RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11491
(314 letters)
>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 293
Score = 106 bits (266), Expect = 1e-27
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 157 KQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCEGHPEEL 216
+QSRRDDLEALGH+FMYFLRGSLPWQGLKA T K++Y++IG+ K++TP+ LC G PEE
Sbjct: 189 EQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEF 248
Query: 217 STYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDWT 259
Y+ Y R L F TPDYD+L+ +F+++ ER +D FDW
Sbjct: 249 YKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTEDENFDWN 291
>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 84.5 bits (208), Expect = 2e-19
Identities = 57/103 (55%), Positives = 78/103 (75%)
Query: 157 KQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCEGHPEEL 216
+QSRRDDLE+LG++ MYF GSLPWQGLKA T +++Y++I + K +TPIEVLC+G+P E
Sbjct: 189 EQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEF 248
Query: 217 STYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDWT 259
+TYL + R L F + PDY +LR++F LF R+G+ D FDW
Sbjct: 249 ATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWN 291
>d1w36b3 c.52.1.24 (B:899-1174) Exodeoxyribonuclease V beta chain
(RecB), C-terminal domain {Escherichia coli [TaxId:
562]}
Length = 276
Score = 28.5 bits (63), Expect = 0.88
Identities = 45/251 (17%), Positives = 79/251 (31%), Gaps = 35/251 (13%)
Query: 26 DWLRALSF--LPSALCGVSTHIVDRLSIDASSSSSADDPP---PHGFPRVYFFG----KV 76
+W S+ L G++ ++ RL +DA+ +S + P PH FPR G +
Sbjct: 2 NWRVT-SYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSL 60
Query: 77 MDKTD--KPS--------------GGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIA 120
+ D +P ++ ++ + LQ G S L
Sbjct: 61 FEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQ---LSAR 117
Query: 121 QQLVKFPFSYSFTSFLKTSLKTKKKRRFLIEGTVTAKQSRRDDLEAL-GHMFMYFLRGSL 179
+ V+ F + L S R+F L G + + F
Sbjct: 118 NKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGR 177
Query: 180 PW-QGLKADTLKERYQKIGDTKRATPIEVLCEGHPEELSTYLRYVRRLDFFETPDYDHLR 238
+ K++ L E T++A + + + Y + R DYD+
Sbjct: 178 YYLLDYKSNWLGEDSS--AYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEH 235
Query: 239 RI--FAELFER 247
LF R
Sbjct: 236 HFGGVIYLFLR 246
>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic
domain {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 277
Score = 27.8 bits (61), Expect = 1.6
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 155 TAKQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCEGHPE 214
R D+ +LG + L G P+ G D+ + P EG
Sbjct: 188 GDSVDARSDVYSLGCVLYEVLTGEPPFTG---DSPVSVAYQHVREDP-IPPSARHEGLSA 243
Query: 215 ELSTYLR 221
+L +
Sbjct: 244 DLDAVVL 250
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated
herpesvirus [TaxId: 37296]}
Length = 146
Score = 26.0 bits (57), Expect = 3.7
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 14/63 (22%)
Query: 203 TPIEVLCEG----HPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEFDW 258
+PI++ G L + F T D L ++ DG +W
Sbjct: 34 SPIKLYITGLMRDKESLFEAMLA---NVRFHSTTGIDQLGLSMLQVSG------DGNMNW 84
Query: 259 TGR 261
GR
Sbjct: 85 -GR 86
>d1ni5a4 d.229.1.1 (A:227-314) tRNA-Ile-lysidine synthetase, TilS,
substrate-binding domain {Escherichia coli [TaxId: 562]}
Length = 88
Score = 24.8 bits (54), Expect = 5.6
Identities = 10/60 (16%), Positives = 17/60 (28%)
Query: 189 LKERYQKIGDTKRATPIEVLCEGHPEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERR 248
L + + I + + +R P D L RI+ E+ R
Sbjct: 1 LADDLAHCQSPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAR 60
>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo
sapiens) [TaxId: 9606]}
Length = 320
Score = 26.2 bits (57), Expect = 6.0
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 13/91 (14%)
Query: 159 SRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATP----------IEVL 208
+ D + G + L G P+ G +E + I P + L
Sbjct: 181 NHSVDWWSFGVLLYEMLIGQSPFHG---QDEEELFHSIRMDNPFYPRWLEKEAKDLLVKL 237
Query: 209 CEGHPEELSTYLRYVRRLDFFETPDYDHLRR 239
PE+ +R+ F +++ L R
Sbjct: 238 FVREPEKRLGVRGDIRQHPLFREINWEELER 268
>d1k0da1 a.45.1.1 (A:201-351) Yeast prion protein ure2p, nitrogen
regulation fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 151
Score = 25.3 bits (54), Expect = 7.7
Identities = 3/35 (8%), Positives = 10/35 (28%)
Query: 216 LSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGY 250
+ V R+ ++ + + + R
Sbjct: 113 FVPWNNVVDRIGINIKIEFPEVYKWTKHMMRRPAV 147
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 24.7 bits (53), Expect = 9.1
Identities = 4/44 (9%), Positives = 10/44 (22%), Gaps = 1/44 (2%)
Query: 213 PEELSTYLRYVRRLDFFETPDYDHLRRIFAELFERRGYVDDGEF 256
++L + + R + L + G
Sbjct: 2 VDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFES-HAKGGTV 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.422
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,235,762
Number of extensions: 58985
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 14
Length of query: 314
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,240,546
Effective search space: 284085034
Effective search space used: 284085034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)