=2.1e-06 Score=68.83 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=29.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|+||||||||++.|..++....+.+.+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~ 78 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 56789999999999999999999998765444443
No 94
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.98 E-value=6.7e-06 Score=67.77 Aligned_cols=45 Identities=18% Similarity=0.364 Sum_probs=37.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
..+..+|+|+|.+|+||||++..|...+...|.+|.++..|+...
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~ 120 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSST 120 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 346789999999999999999999999988899999999997553
No 95
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.98 E-value=2.2e-06 Score=68.35 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=30.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
+..+++|+|++|||||||++.|..++....+.+.+-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 75 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 75 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 567999999999999999999999987765555543
No 96
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.97 E-value=3.4e-06 Score=63.67 Aligned_cols=27 Identities=33% Similarity=0.401 Sum_probs=24.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
++.+|+|+|+|||||||+++.|...+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999998774
No 97
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.97 E-value=7.8e-06 Score=67.84 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=34.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC--CCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA--CRDVP 70 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~--~~~l~ 70 (147)
++++|+|+||+||||||++..|++.+. ..+|+.|.. |+.++
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds~QvYr~~~ 44 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLN-----GEVISGDSMQVYRGMD 44 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTT-----EEEEECCGGGGBTTCC
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCc-----cceeecCcccceeeee
Confidence 467899999999999999999988763 578999987 55543
No 98
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.97 E-value=6.5e-06 Score=64.87 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=29.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
.+|+|+|++||||||+++.|++.+. ..+++.|..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~-----~~~i~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG-----WPVVALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC-----CCEEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC-----CeEEeccHH
Confidence 4799999999999999999998774 567888885
No 99
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.97 E-value=5e-06 Score=64.25 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 14 SSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 14 ~~~~~~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
|||-.+.+. .++.+++|+|||||||||+++.|.+.+.
T Consensus 8 ~~~~~~~~~-~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 8 SSGRENLYF-QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --------C-CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred ccccccCCC-CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 444444332 3567899999999999999999998765
No 100
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.97 E-value=7.5e-06 Score=71.40 Aligned_cols=43 Identities=28% Similarity=0.375 Sum_probs=38.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.++.+|+|+|.+||||||++.+|+.++...|.++.+++.|++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 5688999999999999999999999999889999999999865
No 101
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.96 E-value=2.3e-06 Score=68.24 Aligned_cols=34 Identities=24% Similarity=0.481 Sum_probs=28.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
+..+++|+|+||||||||++.|..++....+.+.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~ 65 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVL 65 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE
Confidence 5679999999999999999999999876544443
No 102
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.96 E-value=5e-06 Score=64.51 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=24.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
++.+|+|+|++||||||+++.|.+.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 468999999999999999999996663
No 103
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.96 E-value=6.7e-06 Score=64.41 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=34.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCC
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~ 68 (147)
...++.+|+++|++||||||+++.|.+.+.. .+.+++.|.+...
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~---~~~~~~~D~~r~~ 71 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG---NIVIIDGDSFRSQ 71 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT---CCEEECGGGGGTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC---CcEEEecHHHHHh
Confidence 3456789999999999999999999988752 3567777776543
No 104
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.96 E-value=2.3e-06 Score=68.96 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=30.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
+..+++|+|+||||||||++.|..++....+.+.+-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 82 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFG 82 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECC
Confidence 5668999999999999999999999877655565543
No 105
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.96 E-value=5.4e-06 Score=60.93 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=27.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
++.+|+++|++||||||+++.|.+.+. ..+++.|
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~-----~~~i~~d 36 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELG-----FKKLSTG 36 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHT-----CEEECHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-----CeEecHH
Confidence 467899999999999999999988763 3455544
No 106
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.95 E-value=1.9e-06 Score=67.01 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=29.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|...+....+.+.+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 68 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 68 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 45689999999999999999999998766555554
No 107
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.94 E-value=6.6e-06 Score=60.60 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=31.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhh-cCCCCceeecCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLY-DKQDNPYVINLD 63 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~-~~g~~v~vv~lD 63 (147)
...++|.||+|+||||+++.++..+. ..|..+.+++..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 56899999999999999999999986 556566666543
No 108
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.94 E-value=9e-06 Score=66.75 Aligned_cols=43 Identities=30% Similarity=0.499 Sum_probs=38.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.+..+|+|+|++|+||||+++.|...+...+.++.++..|+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 4678999999999999999999999998888899999999854
No 109
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.94 E-value=5.6e-06 Score=64.39 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=24.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++|+||||||||||++.|...+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4567999999999999999999999876
No 110
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.94 E-value=5.9e-06 Score=60.98 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=28.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
++.+|+|+|++||||||+++.|.+.+. ..+++.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~-----~~~i~~d~ 42 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG-----YTHLSTGD 42 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC-----CEEEEHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC-----CeEEcHHH
Confidence 567999999999999999999998773 34555554
No 111
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.94 E-value=2.8e-06 Score=64.96 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=33.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~ 68 (147)
.-.+|+|+|++||||||+++.|.+.+ | +.+++.|.+++.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D~~~~~ 49 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVDRIGHE 49 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc---C--CEEEECcHHHHH
Confidence 45789999999999999999998875 3 788999988654
No 112
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.93 E-value=5.4e-06 Score=59.24 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=24.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
.+|+|+|++||||||+++.| +.+ | ..++++|.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~---g--~~~i~~~~ 33 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER---G--AKVIVMSD 33 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT---T--CEEEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC---C--CcEEEHhH
Confidence 47999999999999999999 443 3 34555544
No 113
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.92 E-value=8.8e-06 Score=59.47 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=33.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
+...++|.|++||||||+++.+...+...|.++..++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH
Confidence 4568999999999999999999999987776666666544
No 114
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.92 E-value=9.8e-06 Score=64.36 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=33.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcC-CCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDK-QDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~-g~~v~vv~lD~ 64 (147)
+..+++|+|++|||||||++.++..+... |..+.+++.+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 56799999999999999999999988766 55787877653
No 115
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.91 E-value=5.2e-06 Score=62.13 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=29.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~ 68 (147)
.+|+|+|++||||||+++.|.. + | +.++..|..++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~---g--~~~i~~d~~~~~ 37 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L---G--AYVLDADKLIHS 37 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T---T--CEEEEHHHHHHG
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C---C--CEEEEccHHHHH
Confidence 4799999999999999999988 4 2 777887876543
No 116
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.91 E-value=4.1e-06 Score=61.33 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=19.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
++.+|+|+|++||||||+++.|.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467999999999999999999988764
No 117
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.91 E-value=4.1e-06 Score=61.70 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=28.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.+|+|+|++||||||+++.|.+.+. ..+++.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg-----~~~id~D~~~ 37 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG-----VGLLDTDVAI 37 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT-----CCEEEHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC-----CCEEeCchHH
Confidence 4699999999999999999998774 4466767643
No 118
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.91 E-value=3.1e-06 Score=71.20 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=30.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
+..+++|+|+||||||||++.|..++....+.+.+-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G 89 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG 89 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECC
Confidence 4678999999999999999999999877655555543
No 119
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.90 E-value=7.2e-06 Score=60.97 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=24.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
++.+|+|+|++||||||+++.|.+.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999987
No 120
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.90 E-value=7.2e-06 Score=61.69 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.++|+|++|||||||++.|...+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999884
No 121
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.90 E-value=7.4e-06 Score=60.25 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=28.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
+..|+++|++||||||+++.|.+.+. ..+++.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~-----~~~i~~d~~ 39 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK-----RILYDSDKE 39 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC-----CCEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC-----CCEEEChHH
Confidence 56899999999999999999998873 445666654
No 122
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.90 E-value=1.3e-05 Score=67.55 Aligned_cols=40 Identities=20% Similarity=0.419 Sum_probs=32.2
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
...+++.+|+|+|+|||||||+++.|.+.+ ...+|+.|..
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~ 292 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTL 292 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGS
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchH
Confidence 345678899999999999999999998765 2566777764
No 123
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.89 E-value=9e-06 Score=60.50 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=30.9
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
...++..|+|+|++||||||+++.|.+.+. | ..+++.|...
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~--g--~~~id~d~~~ 46 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAELD--G--FQHLEVGKLV 46 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHHST--T--EEEEEHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhcC--C--CEEeeHHHHH
Confidence 334567899999999999999999988731 2 5666666543
No 124
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.89 E-value=3.6e-06 Score=66.79 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=28.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|..++... +.+.+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~ 58 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQF 58 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEE
Confidence 45689999999999999999999998765 45544
No 125
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.89 E-value=1.2e-05 Score=60.47 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=24.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
+..+++|+|+||||||||++.|+..+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4679999999999999999999886543
No 126
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.89 E-value=1e-05 Score=63.21 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=28.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
++|.+|+|+|++||||||+++.|.+.+. ..+++.|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g-----~~~is~~~ 62 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC-----YCHLSTGD 62 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC-----CEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC-----CeEEecHH
Confidence 4688999999999999999999988763 44455443
No 127
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.89 E-value=8.6e-06 Score=63.96 Aligned_cols=46 Identities=24% Similarity=0.365 Sum_probs=35.2
Q ss_pred CCCCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhc-CCCCceeecCCC
Q psy11490 19 GPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYD-KQDNPYVINLDP 64 (147)
Q Consensus 19 ~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~-~g~~v~vv~lD~ 64 (147)
.|+...++.+|.|.|++||||||+++.|.+.+.. .|.++.++.-.|
T Consensus 14 ~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP 60 (223)
T 3ld9_A 14 AQTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREP 60 (223)
T ss_dssp -----CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCC
Confidence 5677888999999999999999999999999988 787676634344
No 128
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.88 E-value=3.3e-06 Score=70.83 Aligned_cols=35 Identities=17% Similarity=0.368 Sum_probs=29.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+||||||||||++.|+.++....+.+.+
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i 63 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISL 63 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEE
Confidence 46789999999999999999999998776555554
No 129
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.88 E-value=7.3e-06 Score=65.62 Aligned_cols=33 Identities=18% Similarity=0.428 Sum_probs=23.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+.++|+|+||||||||++.|........+.+.+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~ 35 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWN 35 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC--------
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCcccc
Confidence 579999999999999999999998766555544
No 130
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.88 E-value=8.2e-06 Score=60.30 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=29.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
++.+|+|+|++||||||+++.|.+.+. ..+++.|...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~-----~~~i~~d~~~ 47 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYG-----FTHLSTGELL 47 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHT-----CEEEEHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC-----CeEEcHHHHH
Confidence 467999999999999999999998874 4566666543
No 131
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.87 E-value=1.7e-05 Score=69.06 Aligned_cols=48 Identities=27% Similarity=0.449 Sum_probs=38.8
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 20 PEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 20 ~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
+-....+.+|+++|.+||||||+++.|.+.+...+.++.+++.|.+.+
T Consensus 29 ~~~~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~ 76 (520)
T 2axn_A 29 PKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRR 76 (520)
T ss_dssp C---CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHH
Confidence 334557889999999999999999999999987777788888887543
No 132
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.87 E-value=1.8e-05 Score=61.57 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=30.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
..++.+|+|.|++||||||+++.|.+.+.. +..+.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 346789999999999999999999999987 65554
No 133
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.87 E-value=1.4e-05 Score=60.74 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=33.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
+..+++|+|++|||||||+..++..+...+..+.+++.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 45689999999999999998887776666777888877653
No 134
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.87 E-value=8.8e-06 Score=61.07 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=28.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
+++|+|+|++||||||+++.|.. + | ..+++.|..++
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-l---g--~~~id~d~~~~ 37 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-L---G--VPLVDADVVAR 37 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-T---T--CCEEEHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-C---C--CcccchHHHHH
Confidence 36899999999999999999976 2 3 45667776554
No 135
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.87 E-value=2.3e-06 Score=70.16 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=28.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|+||||||||++.|..++....+.+.+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i 113 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRI 113 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEE
Confidence 56789999999999999999999988765444433
No 136
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.86 E-value=1.3e-05 Score=62.56 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=27.2
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
...+++++|+|.||+||||+|.|+.|++.+.
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3556789999999999999999999998873
No 137
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.86 E-value=9.5e-06 Score=63.69 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=23.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
+..+|+|+|++||||||+++.|.+.+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999655
No 138
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.86 E-value=4.2e-06 Score=66.11 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=27.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh--hhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY--LYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~--l~~~g~~v~v 59 (147)
+..+++|+|+||||||||++.|..+ +....+.+.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~ 64 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILL 64 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEE
Confidence 5668999999999999999999997 4443344544
No 139
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.86 E-value=1.7e-05 Score=61.41 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=32.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
+++.+|.|.|++||||||.++.|.+.+...|..+...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 5678999999999999999999999999888776544
No 140
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.86 E-value=5.2e-06 Score=63.74 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=17.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH-Hhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFS-SYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~-~~l~ 51 (147)
+..+++|+|||||||||+++.|. ..+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 56799999999999999999999 7763
No 141
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.85 E-value=8.9e-06 Score=60.23 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
..+++|+|++||||||+++.|..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999999999999976
No 142
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.85 E-value=5.6e-06 Score=69.93 Aligned_cols=35 Identities=11% Similarity=0.337 Sum_probs=29.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+||||||||||++.|+.++....+.+.+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i 62 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEE
Confidence 56799999999999999999999999776555544
No 143
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.85 E-value=5.7e-06 Score=69.25 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=29.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+||||||||||++.|+.++....+.+.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF 62 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEE
Confidence 56789999999999999999999998765444444
No 144
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.84 E-value=1.9e-05 Score=67.14 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=33.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
.+.-+++|+||+||||||+++.|..++....+++.++.-+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 3457899999999999999999999998776777777643
No 145
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.84 E-value=4.9e-06 Score=66.21 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=27.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|+||||||||++.|..++.. .+.+.+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i 78 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKI 78 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEE
Confidence 5679999999999999999999998864 334443
No 146
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.84 E-value=1.3e-05 Score=60.72 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=29.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
++.+|+|+|++||||||+++.|.. + | ..+++.|..++
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l---g--~~~id~D~~~~ 39 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L---G--INVIDADIIAR 39 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T---T--CEEEEHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c---C--CEEEEccHHHH
Confidence 568999999999999999999976 3 3 56777776543
No 147
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.84 E-value=6.3e-06 Score=69.05 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=29.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+||||||||||++.|+.++....+.+.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEE
Confidence 56799999999999999999999998765545544
No 148
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.83 E-value=6.6e-06 Score=69.16 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=29.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+||||||||||++.|+.++....+.+.+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 70 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 70 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEE
Confidence 56799999999999999999999998765444444
No 149
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.82 E-value=1.1e-05 Score=59.57 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+|+|+|++||||||+++.|.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999875
No 150
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.82 E-value=4.9e-06 Score=66.01 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=32.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCC------ceeecCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDN------PYVINLDPA 65 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~------v~vv~lD~~ 65 (147)
+..+++|+|+||||||||++.|...+....+. +.++.+++.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~ 76 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFS 76 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCc
Confidence 56689999999999999999999998765433 455666553
No 151
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.82 E-value=6.5e-06 Score=68.84 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=29.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+||||||||||++.|+.++....+.+.+
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 74 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Confidence 56799999999999999999999998766555544
No 152
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.82 E-value=9.7e-06 Score=61.72 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=24.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+++..|+|+|++||||||+++.|.+.+.
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3556899999999999999999998875
No 153
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.81 E-value=6.8e-06 Score=68.98 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+||||||||||++.|+.++....+.+.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEE
Confidence 45689999999999999999999998766555544
No 154
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.81 E-value=5.3e-06 Score=69.15 Aligned_cols=35 Identities=20% Similarity=0.404 Sum_probs=29.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+||||||||||++.|+.++....+.+.+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~ 59 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE
Confidence 55799999999999999999999998765544444
No 155
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.81 E-value=2.2e-05 Score=65.01 Aligned_cols=38 Identities=29% Similarity=0.428 Sum_probs=32.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
..+.+|+|+||+||||||++..|++.+. ..+|+.|...
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds~q 45 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILP-----VELISVDSAL 45 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSC-----EEEEECCTTT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCC-----CcEEeccccc
Confidence 4578999999999999999999998763 5789999853
No 156
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.80 E-value=1.4e-05 Score=60.74 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
++..|+|+|++||||||+++.|.+.+. ..+++.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~-----~~~i~~d~~~ 39 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH-----AAHLATGDML 39 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC-----CEEEEHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC-----ceEEehhHHH
Confidence 457899999999999999999998874 4556665543
No 157
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.80 E-value=1.8e-05 Score=59.39 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=35.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.+..++|.|++|+||||+++.+.+.+...+..+.+++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 456899999999999999999999998777778888766544
No 158
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.80 E-value=1.1e-05 Score=66.22 Aligned_cols=26 Identities=27% Similarity=0.586 Sum_probs=24.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
+..+++|+||||||||||++.|..++
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45699999999999999999999998
No 159
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.79 E-value=8.1e-06 Score=63.05 Aligned_cols=34 Identities=24% Similarity=0.131 Sum_probs=28.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+|++|||||||++.|... ....+.+..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~ 54 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR 54 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee
Confidence 3568999999999999999999999 766556644
No 160
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.79 E-value=1.8e-05 Score=63.30 Aligned_cols=40 Identities=30% Similarity=0.490 Sum_probs=32.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
..+++++|+|+|++||||||+++.|.. + | +.+++.|..++
T Consensus 71 ~~~~~~iI~I~G~~GSGKSTva~~La~-l---g--~~~id~D~~~~ 110 (281)
T 2f6r_A 71 LPSGLYVLGLTGISGSGKSSVAQRLKN-L---G--AYIIDSDHLGH 110 (281)
T ss_dssp SCTTCEEEEEEECTTSCHHHHHHHHHH-H---T--CEEEEHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH-C---C--CcEEehhHHHH
Confidence 345688999999999999999999984 3 3 67788887643
No 161
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.79 E-value=6.8e-06 Score=65.61 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=23.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
+..+++|+|+||||||||++.|..++
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999999974
No 162
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.79 E-value=1.2e-05 Score=61.48 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=27.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
+++.+|+|+|++||||||+++.|.+.+. ..+++.|.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~-----~~~i~~d~ 40 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE-----LKHLSSGD 40 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS-----SEEEEHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC-----CeEEechH
Confidence 4567899999999999999999988763 44555554
No 163
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.79 E-value=1.5e-05 Score=59.67 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=30.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
+..+++|+|++|||||||+..++. ..+..+.+++.+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 456999999999999999999988 3455688887665
No 164
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.78 E-value=8.9e-06 Score=67.50 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=30.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
...+++|+|++||||||+++.|..++....+.+.+-
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 456899999999999999999999988765555543
No 165
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.78 E-value=5.2e-06 Score=67.38 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=31.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCC------CceeecCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQD------NPYVINLDPA 65 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~------~v~vv~lD~~ 65 (147)
+..+++|+|++|||||||++.|..++....+ .+.++.+++.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~ 109 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSW 109 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCc
Confidence 4578999999999999999999999875433 3445555553
No 166
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.78 E-value=1.2e-05 Score=69.23 Aligned_cols=40 Identities=33% Similarity=0.562 Sum_probs=32.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCC-CceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQD-NPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~-~v~vv~lD~ 64 (147)
+..+++|+|++|||||||++.|+.++...++ .+..++.|+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~ 177 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDP 177 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCc
Confidence 5678999999999999999999999987666 634444444
No 167
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.78 E-value=1.5e-05 Score=66.45 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcC-CCCceeec
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDK-QDNPYVIN 61 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~-g~~v~vv~ 61 (147)
....+++|+|++||||||+++.|..++... .+.+.++.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 456799999999999999999999998865 45665555
No 168
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.78 E-value=1.4e-05 Score=57.84 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=28.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
++|+|+|++||||||+++.|.+.+. ..+++.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg-----~~~id~d~~~ 37 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG-----YEFVDTDIFM 37 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT-----CEEEEHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-----CcEEcccHHH
Confidence 4799999999999999999998874 4566666543
No 169
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.77 E-value=2.2e-05 Score=64.99 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=31.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
++.+|+|+||+||||||++..|++.+. ..+++.|...
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~-----~~iis~Ds~q 40 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALP-----CELISVDSAL 40 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC-----EEEEEECTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC-----CcEEeccchh
Confidence 356899999999999999999998774 6788888864
No 170
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.77 E-value=5e-06 Score=69.31 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=29.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+||||||||||++.|+.++....+.+.+
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 64 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 56799999999999999999999998765545544
No 171
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.77 E-value=2.9e-05 Score=66.24 Aligned_cols=40 Identities=25% Similarity=0.489 Sum_probs=33.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC--CCCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP--ACRDVP 70 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~--~~~~l~ 70 (147)
+++|+|+|||||||||++..|++.+. ..+|+.|. +|+.++
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds~QvYr~l~ 43 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDSMQVYKDIP 43 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCTTTTBSSCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCccceecccc
Confidence 46899999999999999999998885 35899998 566544
No 172
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.76 E-value=1.9e-05 Score=60.75 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=28.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
.++..|+|+|++||||||+++.|.+.+. +.+++.|.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~-----~~~i~~d~ 49 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC-----VCHLATGD 49 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT-----CEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CceecHHH
Confidence 3567899999999999999999998874 45555553
No 173
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.75 E-value=1.8e-05 Score=62.62 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=28.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
|.+|+|+|++||||||+++.|.+.+. ...+++.|.+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~----~~~~i~~D~~ 37 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNP----GFYNINRDDY 37 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST----TEEEECHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCC----CcEEecccHH
Confidence 57899999999999999999987431 2567777743
No 174
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.75 E-value=2.9e-05 Score=57.86 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=31.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
+..++|.|++|+||||+++.++..+...+..+.+++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 36889999999999999999999998777777666543
No 175
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.74 E-value=8.3e-06 Score=65.23 Aligned_cols=33 Identities=33% Similarity=0.535 Sum_probs=27.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
..+++|+|+||||||||++.|+..+ ...+.+.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~ 62 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFI 62 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEE
Confidence 5689999999999999999999988 65545544
No 176
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.74 E-value=1.4e-05 Score=60.89 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=24.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQ 54 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g 54 (147)
.+++|+|++||||||+++.|+.++...|
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHHhhcccCC
Confidence 3689999999999999999999987333
No 177
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.74 E-value=2.3e-05 Score=58.24 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
+|+|+|++||||||+++.|...+. +.+++.|..++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg-----~~~~d~d~~~~ 38 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG-----VPYLSSGLLYR 38 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-----CCEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-----CceeccchHHH
Confidence 899999999999999999998774 55666666553
No 178
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.74 E-value=1.8e-05 Score=59.68 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
.|+|+|++||||||+++.|.+.+. ..+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~-----~~~i~~d~ 33 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE-----IPHISTGD 33 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CCEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcEeeHHH
Confidence 588999999999999999988763 44555544
No 179
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.74 E-value=2.5e-05 Score=65.13 Aligned_cols=38 Identities=26% Similarity=0.367 Sum_probs=32.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.++++|+|+||+||||||++..|++.+. ..+|+.|...
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~-----~eiIs~Ds~q 75 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP-----LEVINSDKMQ 75 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC-----EEEEECCSST
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC-----CcEEcccccc
Confidence 3567999999999999999999998763 6789999874
No 180
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.74 E-value=1.7e-05 Score=69.49 Aligned_cols=49 Identities=22% Similarity=0.215 Sum_probs=40.6
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCc
Q psy11490 9 NSGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNP 57 (147)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v 57 (147)
.-++.+=--|+.|...+..+++|+|++|||||||++.|...+.+..+.+
T Consensus 8 ~~~~~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 8 RYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp ESSTTSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred ecCCCceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 3455566678889999999999999999999999999999887655544
No 181
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.74 E-value=4e-05 Score=57.54 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=32.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
+...|+|+|.+|||||||+.+|...+... .++.++..|+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~ 68 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVV 68 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCC
Confidence 56789999999999999999999887554 56777776653
No 182
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.73 E-value=3.7e-05 Score=61.31 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=38.7
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
...++++|+|+|..|+||||++..|+..+...|.+|.+|.+|+..
T Consensus 37 ~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 37 KITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH 81 (307)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSC
T ss_pred ccCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 344678888889999999999999999999999999999999854
No 183
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.73 E-value=2.6e-05 Score=64.96 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=28.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcC-CCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDK-QDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~-g~~v~v 59 (147)
+.-+++|+||+||||||+++.|..++... ++.+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t 157 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT 157 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE
Confidence 44599999999999999999999999875 444433
No 184
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.73 E-value=2e-05 Score=62.26 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=29.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
+++.+|+|.|++||||||+++.|.+.+. ..+++.|..|+
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg-----~~~~d~g~~~r 45 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALG-----ARYLDTGAMYR 45 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHT-----CEEEEHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCcccCCcHHH
Confidence 3578999999999999999999998874 44555555543
No 185
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.72 E-value=2.9e-05 Score=61.31 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=31.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+.+++.+|.|.|++||||||+++.|.+.+...+.++.+
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~ 60 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHIT 60 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeee
Confidence 34467899999999999999999999999988877333
No 186
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.70 E-value=2.5e-05 Score=56.42 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
.|+|+|++||||||+++.|.+.+. ..+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~-----~~~i~~d~~ 34 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN-----IPFYDVDEE 34 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT-----CCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-----CCEEECcHH
Confidence 689999999999999999998774 445666654
No 187
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.70 E-value=1e-05 Score=68.38 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=27.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+..+++|+||||||||||++.|..++. ..+.+.+
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i 79 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQI 79 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEE
Confidence 567999999999999999999999876 3334443
No 188
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.70 E-value=1.8e-05 Score=69.29 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=29.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+...++|+|+|||||||+++.|..++....+.+.+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 402 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL 402 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 56789999999999999999999998876555554
No 189
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=97.69 E-value=4.2e-05 Score=62.59 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=40.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
...++|+|+|--|.||||++-.|+..|...|.+|.+|.+|+...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~ 89 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHD 89 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCC
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCc
Confidence 36899999999999999999999999999999999999998543
No 190
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.69 E-value=2.1e-05 Score=59.34 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.|+|+|++||||||+++.|.+.+. ..+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~-----~~~i~~d~~~ 35 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG-----IPHISTGDMF 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS-----CCEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcEEeHHHHH
Confidence 588999999999999999987663 4456555433
No 191
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.69 E-value=2.6e-05 Score=68.78 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=36.1
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCC-CCceeecCCCC
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQ-DNPYVINLDPA 65 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g-~~v~vv~lD~~ 65 (147)
...++.+|.|+|.+||||||+++.|.+.+...| ..+.++..|..
T Consensus 392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 392 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp TTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 456778999999999999999999999998766 56667765553
No 192
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.69 E-value=2.5e-05 Score=68.45 Aligned_cols=43 Identities=14% Similarity=0.356 Sum_probs=37.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
.+.+.+|+++|.+||||||+++.|.+.+...|..+.++..|..
T Consensus 369 ~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 369 HKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp GGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred cccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 3457899999999999999999999999888878888877754
No 193
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.69 E-value=1.5e-05 Score=65.49 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=30.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
...++|+|++|||||||++.|..++....+.+.+-.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~ 206 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED 206 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence 468999999999999999999999987666565543
No 194
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.68 E-value=2.6e-05 Score=57.07 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.|+|+|++||||||+++.|.+.+. ..+++.|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~-----~~~~d~d~~~ 39 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD-----LVFLDSDFLI 39 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT-----CEEEEHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC-----CCEEcccHHH
Confidence 689999999999999999998874 4566666543
No 195
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.67 E-value=2.2e-05 Score=69.09 Aligned_cols=42 Identities=14% Similarity=0.342 Sum_probs=34.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCC-CceeecCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQD-NPYVINLDPA 65 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~-~v~vv~lD~~ 65 (147)
.++.+++|+|+|||||||+++.|...+...++ .+.++..|..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 36789999999999999999999999987653 5666766653
No 196
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.66 E-value=3.3e-05 Score=67.04 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=32.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
.+++|+|+||||||||++.|..++....+.+.+-..+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 79999999999999999999999988777777655443
No 197
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.65 E-value=3.5e-05 Score=55.90 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=27.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
..|+|+|++||||||+++.|.+.+. ..+++.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg-----~~~id~D~~ 41 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK-----LEVLDTDMI 41 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT-----CCEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEChHH
Confidence 4899999999999999999998874 345555543
No 198
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.64 E-value=2.7e-05 Score=56.86 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=23.0
Q ss_pred CCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 16 GDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 16 ~~~~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.++......+...|+|+|.+|+|||||++.|...
T Consensus 11 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 11 RENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp --------CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cccccccccceeEEEEECcCCCCHHHHHHHHHcC
Confidence 3333334456688999999999999999999754
No 199
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.64 E-value=2.8e-05 Score=61.06 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=28.9
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcC----CCCceee
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDK----QDNPYVI 60 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~----g~~v~vv 60 (147)
..++..+|.|.|++||||||.++.|.+.+... |.++.+.
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 33567899999999999999999999999877 7666543
No 200
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.61 E-value=4.1e-05 Score=58.99 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=30.7
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
-...++.+|+|+|++||||||+++.|...+. +.+++.|..+
T Consensus 11 ~~~~~~~~i~i~G~~gsGKst~~~~l~~~lg-----~~~~d~d~~~ 51 (236)
T 1q3t_A 11 DDKMKTIQIAIDGPASSGKSTVAKIIAKDFG-----FTYLDTGAMY 51 (236)
T ss_dssp ---CCCCEEEEECSSCSSHHHHHHHHHHHHC-----CEEEEHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHHcC-----CceecCCCee
Confidence 3556778999999999999999999988763 4556666554
No 201
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.60 E-value=3.4e-05 Score=58.88 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.|+|+|||||||||+++.|.....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999987764
No 202
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.59 E-value=4.4e-05 Score=62.03 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=29.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
+-.+++|+|++||||||+++.|.... .+.++.|+.-|.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~ 40 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEF 40 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEecC
Confidence 34689999999999999999998875 344566665443
No 203
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.59 E-value=4e-05 Score=68.12 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=33.1
Q ss_pred CCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCc
Q psy11490 18 HGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNP 57 (147)
Q Consensus 18 ~~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v 57 (147)
|..+.-.+..+++|+||||||||||++.|..++....+.+
T Consensus 95 ~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 95 HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp ECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred cCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 3444556788999999999999999999999988766555
No 204
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.58 E-value=1.6e-05 Score=69.53 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=28.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
+...++|+|+|||||||+++.|..++....+.+.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~ 401 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEE
Confidence 4678999999999999999999999876544443
No 205
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.58 E-value=7e-05 Score=59.10 Aligned_cols=28 Identities=11% Similarity=0.199 Sum_probs=24.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
+..+++|+|++|||||||+..++..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 5679999999999999999999986654
No 206
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.58 E-value=5.6e-05 Score=57.31 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=29.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh--hhc----CCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY--LYD----KQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~--l~~----~g~~v~vv~lD~ 64 (147)
+..+++|+|++|||||||+..++.. +.. .+..+.+++.+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4569999999999999999999884 322 233466665544
No 207
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.58 E-value=6.2e-05 Score=53.92 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=24.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
.+..++|.|++|+||||+++.+.+.+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3556899999999999999999998865
No 208
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.57 E-value=6.7e-05 Score=58.15 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=28.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQD 55 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~ 55 (147)
++.+|.+.|++||||||.++.|.+.+...|.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4679999999999999999999999998886
No 209
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.56 E-value=2.9e-05 Score=67.60 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=28.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+..++|+|++||||||+++.|..++....+.+.+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giiti 293 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSI 293 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEE
Confidence 45579999999999999999999999765544444
No 210
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.55 E-value=4.2e-05 Score=58.26 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=27.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
...|+|+|++||||||+++.|.+.+. ..+++.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~-----~~~i~~d~ 38 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG-----LAHLSTGD 38 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC-----CEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC-----ceEEehhH
Confidence 35799999999999999999998873 45566554
No 211
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=97.55 E-value=9.3e-05 Score=57.47 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=37.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
++|+|.|..|+||||++..|+..+...|.+|.+|.+|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~ 42 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKAD 42 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCC
Confidence 46778899999999999999999999999999999998654
No 212
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.54 E-value=9.8e-05 Score=61.68 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=34.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
+..++.|.|++|||||||+..++..+...++.+.+++.+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 4679999999999999999999999888888888886654
No 213
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.54 E-value=5.7e-05 Score=58.81 Aligned_cols=45 Identities=22% Similarity=0.371 Sum_probs=36.6
Q ss_pred CCCCCCEEEEEE-cCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 21 EFKSKPICLIVL-GMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 21 ~~~~~~~~I~I~-G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
|.+++.++|+|+ +..|+||||++..|+..+...|.+|.+|.+|+.
T Consensus 1 m~~~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 1 MLRAKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp ----CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCCCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 345566788887 577999999999999999988999999999985
No 214
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.53 E-value=7.8e-05 Score=65.12 Aligned_cols=43 Identities=2% Similarity=-0.025 Sum_probs=34.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhc-CC-CCceeecCCC
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYD-KQ-DNPYVINLDP 64 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~-~g-~~v~vv~lD~ 64 (147)
..++..+|.++|.|||||||+++.|.+.|.. .| +.+.++..|.
T Consensus 391 ~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 391 RPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 3456789999999999999999999999986 43 4556766655
No 215
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.53 E-value=5.6e-05 Score=54.34 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=21.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.+...|+|+|.+|+|||||++.+...
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhC
Confidence 35678999999999999999998753
No 216
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.53 E-value=5.5e-05 Score=55.15 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 12 PASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 12 ~~~~~~~~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
|.++.....+.......|+|+|.+|+|||||+++|...
T Consensus 2 ~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 2 PLGSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp ---------CCCSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcchhhhcCcccccceEEEEECcCCCCHHHHHHHHHcC
Confidence 44444333344455678999999999999999998753
No 217
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.53 E-value=6.8e-05 Score=55.27 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=24.1
Q ss_pred CCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 18 HGPEFKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 18 ~~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
++.+.+.+...|+|+|.+|+|||||++++...
T Consensus 12 ~~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 12 ENLYFQGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp ----CCCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCCCCCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 33445667789999999999999999887754
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.52 E-value=5.5e-05 Score=64.40 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=27.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
.+.+++|+|++|||||||++.|...+....+.+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~ 101 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAK 101 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEE
Confidence 3459999999999999999999998776554443
No 219
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.52 E-value=3.9e-05 Score=67.13 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=29.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
+..+++|+|++|||||||++.|...+....+.+.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 326 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITADEGSVT 326 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 4568999999999999999999999887655554
No 220
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.51 E-value=6e-05 Score=57.79 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
.|+|+|++||||||+++.|.+.+. ..+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg-----~~~i~~dd 33 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS-----LAHIESGG 33 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-----CEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CeEEchHH
Confidence 689999999999999999998873 35566554
No 221
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.51 E-value=6.4e-05 Score=56.98 Aligned_cols=37 Identities=30% Similarity=0.473 Sum_probs=34.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 29 LIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 29 I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
|+|.|..|+||||++..|+..+...|.+|.+|.+|+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6669999999999999999999999999999999995
No 222
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.51 E-value=8.6e-05 Score=66.39 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=32.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
.++.+|.|+|.+||||||+++.|.+.+...|..+..+.-|
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 3688999999999999999999999997766555555433
No 223
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.50 E-value=1.3e-05 Score=70.13 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=28.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
+...++|+|||||||||+++.|..++....+.+.
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 399 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE
Confidence 5678999999999999999999999876544443
No 224
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.50 E-value=2.1e-05 Score=69.17 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=29.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
+...++|+|+|||||||+++.|..++....+.+.+
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i 402 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV 402 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEE
Confidence 46789999999999999999999998776545544
No 225
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.50 E-value=5.1e-05 Score=66.24 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=31.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCC------ceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDN------PYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~------v~vv~lD~ 64 (147)
+..+++|+|++|||||||++.|...+....+. +.++.+|.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~ 356 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYI 356 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCC
Confidence 45789999999999999999999998765444 34555554
No 226
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.50 E-value=6e-05 Score=57.07 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
.|+|+|++||||||+++.|.+.+. ..+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g-----~~~i~~d~ 33 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG-----IPQISTGD 33 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC-----CCEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CeEEeHHH
Confidence 589999999999999999998772 34555544
No 227
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.49 E-value=0.00011 Score=55.32 Aligned_cols=39 Identities=31% Similarity=0.342 Sum_probs=31.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
+.+.|+|+|.+|||||||+.++...+... ..+.++..|.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~ 75 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDV 75 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEET
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCC
Confidence 46789999999999999999999876544 4577776664
No 228
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.49 E-value=7e-05 Score=61.64 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=25.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQ 54 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g 54 (147)
...++|+|+||||||||++.|..++....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 57899999999999999999999987654
No 229
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.49 E-value=6.8e-05 Score=55.19 Aligned_cols=38 Identities=32% Similarity=0.481 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCCC-CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 12 PASSGDHGPEFKS-KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 12 ~~~~~~~~~~~~~-~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
+-|++.++++... +...|+|+|.+|+|||||++++...
T Consensus 6 ~~~~~~~~~~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 6 HHSSGRENLYFQGPLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp --------------CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cccchhhhHHhCCCceEEEEEECCCCCcHHHHHHHHHhC
Confidence 4566667666444 4578999999999999999988754
No 230
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.49 E-value=1.6e-05 Score=69.70 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=27.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCc
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNP 57 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v 57 (147)
+..+++|+|+|||||||+++.|..++....+.+
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i 401 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 401 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE
Confidence 456899999999999999999999987654333
No 231
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.48 E-value=8.3e-05 Score=53.74 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
+...+...|+|+|.+|+|||||++++...
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34456678999999999999999998854
No 232
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.48 E-value=5.7e-05 Score=56.94 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=29.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
++.+|+|+|++||||||+++.|.+.+. +.+++.|..++
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g-----~~~~~~d~~~~ 39 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELS-----MIYVDTGAMYR 39 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTT-----CEEEEHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC-----CceecCChHHH
Confidence 457899999999999999999988763 45666666543
No 233
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.47 E-value=1.9e-05 Score=69.49 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=27.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCc
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNP 57 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v 57 (147)
+...++|+|+|||||||+++.|..++....+.+
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 412 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEE
Confidence 567999999999999999999999887654333
No 234
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.47 E-value=0.0001 Score=61.10 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=35.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
+..++.|.|++|||||||+..++..+...+..+.+++.+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA 100 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 45689999999999999999999888777888999887753
No 235
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.47 E-value=8e-05 Score=57.44 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=24.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
++.+|+|.|..||||||+++.|.+.+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 468999999999999999999999885
No 236
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.46 E-value=8e-05 Score=53.51 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=24.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
.+..++|.|++|+||||+++.+.+.+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3556799999999999999999998865
No 237
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=97.46 E-value=0.00013 Score=57.60 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=37.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
++|.|.|..|+||||++..|+..+...|.+|.+|.+|+...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~ 43 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKAD 43 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSC
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 57778899999999999999999998999999999998653
No 238
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.46 E-value=7.5e-05 Score=53.30 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=23.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.......|+|+|.+|+|||||++++...
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcC
Confidence 3445688999999999999999998754
No 239
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.45 E-value=6.1e-05 Score=66.84 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=28.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCc
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNP 57 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v 57 (147)
+..+++|+|++|||||||++.|...+....+.+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I 413 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 467899999999999999999999987654444
No 240
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.43 E-value=8.3e-05 Score=57.30 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+|+|.||+||||+|.|+.|++.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 688999999999999999998874
No 241
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.43 E-value=0.00013 Score=57.44 Aligned_cols=39 Identities=26% Similarity=0.465 Sum_probs=31.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
..+++.|++|+||||+++.+.+.+...+..+..+++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 479999999999999999999998765555666655443
No 242
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.43 E-value=7.8e-05 Score=56.15 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 9 NSGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.+++.++..|-.+.......|+|+|.+|+|||||++++...
T Consensus 11 ~~~~~~~~~~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 11 SSGLVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp ----------------CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cCCccCCCCCCCcccceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34445554454444556788999999999999999999864
No 243
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.43 E-value=7.4e-05 Score=59.31 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=27.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
...|+|+|++||||||+++.|.+.+. ..++..|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg-----~~~~d~d~~ 82 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG-----YTFFDCDTL 82 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT-----CEEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC-----CcEEeCcHH
Confidence 56899999999999999999998774 344554443
No 244
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.42 E-value=0.0001 Score=62.82 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=32.7
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
...++.+|+++|.+||||||+++.|.+.+.....+...++.|.
T Consensus 35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~ 77 (469)
T 1bif_A 35 MTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ 77 (469)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecch
Confidence 3456789999999999999999999998876655555555444
No 245
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.42 E-value=4.3e-05 Score=59.82 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=24.8
Q ss_pred CCCCCCCC--CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 16 GDHGPEFK--SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 16 ~~~~~~~~--~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.++.++.. +++.+|+|.|+.||||||+++.|.+.+.
T Consensus 12 ~~~~~~~~~~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 12 CPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -----------CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCCcccccccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 33444433 3578999999999999999999998874
No 246
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.42 E-value=9e-05 Score=54.29 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
+.+|+|++||||||++.+|...+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 8899999999999999999887754
No 247
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.41 E-value=0.00018 Score=53.25 Aligned_cols=40 Identities=30% Similarity=0.335 Sum_probs=34.8
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 27 ICLIVL-GMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 27 ~~I~I~-G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
++|.|+ +..|+||||++..|+..+...|.+|.++.+|+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~ 42 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQM 42 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 456666 6788999999999999999999999999999755
No 248
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.41 E-value=9.5e-05 Score=59.76 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=26.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
...+++++|+||||||||++.|. .+....+.+.+
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEELRTQEVSE 197 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence 45689999999999999999999 77665555554
No 249
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.40 E-value=0.00012 Score=56.92 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=35.9
Q ss_pred CCCCCCEEEEE-EcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 21 EFKSKPICLIV-LGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 21 ~~~~~~~~I~I-~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
|..+++++|+| .+-.|+||||++..|+..+. .|.+|.+|.+|+..
T Consensus 22 ~~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~ 67 (267)
T 3k9g_A 22 MDNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQA 67 (267)
T ss_dssp ----CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTC
T ss_pred CCCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence 34456677777 56788999999999999999 89999999999865
No 250
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.40 E-value=8.7e-05 Score=64.77 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=28.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDN 56 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~ 56 (147)
.+..+++|+|+||||||||++.|...+....+.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 466799999999999999999999988654444
No 251
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.40 E-value=9.3e-05 Score=54.28 Aligned_cols=30 Identities=33% Similarity=0.459 Sum_probs=23.3
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 20 PEFKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 20 ~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
++..++...|+|+|.+|+|||||++++...
T Consensus 16 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 16 PRGSKEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccCCCCccEEEEECCCCCCHHHHHHHHHcC
Confidence 334556788999999999999999998753
No 252
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.39 E-value=0.00017 Score=52.14 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=24.7
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
|.......|+|+|.+|+|||||+++|...
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 44556788999999999999999998764
No 253
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.38 E-value=0.00021 Score=57.14 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=29.1
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
..+.|..+++.||+|+|||++++.+++.+. ..+..++
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~---~~~i~v~ 68 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMG---INPIMMS 68 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHT---CCCEEEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCEEEEe
Confidence 345677899999999999999999999883 3344444
No 254
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.38 E-value=0.0001 Score=54.59 Aligned_cols=26 Identities=19% Similarity=0.561 Sum_probs=22.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
...++|+|++|||||||++.+.....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999987654
No 255
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.38 E-value=9.4e-05 Score=56.78 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 20 PEFKSKPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 20 ~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
.......+.|+|+|.+|+|||||++.|...-
T Consensus 23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 3344567899999999999999999987643
No 256
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.37 E-value=0.00014 Score=58.17 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=31.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
+..++|.|++|+||||+++.+.+.+...+..+..++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 456889999999999999999999876666666666443
No 257
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.37 E-value=9e-05 Score=53.92 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=21.4
Q ss_pred CCCCCCCCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 19 GPEFKSKPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 19 ~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
.++...+...|+|+|.+|+|||||++++..
T Consensus 14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp -------CEEEEEEEETTSSHHHHHHHHHT
T ss_pred ccCCCCceeEEEEECCCCCCHHHHHHHHhc
Confidence 334555678999999999999999999874
No 258
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.37 E-value=0.00027 Score=55.93 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=36.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
...|.+.|++|+||||++-.++..+...|.+|.++.+|+.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q 45 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETH 45 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence 4679999999999999999999999999999999999983
No 259
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.36 E-value=6.8e-05 Score=60.47 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=25.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
...+++++|+||||||||++.|........+.+.+
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 35689999999999999999999888765555544
No 260
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.36 E-value=0.00011 Score=56.68 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
-++|.||+|+||||+++.++..+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999998875
No 261
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.36 E-value=9e-05 Score=54.29 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINL 62 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~l 62 (147)
.++|.|++|+||||+++.+.+.+...+....++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 74 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence 38999999999999999999887554433434433
No 262
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.35 E-value=0.0003 Score=55.43 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=26.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQ 54 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g 54 (147)
..+..++|.|++|+|||++++.+++.+...+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~ 95 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLG 95 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4456799999999999999999999887644
No 263
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.33 E-value=0.00026 Score=54.31 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=29.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhh-----cCC-CCceeecCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLY-----DKQ-DNPYVINLDPA 65 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~-----~~g-~~v~vv~lD~~ 65 (147)
+.+++|+|++|||||+++..+..... ..| +.+.+.++|..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL 50 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGL 50 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTB
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCc
Confidence 45889999999999999988654442 456 66667776643
No 264
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.33 E-value=9.5e-05 Score=55.15 Aligned_cols=40 Identities=25% Similarity=0.173 Sum_probs=25.0
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 10 SGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
++|++-.++.-+.......|+|+|.+|+|||||++.+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 9 SGVDLGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp ----------CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccccccccccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 4555554444445556788999999999999999998763
No 265
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.33 E-value=0.00011 Score=60.86 Aligned_cols=30 Identities=10% Similarity=0.076 Sum_probs=26.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQ 54 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g 54 (147)
+..+++|+|++|||||||++.|..+.....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~ 99 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASADI 99 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence 466899999999999999999999987643
No 266
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.33 E-value=0.00011 Score=53.78 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 14 SSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 14 ~~~~~~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
+..+..++...+...|+|+|.+|+|||||++++....
T Consensus 9 ~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 9 HHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp ------------CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccccCcccCCCCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3333334455667899999999999999999987554
No 267
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.32 E-value=0.00023 Score=58.77 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=30.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
....++|+|++||||||+++.+...+...+..+.++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4556889999999999999999988887777766654
No 268
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.32 E-value=0.00017 Score=52.65 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=22.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
......|+|+|.+|+|||||++++...
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcC
Confidence 334578999999999999999998754
No 269
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.32 E-value=0.00013 Score=53.28 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=21.6
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 20 PEFKSKPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 20 ~~~~~~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
++.......|+|+|.+|+|||||++++..
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 33555677899999999999999998864
No 270
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.31 E-value=2e-05 Score=61.92 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=26.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+++|+|||||||||+++.|...+....+.+.+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~ 60 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHF 60 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEE
Confidence 356899999999999999999999877666554
No 271
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.31 E-value=0.00022 Score=57.77 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=33.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
+..+++|+|+||+|||||+..++......+..+.+++++.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~ 106 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 106 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 4679999999999999999999877766666788888763
No 272
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.31 E-value=0.00021 Score=58.93 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=24.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
+..+++|+|++|||||||+..++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999999887
No 273
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.31 E-value=0.00025 Score=50.75 Aligned_cols=35 Identities=11% Similarity=0.160 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
-|+|.|++|+|||++++.+.......+..+. ++..
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~ 60 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL 60 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence 4789999999999999999888765554444 5443
No 274
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.30 E-value=0.00014 Score=57.87 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
-+++.||+||||||+++.++..+..
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCC
Confidence 3999999999999999999988754
No 275
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.30 E-value=0.00032 Score=56.56 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=38.9
Q ss_pred CCCEEEEEEcC-CCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCC
Q psy11490 24 SKPICLIVLGM-AGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68 (147)
Q Consensus 24 ~~~~~I~I~G~-SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~ 68 (147)
.++++|+|+|+ +|+||||++..|+..+...|.+|.+|.+|.....
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~ 147 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGY 147 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCC
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCcc
Confidence 35678888886 7999999999999999999999999999986543
No 276
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.30 E-value=0.00013 Score=53.71 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=23.4
Q ss_pred CCCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 13 ASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 13 ~~~~~~~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
-|||--.++...+...|+|+|.+|+|||||++++...
T Consensus 10 ~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 10 HSSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp -----------CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred cccccccccccCCceEEEEECcCCCCHHHHHHHHhcC
Confidence 3555555666667889999999999999999998754
No 277
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.30 E-value=0.00023 Score=59.24 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=34.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
+..++.|.|++||||||||..++..+...|..+.+++.+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4568999999999999999999988877788899988754
No 278
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.29 E-value=0.00019 Score=55.57 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=23.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+.-++|.|++|+||||+++.+...+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 45699999999999999999998874
No 279
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.29 E-value=0.00014 Score=59.05 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+..+++.||+|+||||+++.++..+.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45789999999999999999999883
No 280
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.29 E-value=0.00023 Score=54.14 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
.|.|-|.-||||||.++.|.++|...|..+.+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6889999999999999999999999987765543
No 281
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.29 E-value=0.00037 Score=53.19 Aligned_cols=43 Identities=14% Similarity=0.077 Sum_probs=33.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec--CCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN--LDPAC 66 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~--lD~~~ 66 (147)
.+..+++++|+.||||||.+..++..+...|.+|.++. .|..+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~ 50 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRY 50 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccc
Confidence 44689999999999999999999988888888999885 67654
No 282
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.28 E-value=0.00041 Score=55.19 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=38.3
Q ss_pred CCCEEEEEEcC-CCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 24 SKPICLIVLGM-AGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 24 ~~~~~I~I~G~-SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
.++++|+|+++ +|+||||++..|+..+...|.+|.+|.+|....
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~ 124 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKP 124 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSC
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCc
Confidence 34678888876 799999999999999999999999999997653
No 283
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.28 E-value=0.00025 Score=53.73 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=30.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh-hhcCCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY-LYDKQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~-l~~~g~~v~vv~lD~ 64 (147)
+..++.|+|++|+|||+||..++.. +...+..+.+++++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 4569999999999999999887644 444456687877664
No 284
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.27 E-value=0.00029 Score=52.20 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=27.7
Q ss_pred CCCCCCCCCCCCCCCC-CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 9 NSGPASSGDHGPEFKS-KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 9 ~~~~~~~~~~~~~~~~-~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.++|+++-+...+... ....|+|+|.+|+|||||++.+...
T Consensus 7 ~~~~~~~~~~~~~~m~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 7 HHHHSSGLVPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp -CCCCTTCCC-----CCEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cccccCCcccCCCCCcccceEEEEECCCCCCHHHHHHHHHhC
Confidence 3566666555555433 3568999999999999999998763
No 285
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.26 E-value=0.0002 Score=53.07 Aligned_cols=25 Identities=20% Similarity=0.515 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
...|+|+|++|||||||++.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4679999999999999999998763
No 286
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.26 E-value=0.00018 Score=56.52 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
-++|.||+||||||+++.+...+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcChHHHHHHHHHHHcC
Confidence 489999999999999999998875
No 287
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=97.26 E-value=0.00039 Score=57.22 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=38.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
....++++.|..|+||||++..++..+...|.+|.++++|+.
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 456788889999999999999999999999999999999994
No 288
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.26 E-value=0.00027 Score=51.75 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
....|+|+|.+|+|||||++++...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 4568999999999999999998753
No 289
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.26 E-value=0.00028 Score=60.94 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=30.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
+..+++|+|++|||||||++.++..+...|..+..+.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4568999999999999999999998887776554443
No 290
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.25 E-value=0.0004 Score=53.25 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=36.0
Q ss_pred CEEEEE-EcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCCC
Q psy11490 26 PICLIV-LGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68 (147)
Q Consensus 26 ~~~I~I-~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~~ 68 (147)
.++|+| .+..|+||||++..|+..+...|.+|.++.+|+....
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~ 45 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRN 45 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence 356666 4567899999999999999999999999999986543
No 291
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.25 E-value=0.00014 Score=62.15 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=29.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~ 61 (147)
+..+++|+|+||||||||++.|+.+.....+.+.+..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G 192 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIG 192 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEec
Confidence 4568999999999999999999999876543444433
No 292
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.24 E-value=0.00021 Score=51.79 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
+...|+|+|++|+|||||+++|..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567899999999999999999976
No 293
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.24 E-value=0.00014 Score=64.53 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=28.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDN 56 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~ 56 (147)
.+..+++|+|+||||||||++.|...+....+.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 567899999999999999999999988665444
No 294
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.23 E-value=0.00026 Score=53.28 Aligned_cols=35 Identities=20% Similarity=0.110 Sum_probs=27.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
..+++++|+.||||||++..+...+...|.++.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 46899999999999999977776666666666665
No 295
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.23 E-value=0.00022 Score=61.54 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=26.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHH--HHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKK--FSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~--L~~~l~~~g~~v~v 59 (147)
+..+++|+|+||||||||++. +...+....+.+.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v 74 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFV 74 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 567999999999999999999 45666643334444
No 296
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.23 E-value=0.00023 Score=51.07 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=22.3
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
|..++...|+|+|.+|+|||||++++...
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 45566788999999999999999988753
No 297
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.22 E-value=0.00037 Score=56.12 Aligned_cols=34 Identities=32% Similarity=0.378 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcC-CCCceeec
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDK-QDNPYVIN 61 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~-g~~v~vv~ 61 (147)
.++|.|++|+||||+++.+.+.+... +..+..++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 89999999999999999999988765 33344444
No 298
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.22 E-value=0.00039 Score=54.42 Aligned_cols=41 Identities=17% Similarity=0.036 Sum_probs=34.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee--cCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI--NLDP 64 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv--~lD~ 64 (147)
.+..+++++|++||||||++..++..+...|.++.++ ..|.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~ 52 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT 52 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc
Confidence 4567999999999999999999998888888888888 4554
No 299
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.21 E-value=0.00025 Score=55.37 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=27.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
-....|+|+|+|||||||++..|.+... .+++-|.
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~------~iIsdDs 66 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH------RLIADDR 66 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC------EEEESSE
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC------eEEecch
Confidence 3567899999999999999999876642 5666555
No 300
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.21 E-value=0.00018 Score=57.51 Aligned_cols=30 Identities=40% Similarity=0.576 Sum_probs=25.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDK 53 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~ 53 (147)
..+..++|.|++|+||||+++.+.+.+...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 346689999999999999999999888654
No 301
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.21 E-value=0.00023 Score=59.83 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=23.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
.+.+++|+||+||||||+++.|...+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45699999999999999999999876
No 302
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.21 E-value=0.00036 Score=59.18 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=33.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhc-CCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYD-KQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~-~g~~v~vv~lD~ 64 (147)
+..+++|+|++|+|||||+..++..+.. .|..|.+++++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4569999999999999999999988765 466888888764
No 303
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.21 E-value=0.00023 Score=51.15 Aligned_cols=24 Identities=13% Similarity=0.320 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
...|+|+|++|+|||||++++...
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999753
No 304
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.20 E-value=0.00017 Score=60.29 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=26.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh-cCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY-DKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~-~~g~~v~v 59 (147)
...+++|+|+||||||||++.|...+. ...+.+.+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~ 249 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSN 249 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCCccc
Confidence 356899999999999999999998876 54444443
No 305
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.20 E-value=0.00028 Score=51.97 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=24.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDK 53 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~ 53 (147)
+..++|.|++|+||||+++.+.+.+...
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3488999999999999999999887643
No 306
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00018 Score=63.82 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=25.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQD 55 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~ 55 (147)
.+++|+|++|||||||++.|..++....+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 56999999999999999999999876543
No 307
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.19 E-value=0.00043 Score=53.08 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=27.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
.+.|.|-|+-||||||.++.|.+.|.. |..+..
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~ 34 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 34 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHC-CCCEEE
Confidence 468999999999999999999999964 555544
No 308
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=97.19 E-value=0.00052 Score=52.15 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=36.9
Q ss_pred CCEEEEEE-cCCCCcHHHHHHHHHHhhhcC-CCCceeecCCCCCCC
Q psy11490 25 KPICLIVL-GMAGSGKTSFVKKFSSYLYDK-QDNPYVINLDPACRD 68 (147)
Q Consensus 25 ~~~~I~I~-G~SGSGKTTl~~~L~~~l~~~-g~~v~vv~lD~~~~~ 68 (147)
+.++|+|+ +-.|+||||++..|+..+... |.+|.+|.+|+....
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~ 48 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGD 48 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCC
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCC
Confidence 45666666 557999999999999999988 999999999987443
No 309
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.18 E-value=0.00013 Score=54.02 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=23.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
-.+...|+|+|++|||||||++.|....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999887654
No 310
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.18 E-value=0.00029 Score=53.96 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=28.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
..+..+++.|++|+|||++++.++..+.. .+..++..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~---~~~~~~~~ 73 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQV---PFLAMAGA 73 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTC---CEEEEETT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEechH
Confidence 34567899999999999999999987743 34444443
No 311
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.18 E-value=0.00021 Score=51.67 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=22.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
...+.|+|+|.+|+|||||++++...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 45568899999999999999988654
No 312
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.18 E-value=0.00034 Score=58.42 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=35.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
+..++.|.|++||||||||..++..+...+..+.+++.+...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~ 114 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL 114 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh
Confidence 456899999999999999999988887778889999887643
No 313
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=97.18 E-value=0.00054 Score=56.46 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=38.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
...++++.|..|+||||++..++..+...|.+|.+++.|+..
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH 56 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 467889999999999999999999999999999999999754
No 314
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.17 E-value=0.00029 Score=55.66 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=35.7
Q ss_pred CEEEEEEc---CCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 26 PICLIVLG---MAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 26 ~~~I~I~G---~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
+++|.|++ ..|+||||++..|+..+...|.+|.+|.+|+..
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 44566665 899999999999999999999999999999865
No 315
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.17 E-value=0.00036 Score=49.83 Aligned_cols=26 Identities=19% Similarity=0.474 Sum_probs=22.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
..+...|+|+|.+|+|||||++++..
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34677899999999999999999875
No 316
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.17 E-value=0.00018 Score=52.19 Aligned_cols=25 Identities=24% Similarity=0.628 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
+...|+|+|.+|+|||||+++|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999998764
No 317
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.17 E-value=0.00038 Score=56.31 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=32.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhh-cCCCCceeecCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLY-DKQDNPYVINLD 63 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~-~~g~~v~vv~lD 63 (147)
...+.+.|++|+|||+++.+++..+. ..|..+.+++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 46788999999999999999999998 888777766643
No 318
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.17 E-value=0.00011 Score=53.93 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=24.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
.....+.|+|+|.+|+|||||++++...-
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 34456789999999999999999987643
No 319
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.16 E-value=0.00024 Score=52.52 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=22.8
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
...+...|+|+|.+|+|||||+++|...-
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34456789999999999999999988643
No 320
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.16 E-value=0.00049 Score=55.83 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=37.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
..++.+.|..|+||||++..++..+...|.+|.+++.|+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 53 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPA 53 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 5788899999999999999999999999999999999993
No 321
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.15 E-value=0.00028 Score=51.45 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=21.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
++...|+|+|.+|+|||||++++..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 4568899999999999999999875
No 322
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.15 E-value=0.00032 Score=49.11 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
+...|+|+|++|+|||||++++...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999988753
No 323
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=97.14 E-value=0.00062 Score=54.73 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=37.5
Q ss_pred CCCEEEEEEcC-CCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 24 SKPICLIVLGM-AGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 24 ~~~~~I~I~G~-SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
.++++|+|+++ +|+||||++..|+..+...|.+|.+|.+|....
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~ 134 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKG 134 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTC
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCC
Confidence 34567777765 799999999999999999999999999998754
No 324
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.14 E-value=0.00029 Score=51.43 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.+...|+|+|.+|+|||||+++|...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 34578999999999999999988764
No 325
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.13 E-value=8.1e-05 Score=71.07 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=27.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCc
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNP 57 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v 57 (147)
....|+|+|+|||||||+++.|.++.....+++
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I 1136 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYDTLGGEI 1136 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEE
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCccCCCCEE
Confidence 456899999999999999999999987754433
No 326
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.13 E-value=0.00038 Score=57.73 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=35.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
+..+++|+|++|+|||||+..++..+...+..|.+++++-.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms 85 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS 85 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 45699999999999999999999888777888999888753
No 327
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.13 E-value=0.00031 Score=48.98 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
...|+++|.+|+|||||++.+...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998754
No 328
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.13 E-value=0.0003 Score=55.34 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=23.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..++|.||+|+||||+++.++..+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998764
No 329
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=97.12 E-value=0.00061 Score=55.56 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=37.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
...++++.|..|+||||++..++..+...|.+|.+++.|+.
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 35677889999999999999999999999999999999986
No 330
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.11 E-value=0.00037 Score=56.48 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=32.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcC------CCCceeecCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDK------QDNPYVINLDPA 65 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~------g~~v~vv~lD~~ 65 (147)
+..++.|+|++||||||||..++...... +..+.+++.+..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 35689999999999999999998765433 556788877653
No 331
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.11 E-value=0.00032 Score=56.04 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=24.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++.||+|+||||+++.++..+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 456899999999999999999998764
No 332
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.11 E-value=0.00041 Score=53.84 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=29.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
.-++|.|++|+|||++++.+...+...+..+..++...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 45789999999999999999988775554555555433
No 333
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.11 E-value=0.00026 Score=54.01 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
+++|+|++|||||||+..+...
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3789999999999999998754
No 334
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=97.10 E-value=0.00061 Score=56.24 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=37.4
Q ss_pred CCCCCEEEEEEc-CCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 22 FKSKPICLIVLG-MAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 22 ~~~~~~~I~I~G-~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
..+++++|+|++ -.|+||||++..|+..+...|.+|.++.+|+
T Consensus 139 ~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~ 182 (373)
T 3fkq_A 139 ENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQ 182 (373)
T ss_dssp CTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCT
T ss_pred cCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 445678888875 8999999999999999988899999999993
No 335
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.10 E-value=0.00035 Score=49.18 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
+...|+|+|.+|+|||||++.+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999998764
No 336
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.09 E-value=0.00059 Score=55.94 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=31.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhc------CCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYD------KQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~------~g~~v~vv~lD~ 64 (147)
+..++.|+|++||||||||..++..... .+..+.+++.+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4679999999999999999999876422 355677877665
No 337
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.08 E-value=0.00036 Score=54.45 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=23.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..++|.||+|+||||+++.++..+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 456799999999999999999988764
No 338
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.08 E-value=0.00043 Score=49.30 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.+...|+|+|.+|+|||||++++...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34678999999999999999998765
No 339
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.08 E-value=0.0004 Score=48.66 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
+...|+|+|.+|+|||||++++...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3578999999999999999998753
No 340
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=97.08 E-value=0.00058 Score=54.10 Aligned_cols=41 Identities=22% Similarity=0.248 Sum_probs=35.6
Q ss_pred CEEEEEE-cCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 26 PICLIVL-GMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 26 ~~~I~I~-G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
+++|.|+ +..|+||||++..|+..+...|.+|.+|.+|+..
T Consensus 4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q 45 (286)
T 2xj4_A 4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQ 45 (286)
T ss_dssp CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 4567776 6789999999999999999999999999999944
No 341
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.08 E-value=0.00081 Score=52.42 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=36.1
Q ss_pred CCEEEEE-EcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 25 KPICLIV-LGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 25 ~~~~I~I-~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
.+++|+| .+..|+||||++..|+..+...|.+|.++.+|+...
T Consensus 17 ~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~ 60 (262)
T 2ph1_A 17 IKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGP 60 (262)
T ss_dssp CSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCC
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 3455655 567789999999999999999999999999998763
No 342
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.08 E-value=0.00038 Score=56.12 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=24.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
.+..++|.|++|+||||+++.+.+.+..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999988754
No 343
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.08 E-value=0.00026 Score=50.93 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
+.+...|+|+|.+|+|||||++++..
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHc
Confidence 34567899999999999999999874
No 344
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.07 E-value=0.00035 Score=50.82 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
+...|+|+|++|+|||||+++|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999754
No 345
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.07 E-value=0.00039 Score=49.61 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=22.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.....|+|+|++|||||||++++...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999988764
No 346
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.07 E-value=0.00038 Score=55.88 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
+. ++|.||+|+||||+++.+++.+
T Consensus 37 ~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 37 PH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHHHHH
Confidence 44 8999999999999999999954
No 347
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.07 E-value=0.00028 Score=52.09 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=21.7
Q ss_pred CCCCCCCCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 19 GPEFKSKPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 19 ~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
.+...++...|+|+|.+|+|||||++.+...+
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 33455567789999999999999998776643
No 348
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.07 E-value=0.00015 Score=68.98 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=27.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCc
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNP 57 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v 57 (147)
+...++|+|+|||||||+++.|.++.....+.+
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I 1090 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 467899999999999999999999887653333
No 349
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.06 E-value=0.00025 Score=56.79 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=25.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
..+..++|.|++|+||||+++.+.+.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45668999999999999999999988854
No 350
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.05 E-value=0.00022 Score=57.68 Aligned_cols=35 Identities=31% Similarity=0.552 Sum_probs=27.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 29 LIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 29 I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
+++.||+|+||||+++.+++.+...+....++.++
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 89999999999999999999886544344444444
No 351
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.05 E-value=0.00046 Score=49.27 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
++...|+|+|.+|+|||||++++...
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhC
Confidence 45678999999999999999998753
No 352
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.05 E-value=0.00044 Score=48.62 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
+...|+|+|.+|+|||||++++...
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999998763
No 353
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.05 E-value=0.00011 Score=68.59 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=29.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCcee
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~v 59 (147)
...+++|+|++|||||||++.|...+....+.+.+
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~ 732 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT 732 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 45689999999999999999999998776555544
No 354
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.04 E-value=0.00044 Score=53.76 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=25.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
++.+|.+.|++||||||.++.|.+.+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5679999999999999999999999976
No 355
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.03 E-value=0.00055 Score=53.47 Aligned_cols=36 Identities=17% Similarity=0.364 Sum_probs=27.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
.+..+++.|++|+|||++++.+.+.+.. .+..++..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~---~~~~i~~~ 84 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANA---PFIKVEAT 84 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC---CEEEEEGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEEcch
Confidence 3456889999999999999999998843 34445443
No 356
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.03 E-value=0.00013 Score=64.41 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhc-CCCCcee
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYD-KQDNPYV 59 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~-~g~~v~v 59 (147)
.++|+|++||||||+++.|...+.+ ..+.+.+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~ 79 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTR 79 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCC
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEE
Confidence 3999999999999999999998755 3344444
No 357
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.03 E-value=8.5e-05 Score=60.87 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCce
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPY 58 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~ 58 (147)
+..+++|+|+||||||||++.|...+....+.+.
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~ 205 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 205 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHhccccccccccee
Confidence 4579999999999999999999887765444443
No 358
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.0005 Score=50.06 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.+...|+|+|++|||||||++.+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998764
No 359
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.03 E-value=0.00025 Score=60.69 Aligned_cols=26 Identities=19% Similarity=0.547 Sum_probs=22.1
Q ss_pred CCEE--EEEEcCCCCcHHHHHHHHHHhh
Q psy11490 25 KPIC--LIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 25 ~~~~--I~I~G~SGSGKTTl~~~L~~~l 50 (147)
+..+ ++|+|+||||||||++.|....
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4556 9999999999999999998763
No 360
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.02 E-value=0.00069 Score=51.30 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=34.9
Q ss_pred CEEEEEE-cCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 26 PICLIVL-GMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 26 ~~~I~I~-G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
.++|+|+ +..|+||||++..|+..+...|.+|.++.+|+..
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 43 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTM 43 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTS
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 3566665 5679999999999999999889999999999864
No 361
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.02 E-value=0.00041 Score=48.91 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
+...|+|+|.+|+|||||++.+..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 356799999999999999998875
No 362
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.02 E-value=0.00045 Score=49.39 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=23.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.......|+|+|.+|+|||||++++...
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhC
Confidence 3455678999999999999999998754
No 363
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.02 E-value=0.00052 Score=48.06 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
+.|+|+|++|+|||||++++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 364
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.02 E-value=0.00059 Score=49.69 Aligned_cols=26 Identities=35% Similarity=0.626 Sum_probs=22.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
......|+|+|.+|+|||||++.|..
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHc
Confidence 44568899999999999999999876
No 365
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.02 E-value=0.00059 Score=48.26 Aligned_cols=25 Identities=24% Similarity=0.692 Sum_probs=21.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
++...|+|+|.+|+|||||++++..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3467899999999999999999864
No 366
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.01 E-value=0.00056 Score=50.21 Aligned_cols=28 Identities=36% Similarity=0.558 Sum_probs=22.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
...+...|+|+|.+|+|||||++++...
T Consensus 24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 24 AKSAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 3455788999999999999999998764
No 367
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.01 E-value=0.00025 Score=51.70 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.+...|+|+|.+|+|||||++.|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999998754
No 368
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.01 E-value=0.00041 Score=49.05 Aligned_cols=26 Identities=27% Similarity=0.449 Sum_probs=22.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.....|+|+|.+|+|||||++++...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34578999999999999999998754
No 369
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.01 E-value=0.00049 Score=50.51 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=21.2
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
....+...|+|+|.+|+|||||++.+...
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34556788999999999999999988743
No 370
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.00 E-value=0.00016 Score=69.05 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=27.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDN 56 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~ 56 (147)
+...++|+|+|||||||+++.|.+++....+.
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~ 474 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYDVLKGK 474 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSCCSEEE
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccccccCc
Confidence 56789999999999999999999998775443
No 371
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=97.00 E-value=0.00093 Score=55.36 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=38.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhh--cCCCCceeecCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLY--DKQDNPYVINLDPA 65 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~--~~g~~v~vv~lD~~ 65 (147)
....+++++.|..|+||||++..++..+. ..|.+|.+++.|+.
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 34457899999999999999999999999 89999999999964
No 372
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.99 E-value=0.00015 Score=69.12 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=27.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDN 56 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~ 56 (147)
+...++|+|+|||||||+++.|.+++....+.
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~ 446 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM 446 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 46789999999999999999999988765433
No 373
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.98 E-value=0.00044 Score=51.52 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=22.8
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
+...+...|+|+|.+|+|||||+++|..
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 20 GDYDYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp -CCSEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred CCcceeEEEEEECcCCCCHHHHHHHHhc
Confidence 3444567899999999999999998874
No 374
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.98 E-value=0.00045 Score=49.54 Aligned_cols=29 Identities=34% Similarity=0.358 Sum_probs=23.8
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
|...+...|+|+|.+|+|||||++++...
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 33445678999999999999999998763
No 375
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.98 E-value=0.00061 Score=53.15 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=24.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
...+..++|.|++|+|||++++.+++.+.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34567899999999999999999998753
No 376
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.98 E-value=0.00056 Score=50.07 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
+...|+|+|.+|+|||||++.+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999988753
No 377
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.98 E-value=0.00041 Score=54.08 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.......|+|+|.+|+|||||++.|...
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCC
Confidence 4456788999999999999999988753
No 378
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.97 E-value=0.00089 Score=51.66 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=34.9
Q ss_pred EEEEE-EcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 27 ICLIV-LGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 27 ~~I~I-~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
++|.| .+..|+||||++..|+..+...|.+|.++.+|+...
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~ 44 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMA 44 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 45555 578899999999999999998899999999998643
No 379
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.97 E-value=0.00046 Score=49.62 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
+...|+|+|.+|+|||||++.|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999999754
No 380
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.97 E-value=0.00053 Score=49.31 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.....|+|+|.+|+|||||++++...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999998753
No 381
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.96 E-value=0.00083 Score=58.51 Aligned_cols=42 Identities=29% Similarity=0.384 Sum_probs=38.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPA 65 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~ 65 (147)
...+++++.|..|+||||++..++..+...|.+|.+|+.|+.
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~ 47 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA 47 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 345688999999999999999999999999999999999984
No 382
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.96 E-value=0.0008 Score=56.85 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=33.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhc-CCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYD-KQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~-~g~~v~vv~lD~ 64 (147)
+..++.|+|++|+|||||+..++..... .|..|.++++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4569999999999999999999887765 466788888764
No 383
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.96 E-value=0.00046 Score=49.21 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
....|+|+|++|+|||||++++...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999998753
No 384
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.96 E-value=0.00065 Score=57.91 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=35.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
+..+++|+|++|+|||||+..++......|..|.+++++...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~ 237 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK 237 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCT
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCH
Confidence 457999999999999999999988877667789998887543
No 385
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.95 E-value=0.00075 Score=49.02 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
+-+.+|+|++||||||++.+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999999998665
No 386
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.95 E-value=0.00057 Score=50.88 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=21.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.++...|+|+|.+|+|||||++++...
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 446789999999999999999988753
No 387
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.95 E-value=0.00049 Score=49.25 Aligned_cols=27 Identities=41% Similarity=0.567 Sum_probs=22.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
......|+|+|.+|+|||||++++...
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcC
Confidence 344578999999999999999988754
No 388
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.95 E-value=0.00059 Score=48.44 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
....|+|+|++|+|||||++++...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcC
Confidence 4568999999999999999988743
No 389
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.94 E-value=0.00064 Score=51.50 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
..+.+.|+|+|.+|+|||||++++...
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456789999999999999999988653
No 390
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.94 E-value=0.00066 Score=57.35 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=27.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhh--hc----CCCCceeecCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYL--YD----KQDNPYVINLDP 64 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l--~~----~g~~v~vv~lD~ 64 (147)
+..++.|+|+||||||||+..++... .. .+..+.+++...
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 45689999999999999999765332 21 233466665443
No 391
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.93 E-value=0.00065 Score=50.60 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=23.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
.+...|+|+|++|+|||||+++|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999988654
No 392
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.93 E-value=0.0011 Score=50.29 Aligned_cols=38 Identities=29% Similarity=0.337 Sum_probs=33.0
Q ss_pred EEEE-EcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCC
Q psy11490 28 CLIV-LGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPAC 66 (147)
Q Consensus 28 ~I~I-~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~ 66 (147)
+|.| .+..|+||||++..|+..+...| +|.++.+|+..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~ 40 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNR 40 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCC
Confidence 3444 57889999999999999999989 99999999864
No 393
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.93 E-value=0.00049 Score=48.54 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
+...|+|+|.+|+|||||++++...-
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 35789999999999999999987643
No 394
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.93 E-value=0.0005 Score=50.22 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
..|+|+|++|+|||||++++...
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 395
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.92 E-value=0.00046 Score=55.64 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=23.6
Q ss_pred CCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 18 HGPEFKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 18 ~~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
|+.+....+-.|+|+|.+|+|||||+++|...
T Consensus 2 ~~~~~~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 2 HHHHHHMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp -----CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45556666779999999999999999988753
No 396
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.91 E-value=0.00047 Score=51.10 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=22.5
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 20 PEFKSKPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 20 ~~~~~~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
.+.......|+|+|.+|+|||||++++..
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 19 SIWSDFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHh
Confidence 33444567899999999999999999864
No 397
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.91 E-value=0.00043 Score=48.72 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
+...|+|+|.+|+|||||++++..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999875
No 398
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.91 E-value=0.00061 Score=48.03 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
...|+|+|++|+|||||++++...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 467999999999999999998753
No 399
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.90 E-value=0.00063 Score=51.79 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=23.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+..+|.|.|++||||||+++.|++.|.
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 356999999999999999999999884
No 400
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.89 E-value=0.0006 Score=57.78 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=28.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcC--CCCceeecC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDK--QDNPYVINL 62 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~--g~~v~vv~l 62 (147)
+..++|.|++|+||||+++.+.+.+... +..+..++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 4568999999999999999999988654 444555543
No 401
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.88 E-value=0.00051 Score=54.08 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=20.8
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHH
Q psy11490 20 PEFKSKPICLIVLGMAGSGKTSFVKKFS 47 (147)
Q Consensus 20 ~~~~~~~~~I~I~G~SGSGKTTl~~~L~ 47 (147)
|+.++..+.|+|+|.+|+|||||++.|.
T Consensus 2 p~~~g~~~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 2 PLGSGFEFTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp -----CEEEEEEEECTTSSHHHHHHHHS
T ss_pred CCcCccEEEEEEECCCCCCHHHHHHHHh
Confidence 4555667889999999999999998864
No 402
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.88 E-value=0.0005 Score=58.23 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 14 SSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 14 ~~~~~~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
|||+.+...++....|+|+|.+|+|||||.++|..
T Consensus 11 ~~~~~~~~~~m~~~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 11 SSGLVPRGSHMGKPVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp ------------CCEEEEECSSSSSHHHHHHHHEE
T ss_pred cCCCCCChhhcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 45554444556677999999999999999999865
No 403
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.88 E-value=0.00068 Score=53.49 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=26.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
...+|.|++||||||+|+.|.+.+. +..++.+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g-----~~~is~gd 41 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG-----IPQISTGD 41 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT-----CCEECHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC-----CCeeechH
Confidence 4789999999999999999998873 44555543
No 404
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=96.88 E-value=0.0018 Score=50.28 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
....+|+|+|.+||||+|++..|...+... .+.++++-.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~--~~~vv~msD 47 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGAD--VCAVLRLSG 47 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTT--TEEEECTHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCC--CceEEEccH
Confidence 456799999999999999999998766432 356666544
No 405
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.87 E-value=0.00071 Score=54.84 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=24.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
..+..+++.||+|+|||++++.++..+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 345789999999999999999999887
No 406
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.87 E-value=0.00058 Score=49.84 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
....|+|+|.+|+|||||++++...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999864
No 407
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.87 E-value=0.0006 Score=47.95 Aligned_cols=24 Identities=46% Similarity=0.643 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
...|+|+|++|+|||||++++...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999988754
No 408
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.86 E-value=0.00083 Score=49.49 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=21.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
..+...|+|+|.+|+|||||++++...
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 345789999999999999999998753
No 409
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.85 E-value=0.0006 Score=48.45 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
+...|+|+|.+|+|||||++++..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 447899999999999999999874
No 410
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.85 E-value=0.00052 Score=50.97 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=20.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHH
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFS 47 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~ 47 (147)
......|+|+|.+|+|||||++++.
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999885
No 411
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.85 E-value=0.00054 Score=49.49 Aligned_cols=29 Identities=24% Similarity=0.180 Sum_probs=23.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
......|+|+|.+|+|||||++.+.....
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 34567899999999999999987776554
No 412
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.85 E-value=0.00061 Score=50.05 Aligned_cols=24 Identities=33% Similarity=0.686 Sum_probs=20.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
....|+|+|.+|+|||||+++|..
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999864
No 413
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.84 E-value=0.00066 Score=49.64 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=23.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
...+...|+|+|.+|+|||||++++...
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 4455688999999999999999998764
No 414
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.84 E-value=0.00078 Score=48.50 Aligned_cols=26 Identities=27% Similarity=0.508 Sum_probs=22.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.+...|+|+|.+|+|||||++++...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34578999999999999999998754
No 415
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.83 E-value=0.00068 Score=50.83 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
....|+|+|.+|+|||||++++...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3578999999999999999998754
No 416
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.83 E-value=0.00091 Score=53.81 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=23.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++.||+|+|||++++.++..+.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 456899999999999999999998764
No 417
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.83 E-value=0.00066 Score=52.81 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=29.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
....||++|..||||||+++.|.+ + | +.+++.|...+
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~---g--~~vidaD~ia~ 44 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-R---G--ASLVDTDLIAH 44 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-T---T--CEEEEHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-C---C--CcEEECcHHHH
Confidence 356899999999999999998876 3 3 77888887544
No 418
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.82 E-value=0.00098 Score=54.34 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=23.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++.||+|+|||++++.+++.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 455789999999999999999998873
No 419
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.81 E-value=0.00085 Score=51.87 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=22.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
......|+|+|.+|+|||||+++|...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCC
Confidence 445688999999999999999998753
No 420
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.81 E-value=0.00079 Score=48.92 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.....|+|+|.+|+|||||++++...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998764
No 421
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.80 E-value=0.0007 Score=48.18 Aligned_cols=24 Identities=29% Similarity=0.639 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
....|+|+|.+|+|||||++++..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999998864
No 422
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.78 E-value=0.0012 Score=48.95 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=24.3
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 21 ~~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
|..+....|+|+|.+|+|||||++++...
T Consensus 4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 44456788999999999999999988753
No 423
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.78 E-value=0.00063 Score=48.86 Aligned_cols=24 Identities=29% Similarity=0.737 Sum_probs=21.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHH
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFS 47 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~ 47 (147)
++...|+|+|++|+|||||++++.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999998886
No 424
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.78 E-value=0.00094 Score=48.99 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
.....|+|+|.+|+|||||+++|...-
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCC
Confidence 346789999999999999999987643
No 425
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.77 E-value=0.00092 Score=52.43 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=22.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
+.+.|+++|++|||||||+++|....
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCC
Confidence 35789999999999999999997653
No 426
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.76 E-value=0.0011 Score=48.08 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
++...|+|+|.+|+|||||++++..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 5678999999999999999999873
No 427
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.76 E-value=0.0009 Score=47.93 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
+...|+|+|.+|+|||||++++...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999988753
No 428
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.75 E-value=0.0011 Score=46.93 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
..|+|+|.+|+|||||++++..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999863
No 429
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.75 E-value=0.0009 Score=58.24 Aligned_cols=28 Identities=36% Similarity=0.375 Sum_probs=24.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
++..++++||||+||||+++.+...+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4568999999999999999999998853
No 430
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.74 E-value=0.0009 Score=53.92 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=24.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
+..++|.||+|+|||++++.+.+.+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 368999999999999999999999864
No 431
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.73 E-value=0.00039 Score=53.86 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=22.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
+..+++.|++|+|||++++.++..+..
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 334889999999999999999988743
No 432
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=96.73 E-value=0.0019 Score=53.34 Aligned_cols=41 Identities=24% Similarity=0.286 Sum_probs=37.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh--cCCCCceeecCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY--DKQDNPYVINLDPA 65 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~--~~g~~v~vv~lD~~ 65 (147)
...++++.|-.|.||||++..|+..+. ..|.+|.+|+.|+.
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 356788889999999999999999999 89999999999995
No 433
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.72 E-value=0.0012 Score=56.49 Aligned_cols=41 Identities=12% Similarity=0.070 Sum_probs=34.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhcC-CCCceeecCCCC
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDK-QDNPYVINLDPA 65 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~~-g~~v~vv~lD~~ 65 (147)
+..++.|+|++|+|||||+..++..+... |..|.+++++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 45699999999999999999998887765 778998887653
No 434
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.00095 Score=50.24 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=23.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.......|+|+|.+|+|||||+++|...
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3345678999999999999999998754
No 435
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.72 E-value=0.00076 Score=54.37 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=20.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.-.+-|+|+|++|+|||||++.|...
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCC
Confidence 34577899999999999999998754
No 436
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.72 E-value=0.00091 Score=49.66 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.....|+|+|.+|+|||||++++...
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 34578999999999999999998653
No 437
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.72 E-value=0.00081 Score=52.71 Aligned_cols=25 Identities=32% Similarity=0.612 Sum_probs=22.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
..++|.||+|+||||+|.+|++.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999884
No 438
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.72 E-value=0.00094 Score=49.14 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=20.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
..+...|+|+|++|+|||||++++..
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34556899999999999999999875
No 439
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=96.70 E-value=0.0017 Score=48.74 Aligned_cols=36 Identities=17% Similarity=0.010 Sum_probs=30.1
Q ss_pred EEEEEEcC-CCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 27 ICLIVLGM-AGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 27 ~~I~I~G~-SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
++|.|++. .|+||||++..|+..+...|.+|.++ |+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~--dp 38 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY--KP 38 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE--CS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE--cc
Confidence 45677775 79999999999999999999888874 64
No 440
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.70 E-value=0.001 Score=46.86 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
..|+|+|.+|+|||||++++..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 5689999999999999998853
No 441
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.70 E-value=0.0012 Score=47.60 Aligned_cols=26 Identities=35% Similarity=0.700 Sum_probs=22.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
++...|+|+|.+|+|||||++++...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 56789999999999999999998753
No 442
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.70 E-value=0.0012 Score=48.03 Aligned_cols=26 Identities=27% Similarity=0.632 Sum_probs=22.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.+...|+|+|++|+|||||++++...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 35688999999999999999988643
No 443
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.69 E-value=0.0011 Score=49.26 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=20.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.+...|+|+|.+|+|||||++++...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999998754
No 444
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.69 E-value=0.0014 Score=52.72 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=29.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~ 64 (147)
+.-++|.|++|+|||++++.+.......+..+..++...
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAA 63 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence 345889999999999999999988765555555565443
No 445
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.69 E-value=0.0012 Score=57.94 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=24.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYDKQ 54 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~~g 54 (147)
..++|.|++|+||||+++.|.+.+....
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 4789999999999999999999887654
No 446
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.69 E-value=0.0015 Score=57.44 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=30.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceee
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv 60 (147)
..+++|.|++|+||||++..+...+...+.++.++
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 56889999999999999999999998888777765
No 447
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.0013 Score=56.18 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=25.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
..|+-+++.||+|+|||+++++++..+..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHTC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35778999999999999999999998853
No 448
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.67 E-value=0.0014 Score=48.23 Aligned_cols=26 Identities=19% Similarity=0.485 Sum_probs=21.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.....|+|+|.+|+|||||++.+...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999998743
No 449
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.67 E-value=0.0011 Score=54.20 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=24.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
..+..++|.|++|+|||++++.++..+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999988763
No 450
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.67 E-value=0.0013 Score=54.40 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
-+.+|+|++||||||+..+|.-.+..
T Consensus 24 g~~~i~G~NGaGKTTll~ai~~al~g 49 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAISFALFG 49 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 37889999999999999998866543
No 451
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=96.67 E-value=0.0018 Score=50.52 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=26.8
Q ss_pred CCCCCCCCCCCCCCCEEEEEEcCC---------CCcHHHHHHHHHH
Q psy11490 12 PASSGDHGPEFKSKPICLIVLGMA---------GSGKTSFVKKFSS 48 (147)
Q Consensus 12 ~~~~~~~~~~~~~~~~~I~I~G~S---------GSGKTTl~~~L~~ 48 (147)
+..+..+.++.......|+|+|.+ |+|||||++++..
T Consensus 5 ~~~~~~~~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 5 HHHSSGRENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp ------CTTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CCCCCccCCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 344445555666777899999999 9999999999986
No 452
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.67 E-value=0.0015 Score=53.32 Aligned_cols=26 Identities=27% Similarity=0.453 Sum_probs=22.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+..+++.|++|+||||+++.+++.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 44688999999999999999998873
No 453
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.66 E-value=0.0012 Score=49.55 Aligned_cols=25 Identities=28% Similarity=0.607 Sum_probs=21.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
.+...|+|+|.+|+|||||++++..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc
Confidence 3467899999999999999999874
No 454
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.66 E-value=0.0015 Score=49.55 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
+-+.+|+|++||||||++.+|.-.+..
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 468999999999999999999766653
No 455
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.65 E-value=0.0012 Score=46.41 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~ 48 (147)
.|+|+|.+|+|||||++++..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999865
No 456
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.65 E-value=0.0015 Score=52.39 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
+..++.|+|++||||||||..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998865
No 457
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.64 E-value=0.0012 Score=55.27 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=24.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
.+.+++|+|++||||||++..+...+..
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 3578999999999999999999887754
No 458
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.63 E-value=0.00058 Score=60.58 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=19.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFS 47 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~ 47 (147)
+..+++|+||||||||||++.+.
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTTH
T ss_pred CCCEEEEEeeCCCCHHHHHHHHH
Confidence 46789999999999999997543
No 459
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.62 E-value=0.00045 Score=56.99 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+++|+|++||||||+++.|...+.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 899999999999999999977765
No 460
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.62 E-value=0.0013 Score=50.18 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=21.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
.......|+|+|.+|+|||||++++..
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHh
Confidence 334457899999999999999998863
No 461
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.62 E-value=0.00085 Score=59.50 Aligned_cols=19 Identities=32% Similarity=0.663 Sum_probs=17.6
Q ss_pred CCEEEEEEcCCCCcHHHHH
Q psy11490 25 KPICLIVLGMAGSGKTSFV 43 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~ 43 (147)
+..+++|+||||||||||+
T Consensus 43 ~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 43 RGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHh
Confidence 5679999999999999997
No 462
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0015 Score=55.97 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=25.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
..|+-|++.||+|+|||+++++++..+..
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~ 241 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGA 241 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 35789999999999999999999998754
No 463
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.61 E-value=0.0016 Score=47.94 Aligned_cols=25 Identities=24% Similarity=0.558 Sum_probs=22.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHH
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFS 47 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~ 47 (147)
.++...|+|+|.+|+|||||++++.
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHC
T ss_pred cCCccEEEEECCCCCCHHHHHHHHH
Confidence 3567889999999999999999885
No 464
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.61 E-value=0.003 Score=48.74 Aligned_cols=45 Identities=22% Similarity=0.138 Sum_probs=31.1
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec--CCCCC
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN--LDPAC 66 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~--lD~~~ 66 (147)
...+..+..|.|+.||||||.+..........+.++.++. +|..+
T Consensus 16 ~~~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~ 62 (195)
T 1w4r_A 16 SKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRY 62 (195)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCG
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccc
Confidence 4456889999999999999554444444455577888885 66655
No 465
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.61 E-value=0.0041 Score=48.60 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=34.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec--CCCCC
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN--LDPAC 66 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~--lD~~~ 66 (147)
..+..+.+++|+-||||||.+-.++......|.+|.++. .|..|
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ 70 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRY 70 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcc
Confidence 455789999999999999999999888888888888884 56544
No 466
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.60 E-value=0.0014 Score=48.62 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
.+...|+++|++|+|||||++++..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4566799999999999999998863
No 467
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.60 E-value=0.00042 Score=51.72 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=22.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.....|+|+|.+|+|||||+++|...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34678999999999999999988654
No 468
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=96.60 E-value=0.0013 Score=54.21 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=35.2
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 27 ICLIVL-GMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 27 ~~I~I~-G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
++|+|+ +-.|+||||++..|+..+...|.+|.+|.+|+...
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~ 43 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCN 43 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCT
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCC
Confidence 345555 78899999999999999999999999999998753
No 469
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.60 E-value=0.0013 Score=48.24 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
....|+|+|.+|+|||||++++...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999988753
No 470
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=96.60 E-value=0.0024 Score=52.82 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=34.7
Q ss_pred CCEEEEEE-cCCCCcHHHHHHHHHHhhh------cCCCCceeecCCCC
Q psy11490 25 KPICLIVL-GMAGSGKTSFVKKFSSYLY------DKQDNPYVINLDPA 65 (147)
Q Consensus 25 ~~~~I~I~-G~SGSGKTTl~~~L~~~l~------~~g~~v~vv~lD~~ 65 (147)
++++|+|+ |-.|+||||++..|+..+. ..|.+|.+|.+|+.
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q 154 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ 154 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 46677666 7889999999999999987 46889999999984
No 471
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.60 E-value=0.0019 Score=50.27 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=24.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
..+|.|.|++||||||+++.|++.+.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 57999999999999999999999874
No 472
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0016 Score=55.78 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=25.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
..|+-|++.||+|+|||+++++++..+..
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~ 241 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNA 241 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCC
Confidence 35789999999999999999999998753
No 473
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.59 E-value=0.0013 Score=52.47 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
..++|.|++|+|||++++.+.+.+.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999987764
No 474
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.58 E-value=0.002 Score=54.47 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCC-Cceee
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQD-NPYVI 60 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~-~v~vv 60 (147)
.++|.|++||||||++..+...+...+. .+.++
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~ 80 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILA 80 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 8999999999999999999999987775 45544
No 475
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.58 E-value=0.0016 Score=49.88 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
....++|+|+||+||||++..|.+.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4568999999999999999988773
No 476
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.58 E-value=0.0014 Score=53.83 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=23.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.+..+++.||+|+|||++++.++..+.
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 345689999999999999999998874
No 477
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.56 E-value=0.0011 Score=56.36 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=23.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
.-.+-|+|+|+||||||||++.|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3456789999999999999999987654
No 478
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.54 E-value=0.0013 Score=61.62 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
+..+++|+|++|||||||++.|..
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 566899999999999999999984
No 479
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.54 E-value=0.0013 Score=47.38 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
..|+|+|.+|+|||||++++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 35899999999999999988753
No 480
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.0015 Score=51.97 Aligned_cols=23 Identities=35% Similarity=0.636 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 29 LIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 29 I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+++.|++|+||||+++.+.+.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998875
No 481
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.53 E-value=0.0017 Score=51.24 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=26.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD 63 (147)
+..++|.|++|+||||+++.+.+.+. ..+..++..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~---~~~~~~~~~ 72 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELG---VNLRVTSGP 72 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHT---CCEEEECTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhC---CCEEEEecc
Confidence 35688999999999999999998774 234445443
No 482
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.52 E-value=0.0029 Score=54.38 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=23.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
.+..++|.||+|+||||+++.+++.+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999887
No 483
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.52 E-value=0.0019 Score=49.57 Aligned_cols=32 Identities=34% Similarity=0.627 Sum_probs=20.5
Q ss_pred CCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 15 SGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 15 ~~~~~~~~~~~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
+++.+.|. +.+-|+|+|.+|+|||+|+.++..
T Consensus 4 ~~~~~~P~--k~~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 4 GGDFGNPL--RKFKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp -----------CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCCC--CcEEEEEECcCCcCHHHHHHHHHh
Confidence 34444332 347899999999999999998864
No 484
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.51 E-value=0.0016 Score=47.94 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
....|+|+|.+|+|||||+++|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999998753
No 485
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.50 E-value=0.0012 Score=54.89 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=27.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecC
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINL 62 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~l 62 (147)
..+++|.|++|+|||||+..++.. .|..+.++++
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 456789999999999999999876 3446667766
No 486
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.50 E-value=0.0012 Score=53.12 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
+...|+|+|++|+|||||+++|...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3457999999999999999999865
No 487
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.48 E-value=0.0048 Score=48.95 Aligned_cols=45 Identities=22% Similarity=0.138 Sum_probs=36.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeec--CCCCC
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN--LDPAC 66 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~--lD~~~ 66 (147)
.+....+.+++|+-||||||.+-.+.......|.++.++. .|..|
T Consensus 15 ~~~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ry 61 (234)
T 2orv_A 15 SKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRY 61 (234)
T ss_dssp ---CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccc
Confidence 4556889999999999999998888887788888898886 77655
No 488
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.47 E-value=0.0037 Score=56.01 Aligned_cols=40 Identities=20% Similarity=0.450 Sum_probs=32.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCCceeecCCCCCC
Q psy11490 28 CLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67 (147)
Q Consensus 28 ~I~I~G~SGSGKTTl~~~L~~~l~~~g~~v~vv~lD~~~~ 67 (147)
.+++.||+|+|||++++.+.+.+...+..+..+++..+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 6899999999999999999999866666677777665554
No 489
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.47 E-value=0.0024 Score=55.75 Aligned_cols=40 Identities=25% Similarity=0.337 Sum_probs=30.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhh--hcCCCCceeecCCCCC
Q psy11490 27 ICLIVLGMAGSGKTSFVKKFSSYL--YDKQDNPYVINLDPAC 66 (147)
Q Consensus 27 ~~I~I~G~SGSGKTTl~~~L~~~l--~~~g~~v~vv~lD~~~ 66 (147)
.-++|+|.+||||||+++.|...+ ......+.++-+|+..
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 457899999999999999987633 2334568888888765
No 490
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.46 E-value=0.0023 Score=48.09 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=21.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSY 49 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~ 49 (147)
.....|+|+|.+|+|||||++++...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 45678999999999999999998754
No 491
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.0018 Score=55.16 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
..|+-+++.||+|+|||+++++++..+..
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~ 208 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTDC 208 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHTC
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhCC
Confidence 34678999999999999999999988754
No 492
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.45 E-value=0.0016 Score=59.29 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=24.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
..+..++|+|+|||||||+++.++..+.
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3466899999999999999999988764
No 493
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.44 E-value=0.0013 Score=51.43 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=22.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhc
Q psy11490 29 LIVLGMAGSGKTSFVKKFSSYLYD 52 (147)
Q Consensus 29 I~I~G~SGSGKTTl~~~L~~~l~~ 52 (147)
+++.|++|+||||+++.+.+.+..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC
Confidence 899999999999999999988754
No 494
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.43 E-value=0.002 Score=58.95 Aligned_cols=27 Identities=19% Similarity=0.333 Sum_probs=23.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
....+++|+||+|||||||++.+....
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 456799999999999999999998754
No 495
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.42 E-value=0.00072 Score=50.34 Aligned_cols=26 Identities=19% Similarity=0.480 Sum_probs=21.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q psy11490 23 KSKPICLIVLGMAGSGKTSFVKKFSS 48 (147)
Q Consensus 23 ~~~~~~I~I~G~SGSGKTTl~~~L~~ 48 (147)
+.....|+|+|.+|+|||||+++|..
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhc
Confidence 34567899999999999999988763
No 496
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.42 E-value=0.0018 Score=58.90 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=22.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
..+++|+||+|||||||++.+....
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 6799999999999999999998765
No 497
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.42 E-value=0.0015 Score=48.90 Aligned_cols=29 Identities=31% Similarity=0.555 Sum_probs=22.8
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHH-HHHhh
Q psy11490 22 FKSKPICLIVLGMAGSGKTSFVKK-FSSYL 50 (147)
Q Consensus 22 ~~~~~~~I~I~G~SGSGKTTl~~~-L~~~l 50 (147)
.......|+|+|.+|+|||||+++ +....
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 344567899999999999999998 44443
No 498
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.41 E-value=0.0019 Score=56.12 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=23.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhhh
Q psy11490 26 PICLIVLGMAGSGKTSFVKKFSSYLY 51 (147)
Q Consensus 26 ~~~I~I~G~SGSGKTTl~~~L~~~l~ 51 (147)
+.-++|.||+|+||||+++.++..+.
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 44599999999999999999998874
No 499
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.41 E-value=0.0016 Score=47.30 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=21.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHH
Q psy11490 24 SKPICLIVLGMAGSGKTSFVKKFS 47 (147)
Q Consensus 24 ~~~~~I~I~G~SGSGKTTl~~~L~ 47 (147)
++...|+|+|.+|+|||||++++.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 467889999999999999999884
No 500
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.41 E-value=0.0026 Score=51.73 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhh
Q psy11490 25 KPICLIVLGMAGSGKTSFVKKFSSYL 50 (147)
Q Consensus 25 ~~~~I~I~G~SGSGKTTl~~~L~~~l 50 (147)
.+-+.+|+||+||||||++.++.-.+
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999886544
Done!