RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11491
(314 letters)
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor,
PF670462, transferase-transferase I complex; HET: 0CK;
1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Length = 296
Score = 236 bits (605), Expect = 3e-77
Identities = 87/238 (36%), Positives = 124/238 (52%), Gaps = 52/238 (21%)
Query: 65 HGFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLV 124
G P + + G G Y +V+ LLGPSL+DLF C +FSLKTVL++A Q++
Sbjct: 65 VGIPTIRWCGAE---------GDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMI 115
Query: 125 KFPFSYSFTSFLKTSLK---------TKKKRRFLIEGTVTAK------------------ 157
+F+ +K K ++I+ + K
Sbjct: 116 SRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNL 175
Query: 158 ----------------QSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKR 201
QSRRDDLE+LG++ MYF GSLPWQGLKA T +++Y++I + K
Sbjct: 176 TGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKM 235
Query: 202 ATPIEVLCEGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDWT 259
+TPIEVLC+G+P E +TYL + R L F + PDY +LR++F LF R+G+ D FDW
Sbjct: 236 STPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWN 293
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A
{Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A*
2csn_A*
Length = 298
Score = 231 bits (591), Expect = 5e-75
Identities = 94/240 (39%), Positives = 124/240 (51%), Gaps = 54/240 (22%)
Query: 65 HGFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQL- 123
G P VY+FG+ G + LV+ LLGPSL+DL +LCG +FS+KTV M A+Q+
Sbjct: 66 TGIPNVYYFGQE---------GLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQML 116
Query: 124 --VKFPFSYSFTS-------FLKTSLKTKKKRRFLIEGTVTAK----------------- 157
V+ S FL +K + K
Sbjct: 117 ARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKK 176
Query: 158 ------------------QSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDT 199
QSRRDDLEALGH+FMYFLRGSLPWQGLKA T K++Y++IG+
Sbjct: 177 NLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEK 236
Query: 200 KRATPIEVLCEGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDWT 259
K++TP+ LC G PEE Y+ Y R L F TPDYD+L+ +F+++ ER +D FDW
Sbjct: 237 KQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTEDENFDWN 296
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol,
transferase; 2.00A {Oryza sativa japonica group}
Length = 483
Score = 233 bits (596), Expect = 1e-73
Identities = 94/238 (39%), Positives = 124/238 (52%), Gaps = 52/238 (21%)
Query: 65 HGFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLV 124
G P V +FG G Y LV+ LLGPSL+DLF C + SLKTVLM+A Q++
Sbjct: 63 TGIPNVRWFGVE---------GDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMI 113
Query: 125 KFPFSYSFTSFLKTSLK---------TKKKRRFLIEGTVTAK------------------ 157
SFL +K + + ++I+ + K
Sbjct: 114 NRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNL 173
Query: 158 ----------------QSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKR 201
QSRRDDLE+LG++ MYFLRGSLPWQGLKA T K++Y+KI + K
Sbjct: 174 TGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKV 233
Query: 202 ATPIEVLCEGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDWT 259
AT IE LC G+P E ++Y Y R L F + PDY +L+R+F +LF R G+ D FDWT
Sbjct: 234 ATSIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREGFQFDYVFDWT 291
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino
acid sequence, binding sites, domain, models, molecular;
HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Length = 364
Score = 228 bits (583), Expect = 4e-73
Identities = 55/240 (22%), Positives = 91/240 (37%), Gaps = 52/240 (21%)
Query: 66 GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLVK 125
G P+ + G +G Y+ +++ G LQ ++E RFS KTVL ++ +++
Sbjct: 109 GVPKYWGSG-----LHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILD 163
Query: 126 ----------------------------------FPFSYSFTSFLKTSLKTKKKRRFLIE 151
+ +Y + +R
Sbjct: 164 ILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHD- 222
Query: 152 GTVT---------AKQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRA 202
GT+ SRR DLE LG+ + +L G LPW+ D R KI +
Sbjct: 223 GTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENI 282
Query: 203 TPIEVLC---EGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDWT 259
+ C P E++ Y+ V+ LD+ E P Y++LR I + + G DDG+ D +
Sbjct: 283 ASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLDLS 342
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3;
transferase, pseudo kinase domain, vaccinia related
kinase, ATP-binding; 2.00A {Homo sapiens}
Length = 352
Score = 221 bits (566), Expect = 1e-70
Identities = 51/244 (20%), Positives = 76/244 (31%), Gaps = 56/244 (22%)
Query: 63 PPHGFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFR-FSLKTVLMIAQ 121
P P FG Y+ LVL LG SLQ ++ S ++VL +A
Sbjct: 115 PLLAIPTCMGFGV--------HQDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVAC 166
Query: 122 QLVK----------------------------------FPFSYSFTSFLKTSLKTKKKRR 147
+L+ + F++ + + + R
Sbjct: 167 RLLDALEFLHENEYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPS-GKHVAYVEGSR 225
Query: 148 FLIEGTVT---------AKQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGD 198
EG + SRR DL++LG+ + +L G LPW +T QK
Sbjct: 226 SPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKF 285
Query: 199 TKRATPIEVLCEG---HPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGE 255
+ P C E L YL+ V L + E P Y LR L +
Sbjct: 286 VDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLRVSPYDP 345
Query: 256 FDWT 259
Sbjct: 346 IGLP 349
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding,
membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Length = 345
Score = 213 bits (543), Expect = 3e-67
Identities = 44/243 (18%), Positives = 77/243 (31%), Gaps = 58/243 (23%)
Query: 66 GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLVK 125
G P Y G K G Y+ +V+ LG LQ + G F TVL + +++
Sbjct: 109 GIPLFYGSGLTEFK-----GRSYRFMVMERLGIDLQKISGQNG-TFKKSTVLQLGIRMLD 162
Query: 126 ----------------------------------FPFSYSFTSFLKTSLKTKKKRRFLIE 151
+ SY + + R+
Sbjct: 163 VLEYIHENEYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHN- 221
Query: 152 GTVT---------AKQSRRDDLEALGHMFMYFLRGSLPWQGL---KADTLKERYQKIGDT 199
GT+ SRR D+E LG+ + +L G LPW+ + + +
Sbjct: 222 GTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDEL 281
Query: 200 KRATPIEVLCEGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDWT 259
++ E++ +L L + E P+Y L++I G D++
Sbjct: 282 PQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGIP-----LGPLDFS 336
Query: 260 GRA 262
+
Sbjct: 337 TKG 339
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase,
transferase, ATP- binding, phosphorylation,
nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB:
2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Length = 330
Score = 188 bits (480), Expect = 5e-58
Identities = 85/104 (81%), Positives = 96/104 (92%), Gaps = 1/104 (0%)
Query: 158 QSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCEGHPEELS 217
QSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCE P E++
Sbjct: 194 QSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENFP-EMA 252
Query: 218 TYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDWTGR 261
TYLRYVRRLDFFE PDYD+LR++F +LF+R+GY+ D E+DW G+
Sbjct: 253 TYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDWIGK 296
Score = 79.7 bits (197), Expect = 3e-17
Identities = 34/61 (55%), Positives = 40/61 (65%), Gaps = 9/61 (14%)
Query: 65 HGFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLV 124
G P+VY+FG G Y A+VL LLGPSL+DLF+LC FSLKTVLMIA QL+
Sbjct: 65 DGIPQVYYFGPC---------GKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLI 115
Query: 125 K 125
Sbjct: 116 S 116
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 6e-07
Identities = 53/342 (15%), Positives = 88/342 (25%), Gaps = 137/342 (40%)
Query: 1 MTEILYSLSKSLRFDDGPKDWSGGLD---WLRALSFLPSALCGVSTHIVDRLSIDASSSS 57
E L L ++ D K ++ GL+ WL S P D L S
Sbjct: 191 SAETLSELIRTT--LDAEKVFTQGLNILEWLENPSNTPD---------KDYL---LSIPI 236
Query: 58 SADDPPPHG---FPRVYFFGKVMDKT-----DKPSG--GGYQALVLSLL---GPSLQDLF 104
S P G K++ T G G Q LV ++ S + F
Sbjct: 237 SC---PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 105 EL----------CGFRFSLKTVLMIAQQLVKFPFSYSFTSFLKTSLKTKKKRRFLIEGTV 154
G R + +P + S L+ SL+ EG
Sbjct: 294 VSVRKAITVLFFIGVR---------CYEA--YPNTSLPPSILEDSLENN-------EGVP 335
Query: 155 TAKQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIE-------- 206
+ M S+ L + +++ + T P
Sbjct: 336 S-------------PML------SI--SNLTQEQVQDY---VNKTNSHLPAGKQVEISLV 371
Query: 207 ------VLCEGHPEEL---STYLRYV---------------RRLDF----------FETP 232
V+ G P+ L + LR R+L F F +
Sbjct: 372 NGAKNLVVS-GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 233 DYDHLRRIFAELFERRGYVDDGEFDWTGRAM---VVSSTNGE 271
L + + + + + + V + +G
Sbjct: 431 ---LLVPASDLINKD---LVKNNVSFNAKDIQIPVYDTFDGS 466
Score = 49.7 bits (118), Expect = 7e-07
Identities = 49/266 (18%), Positives = 81/266 (30%), Gaps = 90/266 (33%)
Query: 28 LRAL---------SFL-PSALCGVSTHIVDRLS---IDASSSSSADDPP---PHGFPRVY 71
R L L P+A +++ + ++ + + + +ADD P +
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK-- 63
Query: 72 FFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFE---LCG-----FRFSL---------K 114
F G V + G + ++ L FE L G L K
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCL-----TEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 115 TVLMI-----AQQLVKFPFSYSFTSFLKTSLKTKKKRRFLIEGTVTAKQSRRDDLEALGH 169
T +I A+ + K PF S L ++ + I G G
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG---------------G- 162
Query: 170 MFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCEGHPEELSTYLR-------- 221
QG D +E + + T + L + E LS +R
Sbjct: 163 ------------QGNTDDYFEE-LRDLYQTYH-VLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 222 YVRRLDFFE-------TPDYDHLRRI 240
+ + L+ E TPD D+L I
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSI 234
Score = 43.1 bits (101), Expect = 9e-05
Identities = 26/121 (21%), Positives = 40/121 (33%), Gaps = 22/121 (18%)
Query: 181 WQGLKADT-LKERY-QKIGDTKRATPIEV-LCEGHPEELSTYLRYVRRLDFFETPD-YDH 236
W +AD K+ Y I D P+ + + G + Y + F D
Sbjct: 1646 WN--RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY-SAMIFETIVDGKLK 1702
Query: 237 LRRIFAELFER-RGYV---DDGEFDWTG---RAMVVSS--------TNGELGTDDPTAGH 281
+IF E+ E Y + G T A+ + + G + D AGH
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH 1762
Query: 282 S 282
S
Sbjct: 1763 S 1763
Score = 28.1 bits (62), Expect = 5.1
Identities = 6/23 (26%), Positives = 8/23 (34%), Gaps = 7/23 (30%)
Query: 25 LDWLRALSFLPSALCGVSTHIVD 47
+ W F THI+D
Sbjct: 488 VKWETTTQFKA-------THILD 503
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.002
Identities = 46/302 (15%), Positives = 76/302 (25%), Gaps = 91/302 (30%)
Query: 26 DWL----RALSFLPSALCGVSTHIVDRLSIDASSSSSADDPPPHGFPRVYFFGKVMD--K 79
+L + PS + + DRL D + R+ + K+
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF------AKYNVSRLQPYLKLRQALL 145
Query: 80 TDKPS---------GGGYQALVLSLLGPSLQDLFELCGFRF-----------SLKTVLMI 119
+P+ G G + L C F S +TVL +
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALD----VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 120 AQQL---VKFPF----SYSFTSFLKTSLKTKKKRRFLIEGTVTAKQSRR-----DD---- 163
Q+L + + +S L+ + RR L K +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-----KPYENCLLVLLNVQNA 256
Query: 164 --LEA-------------------LGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRA 202
A L + L D +K K D +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 203 T-PIEVLCEGHPEELSTYLRYVR----RLDFFETPDYDHLRRIFAELFE-------RRGY 250
P EV +P LS +R D ++ + D L I R+ +
Sbjct: 317 DLPREV-LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 251 VD 252
Sbjct: 376 DR 377
Score = 39.1 bits (90), Expect = 0.002
Identities = 43/320 (13%), Positives = 82/320 (25%), Gaps = 121/320 (37%)
Query: 45 IVDRLSIDASSSSSADDPPPHGFPRVY---FFGKV--MDKTDKPSGGGYQA-----LVLS 94
+ D LS ++ S D K D P + LS
Sbjct: 277 VTDFLSAATTTHISLDHHSM-TLTPDEVKSLLLKYLDCRPQDLPR----EVLTTNPRRLS 331
Query: 95 LLGPSLQD----------------------------------LFELCG-FRFSLK---TV 116
++ S++D +F+ F S +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 117 L-------------MIAQQLVKF--------PFSYSFTS-FLKTSLKTKKKR---RFLIE 151
L ++ +L K+ + S S +L+ +K + + R +++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 152 GTVTAKQSRRDDLEALGHMFMYF-------LRGSLPWQGLKADTLKERY-------QKIG 197
K DDL ++ YF L+ + + + QKI
Sbjct: 452 HYNIPKTFDSDDLIPP-YLDQYFYSHIGHHLKNIE--HPERMTLFRMVFLDFRFLEQKI- 507
Query: 198 DTKRATPIEVLCEGHP----EELSTYLRYVRR------------LDFFETPD-----YDH 236
R G ++L Y Y+ LDF + +
Sbjct: 508 ---RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 237 LRRI-FAELFERRGYVDDGE 255
+ A + E ++
Sbjct: 565 TDLLRIALMAEDEAIFEEAH 584
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase,
splicing, human, 10Z-hymendialdisine, structural
genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Length = 339
Score = 31.5 bits (72), Expect = 0.32
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 91 LVLSLLGPSLQDLFELCGFR-FSLKTVLMIAQQLVK 125
+V LLG S D + GF F L + +A Q+ K
Sbjct: 94 IVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICK 129
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria,
structural GE structural genomics consortium, SGC,
transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Length = 360
Score = 31.5 bits (72), Expect = 0.36
Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 91 LVLSLLGPSLQDLFELCGFR-FSLKTVLMIAQQLVK 125
L+ LGPSL ++ + F ++ + + +++K
Sbjct: 113 LIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILK 148
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase,
PP-type, putative cell cycle PR PSI, protein structure
initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2
c.26.2.5 d.229.1.1
Length = 433
Score = 31.2 bits (71), Expect = 0.38
Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 3/108 (2%)
Query: 189 LKERYQKIGDTKRATPIEVLCEGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERR 248
L + + I + + +R P D L RI+ E+ R
Sbjct: 228 LADDLAHCQSPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAR 287
Query: 249 GYVDDGEFDWTGRAMVVSSTNGELGTDDPTAGHSNTPITAQQEVEIVD 296
D A + +L G S + Q ++ ++
Sbjct: 288 E---DASPCLRLGAFEIRRYQSQLWWIKSVTGQSENIVPWQTWLQPLE 332
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase;
1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A
3nr9_A*
Length = 355
Score = 31.1 bits (71), Expect = 0.49
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 91 LVLSLLGPSLQDLFELCGFR-FSLKTVLMIAQQLVK 125
+ LLG + + + F+ + L V +A QL
Sbjct: 99 IAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCH 134
>2rgq_A Domain of unknown function with A cystatin-like F; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: MSE; 1.80A {Nostoc
punctiforme} SCOP: d.17.4.25
Length = 144
Score = 29.8 bits (67), Expect = 0.61
Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 7/73 (9%)
Query: 219 YLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDWTGRAMVVSSTNGELGTDDPT 278
R+ LD D ++ FA G + G+ + L T
Sbjct: 16 AARFEMSLD---KEDVENYLATFAS----DGALQGFWGIAKGKEELRQGFYAMLDTFARG 68
Query: 279 AGHSNTPITAQQE 291
H ++ Q
Sbjct: 69 KRHCSSNAIIQGN 81
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A;
serine/threonine-protein kinase, minibrain homolog,
nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A
{Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Length = 382
Score = 30.1 bits (68), Expect = 0.89
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 91 LVLSLLGPSLQDLFELCGFR-FSLKTVLMIAQQLVK 125
LV +L +L DL FR SL AQQ+
Sbjct: 133 LVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCT 168
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-structure,
beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus
anthracis}
Length = 597
Score = 29.6 bits (67), Expect = 1.4
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 214 EELSTYLRYVRRLDFFETPDYDHLRRIFAE-LFERRGYV 251
+ L L +R+L + +R A + E Y
Sbjct: 558 DMLRMMLSSLRKLTRHTPLNVIPKKREIAAKILEDERYT 596
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na
project on protein structural and functional analyses;
HET: FAD; 2.30A {Thermus thermophilus}
Length = 577
Score = 29.2 bits (66), Expect = 2.0
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 214 EELSTYLRYVRRLDFFETPDYDHLRRIFAE-LFERRGYV 251
+E RRL E D LRR AE + E GY
Sbjct: 536 DEARVVYSAARRLTKREPGDLVALRRQAAEAVLEAGGYP 574
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2;
KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase,
structural genomics consortium; HET: SEP PTR IRB; 2.28A
{Homo sapiens} PDB: 3k2l_A*
Length = 429
Score = 28.9 bits (65), Expect = 2.1
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 91 LVLSLLGPSLQDLFELCGFR-FSLKTVLMIAQQLVK 125
+ LL +L +L + F+ FSL V A +++
Sbjct: 176 MTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQ 211
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like,
phosphoprotein, protein transport, endocytosis; 1.70A
{Saccharomyces cerevisiae} PDB: 3ggz_A
Length = 193
Score = 27.7 bits (61), Expect = 4.5
Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 126 FPFSYSFTSFLKTSLKTKKKRRFLIEG--TVTAKQSRRD--DLEALGH 169
P FT LKT LK +R + AKQSRR L
Sbjct: 2 APSMIPFTIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNK 49
>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A
{Escherichia coli} SCOP: c.1.9.3
Length = 291
Score = 27.3 bits (60), Expect = 7.5
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 198 DTKRATPIEVLCEGHPEE---LSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDG 254
D KR + L + LS + L YD+L F + G
Sbjct: 218 DEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGYDYLLTTFIPQLRQSG-FSQA 276
Query: 255 EFD 257
+ D
Sbjct: 277 DVD 279
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein,
oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB:
3u33_A*
Length = 541
Score = 27.4 bits (61), Expect = 7.8
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 208 LCEGHPEELSTYLRYVRRLDFFET-PDYDHLRRIFAE 243
L +P EL Y RRLD P + L +
Sbjct: 61 LANVNPPELLRYDAQGRRLDDVRFHPAWHLLMQALCT 97
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 27.1 bits (60), Expect = 8.8
Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 20/116 (17%)
Query: 192 RYQKI---GDTKRATPIEVLCEGHPEELSTYLRYV---RRLDFFETPDYD--HLRRIFAE 243
RYQ D ++++C T+ + R+ + D H +
Sbjct: 74 RYQTPAVKSDHTGREIVDLMCHA------TFTTRLLSSTRVPNYNLIVMDEAHFTDPCSV 127
Query: 244 LFERRGYVDDGEFDWTGRAMVVSSTNGELGTDDPTAGHSNTPITAQQEVEIVDETK 299
RGY+ A+ +++T G+ DP SN+PI E EI + +
Sbjct: 128 AA--RGYISTRVEMGEAAAIFMTATP--PGSTDPFPQ-SNSPI-EDIEREIPERSW 177
>3t2c_A Fructose-1,6-bisphosphate aldolase/phosphatase; (beta/alpha)8 TIM
barrel, FBP, F6P, DHAP, GAP, phosphorylati lyase,
hydrolase; HET: 13P; 1.30A {Thermoproteus neutrophilus}
PDB: 3t2b_A* 3t2d_A* 3t2e_A* 3t2f_A 3t2g_A*
Length = 407
Score = 26.9 bits (59), Expect = 9.1
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 166 ALGHMFMYFLRGS-----LPWQGLKADTLKERYQKIGDTKRATPIEVLCEGHPEELSTYL 220
A H+ ++RGS +P + + D + T+ P +V G
Sbjct: 256 AHPHLVHGWMRGSHAGPLMPARFISVDPERRIAIGPKMTRFDGPPKVGALGFQLHEG--- 312
Query: 221 RYVRRLDFFETPDYDHLRRIFAEL 244
+D F+ P +D++R+ A++
Sbjct: 313 YLEGGVDLFDDPAFDYVRQTAAQI 336
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.422
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,014,106
Number of extensions: 302993
Number of successful extensions: 758
Number of sequences better than 10.0: 1
Number of HSP's gapped: 739
Number of HSP's successfully gapped: 38
Length of query: 314
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 221
Effective length of database: 4,105,140
Effective search space: 907235940
Effective search space used: 907235940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)