RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11491
(314 letters)
>gnl|CDD|153039 pfam12605, CK1gamma_C, Casein kinase 1 gamma C terminal. This
domain family is found in eukaryotes, and is typically
between 54 and 99 amino acids in length. The family is
found in association with pfam00069. CK1gamma is a
membrane-bound member of the CK1 family.
Gain-of-function and loss-of-function experiments show
that CK1gamma is both necessary and sufficient to
transduce LRP6 signalling in vertebrates and Drosophila
cells.
Length = 71
Score = 49.1 bits (117), Expect = 4e-08
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 260 GRAMVVSSTNGELGTDDPTAGHSNTPI 286
G + +SSTNGEL TDDP GHS PI
Sbjct: 45 GSSQALSSTNGELNTDDPNTGHSTAPI 71
>gnl|CDD|165211 PHA02882, PHA02882, putative serine/threonine kinase; Provisional.
Length = 294
Score = 49.6 bits (118), Expect = 7e-07
Identities = 25/86 (29%), Positives = 42/86 (48%)
Query: 156 AKQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCEGHPEE 215
A +RR DLE+LG+ + + LPW+G + K KR ++ + +
Sbjct: 208 ACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCDFIKRLHEGKIKIKNANKF 267
Query: 216 LSTYLRYVRRLDFFETPDYDHLRRIF 241
+ ++ V +L + E PDYD L +IF
Sbjct: 268 IYDFIECVTKLSYEEKPDYDALIKIF 293
>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain.
Length = 260
Score = 39.9 bits (94), Expect = 8e-04
Identities = 10/56 (17%), Positives = 18/56 (32%)
Query: 159 SRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCEGHPE 214
+ D+ +LG + L G P+ G + ++I G E
Sbjct: 177 GPKVDVWSLGVILYELLTGKPPFSGENILDQLQLIRRILGPPLEFDEPKWSSGSEE 232
>gnl|CDD|237800 PRK14716, PRK14716, bacteriophage N4 adsorption protein B;
Provisional.
Length = 504
Score = 34.6 bits (80), Expect = 0.054
Identities = 35/106 (33%), Positives = 45/106 (42%), Gaps = 18/106 (16%)
Query: 185 KADTLKERYQKIGDTKRATPIE----VL--CEG--HPEELSTYLRYVRRLDFFETPDYDH 236
KAD L YQ I +R I VL E HP EL Y + R DF + P +
Sbjct: 137 KADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLLPRHDFVQLPVFS- 195
Query: 237 LRRIFAELFERRG-YVDDGEF-DWTGRAMVVSSTNGELGTDDPTAG 280
L R + E G Y+D EF + + + V LG P+AG
Sbjct: 196 LPRDWGEWV--AGTYMD--EFAESHLKDLPVREA---LGGLIPSAG 234
>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function
prediction only / Signal transduction mechanisms /
Transcription / DNA replication, recombination, and
repair].
Length = 384
Score = 33.2 bits (74), Expect = 0.15
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 119 IAQQLVKFPFSYSFTSFLKTSLKTKKKR-RFLIEGTVTAKQSRRDDLEALGHMFMYFLRG 177
+A+ L + S + TS+ T ++ G A S D+ +LG L G
Sbjct: 148 LAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTG 207
Query: 178 SLPWQGLKADTLKERYQKI 196
P++G K + + KI
Sbjct: 208 LPPFEGEKNSSATSQTLKI 226
>gnl|CDD|222393 pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is
frequently found N-terminal to the transposase, IS
family DDE_Tnp_1, pfam01609 and its relatives.
Length = 90
Score = 29.4 bits (67), Expect = 0.55
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 12/53 (22%)
Query: 205 IEVLCEGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFD 257
IE E L +L + P +D +RR+ A L D +
Sbjct: 42 IEEFGADKLEWLRKFLGLPNGI-----PSHDTIRRVLARL-------DPEALE 82
>gnl|CDD|227494 COG5165, POB3, Nucleosome-binding factor SPN, POB3 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 508
Score = 31.1 bits (70), Expect = 0.80
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 209 CEGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDD--------GEFDWTG 260
G+ ++ V LD F D D L+ IF+E F + GE G
Sbjct: 54 VRGYKLKIRVKGNAVYELDGFSQNDIDELKNIFSEYFRITLEQKELSIAGWNWGELGING 113
Query: 261 RAMVVSSTNGELGTDDPTAGHSNTPITAQQEVEI 294
+ V N + + P NT + + EV +
Sbjct: 114 QEA-VFFRNTKPIFEIPVDDIENTNLDIKNEVSV 146
>gnl|CDD|129429 TIGR00329, gcp_kae1, metallohydrolase, glycoprotease/Kae1 family.
This subfamily includes the well-studied secreted
O-sialoglycoprotein endopeptidase (glycoprotease, EC
3.4.24.57) of Pasteurella haemolytica, a pathogen. A
member from Riemerella anatipestifer, associated with
cohemolysin activity, likewise is exported without
benefit of a classical signal peptide and shows
glycoprotease activity on the test substrate
glycophorin. However, archaeal members of this subfamily
show unrelated activities as demonstrated in Pyrococcus
abyssi: DNA binding, iron binding, apurinic endonuclease
activity, genomic association with a kinase domain, and
no glycoprotease activity. This family thus pulls
together a set of proteins as a homology group that
appears to be near-universal in life, yet heterogeneous
in assayed function between bacteria and archaea
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 305
Score = 30.0 bits (68), Expect = 1.5
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 40/129 (31%)
Query: 73 FGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFE-----------------LCGFRFS-LK 114
G+ DK + G GY GP +++L + + F FS LK
Sbjct: 159 VGEAFDKVARLLGLGYPG------GPKIEELAKKGDKLPFYFPLPYTVKPMLDFSFSGLK 212
Query: 115 TVLMIA-QQLVKFP-------FSYSF--TSF------LKTSLKTKKKRRFLIEGTVTAKQ 158
T + ++L K +YSF T+F K +LK + ++ G V+A +
Sbjct: 213 TAALRKIEKLKKNLNEATKEDIAYSFQETAFDHLIEKTKRALKDTGPKELVLVGGVSANK 272
Query: 159 SRRDDLEAL 167
R+ LE L
Sbjct: 273 RLREMLETL 281
>gnl|CDD|152797 pfam12362, DUF3646, DNA polymerase III gamma and tau subunits C
terminal. This domain family is found in bacteria, and
is approximately 120 amino acids in length. The family
is found in association with pfam00004. The proteins in
this family are frequently annotated as the gamma and
tau subunits of DNA polymerase III, however there is
little accompanying literature to back this up.
Length = 117
Score = 28.7 bits (65), Expect = 1.6
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 17/63 (26%)
Query: 215 ELSTYLRYVR----RLDFFETPDYDH--LRRIFAELFERRGYVDDGEFDWTGRAMVVSST 268
E+ +R V R++F TP +R+ +L E WTGR VS +
Sbjct: 24 EVERDVRLVSFEPGRIEFRPTPGAPRDLAQRLGRKLQE-----------WTGRRWAVSLS 72
Query: 269 NGE 271
N
Sbjct: 73 NEG 75
>gnl|CDD|182060 PRK09755, PRK09755, putative ABC transporter periplasmic-binding
protein; Provisional.
Length = 535
Score = 30.1 bits (67), Expect = 1.8
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 151 EGTVTAKQSRRDDLEALGHMFMYFLRGSLPW---QGLKADTLKERYQKIGDTKRATP 204
EG V Q+ R ++ G +++ LR L W Q L A+ +Q+ D K A+P
Sbjct: 73 EGQVQPAQAERWEILDGGKRYIFHLRSGLQWSDGQPLTAEDFVLGWQRAVDPKTASP 129
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 324
Score = 29.7 bits (67), Expect = 2.0
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 227 DFFETPDYDHLRRIFAEL-FERRGYVDDGEF 256
D L+ IFA+L F R VD F
Sbjct: 47 PHEPQTIIDQLQLIFAQLQFGNRSVVDPSGF 77
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 29.6 bits (67), Expect = 2.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 164 LEALGHMFMYFLRGSLPWQGLKADTLKERYQKIG 197
L LGH F+Y LR + L DT ER +++G
Sbjct: 72 LTTLGHHFVYRLRSEFIKRIL--DTHVERIEQLG 103
>gnl|CDD|218816 pfam05936, DUF876, Bacterial protein of unknown function (DUF876).
This family consists of a series of hypothetical
bacterial sequences of unknown function.
Length = 427
Score = 29.1 bits (66), Expect = 3.1
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 15/48 (31%)
Query: 212 HPE-----------ELSTYLRYVRRLDFFETPDYDH--LRRIFAELFE 246
HPE ELST+ RR P YDH L F+ LF+
Sbjct: 242 HPERLYRELLRLAGELSTFSSESRRPPAL--PPYDHDDLGASFSPLFD 287
>gnl|CDD|236986 PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional.
Length = 273
Score = 28.6 bits (65), Expect = 3.9
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 8/35 (22%)
Query: 212 HPEELSTYLRYVRR--LDF------FETPDYDHLR 238
PE+L+ Y RY RR LD FE D+ R
Sbjct: 235 QPEKLTVYARYTRRGGLDINPFRSNFEFAPPDNGR 269
>gnl|CDD|220790 pfam10510, PIG-S, Phosphatidylinositol-glycan biosynthesis class S
protein. PIG-S is one of several key, core, components
of the glycosylphosphatidylinositol (GPI) trans-amidase
complex that mediates GPI anchoring in the endoplasmic
reticulum. Anchoring occurs when a protein's C-terminal
GPI attachment signal peptide is replaced with a
pre-assembled GPI. Mammalian GPITransamidase consists of
at least five components: Gaa1, Gpi8, PIG-S, PIG-T, and
PIG-U, all five of which are required for function. It
is possible that Gaa1, Gpi8, PIG-S, and PIG-T form a
tightly associated core that is only weakly associated
with PIG-U. The exact function of PIG-S is unclear.
Length = 502
Score = 28.4 bits (64), Expect = 6.2
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 18/72 (25%)
Query: 2 TEILY--SLSKSLRFDDGPKDWSGGLDWLRALSFLPSALCGVSTHIVDRLSIDASSSSSA 59
T++ Y +LS +D+ + L L H ++ S + S S+S
Sbjct: 234 TQVQYYATLSLQPLYDEKQSSYV--LKE----DDLS--------HFIN--SAEWSLSTSI 277
Query: 60 DDPPPHGFPRVY 71
P F
Sbjct: 278 TSNPVLNFVVYV 289
>gnl|CDD|198289 cd03180, GST_C_2, C-terminal, alpha helical domain of an unknown
subfamily 2 of Glutathione S-transferases. Glutathione
S-transferase (GST) C-terminal domain family, unknown
subfamily 2; composed of uncharacterized bacterial
proteins, with similarity to GSTs. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
GSTs also show GSH peroxidase activity and are involved
in the synthesis of prostaglandins and leukotrienes. The
GST fold contains an N-terminal thioredoxin-fold domain
and a C-terminal alpha helical domain, with an active
site located in a cleft between the two domains. GSH
binds to the N-terminal domain while the hydrophobic
substrate occupies a pocket in the C-terminal domain.
Length = 110
Score = 26.9 bits (60), Expect = 6.3
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 229 FETPDYDHLRRIFAELFERRGY 250
E P HL R +A L +R +
Sbjct: 89 IERPALPHLERWYARLSQRPAF 110
>gnl|CDD|221425 pfam12110, Nup96, Nuclear protein 96. Nup96 (often known by the
name of its yeast homolog Nup145C) is part of the Nup84
heptameric complex in the nuclear pore complex. Nup96
complexes with Sec13 in the middle of the heptamer. The
function of the heptamer is to coat the curvature of the
nuclear pore complex between the inner and outer nuclear
membranes. Nup96 is predicted to be an alpha helical
solenoid. The interaction between Nup96 and Sec13 is the
point of curvature in the heptameric complex.
Length = 290
Score = 27.7 bits (62), Expect = 7.4
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 12/96 (12%)
Query: 5 LYSLS--KSLRFDDGPKDWSGGLDWLRALSFLPSALCGVSTH--IVDRLSIDASSSSSAD 60
+Y L R + LDWL+AL G+ I D LSI+ + S D
Sbjct: 70 IYELLAGNVFRSLGDSGENEFELDWLQAL--------GLRLWYGISDDLSIEDAVQSFLD 121
Query: 61 DPPPHGFPRVYFFGKVMDKTDKPSGGGYQALVLSLL 96
P D SG ++ + LL
Sbjct: 122 ALSSGEEPAPPPPPTEGVADDVNSGEPFEDPLFDLL 157
>gnl|CDD|235579 PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.
Length = 495
Score = 27.8 bits (63), Expect = 9.5
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 214 EELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRG 249
E + L YV D + Y+ L+ + EL E RG
Sbjct: 80 ERFLSRLYYVS-GDVTDPESYERLKELLEELDEERG 114
>gnl|CDD|219290 pfam07084, Spot_14, Thyroid hormone-inducible hepatic protein Spot
14. This family consists of several thyroid
hormone-inducible hepatic protein (Spot 14 or S14)
sequences. Mainly expressed in tissues that synthesise
triglycerides, the mRNA coding for Spot 14 has been
shown to be increased in rat liver by insulin, dietary
carbohydrates, glucose in hepatocyte culture medium, as
well as thyroid hormone. In contrast, dietary fats and
polyunsaturated fatty acids, have been shown to decrease
the amount of Spot 14 mRNA, while an elevated level of
cAMP acts as a dominant negative factor. In addition,
liver-specific factors or chromatin organisation of the
gene have been shown to contribute to the regulation of
its expression. Spot 14 protein is thought to be
required for induction of hepatic lipogenesis.
Length = 160
Score = 27.1 bits (60), Expect = 9.8
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 163 DLEALGHMFMYFLRGSLPWQGLKADTLKERY-QKIG 197
DLEA H + L L KA+ L RY ++IG
Sbjct: 119 DLEAQFHYHLKGLHTVLSKLTRKANELTNRYKEEIG 154
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.422
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,502,119
Number of extensions: 1605050
Number of successful extensions: 1480
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1479
Number of HSP's successfully gapped: 28
Length of query: 314
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 217
Effective length of database: 6,635,264
Effective search space: 1439852288
Effective search space used: 1439852288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)