RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11490
(147 letters)
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 62.8 bits (152), Expect = 7e-13
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVD 76
+ ++ +G AGSGKT+ +F YL D +NLD +++PY ++D
Sbjct: 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNY-KVAYVNLDTGVKELPYEPSID 63
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 3e-06
Identities = 24/126 (19%), Positives = 40/126 (31%), Gaps = 31/126 (24%)
Query: 25 KPICLIVL-GMAGSGKTS----------FVKKFSSYLY------DKQDNPYVINLDPACR 67
+P +++ G+ GSGKT K ++ + L
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 68 --DVPYLVNVDPACRDVPYLVNVG--ELSMLLLNGNKLEHQIL---NFQKLATWMAFGFA 120
D + D + + ++ EL LL + E+ +L N Q W AF
Sbjct: 208 QIDPNWTSRSDHSSN-IKLRIHSIQAELRRLLKS-KPYENCLLVLLNVQNAKAWNAFNL- 264
Query: 121 FMRSSC 126
SC
Sbjct: 265 ----SC 266
Score = 30.2 bits (67), Expect = 0.22
Identities = 25/132 (18%), Positives = 40/132 (30%), Gaps = 33/132 (25%)
Query: 40 TSFVKKFSSYLYDKQDNPYVI------NLDPACRDVPYLVNVDPACRDV----PYLVN-- 87
V+KF + + + +++ P+ Y+ D D Y V+
Sbjct: 76 EEMVQKFVEEV-LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 88 --VGELSMLLL----NGNKLEHQILNFQKLATWMAFGFAFMRSSCVQANF------IKMG 135
+L LL N L +L K TW+A S VQ + +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGK--TWVA--LDVCLSYKVQCKMDFKIFWLNLK 190
Query: 136 ----PNPTLPPL 143
P L L
Sbjct: 191 NCNSPETVLEML 202
Score = 28.7 bits (63), Expect = 0.91
Identities = 17/126 (13%), Positives = 30/126 (23%), Gaps = 42/126 (33%)
Query: 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN-LDPACRDVPYLVNVDPACRD 81
K CL+VL N N + +C+ L+ R
Sbjct: 241 KPYENCLLVL-------------------LNVQNAKAWNAFNLSCK---ILLTT----RF 274
Query: 82 VPYLVNVGELSMLLLNGNKLEHQILNFQKLATWMAFGFAFMRSSCVQANFIKMGPNPTLP 141
+ + L+ H L+ + + ++ P LP
Sbjct: 275 KQ-VTDF-------LSAATTTHISLDHHSM------TLTPDEVKSLLLKYLDCRPQ-DLP 319
Query: 142 PLVQVI 147
V
Sbjct: 320 REVLTT 325
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 39.5 bits (92), Expect = 1e-04
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 28 CLIVL-GMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68
LI+L G+ G GK++F K + L + V+ D R+
Sbjct: 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD-LIRE 45
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 35.5 bits (81), Expect = 0.004
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 9 NSGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRD 68
+ P+ GP+ + P ++++G+ GKT KK + YL V N+ R+
Sbjct: 18 DHRPSLPRSCGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRE 77
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 34.7 bits (79), Expect = 0.006
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 29 LIVL-GMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63
+I+ G GSGK+++ ++ K Y IN D
Sbjct: 4 IILTIGCPGSGKSTWARE----FIAKNPGFYNINRD 35
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 34.4 bits (79), Expect = 0.007
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 29 LIVL-GMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63
+I+ G GSGK+++ ++ K Y IN D
Sbjct: 4 IILTIGCPGSGKSTWARE----FIAKNPGFYNINRD 35
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control
factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP:
a.4.5.11 c.37.1.20
Length = 389
Score = 34.8 bits (79), Expect = 0.007
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59
+LG G+GKT ++K DK +V
Sbjct: 42 HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFV 77
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 34.3 bits (78), Expect = 0.008
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYL 72
++P +++ G GSGKT+++ F Y D + V L
Sbjct: 17 GTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLL 66
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 33.3 bits (77), Expect = 0.013
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 9 NSGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKF 46
+SG + GPE K + ++G SGK++ V ++
Sbjct: 8 SSGRENLYFQGPELK-----VGIVGNLSSGKSALVHRY 40
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 33.8 bits (77), Expect = 0.015
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 30 IVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64
+L G+GK+ K Y + VI +DP
Sbjct: 39 TILAKPGAGKSFTAKMLLLREYMQ--GSRVIIIDP 71
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 33.4 bits (77), Expect = 0.015
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 11 GPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFS 47
GP S +K + ++G G GKT+++ +
Sbjct: 1 GPGSMERRELTYK-----ICLIGDGGVGKTTYINRVL 32
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 33.6 bits (77), Expect = 0.015
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 24 SKPICLIVLGMAGSGKTSFVKKF 46
+P + + GMAG GK+ +
Sbjct: 145 GEPGWVTIYGMAGCGKSVLAAEA 167
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 33.5 bits (76), Expect = 0.017
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60
KP + + G+ G+GKT+ VK S L+ K +
Sbjct: 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKH 79
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 33.0 bits (75), Expect = 0.021
Identities = 14/76 (18%), Positives = 26/76 (34%)
Query: 8 DNSGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACR 67
+ SSG F+ ++++G+ SGK+S K + +
Sbjct: 2 HHHHHHSSGRENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKD 61
Query: 68 DVPYLVNVDPACRDVP 83
D+ V+ D P
Sbjct: 62 DISNSSFVNFQIWDFP 77
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 32.6 bits (75), Expect = 0.027
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63
KP + + G SGKT+ + + L + ++ +D
Sbjct: 3 APKPFVIGIAGGTASGKTTLAQALARTL---GERVALLPMD 40
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal
recognition particle, SRP-GTPase, protein targeting,
cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus
furiosus}
Length = 443
Score = 32.5 bits (75), Expect = 0.034
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 21 EFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD---PA 65
E K KP L+++G+ GSGKT+ V K + Y + V+ D P
Sbjct: 95 EIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPG 142
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase,
HEL helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 32.6 bits (73), Expect = 0.035
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63
+PI +++ G +G+GKT+ + Q N +I+ D
Sbjct: 30 KQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGD 66
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 31.9 bits (73), Expect = 0.042
Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 10/86 (11%)
Query: 33 GMAGSGKTSFVKKFSSYLYDKQDNPYVINLD--------PACRDVPYLVNVDPACRDVPY 84
G++ SGKT+ + S L ++ + V ++D DV +
Sbjct: 29 GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEW 88
Query: 85 LVNVGELSMLLLNGNKLEHQILNFQK 110
L + +L L ++L + +
Sbjct: 89 LTH--QLFRQLKASHQLTLPFYDHET 112
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 32.0 bits (72), Expect = 0.046
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 24 SKPICLIVLGMAGSGKTSFVKKFSSYL 50
+ LG+ G+GKT K + +
Sbjct: 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus
norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A*
2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 32.3 bits (73), Expect = 0.051
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 8 DNSGPA-SSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYL 50
N PA + G + P ++++G+ GKT KK + YL
Sbjct: 20 SNGRPALHASQRGVCMTNCPTLIVMVGLPARGKTYISKKLTRYL 63
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase,
ultrahigh resolution, protein transport; 1.10A {Thermus
aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B*
1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B*
2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A
1ffh_A 2ng1_A*
Length = 295
Score = 31.7 bits (73), Expect = 0.053
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 16 GDHGPEFKSKPICLIVL-GMAGSGKTSFVKKFSSYLYDKQDNPYVINLD---PA 65
G K L L G+ GSGKT+ K + Y K P ++ D PA
Sbjct: 87 GGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA 140
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA
binding protein, hydrolase, gtpas; HET: GCP; 3.94A
{Escherichia coli} PDB: 2j28_9
Length = 433
Score = 31.7 bits (73), Expect = 0.061
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 21 EFKSKPICLIVL-GMAGSGKTSFVKKFSSYLYDKQD-NPYVINLD---PA 65
++P ++++ G+ G+GKT+ V K +L +K V++ D PA
Sbjct: 94 NLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPA 143
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 31.7 bits (71), Expect = 0.067
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 23 KSKPICLIVLGMAGSGKTSFVKKFSSY-LYDKQDNPYVINLDP 64
P +IV G + +GKTS + SY L P INLDP
Sbjct: 136 FEGPRVVIV-GGSQTGKTSLSRTLCSYALKFNAYQPLYINLDP 177
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A
{Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB:
1j8y_F
Length = 297
Score = 31.3 bits (72), Expect = 0.070
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 21 EFKSKPICLIVL-GMAGSGKTSFVKKFSSYLYDKQDNPYVINLD---PA 65
K +I+L G+ G+GKT+ K + + K ++ D PA
Sbjct: 92 VIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPA 140
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 31.2 bits (70), Expect = 0.071
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 30 IVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINL 62
+V G+ G G T+ + L + N +++
Sbjct: 7 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF 39
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 31.4 bits (70), Expect = 0.082
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 19 GPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQ 54
++ + + G +GK++FV D +
Sbjct: 17 ASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWE 52
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M
domain, RNA-binding, signal sequence-binding,
helix-turn-helix, protein targeting; 3.20A {Thermus
aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB:
2iy3_A
Length = 425
Score = 31.3 bits (72), Expect = 0.093
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 16 GDHGPEFKSKPICLIVL-GMAGSGKTSFVKKFSSYLYDKQDNPYVINLD---PACRD 68
G K L L G+ GSGKT+ K + Y K P ++ D PA R+
Sbjct: 87 GGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase,
shikimat ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 30.5 bits (69), Expect = 0.13
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 20 PEFKSKPICLIVLGMAGSGKTSFVKKFSSYL 50
P + + L+ GM GSGKT+ K + L
Sbjct: 44 PYLNGRSMYLV--GMMGSGKTTVGKIMARSL 72
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 30.3 bits (69), Expect = 0.15
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 10/35 (28%)
Query: 20 PEFKSKPICLIVLGMAGSGKTS----FV-KKFSSY 49
PE + L VLG A SGK+S F+ +
Sbjct: 6 PELR-----LGVLGDARSGKSSLIHRFLTGSYQVL 35
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 30.4 bits (69), Expect = 0.15
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 13 ASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFS 47
A+ G+ +FK L+++G G+GKT+FVK+
Sbjct: 7 AAQGEPQVQFK-----LVLVGDGGTGKTTFVKRHL 36
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 30.3 bits (68), Expect = 0.17
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 24 SKPICLIVLGMAGSGKTSFVKKFSSYL 50
P +IV G +GKT+ + ++ L
Sbjct: 3 QTPALIIVTGHPATGKTTLSQALATGL 29
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 30.2 bits (69), Expect = 0.17
Identities = 6/25 (24%), Positives = 17/25 (68%)
Query: 22 FKSKPICLIVLGMAGSGKTSFVKKF 46
++ + +++LG+ G+GKT+ + +
Sbjct: 3 HMTREMRILILGLDGAGKTTILYRL 27
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 30.2 bits (68), Expect = 0.18
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 17 DHGPEFKSKPICLIVLGMAG---SGKTSFVKKFSSYL-----YDKQDNPYVINLD 63
+H +P ++G++G SGK+S K L +Q +++ D
Sbjct: 13 NHQQPNGGEPF---LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQD 64
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 30.1 bits (68), Expect = 0.18
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 13 ASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYL-----YDKQDNPYVINLD 63
++ +P + V G SGK++ +K L +Q +++ D
Sbjct: 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQD 67
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 30.0 bits (67), Expect = 0.20
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 23 KSKPICLIVLGMAGSGKTS 41
+ P ++V+G++GSGK+S
Sbjct: 15 RRFPGSIVVMGVSGSGKSS 33
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding,
signal recognition particle, GTP-binding, RNA-binding;
2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Length = 432
Score = 30.2 bits (69), Expect = 0.22
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 21 EFKSKPICLIVL-GMAGSGKTSFVKKFSSYLYDKQDNPYVINLD---PA 65
E K +I+L G+ GSGKT+ K + Y+ + P +I D PA
Sbjct: 93 ELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPA 141
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 29.7 bits (66), Expect = 0.23
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 30 IVLGMAGSGKTSFVKKFSSYLYDKQDNPYVIN 61
IV G+ G GK++ + K L ++ N +IN
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition
particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A
{Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Length = 433
Score = 30.2 bits (69), Expect = 0.24
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 21 EFKSKPICLIVL-GMAGSGKTSFVKKFSSYLYDKQDNPYVINLD---PA 65
+K +I+L G+ GSGKT+ K + + + ++ D PA
Sbjct: 91 VNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPA 139
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding,
transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 187
Score = 29.5 bits (67), Expect = 0.25
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 22 FKSKPICLIVLGMAGSGKTSFVKKF 46
F + +I++G+ +GKT+ + +F
Sbjct: 12 FNHQEHKVIIVGLDNAGKTTILYQF 36
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 29.6 bits (66), Expect = 0.27
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 11 GPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYL 50
GP S PEF P +++ G G GKT+ K+ +S
Sbjct: 1 GPLGS----PEFMLLPN-ILLTGTPGVGKTTLGKELASKS 35
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 29.7 bits (66), Expect = 0.28
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 24 SKPICLIVLGMAGSGKTS 41
++V+G++GSGKT+
Sbjct: 27 EPTRHVVVMGVSGSGKTT 44
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 29.8 bits (66), Expect = 0.28
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 15 SGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60
S D + K + + + G G GKT+ ++F + + +I
Sbjct: 2 STDK-TDVKMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLI 46
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 29.6 bits (67), Expect = 0.28
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 22 FKSKPICLIVLGMAGSGKTSFVKKF 46
F K + ++++G+ +GKT+ + K
Sbjct: 25 FGKKQMRILMVGLDAAGKTTILYKL 49
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 29.6 bits (66), Expect = 0.31
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 33 GMAGSGKTSFVKKFSSYLYDK------QDNPY 58
G G+GK++ + S L + ++NPY
Sbjct: 7 GTVGAGKSTISAEISKKLGYEIFKEPVEENPY 38
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex
without magnesium, ARF family, RAS superfamily,
G-domain, signaling protein; HET: MES GDP; 1.70A {Mus
musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 29.1 bits (66), Expect = 0.33
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 22 FKSKPICLIVLGMAGSGKTSFVKKF 46
+ + +++LG+ +GKT+ +K+
Sbjct: 12 APDQEVRILLLGLDNAGKTTLLKQL 36
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 29.1 bits (65), Expect = 0.34
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 29 LIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63
I+ G AG GK++ L + DN I D
Sbjct: 5 YIITGPAGVGKST----TCKRLAAQLDNSAYIEGD 35
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 29.6 bits (66), Expect = 0.36
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63
PI + G +G+G ++ F + I D
Sbjct: 6 PIISVT-GSSGAGTSTVKHTFDQIFRREGVKAVSIEGD 42
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 29.3 bits (65), Expect = 0.37
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 26 PICLIVLGMAGSGKTSFVKKFSSYLYD 52
P L + G GK++FVK + +
Sbjct: 2 PRRLSIEGNIAVGKSTFVKLLTKTYPE 28
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 29.0 bits (65), Expect = 0.39
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYD----KQDNPYV 59
SK + + G+ SGKT+ K +L + QD+ +
Sbjct: 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFK 58
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 29.1 bits (66), Expect = 0.39
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 22 FKSKPICLIVLGMAGSGKTSFVKKF 46
K + + L++LG+ +GKT+ +KKF
Sbjct: 14 QKERELRLLMLGLDNAGKTTILKKF 38
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase,
nuclease, double strand DNA repair, protein-DNA CO
hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus
subtilis} PDB: 3u44_B*
Length = 1166
Score = 29.7 bits (66), Expect = 0.40
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 30 IVLGMAGSGKTSFV-KKFSSYLYDKQDNPYVINLDP 64
++G +GSGKT + L +I L P
Sbjct: 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVP 40
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 29.5 bits (65), Expect = 0.41
Identities = 5/33 (15%), Positives = 7/33 (21%)
Query: 24 SKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDN 56
S+ + S K V L
Sbjct: 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSAR 75
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 29.1 bits (66), Expect = 0.41
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 7 SDNSGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFS 47
+SG G E K + +LG G GK+S V +F
Sbjct: 9 HHSSGLVPRGSAIRELK-----VCLLGDTGVGKSSIVCRFV 44
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A*
3mrs_A 3n2e_A*
Length = 168
Score = 29.1 bits (66), Expect = 0.43
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 18 HGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYL 50
H + + LI G GSGK+S ++ L
Sbjct: 1 HHHHHHMQHLVLI--GFMGSGKSSLAQELGLAL 31
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold,
GTPase, GTP binding, protein binding, signali protein;
HET: GNP; 2.30A {Homo sapiens}
Length = 204
Score = 29.0 bits (65), Expect = 0.49
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 7 SDNSGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59
S P S F+ + I +V+G GKT + +++ + + P V
Sbjct: 11 SSGLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 63
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 28.8 bits (65), Expect = 0.56
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 22 FKSKPICLIVLGMAGSGKTSFVKKF 46
SK + ++ LG+ SGKT+ + K
Sbjct: 17 RGSKEVHVLCLGLDNSGKTTIINKL 41
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 28.8 bits (63), Expect = 0.64
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63
P ++ G GSGKTS Q N VI+ D
Sbjct: 30 VESPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDND 67
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 28.3 bits (64), Expect = 0.66
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 22 FKSKPICLIVLGMAGSGKTSFVKKF 46
+ + L ++G+ SGKT+FV
Sbjct: 18 GSKEEMELTLVGLQYSGKTTFVNVI 42
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 28.4 bits (64), Expect = 0.66
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 22 FKSKPICLIVLGMAGSGKTSFVKKF 46
+ I +++LG+ +GKTS + +
Sbjct: 18 PADRKIRVLMLGLDNAGKTSILYRL 42
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 28.6 bits (63), Expect = 0.67
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 23 KSKPICLIVLGMAGSGKTSFVKK-FSSYLYDKQDNP 57
K L+V+G +G GK++ + F + LY ++
Sbjct: 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIS 50
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 28.5 bits (63), Expect = 0.71
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 23 KSKPICLIVLGMAGSGKTS 41
+++G++GSGK++
Sbjct: 5 NHDHHIYVLMGVSGSGKSA 23
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 28.5 bits (63), Expect = 0.71
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 16 GDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNV 75
G E +++ G G+GKTS + + + D + + ++ +
Sbjct: 1 GPGSMEQPKGIN-ILITGTPGTGKTSMAEMIA----AELDGFQHLEVGKLVKENHFYTEY 55
Query: 76 DP 77
D
Sbjct: 56 DT 57
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 28.1 bits (63), Expect = 0.74
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 29 LIVLGMAGSGKTSFVKKFSSYL 50
+I+ G K++ K S L
Sbjct: 4 IILEGPDCCFKSTVAAKLSKEL 25
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP,
translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Length = 504
Score = 28.8 bits (65), Expect = 0.76
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 21 EFKSKPICLIVL-GMAGSGKTSFVKKFSSYLYDKQDNPYVINLD 63
+I+ G+ GSGKT+ K + Y K +I D
Sbjct: 95 TPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 28.4 bits (63), Expect = 0.83
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 2 AEEKVSDNSGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFV 43
E + GP + + ++++G G+GK++
Sbjct: 10 GRENLYFQGGPGRQEPRNSQLR-----IVLVGKTGAGKSATG 46
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 28.1 bits (62), Expect = 0.89
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVD 76
I IV G + SGKT+ + + L ++ V+ D
Sbjct: 3 LILSIV-GTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKD 52
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 28.1 bits (62), Expect = 0.94
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 8 DNSGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVK 44
+ G + +I++G G+GK++
Sbjct: 4 NEHSHWGPHAKGQCASRSELRIILVGKTGTGKSAAGN 40
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 27.9 bits (63), Expect = 1.00
Identities = 6/19 (31%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 23 KSKPICLIVLGMAGSGKTS 41
+ + I L+ G G+GK++
Sbjct: 3 EKRNIFLV--GPMGAGKST 19
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 28.1 bits (62), Expect = 1.0
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 21 EFKSKPICLIVLGMAGSGKTSFVKKF 46
E ++LG+ GK+S ++ F
Sbjct: 26 ESLENYPLTLLLGIRRVGKSSLLRAF 51
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 27.7 bits (62), Expect = 1.0
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 21 EFKSKPICLIVLGMAGSGKTSFVKKFS 47
K L+++G GSGKT+ +++
Sbjct: 2 RMK-----LMIVGNTGSGKTTLLQQLM 23
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 27.8 bits (62), Expect = 1.1
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 23 KSKPICLIVLGMAGSGKTSFVKKF 46
KS ++ +G+ SGKT +
Sbjct: 4 KSSQRAVLFVGLCDSGKTLLFVRL 27
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 28.0 bits (63), Expect = 1.1
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 22 FKSKPICLIVLGMAGSGKTSFVKKF 46
K L+ LG+ +GKT+ +
Sbjct: 21 LYKKTGKLVFLGLDNAGKTTLLHML 45
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 28.2 bits (62), Expect = 1.1
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 23 KSKPICLIVLGMAGSGKTSFVKK-FSSYLYDKQDNP 57
+ L+V+G +G GK++ + F + LY +
Sbjct: 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPG 63
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling
protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens}
PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B
1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A*
1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B*
...
Length = 201
Score = 27.8 bits (62), Expect = 1.2
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 9 NSGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59
+SG G H + K L+++G GKT + FS + + P V
Sbjct: 11 SSGLVPRGSHMAAIRKK---LVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 58
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 28.1 bits (62), Expect = 1.3
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 22 FKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVI 60
K K + + G AG+G T+ K L + ++
Sbjct: 41 IKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIIL 79
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 27.7 bits (61), Expect = 1.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 29 LIVLGMAGSGKTSFVKKFSSYLYDK 53
+I+ G G GKT+ VKK L +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKR 27
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 27.8 bits (62), Expect = 1.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 23 KSKPICLIVLGMAGSGKTSFVKKFSS 48
KS +I+ G SGKTS + ++
Sbjct: 9 KSYQPSIIIAGPQNSGKTSLLTLLTT 34
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 28.0 bits (62), Expect = 1.4
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 24 SKPICLIVLGMAGSGKTSFVKK 45
L + G AGSGK+ +
Sbjct: 150 LDSFFLFLHGRAGSGKSVIASQ 171
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 27.5 bits (62), Expect = 1.5
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 22 FKSKPICLIVLGMAGSGKTSFVKKF 46
+K L+ LG+ +GKT+ +
Sbjct: 19 LWNKHGKLLFLGLDNAGKTTLLHML 43
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 1.5
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 22/63 (34%)
Query: 57 PYVINLDPACRDVPYLVNVDPACRDVPYLVNVGELSMLLLNGNKLEHQILNFQKLATWMA 116
P N D NVD Y++ + L + + + +
Sbjct: 1407 PGNRNAD----------NVDKILEQFEYVLYPSK----TLKTDGVRAVSIT--------S 1444
Query: 117 FGF 119
FGF
Sbjct: 1445 FGF 1447
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 27.2 bits (61), Expect = 1.6
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 22 FKSKPICLIVLGMAGSGKTSFVKKF 46
S+ +I++G+ +GKT+ + +F
Sbjct: 17 RGSQEHKVIIVGLDNAGKTTILYQF 41
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 27.4 bits (61), Expect = 1.6
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 23 KSKPICLIVLGMAGSGKTSFVKKFSS 48
S +I+ G SGKTS + ++
Sbjct: 45 GSYQPSIIIAGPQNSGKTSLLTLLTT 70
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 27.7 bits (61), Expect = 1.7
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 29 LIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDPACRDVP 83
L+++G +GSGK+S S +D + +L N+ D
Sbjct: 6 LLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCG 60
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 27.4 bits (61), Expect = 1.7
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 23 KSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59
+ ++ G SGKT+ +K S + + + V
Sbjct: 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMV 47
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus
solfataricus} SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 27.3 bits (60), Expect = 1.7
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 29 LIVLGMAGSGKTSFVKKF 46
+VLG+ +GK+S +K
Sbjct: 33 TLVLGLRRTGKSSIIKIG 50
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 27.3 bits (60), Expect = 1.7
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNVDP-----ACR 80
+ +V G SGKT+ ++K+ + + + + VD A
Sbjct: 5 NVWQVV-GYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGA 63
Query: 81 DVPYLVN 87
+
Sbjct: 64 VATAVEG 70
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 27.1 bits (59), Expect = 1.7
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 26 PICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64
P+ +G+GKT+ +KK L + P +I
Sbjct: 7 PLLAFA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase,
transferase; HET: T5A; 1.98A {Escherichia coli} SCOP:
c.37.1.1 PDB: 5tmp_A*
Length = 213
Score = 27.2 bits (61), Expect = 1.8
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 29 LIVL-GMAGSGKTSFVKKFSSYLYDKQDNPYVI 60
IV+ G+ G+GKT+ L V
Sbjct: 5 YIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF 37
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 27.5 bits (60), Expect = 1.9
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 20 PEFKSKPICLIVLGMAGSGKTSFVKK 45
P S + L+ G+ G GKT +
Sbjct: 156 PHVSSAKVVLV-DGVPGCGKTKEILS 180
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 27.1 bits (61), Expect = 2.0
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 11 GPASSGDHGP---EFKSKPICLIVLGMAGSGKTSFVKKFS 47
G SSGD G +FK L+ LG GKTS + +F
Sbjct: 1 GTMSSGDFGNPLRKFK-----LVFLGEQSVGKTSLITRFM 35
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 27.0 bits (59), Expect = 2.1
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 25 KPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59
L++ G GSGK++ + L + P V
Sbjct: 8 GGNILLLSGHPGSGKSTIAEA----LANLPGVPKV 38
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 27.4 bits (60), Expect = 2.1
Identities = 5/36 (13%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 23 KSKPICLIVLGMAGSGKTSFVKK-FSSYLYDKQDNP 57
+ ++ +G G GK++ + F++ +
Sbjct: 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATH 74
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 27.0 bits (59), Expect = 2.4
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 25 KPICLIVLGMAGSGKTSFVKKF 46
ICLI G GSGKT +
Sbjct: 5 AEICLIT-GTPGSGKTLKMVSM 25
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 27.0 bits (59), Expect = 2.4
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 28 CLIVLGMAGSGKTSFVKK-FSSYLYDKQDNPYVINLDPACRDVPYLVNVD 76
L+V+G +G GK++ + F + LY + + + V +
Sbjct: 10 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK 59
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE;
1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 26.8 bits (60), Expect = 2.4
Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 2/17 (11%)
Query: 25 KPICLIVLGMAGSGKTS 41
K I I G GSGK++
Sbjct: 5 KNIVFI--GFMGSGKST 19
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle
structural genomics center for infectious transferase;
1.90A {Burkholderia thailandensis}
Length = 227
Score = 26.8 bits (60), Expect = 2.5
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 8 DNSGPASSGDHGPEFKSKPICLIVL-GMAGSGKTSFVKKFSSYLYDK 53
+ G + GP ++ I G+ G+GKT+ ++ F L ++
Sbjct: 7 HHMGTLEAQTQGPGSMARGK-FITFEGIDGAGKTTHLQWFCDRLQER 52
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 27.0 bits (60), Expect = 2.5
Identities = 8/47 (17%), Positives = 23/47 (48%)
Query: 29 LIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDPACRDVPYLVNV 75
++++G G+GK+ + + L + ++ +P ++P + V
Sbjct: 63 VLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTV 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 26.6 bits (58), Expect = 2.8
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 28 CLIVLGMAGSGKTSFVKKFSSYLYDK 53
+ + G G GKT+ + K S L
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSS 28
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 26.4 bits (59), Expect = 3.1
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 9 NSGPASSGDHGP-EFKSKPICLIVLGMAGSGKTSFVKKF 46
+SG + GP E L +LG G+GK++ KF
Sbjct: 8 SSGRENLYFQGPLEVN-----LAILGRRGAGKSALTVKF 41
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 26.4 bits (59), Expect = 3.1
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 25 KPICLIVLGMAGSGKTSFVKKFSSYL 50
I L G G+GKT+ K F+ L
Sbjct: 26 VRIFLT--GYMGAGKTTLGKAFARKL 49
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A
{Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A*
1p73_A* 1p75_A*
Length = 334
Score = 26.6 bits (58), Expect = 3.1
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 25 KPICLIVL-GMAGSGKTSFVKKFSSYLYDKQDNPYV 59
I I L G+ G GK++ + +S Y
Sbjct: 5 VTIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 40
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 26.4 bits (59), Expect = 3.2
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 1 MAEEKVSDNSG-PASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59
MA A + G KS + L++ +G GKT+ K L +KQ N V
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMLKSVGVILVLSSPSGCGKTTVANK----LLEKQKNNIV 56
Query: 60 I 60
Sbjct: 57 K 57
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding,
protein binding; HET: GDP; 3.17A {Saccharomyces
cerevisiae} SCOP: c.37.1.8
Length = 183
Score = 26.5 bits (59), Expect = 3.5
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 22 FKSKPICLIVLGMAGSGKTSFVKKF 46
+K + +++LG+ G+GKT+ + +
Sbjct: 14 GSNKELRILILGLDGAGKTTILYRL 38
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural
protein structure initiative, midwest center for
structural genomics; HET: MSE; 2.00A {Pseudomonas
aeruginosa PAO1}
Length = 500
Score = 26.5 bits (59), Expect = 3.6
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 25 KPICLIVLGMAGSGKTSFVKKFSSYL 50
P+ +++ G+ G+GK VK + ++
Sbjct: 42 FPVIILINGIEGAGKGETVKLLNEWM 67
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 26.4 bits (58), Expect = 3.7
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 33 GMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64
G+ G GK++ ++ +L ++ V+ +DP
Sbjct: 86 GVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 26.0 bits (58), Expect = 4.0
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 13 ASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFS 47
A++G+ K L++LG G+GK+S V +F
Sbjct: 4 AAAGNKSINAK-----LVLLGDVGAGKSSLVLRFV 33
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 26.0 bits (58), Expect = 4.0
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 6 VSDNSGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKF 46
+S G + + K +I++G G GK++ +F
Sbjct: 5 ISGGGGGSQNSLA--LHK-----VIMVGSGGVGKSALTLQF 38
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ehrlich chaffeensis; 2.15A
{Ehrlichia chaffeensis}
Length = 223
Score = 26.1 bits (58), Expect = 4.1
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 12 PASSGDHGPEFKSKPICLIVL-GMAGSGKTSFVKKFSSYLYDKQDNPYVI 60
G + + I G+ GSGKT+ + YL + V+
Sbjct: 6 HHHMGTLEAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug
gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A
{Herpes simplex virus} SCOP: c.37.1.1
Length = 376
Score = 26.4 bits (57), Expect = 4.1
Identities = 5/41 (12%), Positives = 14/41 (34%)
Query: 12 PASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYD 52
++ + + + + G G GKT+ + +
Sbjct: 35 QEATEVRPEQKMPTLLRVYIDGPHGMGKTTTTQLLVALGSR 75
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in
diseases, center for structural genomics of infectious
DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio
cholerae o1 biovar eltor} PDB: 3n2i_A*
Length = 236
Score = 26.1 bits (58), Expect = 4.2
Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 29 LIVL-GMAGSGKTSFVKKFSSYLYDKQDNPYVI 60
IV+ G+ G+GK++ ++ L + ++
Sbjct: 29 FIVIEGLEGAGKSTAIQVVVETL-QQNGIDHIT 60
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.2 bits (57), Expect = 4.3
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 10/41 (24%)
Query: 51 YDKQDNPYVINLD-----PACRDVPYLVNVDPA-----CRD 81
DK+ NL+ P C+ P + + C
Sbjct: 7 IDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCAL 47
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 26.4 bits (58), Expect = 4.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 33 GMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64
G G+GK++F++ F L ++ V+ +DP
Sbjct: 81 GPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 26.2 bits (57), Expect = 4.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 21 EFKSKPICLIVLGMAGSGKTSFV 43
E S + + V G GSGK+SF+
Sbjct: 64 EIDSSVLNVAVTGETGSGKSSFI 86
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 26.0 bits (58), Expect = 4.7
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 23 KSKPICLIVLGMAGSGKTS 41
I LI G+ G+GKTS
Sbjct: 4 NLTNIYLI--GLMGAGKTS 20
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 26.2 bits (57), Expect = 4.7
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 12 PASSGDHGPEFKSKP-ICLIVLGMAGSGKTSFV 43
SSG F+ + LI++G G+GK++
Sbjct: 6 HHSSGRENLYFQGESTRRLILVGRTGAGKSATG 38
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling
protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A*
3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 26.0 bits (58), Expect = 4.7
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 10 SGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKF 46
+ A ++ P +K L+V+G G GK++ +F
Sbjct: 7 ATSAVPSENLPTYK-----LVVVGDGGVGKSALTIQF 38
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding,
ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE
PG4; 1.60A {Sulfolobus tokodaii}
Length = 213
Score = 26.1 bits (58), Expect = 4.9
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 29 LIVL-GMAGSGKTSFVKKFSSYL 50
LI G+ GSGK+S ++
Sbjct: 6 LIAFEGIDGSGKSSQATLLKDWI 28
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
MTBI, transferase; HET: ATM; 1.85A {Staphylococcus
aureus subsp} PDB: 4dwj_A* 4f4i_A
Length = 229
Score = 26.1 bits (58), Expect = 5.0
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 9 NSGPASSGDHGPEFKSKPICLIVL-GMAGSGKTSFVKKFSSYLYDKQDNPYVI 60
+SG ++ + I G GSGKT+ + + L +D ++
Sbjct: 8 SSGVDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL--VKDYDVIM 58
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 26.3 bits (57), Expect = 5.1
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 20 PEFKSKPICLIVLGMAGSGKTSFVK 44
+F KP+ ++V G +GKTSF++
Sbjct: 60 ADFDGKPM-VLVAGQYSTGKTSFIQ 83
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 26.0 bits (57), Expect = 5.9
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 29 LIVLGMAGSGKTSFVKKFSSYLYDKQDNPYVINLDP 64
L+V G G+GK+ +++ + + D VI +DP
Sbjct: 56 LLVNGATGTGKSVLLRELAYTGLLRGD-RMVI-VDP 89
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2iez_A*
Length = 217
Score = 25.8 bits (57), Expect = 5.9
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 7 SDNSGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFS 47
S P SGD+ K L+ LG +G GKT+F+ +++
Sbjct: 11 SSGLVPRGSGDYDYLIK-----LLALGDSGVGKTTFLYRYT 46
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex
(helicase/DNA), DNA unwinding, hydrolase/DNA complex;
HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19
c.37.1.19
Length = 673
Score = 26.0 bits (58), Expect = 5.9
Identities = 9/14 (64%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
Query: 28 CLIVLGMAGSGKTS 41
CL++ G AGSGKT
Sbjct: 18 CLVLAG-AGSGKTR 30
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP,
structural genomics, SGC, structural genomics
consortium, signaling protein; HET: GDP; 2.15A {Homo
sapiens}
Length = 199
Score = 25.7 bits (57), Expect = 6.3
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 10 SGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFS 47
G A S +K +++ G A GK+SF+ +
Sbjct: 17 RGSAKSFSSQKAYK-----IVLAGDAAVGKSSFLMRLC 49
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 25.7 bits (55), Expect = 6.3
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 23 KSKPICLIVLGMAGSGKTSFVKKFSSYL---YDKQDNPYVINLDPACRDVPYLVNVDPAC 79
P+ + G GSGK+ + ++L Y + + ++D + ++
Sbjct: 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQF 87
Query: 80 RDVPYLVN 87
++ L
Sbjct: 88 KNNKLLQG 95
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 25.6 bits (57), Expect = 6.5
Identities = 6/18 (33%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Query: 24 SKPICLIVLGMAGSGKTS 41
+ L+ G+ GSGK++
Sbjct: 2 APKAVLV--GLPGSGKST 17
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain,
RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp
protein; HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 25.4 bits (56), Expect = 6.7
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 10 SGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFS 47
S G+ +FK L+ LG GKTS + +F
Sbjct: 5 STGGDFGNPLRKFK-----LVFLGEQSVGKTSLITRFM 37
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 25.8 bits (56), Expect = 6.7
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 29 LIVLGMAGSGKTSFVK 44
++++G+ GK+S K
Sbjct: 2 VLLMGVRRCGKSSICK 17
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation,
ADP, nucleotide binding, CARD, apoptosis; HET: ADP;
2.21A {Homo sapiens}
Length = 591
Score = 25.9 bits (57), Expect = 6.8
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 1/16 (6%)
Query: 30 IVLGMAGSGKTSFVKK 45
I GMAG GK+ +
Sbjct: 152 IH-GMAGCGKSVLAAE 166
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A
{Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Length = 205
Score = 25.6 bits (57), Expect = 6.8
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 29 LIVL-GMAGSGKTSFVKKFSSYLYDKQDNPYVI 60
I G GSGKT+ + + L +D ++
Sbjct: 4 FITFEGPEGSGKTTVINEVYHRL--VKDYDVIM 34
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia
chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 25.2 bits (56), Expect = 7.1
Identities = 6/18 (33%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Query: 24 SKPICLIVLGMAGSGKTS 41
++PI ++ G G G T+
Sbjct: 2 TEPIFMV--GARGCGMTT 17
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics, NPPSFA; HET: ADP TYD; 2.10A
{Thermotoga maritima} PDB: 3hjn_A*
Length = 197
Score = 25.2 bits (56), Expect = 7.8
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 29 LIVL-GMAGSGKTSFVKKFSSYLYDK 53
I G+ GSGK++ ++ + YL +
Sbjct: 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 25.2 bits (56), Expect = 7.8
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 27 ICLIVLGMAGSGKTSFVKKFSSYL 50
I LI G SGK++ S L
Sbjct: 3 IYLI--GFMCSGKSTVGSLLSRSL 24
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 25.2 bits (56), Expect = 8.6
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 10 SGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKK 45
GP + + + +++ G + GK++ V+
Sbjct: 4 EGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRC 39
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 25.2 bits (55), Expect = 8.8
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 7 SDNSGPASSGDHGPEFKSKPICLIVLGMAGSGKTSFVKKFSSYLYDKQDNPYV 59
S P+ L+++G GKT+ ++ + Y + P V
Sbjct: 8 SSGRENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV 60
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET:
GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Length = 447
Score = 25.4 bits (54), Expect = 9.8
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 20 PEFKSKPICLI-VLGMAGSGKTSFVKKFSSYLYDKQDNP 57
+ K + + V G GK+ + Y+Y+++
Sbjct: 60 EAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVD 98
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 25.4 bits (56), Expect = 9.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 36 GSGKTSFVKKFSSYLYDKQDNPYVI 60
G GKTSF S +L K YVI
Sbjct: 81 GVGKTSFGLAMSLFLALKGKRCYVI 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.421
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,178,943
Number of extensions: 113198
Number of successful extensions: 489
Number of sequences better than 10.0: 1
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 150
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)