BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11494
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 29.3 bits (64), Expect = 1.5, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 128 RHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQR 186
R AV + + ++ H+ +F + +F+ D +PE+R + +A+ L V R
Sbjct: 191 RSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 249
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 29.3 bits (64), Expect = 1.5, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 128 RHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQR 186
R AV + + ++ H+ +F + +F+ D +PE+R + +A+ L V R
Sbjct: 191 RSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 249
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 29.3 bits (64), Expect = 1.5, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 128 RHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQR 186
R AV + + ++ H+ +F + +F+ D +PE+R + +A+ L V R
Sbjct: 191 RSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 249
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 28.5 bits (62), Expect = 2.6, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 128 RHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQR 186
R AV + + ++ H+ +F + +F+ D +PE+R + +A+ L V R
Sbjct: 191 RSHAVACVNQFIISRTQALXLHIDSFTENLFALAGDEEPEVRKNVCRALVXLLEVRMDR 249
>pdb|1XCB|A Chain A, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
pdb|1XCB|B Chain B, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
pdb|1XCB|C Chain C, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
pdb|1XCB|D Chain D, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
pdb|1XCB|E Chain E, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
pdb|1XCB|F Chain F, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
pdb|1XCB|G Chain G, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
Length = 211
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 69 RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKR 128
R YLR L GV R +++ +G+LAQ++ F+++K + + G G
Sbjct: 10 RLITYLRILEELEAQGVHRTSSEQLGELAQVTA--------FQVRKDLSYFGSYGTRGVG 61
Query: 129 HAAVLVLKEL 138
+ ++ +EL
Sbjct: 62 YTVPVLKREL 71
>pdb|3IKV|A Chain A, Crystal Structure Of A Rex-Family Repressor R90d Mutant
From Aquaticus
pdb|3IKV|B Chain B, Crystal Structure Of A Rex-Family Repressor R90d Mutant
From Aquaticus
Length = 207
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 69 RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKR 128
R YLR L GV R +++ +G+LAQ++ F+++K + + G G
Sbjct: 11 RLITYLRILEELEAQGVHRTSSEQLGELAQVTA--------FQVRKDLSYFGSYGTRGVG 62
Query: 129 HAAVLVLKEL 138
+ ++ +EL
Sbjct: 63 YTVPVLKREL 72
>pdb|3IL2|A Chain A, Crystal Structure Of A Rex-Family Repressor R90d MutantDNA
COMPLEX From Thermus Aquaticus
pdb|3IL2|B Chain B, Crystal Structure Of A Rex-Family Repressor R90d MutantDNA
COMPLEX From Thermus Aquaticus
Length = 207
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 69 RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKR 128
R YLR L GV R +++ +G+LAQ++ F+++K + + G G
Sbjct: 11 RLITYLRILEELEAQGVHRTSSEQLGELAQVTA--------FQVRKDLSYFGSYGTRGVG 62
Query: 129 HAAVLVLKEL 138
+ ++ +EL
Sbjct: 63 YTVPVLKREL 72
>pdb|3IKT|A Chain A, Crystal Structure Of A Rex-Family RepressorDNANAD+ COMPLEX
Thermus Aquaticus
pdb|3IKT|B Chain B, Crystal Structure Of A Rex-Family RepressorDNANAD+ COMPLEX
Thermus Aquaticus
Length = 207
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 69 RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKR 128
R YLR L GV R +++ +G+LAQ++ F+++K + + G G
Sbjct: 11 RLITYLRILEELEAQGVHRTSSEQLGELAQVTA--------FQVRKDLSYFGSYGTRGVG 62
Query: 129 HAAVLVLKEL 138
+ ++ +EL
Sbjct: 63 YTVPVLKREL 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,900,371
Number of Sequences: 62578
Number of extensions: 176020
Number of successful extensions: 553
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 10
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)