BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11491
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C47|A Chain A, Structure Of Casein Kinase 1 Gamma 2
pdb|2C47|B Chain B, Structure Of Casein Kinase 1 Gamma 2
pdb|2C47|C Chain C, Structure Of Casein Kinase 1 Gamma 2
pdb|2C47|D Chain D, Structure Of Casein Kinase 1 Gamma 2
Length = 313
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 91/129 (70%), Positives = 107/129 (82%), Gaps = 2/129 (1%)
Query: 150 IEGTVTAKQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLC 209
I + +QSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLC
Sbjct: 181 INTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLC 240
Query: 210 EGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDWTGRAMVVSSTN 269
E PEE++TYLRYVRRLDFFE PDYD+LR++F +LF+R G+V D E+DW G+ + +
Sbjct: 241 ENFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRSGFVFDYEYDWAGKPL--PTPI 298
Query: 270 GELGTDDPT 278
G + TD P+
Sbjct: 299 GTVHTDLPS 307
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 40/59 (67%), Gaps = 9/59 (15%)
Query: 66 GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLV 124
G P+VY+FG G Y A+VL LLGPSL+DLF+LC F+LKTVLMIA QL+
Sbjct: 61 GVPQVYYFG---------PXGKYNAMVLELLGPSLEDLFDLCDRTFTLKTVLMIAIQLI 110
>pdb|2CHL|A Chain A, Structure Of Casein Kinase 1 Gamma 3
Length = 351
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/114 (75%), Positives = 100/114 (87%), Gaps = 1/114 (0%)
Query: 150 IEGTVTAKQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLC 209
I + +QSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLC
Sbjct: 207 INTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLC 266
Query: 210 EGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDWTGRAM 263
E P E++TYLRYVRRLDFFE PDYD+LR++F +LF+R+GY+ D E+DW G+ +
Sbjct: 267 ENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDWIGKQL 319
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 40/59 (67%), Gaps = 9/59 (15%)
Query: 66 GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLV 124
G P+VY+FG G Y A+VL LLGPSL+DLF+LC FSLKTVLMIA QL+
Sbjct: 87 GIPQVYYFGPC---------GKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLI 136
>pdb|2IZR|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
Inhibitor
pdb|2IZS|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
Inhibitor
pdb|2IZT|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
Inhibitor
pdb|2IZU|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
Inhibitor
Length = 330
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/114 (75%), Positives = 100/114 (87%), Gaps = 1/114 (0%)
Query: 150 IEGTVTAKQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLC 209
I + +QSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLC
Sbjct: 186 INTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLC 245
Query: 210 EGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDWTGRAM 263
E P E++TYLRYVRRLDFFE PDYD+LR++F +LF+R+GY+ D E+DW G+ +
Sbjct: 246 ENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDWIGKQL 298
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 40/59 (67%), Gaps = 9/59 (15%)
Query: 66 GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLV 124
G P+VY+FG G Y A+VL LLGPSL+DLF+LC FSLKTVLMIA QL+
Sbjct: 66 GIPQVYYFGPC---------GKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLI 115
>pdb|4HGL|A Chain A, Crystal Structure Of Ck1g3 With Compound 1
pdb|4HGS|A Chain A, Crystal Structure Of Ck1gs With Compound 13
Length = 330
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/114 (75%), Positives = 100/114 (87%), Gaps = 1/114 (0%)
Query: 150 IEGTVTAKQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLC 209
I + +QSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLC
Sbjct: 186 INTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLC 245
Query: 210 EGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDWTGRAM 263
E P E++TYLRYVRRLDFFE PDYD+LR++F +LF+R+GY+ D E+DW G+ +
Sbjct: 246 ENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDWIGKQL 298
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 40/59 (67%), Gaps = 9/59 (15%)
Query: 66 GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLV 124
G P+VY+FG G Y A+VL LLGPSL+DLF+LC FSLKTVLMIA QL+
Sbjct: 66 GIPQVYYFGPC---------GKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLI 115
>pdb|2CMW|A Chain A, Structure Of Human Casein Kinase 1 Gamma-1 In Complex With
2-(2-Hydroxyethylamino)-6-(3-Chloroanilino)-9-
Isopropylpurine (Casp Target)
Length = 310
Score = 184 bits (466), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 84/114 (73%), Positives = 96/114 (84%)
Query: 150 IEGTVTAKQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLC 209
I + +QSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKR TPIE LC
Sbjct: 178 INTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRNTPIEALC 237
Query: 210 EGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDWTGRAM 263
E PEE++TYLRYVRRLDFFE PDY++LR +F +LFE++GY D +DW GR +
Sbjct: 238 ENFPEEMATYLRYVRRLDFFEKPDYEYLRTLFTDLFEKKGYTFDYAYDWVGRPI 291
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 40/59 (67%), Gaps = 9/59 (15%)
Query: 66 GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLV 124
G P+VY+FG G Y A+VL LLGPSL+DLF+LC F+LKTVLMIA QL+
Sbjct: 58 GLPQVYYFG---------PXGKYNAMVLELLGPSLEDLFDLCDRTFTLKTVLMIAIQLL 107
>pdb|1EH4|A Chain A, Binary Complex Of Casein Kinase-1 From S. Pombe With An
Atp Competitive Inhibitor, Ic261
pdb|1EH4|B Chain B, Binary Complex Of Casein Kinase-1 From S. Pombe With An
Atp Competitive Inhibitor, Ic261
pdb|1CSN|A Chain A, Binary Complex Of Casein Kinase-1 With Mgatp
Length = 298
Score = 164 bits (416), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 123/239 (51%), Gaps = 54/239 (22%)
Query: 66 GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQL-- 123
G P VY+FG+ G + LV+ LLGPSL+DL +LCG +FS+KTV M A+Q+
Sbjct: 67 GIPNVYYFGQ---------EGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLA 117
Query: 124 ----------------------------------------VKF---PFSYXXXXXXXXXX 140
VKF P +
Sbjct: 118 RVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKN 177
Query: 141 XXXXXXXXXIEGTVTAKQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTK 200
I + +QSRRDDLEALGH+FMYFLRGSLPWQGLKA T K++Y++IG+ K
Sbjct: 178 LSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKK 237
Query: 201 RATPIEVLCEGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDWT 259
++TP+ LC G PEE Y+ Y R L F TPDYD+L+ +F+++ ER +D FDW
Sbjct: 238 QSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTEDENFDWN 296
>pdb|2CSN|A Chain A, Binary Complex Of Casein Kinase-1 With Cki7
Length = 297
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 123/239 (51%), Gaps = 54/239 (22%)
Query: 66 GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQL-- 123
G P VY+FG+ G + LV+ LLGPSL+DL +LCG +FS+KTV M A+Q+
Sbjct: 66 GIPNVYYFGQ---------EGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLA 116
Query: 124 ----------------------------------------VKF---PFSYXXXXXXXXXX 140
VKF P +
Sbjct: 117 RVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKN 176
Query: 141 XXXXXXXXXIEGTVTAKQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTK 200
I + +QSRRDDLEALGH+FMYFLRGSLPWQGLKA T K++Y++IG+ K
Sbjct: 177 LSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKK 236
Query: 201 RATPIEVLCEGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDWT 259
++TP+ LC G PEE Y+ Y R L F TPDYD+L+ +F+++ ER +D FDW
Sbjct: 237 QSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTEDENFDWN 295
>pdb|3SV0|A Chain A, Crystal Structure Of Casein Kinase-1 Like Protein In Plant
Length = 483
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/130 (50%), Positives = 87/130 (66%), Gaps = 5/130 (3%)
Query: 157 KQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCEGHPEEL 216
+QSRRDDLE+LG++ MYFLRGSLPWQGLKA T K++Y+KI + K AT IE LC G+P E
Sbjct: 189 EQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIEALCRGYPTEF 248
Query: 217 STYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDWTGRAMVVSSTNGELGTDD 276
++Y Y R L F + PDY +L+R+F +LF R G+ D FDWT ++ ++ +
Sbjct: 249 ASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREGFQFDYVFDWT----ILKYQQSQIASAP 304
Query: 277 PTA-GHSNTP 285
P A GH P
Sbjct: 305 PRAVGHGAGP 314
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
Query: 66 GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLVK 125
G P V +FG G Y LV+ LLGPSL+DLF C + SLKTVLM+A Q++
Sbjct: 64 GIPNVRWFG---------VEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMIN 114
>pdb|4HNI|A Chain A, Crystal Structure Of Ck1e In Complex With Pf4800567
pdb|4HNI|B Chain B, Crystal Structure Of Ck1e In Complex With Pf4800567
pdb|4HOK|A Chain A, Crystal Structure Of Apo Ck1e
pdb|4HOK|C Chain C, Crystal Structure Of Apo Ck1e
pdb|4HOK|E Chain E, Crystal Structure Of Apo Ck1e
pdb|4HOK|G Chain G, Crystal Structure Of Apo Ck1e
pdb|4HOK|I Chain I, Crystal Structure Of Apo Ck1e
pdb|4HOK|K Chain K, Crystal Structure Of Apo Ck1e
pdb|4HOK|M Chain M, Crystal Structure Of Apo Ck1e
pdb|4HOK|O Chain O, Crystal Structure Of Apo Ck1e
pdb|4HOK|Q Chain Q, Crystal Structure Of Apo Ck1e
pdb|4HOK|S Chain S, Crystal Structure Of Apo Ck1e
pdb|4HOK|U Chain U, Crystal Structure Of Apo Ck1e
pdb|4HOK|W Chain W, Crystal Structure Of Apo Ck1e
Length = 296
Score = 130 bits (328), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 80/110 (72%)
Query: 150 IEGTVTAKQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLC 209
I + +QSRRDDLE+LG++ MYF GSLPWQGLKA T +++Y++I + K +TPIEVLC
Sbjct: 184 INTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLC 243
Query: 210 EGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDWT 259
+G+P E STYL + R L F + PDY +LR++F LF R+G+ D FDW
Sbjct: 244 KGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWN 293
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 86 GGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLV 124
G Y +V+ LLGPSL+DLF C +FSLKTVL++A Q++
Sbjct: 77 GDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMI 115
>pdb|3UYS|A Chain A, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|B Chain B, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|C Chain C, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|D Chain D, Crystal Structure Of Apo Human Ck1d
pdb|3UYT|A Chain A, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|B Chain B, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|C Chain C, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|D Chain D, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UZP|A Chain A, Crystal Structure Of Ck1d With Pf670462 From P21 Crystal
Form
pdb|3UZP|B Chain B, Crystal Structure Of Ck1d With Pf670462 From P21 Crystal
Form
pdb|4HNF|A Chain A, Crystal Structure Of Ck1d In Complex With Pf4800567
pdb|4HNF|B Chain B, Crystal Structure Of Ck1d In Complex With Pf4800567
pdb|4HGT|A Chain A, Crystal Structure Of Ck1d With Compound 13
pdb|4HGT|B Chain B, Crystal Structure Of Ck1d With Compound 13
Length = 296
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 80/110 (72%)
Query: 150 IEGTVTAKQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLC 209
I + +QSRRDDLE+LG++ MYF GSLPWQGLKA T +++Y++I + K +TPIEVLC
Sbjct: 184 INTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLC 243
Query: 210 EGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDWT 259
+G+P E +TYL + R L F + PDY +LR++F LF R+G+ D FDW
Sbjct: 244 KGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWN 293
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 86 GGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLV 124
G Y +V+ LLGPSL+DLF C +FSLKTVL++A Q++
Sbjct: 77 GDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMI 115
>pdb|1CKJ|A Chain A, Casein Kinase I Delta Truncation Mutant Containing
Residues 1-317 Complex With Bound Tungstate
pdb|1CKJ|B Chain B, Casein Kinase I Delta Truncation Mutant Containing
Residues 1-317 Complex With Bound Tungstate
pdb|1CKI|A Chain A, Recombinant Casein Kinase I Delta Truncation Mutant
Containing Residues 1-317
pdb|1CKI|B Chain B, Recombinant Casein Kinase I Delta Truncation Mutant
Containing Residues 1-317
Length = 317
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 80/110 (72%)
Query: 150 IEGTVTAKQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLC 209
I + +QSRRDDLE+LG++ MYF GSLPWQGLKA T +++Y++I + K +TPIEVLC
Sbjct: 182 INTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLC 241
Query: 210 EGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDWT 259
+G+P E +TYL + R L F + PDY +LR++F LF R+G+ D FDW
Sbjct: 242 KGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWN 291
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 86 GGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLV 124
G Y +V+ LLGPSL+DLF C +FSLKTVL++A Q++
Sbjct: 75 GDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMI 113
>pdb|2KTY|A Chain A, Solution Structure Of Human Vaccinia Related Kinase-1
pdb|2KUL|A Chain A, Solution Structure Of Human Vaccinia Related Kinase
1(Vrk1)
Length = 368
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 159 SRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLC---EGHPEE 215
SRR DLE LG+ + +L G LPW+ D R KI + + C + P E
Sbjct: 239 SRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPEKNKPGE 298
Query: 216 LSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFD 257
++ Y+ V+ LD+ E P Y++LR I + + G DDG+ D
Sbjct: 299 IAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLD 340
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 66 GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLV 124
G P+ Y+ + DK +G Y+ +++ G LQ ++E RFS KTVL ++ +++
Sbjct: 109 GVPK-YWGSGLHDK----NGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRIL 162
>pdb|2LAV|A Chain A, Nmr Solution Structure Of Human Vaccinia-Related Kinase 1
Length = 361
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 159 SRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLC---EGHPEE 215
SRR DLE LG+ + +L G LPW+ D R KI + + C + P E
Sbjct: 239 SRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPEKNKPGE 298
Query: 216 LSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFD 257
++ Y+ V+ LD+ E P Y++LR I + + G DDG+ D
Sbjct: 299 IAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLD 340
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 66 GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLV 124
G P+ Y+ + DK +G Y+ +++ G LQ ++E RFS KTVL ++ +++
Sbjct: 109 GVPK-YWGSGLHDK----NGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRIL 162
>pdb|3OP5|A Chain A, Human Vaccinia-Related Kinase 1
pdb|3OP5|B Chain B, Human Vaccinia-Related Kinase 1
pdb|3OP5|C Chain C, Human Vaccinia-Related Kinase 1
pdb|3OP5|D Chain D, Human Vaccinia-Related Kinase 1
Length = 364
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 159 SRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLC---EGHPEE 215
SRR DLE LG+ + +L G LPW+ D R KI + + C P E
Sbjct: 239 SRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPAANAPGE 298
Query: 216 LSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFD 257
++ Y+ V+ LD+ E P Y++LR I + + G DDG+ D
Sbjct: 299 IAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLD 340
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 66 GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLV 124
G P+ Y+ + DK +G Y+ +++ G LQ ++E RFS KTVL ++ +++
Sbjct: 109 GVPK-YWGSGLHDK----NGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRIL 162
>pdb|2JII|A Chain A, Structure Of Vaccinia Related Kinase 3
pdb|2JII|B Chain B, Structure Of Vaccinia Related Kinase 3
Length = 352
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 159 SRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCEGH----PE 214
SRR DL++LG+ + +L G LPW +T QK + P C GH E
Sbjct: 246 SRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVDKPGPFVGPC-GHWIRPSE 304
Query: 215 ELSTYLRYVRRLDFFETPDYDHLRRIFAELFE 246
L YL+ V L + E P Y LR L +
Sbjct: 305 TLQKYLKVVMALTYEEKPPYAMLRNNLEALLQ 336
>pdb|2V62|A Chain A, Structure Of Vaccinia-Related Kinase 2
pdb|2V62|B Chain B, Structure Of Vaccinia-Related Kinase 2
Length = 345
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 17/93 (18%)
Query: 159 SRRDDLEALGHMFMYFLRGSLPW----------QGLKADTLKERYQKIGDTKRATPIEVL 208
SRR D+E LG+ + +L G LPW Q K + L E Q + K A
Sbjct: 238 SRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDELPQSV--LKWAPSGSSC 295
Query: 209 CEGHPEELSTYLRYVRRLDFFETPDYDHLRRIF 241
C E++ +L L + E P+Y L++I
Sbjct: 296 C-----EIAQFLVCAHSLAYDEKPNYQALKKIL 323
>pdb|3F5R|A Chain A, The Crystal Structure Of A Subunit Of The Heterodimeric
Fact Complex (Spt16p-Pob3p)
Length = 191
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 209 CEGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAELF----ERRGYVDDGEFDWT----G 260
C G+ +++T + V +LD F DY+ ++ F F E+R + G ++W
Sbjct: 82 CRGYDLKINTKNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRG-WNWGKTDLA 140
Query: 261 RAMVVSSTNGELGTDDPTAGHSNTPITAQQEVEI 294
R V + NG+ + P A +NT +T++ EV I
Sbjct: 141 RNEXVFALNGKPTFEIPYARINNTNLTSKNEVGI 174
>pdb|2A6B|A Chain A, Crystal Structure Of A Putative Transcriptional Regulator
Of The Tena Family (spr0628) From Streptococcus
Pneumoniae R6 At 1.70 A Resolution
Length = 234
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 209 CEGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAEL 244
C H ++L + LR+ ++L F E + + ++ F EL
Sbjct: 80 CVAHADKLESKLRFAKQLGFLEADEDGYFQKAFKEL 115
>pdb|1Z72|A Chain A, Structure Of A Putative Transcriptional Regulator From
Streptococcus Pneumoniae
pdb|1Z72|B Chain B, Structure Of A Putative Transcriptional Regulator From
Streptococcus Pneumoniae
Length = 225
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 209 CEGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAEL 244
C H ++L + LR+ ++L F E + + ++ F EL
Sbjct: 71 CVAHADKLESKLRFAKQLGFLEADEDGYFQKAFKEL 106
>pdb|3BV8|A Chain A, Crystal Structure Of The N-Terminal Domain Of
Tetrahydrodipicolinate Acetyltransferase From
Staphylococcus Aureus
Length = 87
Score = 28.5 bits (62), Expect = 5.5, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 186 ADTLKERYQKIGDTKRATPIEVLCEG------HPEELSTYLRYVRRLDFFETPDYDHLRR 239
A T +E Q I D K+ TPI+V G +PE + ++ F E D+
Sbjct: 3 ALTAEEIIQYISDAKKFTPIKVYLNGNFEGITYPESFKVFGSEQSKVIFCEADDWKPFYE 62
Query: 240 IFAELFE 246
+ FE
Sbjct: 63 AYGSQFE 69
>pdb|4ECD|A Chain A, 2.5 Angstrom Resolution Crystal Structure Of
Bifidobacterium Longum Chorismate Synthase
pdb|4ECD|B Chain B, 2.5 Angstrom Resolution Crystal Structure Of
Bifidobacterium Longum Chorismate Synthase
Length = 398
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 14/71 (19%)
Query: 162 DDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATP-----IEVLCEGHPEEL 216
DDLEAL + P + L + ++I + K+A IEVL G P +
Sbjct: 187 DDLEALD---------ASPVRTLDKEAEVRIIERINEAKKAADTLGGVIEVLAYGVPAGI 237
Query: 217 STYLRYVRRLD 227
TY+ RRLD
Sbjct: 238 GTYVESDRRLD 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,317,742
Number of Sequences: 62578
Number of extensions: 309200
Number of successful extensions: 668
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 36
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)