Query psy11494
Match_columns 197
No_of_seqs 107 out of 175
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 19:50:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0891|consensus 100.0 6.9E-29 1.5E-33 258.4 16.2 189 5-197 28-217 (2341)
2 PF12755 Vac14_Fab1_bd: Vacuol 98.1 3.1E-05 6.7E-10 57.9 8.7 77 102-180 19-95 (97)
3 PF05004 IFRD: Interferon-rela 97.7 0.02 4.3E-07 50.9 21.1 184 2-187 60-263 (309)
4 KOG2171|consensus 97.6 0.0025 5.4E-08 64.6 16.1 170 7-179 330-502 (1075)
5 PF12348 CLASP_N: CLASP N term 97.5 0.015 3.2E-07 48.2 16.5 152 31-187 56-212 (228)
6 PF13513 HEAT_EZ: HEAT-like re 97.3 0.00037 8E-09 45.7 4.1 51 127-177 3-53 (55)
7 cd00020 ARM Armadillo/beta-cat 97.2 0.0022 4.8E-08 46.6 7.5 110 29-139 8-119 (120)
8 PF12348 CLASP_N: CLASP N term 97.1 0.02 4.2E-07 47.5 13.5 139 38-184 17-163 (228)
9 PF01602 Adaptin_N: Adaptin N 96.9 0.014 3.1E-07 53.7 12.1 138 28-179 42-179 (526)
10 PF08713 DNA_alkylation: DNA a 96.8 0.039 8.4E-07 45.2 12.8 151 2-180 31-183 (213)
11 KOG1967|consensus 96.8 0.021 4.6E-07 57.2 12.8 160 23-182 862-1025(1030)
12 PRK09687 putative lyase; Provi 96.8 0.037 8E-07 48.5 13.1 65 29-98 55-120 (280)
13 cd00020 ARM Armadillo/beta-cat 96.6 0.014 3E-07 42.4 7.8 107 72-179 10-118 (120)
14 KOG2171|consensus 96.4 0.069 1.5E-06 54.5 13.7 138 20-159 836-978 (1075)
15 PF10508 Proteasom_PSMB: Prote 96.4 0.14 3E-06 48.3 14.9 146 31-179 41-187 (503)
16 KOG1242|consensus 96.4 0.14 3E-06 49.3 14.7 179 7-187 113-330 (569)
17 PF08167 RIX1: rRNA processing 96.1 0.26 5.5E-06 39.8 13.1 133 23-158 20-161 (165)
18 PRK09687 putative lyase; Provi 95.9 0.2 4.3E-06 43.9 12.6 68 23-100 17-85 (280)
19 KOG0212|consensus 95.9 0.11 2.4E-06 50.1 11.6 139 44-188 16-161 (675)
20 PF10508 Proteasom_PSMB: Prote 95.9 0.36 7.9E-06 45.6 15.1 153 26-179 75-229 (503)
21 KOG0212|consensus 95.9 0.29 6.3E-06 47.2 14.1 175 11-186 25-242 (675)
22 PF12755 Vac14_Fab1_bd: Vacuol 95.8 0.05 1.1E-06 40.6 7.2 59 126-184 1-59 (97)
23 PF02985 HEAT: HEAT repeat; I 95.5 0.031 6.6E-07 32.8 4.1 29 153-181 1-29 (31)
24 PF13646 HEAT_2: HEAT repeats; 95.0 0.18 3.9E-06 35.1 7.6 83 74-177 4-88 (88)
25 PTZ00429 beta-adaptin; Provisi 95.0 0.64 1.4E-05 46.3 13.9 136 32-180 72-207 (746)
26 cd06561 AlkD_like A new struct 94.8 1.7 3.6E-05 35.0 16.1 150 3-182 21-171 (197)
27 PF01602 Adaptin_N: Adaptin N 94.7 1.6 3.4E-05 40.3 15.0 130 37-177 88-217 (526)
28 PF12717 Cnd1: non-SMC mitotic 94.7 0.37 8.1E-06 39.0 9.7 92 82-181 1-92 (178)
29 KOG4653|consensus 94.5 0.88 1.9E-05 45.9 13.3 147 29-181 769-918 (982)
30 PF12765 Cohesin_HEAT: HEAT re 94.2 0.08 1.7E-06 33.5 3.7 40 135-176 3-42 (42)
31 KOG1943|consensus 94.1 2.4 5.2E-05 43.7 15.4 162 17-180 330-499 (1133)
32 KOG1820|consensus 94.0 1.4 3E-05 44.4 13.6 148 30-184 255-403 (815)
33 PF12460 MMS19_C: RNAPII trans 93.9 5.1 0.00011 36.7 16.8 112 67-181 269-394 (415)
34 KOG0915|consensus 93.7 1.7 3.6E-05 46.3 13.9 144 33-184 961-1113(1702)
35 PF12231 Rif1_N: Rap1-interact 93.6 3.2 7E-05 37.7 14.4 120 64-183 34-206 (372)
36 KOG0392|consensus 93.5 1.6 3.6E-05 45.7 13.2 107 73-182 820-926 (1549)
37 KOG1242|consensus 93.4 2.1 4.5E-05 41.4 13.2 158 13-184 280-447 (569)
38 smart00638 LPD_N Lipoprotein N 93.0 1.4 3E-05 41.8 11.4 136 31-179 396-543 (574)
39 PF13513 HEAT_EZ: HEAT-like re 92.9 0.18 3.9E-06 32.7 3.8 52 45-96 4-55 (55)
40 PF12717 Cnd1: non-SMC mitotic 92.8 3.4 7.3E-05 33.4 12.0 132 45-184 5-139 (178)
41 PF13646 HEAT_2: HEAT repeats; 92.6 0.38 8.1E-06 33.4 5.5 56 113-178 2-57 (88)
42 PF13251 DUF4042: Domain of un 92.6 0.21 4.5E-06 41.5 4.7 55 128-182 3-70 (182)
43 KOG0166|consensus 92.3 1.2 2.5E-05 42.7 9.7 105 75-180 158-265 (514)
44 KOG1248|consensus 92.0 15 0.00032 38.4 17.7 109 68-177 781-894 (1176)
45 KOG1851|consensus 91.7 4.5 9.8E-05 43.3 13.8 102 74-178 1574-1675(1710)
46 PLN03200 cellulose synthase-in 91.7 3.4 7.4E-05 45.6 13.4 152 33-185 569-727 (2102)
47 PF01347 Vitellogenin_N: Lipop 91.6 1.2 2.6E-05 42.4 9.2 148 15-179 407-587 (618)
48 PF08064 UME: UME (NUC010) dom 91.3 3.4 7.3E-05 31.1 9.7 76 22-99 9-84 (107)
49 PLN03200 cellulose synthase-in 91.2 3.4 7.3E-05 45.6 12.7 158 32-197 655-823 (2102)
50 PRK13800 putative oxidoreducta 90.9 4.1 8.8E-05 41.3 12.5 57 31-97 624-680 (897)
51 PRK13800 putative oxidoreducta 89.6 4.6 0.0001 40.9 11.7 56 33-96 747-802 (897)
52 COG5181 HSH155 U2 snRNP splice 89.5 1.4 3.1E-05 43.3 7.6 98 80-184 292-390 (975)
53 COG5181 HSH155 U2 snRNP splice 89.2 5.9 0.00013 39.2 11.4 38 147-184 599-636 (975)
54 KOG0213|consensus 88.9 29 0.00063 35.3 16.8 105 85-193 736-840 (1172)
55 KOG1241|consensus 88.7 20 0.00044 36.1 14.9 171 9-183 578-765 (859)
56 PF08167 RIX1: rRNA processing 88.5 4.7 0.0001 32.4 9.0 84 104-188 19-104 (165)
57 KOG0414|consensus 88.2 5.9 0.00013 41.4 11.2 109 64-180 914-1026(1251)
58 PF11919 DUF3437: Domain of un 88.1 0.92 2E-05 33.5 4.2 54 125-179 3-56 (90)
59 PF11864 DUF3384: Domain of un 87.7 24 0.00052 32.9 14.9 157 28-197 176-342 (464)
60 smart00802 UME Domain in UVSB 87.5 7.4 0.00016 29.5 9.0 84 27-115 14-97 (107)
61 PF03224 V-ATPase_H_N: V-ATPas 87.4 4.5 9.6E-05 35.6 8.9 74 70-144 107-183 (312)
62 KOG1241|consensus 87.3 28 0.00061 35.1 14.9 173 7-184 18-206 (859)
63 KOG1943|consensus 86.4 7.2 0.00016 40.4 10.6 109 63-174 335-450 (1133)
64 KOG0915|consensus 86.1 11 0.00025 40.4 12.1 130 27-164 1234-1368(1702)
65 PTZ00429 beta-adaptin; Provisi 85.9 41 0.00089 33.8 18.5 103 46-153 234-339 (746)
66 KOG1824|consensus 85.3 29 0.00063 36.0 14.1 147 20-179 726-884 (1233)
67 KOG1820|consensus 84.7 6.8 0.00015 39.6 9.5 115 67-181 251-365 (815)
68 PF03224 V-ATPase_H_N: V-ATPas 83.9 8.4 0.00018 33.8 8.9 151 29-180 106-268 (312)
69 PF00514 Arm: Armadillo/beta-c 83.8 1.6 3.4E-05 26.6 3.1 25 74-98 17-41 (41)
70 KOG0213|consensus 83.7 7.7 0.00017 39.2 9.2 63 121-183 522-584 (1172)
71 KOG2023|consensus 82.6 22 0.00047 35.6 11.7 155 5-163 151-310 (885)
72 COG5215 KAP95 Karyopherin (imp 81.3 18 0.0004 35.6 10.5 122 33-154 602-725 (858)
73 KOG2160|consensus 81.1 43 0.00092 30.6 12.4 146 33-181 87-240 (342)
74 PF11701 UNC45-central: Myosin 80.8 6.2 0.00013 31.5 6.3 106 25-135 40-154 (157)
75 KOG2956|consensus 80.7 55 0.0012 31.4 13.6 136 41-179 300-475 (516)
76 KOG0392|consensus 80.6 21 0.00046 37.9 11.3 155 22-185 75-241 (1549)
77 cd03562 CID CID (CTD-Interacti 80.2 13 0.00029 27.5 7.6 73 24-96 33-106 (114)
78 COG5215 KAP95 Karyopherin (imp 79.7 68 0.0015 31.8 16.4 168 11-183 26-209 (858)
79 KOG2933|consensus 79.2 14 0.00029 33.6 8.4 143 30-183 90-236 (334)
80 cd03572 ENTH_epsin_related ENT 78.8 18 0.0004 28.1 8.2 38 64-101 33-70 (122)
81 PF04826 Arm_2: Armadillo-like 78.6 32 0.0007 29.8 10.5 75 40-117 107-181 (254)
82 KOG1824|consensus 77.9 26 0.00055 36.4 10.7 152 26-179 855-1034(1233)
83 PF02985 HEAT: HEAT repeat; I 77.7 4 8.6E-05 23.5 3.2 28 72-99 3-30 (31)
84 PF12333 Ipi1_N: Rix1 complex 77.5 4.9 0.00011 29.9 4.5 40 143-182 2-41 (102)
85 PF06685 DUF1186: Protein of u 77.4 40 0.00086 29.4 10.7 102 9-117 88-195 (249)
86 KOG1248|consensus 76.3 1.1E+02 0.0024 32.4 16.6 146 33-179 658-812 (1176)
87 KOG2259|consensus 76.1 16 0.00034 36.5 8.5 87 83-179 387-473 (823)
88 PF08767 CRM1_C: CRM1 C termin 74.9 61 0.0013 28.8 13.8 106 80-185 87-198 (319)
89 PF13251 DUF4042: Domain of un 73.8 50 0.0011 27.3 12.5 131 45-182 3-175 (182)
90 KOG1243|consensus 73.7 55 0.0012 32.6 11.5 166 11-186 316-520 (690)
91 KOG4500|consensus 73.4 71 0.0015 30.7 11.8 73 68-141 314-391 (604)
92 KOG2032|consensus 73.3 71 0.0015 30.8 11.8 150 30-186 183-334 (533)
93 KOG2956|consensus 73.2 30 0.00066 33.0 9.4 69 106-174 325-393 (516)
94 KOG1062|consensus 73.0 13 0.00029 37.5 7.3 80 73-179 297-377 (866)
95 TIGR02270 conserved hypothetic 72.1 37 0.0008 31.6 9.7 55 31-95 89-143 (410)
96 COG1413 FOG: HEAT repeat [Ener 71.9 66 0.0014 27.9 12.4 61 29-99 44-104 (335)
97 PF12830 Nipped-B_C: Sister ch 71.9 36 0.00077 27.8 8.7 81 66-151 5-85 (187)
98 KOG2023|consensus 71.8 82 0.0018 31.7 12.2 132 47-179 722-855 (885)
99 KOG1240|consensus 71.3 8.5 0.00018 40.5 5.7 64 123-188 435-498 (1431)
100 KOG4413|consensus 71.2 65 0.0014 30.0 10.7 88 30-119 257-352 (524)
101 PF10274 ParcG: Parkin co-regu 71.2 34 0.00075 28.5 8.4 69 110-179 38-107 (183)
102 KOG2549|consensus 68.3 1.2E+02 0.0027 29.5 14.0 132 29-165 208-352 (576)
103 PF12460 MMS19_C: RNAPII trans 67.9 47 0.001 30.4 9.5 96 22-117 317-413 (415)
104 smart00185 ARM Armadillo/beta- 67.9 7.5 0.00016 22.7 2.9 24 74-97 17-40 (41)
105 KOG3678|consensus 67.7 31 0.00067 33.4 8.2 57 81-140 276-336 (832)
106 KOG0166|consensus 66.8 53 0.0011 31.7 9.7 154 26-180 235-392 (514)
107 PF12719 Cnd3: Nuclear condens 65.9 90 0.002 27.1 11.4 108 68-180 26-142 (298)
108 KOG2025|consensus 65.7 1.6E+02 0.0035 29.9 15.6 150 21-176 37-188 (892)
109 KOG1059|consensus 63.6 1.8E+02 0.0038 29.7 14.4 143 28-179 144-363 (877)
110 KOG4224|consensus 63.6 22 0.00048 33.3 6.3 146 31-178 295-443 (550)
111 PF04826 Arm_2: Armadillo-like 62.9 1E+02 0.0022 26.7 13.1 138 31-176 15-158 (254)
112 TIGR02270 conserved hypothetic 62.7 87 0.0019 29.1 10.2 27 72-98 89-115 (410)
113 KOG1077|consensus 62.5 98 0.0021 31.4 10.7 133 33-177 79-212 (938)
114 PF14222 MOR2-PAG1_N: Cell mor 62.2 1.6E+02 0.0034 28.6 13.6 159 15-181 72-249 (552)
115 COG5096 Vesicle coat complex, 62.1 1.2E+02 0.0026 30.7 11.5 55 122-182 103-157 (757)
116 COG5240 SEC21 Vesicle coat com 62.0 64 0.0014 32.1 9.2 113 33-149 228-341 (898)
117 KOG1822|consensus 61.7 2.8E+02 0.006 31.3 15.5 167 19-191 906-1133(2067)
118 KOG4653|consensus 60.6 2.1E+02 0.0046 29.6 15.0 152 30-188 729-883 (982)
119 PF10521 DUF2454: Protein of u 60.3 1.2E+02 0.0025 26.4 15.3 151 15-165 106-278 (282)
120 PF04388 Hamartin: Hamartin pr 57.3 2.1E+02 0.0045 28.4 12.7 102 49-156 54-156 (668)
121 PF05004 IFRD: Interferon-rela 56.7 1.4E+02 0.0031 26.4 13.4 134 20-153 121-274 (309)
122 KOG0889|consensus 55.2 52 0.0011 38.5 8.3 122 25-183 1030-1157(3550)
123 PF12054 DUF3535: Domain of un 55.2 44 0.00096 31.3 6.9 74 87-164 105-180 (441)
124 PF11724 YvbH_ext: YvbH-like o 54.4 6.6 0.00014 27.1 1.0 39 85-124 6-44 (61)
125 KOG2160|consensus 53.7 1.8E+02 0.0039 26.6 10.5 112 29-142 167-288 (342)
126 PF11698 V-ATPase_H_C: V-ATPas 53.3 64 0.0014 25.0 6.5 110 21-180 5-114 (119)
127 PF10274 ParcG: Parkin co-regu 52.7 45 0.00097 27.8 5.9 66 45-110 55-121 (183)
128 PF05536 Neurochondrin: Neuroc 52.1 2.2E+02 0.0047 27.5 11.2 101 82-182 152-262 (543)
129 KOG2025|consensus 51.9 1.7E+02 0.0037 29.7 10.4 108 69-179 41-153 (892)
130 KOG1790|consensus 49.6 51 0.0011 25.7 5.3 64 79-143 55-119 (121)
131 PF04388 Hamartin: Hamartin pr 49.3 1.3E+02 0.0027 29.9 9.3 109 76-184 11-143 (668)
132 KOG0211|consensus 48.7 3.1E+02 0.0066 27.9 14.9 134 45-185 496-629 (759)
133 KOG4224|consensus 48.4 2.4E+02 0.0053 26.7 11.3 153 29-190 252-410 (550)
134 KOG1059|consensus 47.9 1.3E+02 0.0027 30.6 8.9 30 127-156 197-226 (877)
135 KOG1060|consensus 47.9 1.5E+02 0.0033 30.4 9.5 168 7-183 182-423 (968)
136 PF08064 UME: UME (NUC010) dom 47.9 1.1E+02 0.0025 22.7 7.4 67 116-184 20-86 (107)
137 KOG1078|consensus 46.4 1.1E+02 0.0025 31.1 8.4 76 66-149 242-320 (865)
138 smart00582 RPR domain present 45.9 1.2E+02 0.0026 22.4 7.9 85 25-110 29-118 (121)
139 PF10363 DUF2435: Protein of u 45.5 1.2E+02 0.0026 22.2 8.5 69 111-181 4-72 (92)
140 PF09808 SNAPc_SNAP43: Small n 45.0 1.5E+02 0.0033 24.3 7.9 75 20-98 44-126 (194)
141 PF08569 Mo25: Mo25-like; Int 44.1 2.5E+02 0.0053 25.4 11.7 109 73-181 80-193 (335)
142 COG5330 Uncharacterized protei 43.6 1E+02 0.0023 28.4 7.2 69 111-181 8-76 (364)
143 PF10363 DUF2435: Protein of u 43.3 1.3E+02 0.0028 22.0 9.4 70 29-99 4-73 (92)
144 cd03569 VHS_Hrs_Vps27p VHS dom 43.2 1.6E+02 0.0035 23.1 8.3 77 31-111 7-84 (142)
145 PF08389 Xpo1: Exportin 1-like 42.3 1.4E+02 0.003 22.1 7.2 24 151-176 125-148 (148)
146 PF01347 Vitellogenin_N: Lipop 42.3 1.5E+02 0.0032 28.2 8.5 50 121-177 500-549 (618)
147 KOG4535|consensus 42.1 3.5E+02 0.0075 26.6 15.2 181 6-189 77-332 (728)
148 KOG1991|consensus 41.7 4.4E+02 0.0095 27.7 15.4 167 7-184 393-572 (1010)
149 KOG1078|consensus 41.5 4.1E+02 0.0089 27.3 12.2 127 39-180 403-531 (865)
150 KOG2759|consensus 41.5 2.1E+02 0.0045 27.1 8.9 130 52-181 243-438 (442)
151 KOG1992|consensus 40.7 2E+02 0.0043 29.7 9.1 121 18-155 278-410 (960)
152 KOG1077|consensus 40.4 4.2E+02 0.0092 27.1 12.8 113 51-173 313-425 (938)
153 PF08415 NRPS: Nonribosomal pe 39.6 17 0.00037 24.1 1.2 15 127-141 2-16 (58)
154 PF14852 Fis1_TPR_N: Fis1 N-te 39.0 43 0.00094 20.3 2.8 27 31-57 6-32 (35)
155 KOG4427|consensus 37.6 1.8E+02 0.0039 29.9 8.2 92 99-190 522-638 (1096)
156 KOG1967|consensus 37.4 4.4E+02 0.0096 27.6 11.0 96 82-181 884-982 (1030)
157 COG5240 SEC21 Vesicle coat com 37.2 4.5E+02 0.0097 26.5 14.3 89 82-178 461-552 (898)
158 cd03561 VHS VHS domain family; 37.1 1.9E+02 0.0041 22.1 11.7 76 32-111 4-80 (133)
159 KOG2274|consensus 35.5 3.9E+02 0.0084 27.9 10.3 141 19-162 119-281 (1005)
160 cd08050 TAF6 TATA Binding Prot 34.5 3.4E+02 0.0075 24.4 12.8 149 21-178 175-337 (343)
161 PF14500 MMS19_N: Dos2-interac 34.4 3.1E+02 0.0067 23.8 11.6 132 34-168 5-142 (262)
162 KOG1851|consensus 33.8 3.5E+02 0.0075 29.9 10.0 96 82-180 1499-1597(1710)
163 smart00802 UME Domain in UVSB 33.8 2.1E+02 0.0045 21.6 7.8 64 120-185 24-87 (107)
164 KOG1060|consensus 33.3 5.7E+02 0.012 26.5 11.5 134 30-182 37-173 (968)
165 smart00638 LPD_N Lipoprotein N 33.2 4.2E+02 0.0092 25.0 13.0 42 131-177 463-505 (574)
166 COG1291 MotA Flagellar motor c 32.9 2E+02 0.0044 25.4 7.1 84 25-145 74-157 (266)
167 PF05321 HHA: Haemolysin expre 32.6 1.6E+02 0.0035 20.0 5.1 37 3-39 9-45 (57)
168 KOG1789|consensus 32.5 1.3E+02 0.0028 32.4 6.5 85 82-167 2100-2193(2235)
169 PRK08378 hypothetical protein; 32.2 2.1E+02 0.0046 21.2 6.4 31 145-175 33-63 (93)
170 KOG1566|consensus 31.9 4.1E+02 0.0088 24.4 9.1 93 83-175 180-280 (342)
171 smart00288 VHS Domain present 31.5 2.4E+02 0.0052 21.6 10.6 80 33-116 5-85 (133)
172 PF05536 Neurochondrin: Neuroc 30.4 1E+02 0.0022 29.7 5.2 53 111-164 6-65 (543)
173 smart00427 H2B Histone H2B. 28.4 1.7E+02 0.0037 21.6 5.0 69 69-144 2-78 (89)
174 COG1458 Predicted DNA-binding 28.4 62 0.0013 27.6 3.0 37 141-177 91-128 (221)
175 PRK14101 bifunctional glucokin 28.3 1.6E+02 0.0035 28.6 6.3 128 21-149 248-394 (638)
176 cd03561 VHS VHS domain family; 27.7 2.8E+02 0.006 21.1 8.3 57 123-179 49-110 (133)
177 PF04510 DUF577: Family of unk 27.6 3.6E+02 0.0077 22.4 8.9 108 71-187 5-123 (174)
178 KOG4500|consensus 27.2 3.2E+02 0.007 26.4 7.7 72 29-100 316-392 (604)
179 PF06371 Drf_GBD: Diaphanous G 27.2 2E+02 0.0043 22.6 5.7 58 40-97 128-186 (187)
180 KOG3961|consensus 26.7 1.3E+02 0.0028 26.2 4.7 66 45-110 131-196 (262)
181 PF13022 HTH_Tnp_1_2: Helix-tu 26.6 1.7E+02 0.0036 23.6 5.0 44 12-60 63-106 (142)
182 PF11841 DUF3361: Domain of un 26.4 3.6E+02 0.0077 22.0 9.9 110 31-144 14-135 (160)
183 PF12231 Rif1_N: Rap1-interact 25.5 5E+02 0.011 23.4 9.3 75 24-98 228-303 (372)
184 PF14961 BROMI: Broad-minded p 25.5 2E+02 0.0044 30.8 6.6 72 107-181 158-231 (1296)
185 PF10256 Erf4: Golgin subfamil 25.4 2E+02 0.0043 21.4 5.1 40 15-54 28-67 (118)
186 PF08146 BP28CT: BP28CT (NUC21 25.3 3.2E+02 0.007 21.6 6.6 71 111-181 60-147 (153)
187 cd03567 VHS_GGA VHS domain fam 24.9 3.4E+02 0.0074 21.3 7.7 75 33-111 6-81 (139)
188 cd07064 AlkD_like_1 A new stru 24.9 4E+02 0.0086 22.0 15.3 131 28-179 46-177 (208)
189 PF14675 FANCI_S1: FANCI solen 24.7 3.6E+02 0.0078 23.0 7.1 101 70-172 8-118 (223)
190 smart00668 CTLH C-terminal to 24.7 57 0.0012 20.6 1.8 42 105-157 10-51 (58)
191 COG5234 CIN1 Beta-tubulin fold 24.5 2.3E+02 0.0051 28.9 6.5 55 125-180 358-415 (993)
192 cd07356 HN_L-whirlin_R1_like F 24.4 1.5E+02 0.0032 21.5 3.9 61 7-85 9-71 (78)
193 cd00256 VATPase_H VATPase_H, r 24.4 6E+02 0.013 23.9 14.6 175 7-182 71-259 (429)
194 COG0255 RpmC Ribosomal protein 24.3 1.3E+02 0.0028 21.2 3.6 26 12-37 6-31 (69)
195 KOG0185|consensus 24.2 1.1E+02 0.0025 26.6 3.9 38 151-190 181-218 (256)
196 PF04136 Sec34: Sec34-like fam 24.2 2.8E+02 0.0061 22.1 6.1 69 95-165 84-157 (157)
197 PF09088 MIF4G_like: MIF4G lik 23.9 3E+02 0.0065 23.0 6.4 48 133-180 94-141 (191)
198 KOG1062|consensus 23.4 8.3E+02 0.018 25.2 10.8 147 34-185 76-281 (866)
199 PF14228 MOR2-PAG1_mid: Cell m 23.2 1.9E+02 0.0041 30.7 5.9 59 127-185 932-990 (1120)
200 PF08321 PPP5: PPP5 TPR repeat 22.9 1.5E+02 0.0032 21.9 3.9 43 100-146 49-93 (95)
201 KOG0567|consensus 22.8 5.6E+02 0.012 22.9 10.6 24 157-180 256-279 (289)
202 PF08264 Anticodon_1: Anticodo 22.5 1.5E+02 0.0032 22.4 4.0 49 110-159 42-90 (153)
203 KOG2149|consensus 21.9 4.1E+02 0.0088 24.9 7.3 97 81-181 70-170 (393)
204 KOG4844|consensus 21.8 1E+02 0.0022 23.1 2.8 31 83-113 9-40 (102)
205 KOG1822|consensus 21.8 1.2E+03 0.027 26.6 15.0 170 8-181 31-206 (2067)
206 PF13243 Prenyltrans_1: Prenyl 21.7 2.6E+02 0.0057 19.7 5.1 68 50-121 31-104 (109)
207 PF10607 CLTH: CTLH/CRA C-term 21.7 65 0.0014 24.5 1.9 19 105-123 10-28 (145)
208 smart00126 IL6 Interleukin-6 h 21.6 1.8E+02 0.0039 23.6 4.4 69 70-139 69-143 (154)
209 PRK09103 ribonucleotide-diphos 21.3 6.5E+02 0.014 25.5 9.1 61 83-145 33-93 (758)
210 PRK15376 pathogenicity island 21.3 7.8E+02 0.017 24.1 10.2 82 10-98 24-114 (670)
211 cd03568 VHS_STAM VHS domain fa 21.3 4.1E+02 0.0089 20.8 7.7 66 113-178 36-107 (144)
212 KOG1061|consensus 21.1 2.2E+02 0.0048 28.7 5.7 104 52-165 336-439 (734)
213 COG5460 Uncharacterized conser 20.9 3E+02 0.0064 20.0 4.9 49 124-182 28-76 (82)
214 PF12830 Nipped-B_C: Sister ch 20.6 4.6E+02 0.01 21.2 12.9 86 30-120 10-96 (187)
215 PF08623 TIP120: TATA-binding 20.5 4.8E+02 0.01 21.3 7.5 99 83-185 41-144 (169)
216 PF14203 DUF4319: Domain of un 20.5 2E+02 0.0043 19.9 3.9 33 67-99 18-51 (64)
217 KOG2274|consensus 20.2 1E+03 0.022 25.0 15.3 111 64-177 444-555 (1005)
218 PF07539 DRIM: Down-regulated 20.1 4.4E+02 0.0094 20.7 9.1 47 26-79 15-61 (141)
219 PF07814 WAPL: Wings apart-lik 20.0 3.3E+02 0.0072 24.6 6.4 56 110-168 21-79 (361)
No 1
>KOG0891|consensus
Probab=99.96 E-value=6.9e-29 Score=258.39 Aligned_cols=189 Identities=51% Similarity=0.763 Sum_probs=179.4
Q ss_pred hHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCC-CcchhhhHHHHHHHhhhCCCCCh
Q psy11494 5 TGASMVRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDV-GNVNSRNIRFANYLRNLLPSNDI 83 (197)
Q Consensus 5 ~~~~~v~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~-~~~~~~~~rf~~yL~~~l~~~D~ 83 (197)
.+.+||.+++||++.+.+.+|.+.+|++||+|.+..++|+++|||.+++.++.+.+ ....+..+|++|||+.++|++|.
T Consensus 28 e~~~~~~~~~~~~~~~~~~~f~~~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~s~~~n~l~~l~~~~~~ 107 (2341)
T KOG0891|consen 28 ELFNYVTSELRELSAEESARFSNDLNHNIFELVHCLDSNERIGGILAIALLISFEGTEHDRKNISRLANYLRYLLPSNDV 107 (2341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhHHHHHHHHHhhhcccccchhHhHHHHHHHhhccCCh
Confidence 46789999999999999999999999999999999999999999999999998873 22566689999999999999999
Q ss_pred hHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcC
Q psy11494 84 GVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRD 163 (197)
Q Consensus 84 ~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrD 163 (197)
.+|..|++++|+++.+|++.++|+|++++|+++||+ +++.+.+|++|++++++++.++|+++|++++.|+++||.+++|
T Consensus 108 ~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~-~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~ 186 (2341)
T KOG0891|consen 108 EVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWL-GERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRD 186 (2341)
T ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHh-hhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999 8899999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHhhcchhhhhcCCCC
Q psy11494 164 PKPEIRLHAVKAIRAALVVTAQRESAKQSQKPQW 197 (197)
Q Consensus 164 pk~~iRe~Aa~aL~~cL~ii~~Re~~~~~~~~~~ 197 (197)
|++.||..|+.|+++|+..+.+|+ + ..+++|
T Consensus 187 ~~~~i~~~a~~al~~~~~~~~~~~-~--~~~~~~ 217 (2341)
T KOG0891|consen 187 PKPAIRLQACSALHAVLSSLAQRE-A--KLKPQW 217 (2341)
T ss_pred CChhhhHHHHHHHHHHHhhhhhcc-c--hhhhHH
Confidence 999999999999999999999999 3 466666
No 2
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.07 E-value=3.1e-05 Score=57.93 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=67.0
Q ss_pred cchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 102 TFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 102 ~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
....++++.-++..+..+..+.... ||+|+--|..+++.++..+.+|++++|+.+|..+.||.+.||.+| +.|..+|
T Consensus 19 ~~~~~~l~~Il~pVL~~~~D~d~rV-Ry~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 19 KDISKYLDEILPPVLKCFDDQDSRV-RYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HhHHHHHHHHHHHHHHHcCCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 3378899999999999987655555 999999999999999999999999999999999999999999988 4444443
No 3
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.66 E-value=0.02 Score=50.93 Aligned_cols=184 Identities=14% Similarity=0.141 Sum_probs=129.2
Q ss_pred hhhhHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH-hhcC-CCcchhhhHHHHHHHhhhCC
Q psy11494 2 RIATGASMVRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCL-LHVD-VGNVNSRNIRFANYLRNLLP 79 (197)
Q Consensus 2 ~~~~~~~~v~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~L-i~~~-~~~~~~~~~rf~~yL~~~l~ 79 (197)
|.+.+..|+....+....+.......++.+.+...++++...|+.-+..++..| +.++ +.+....+..+...|++++.
T Consensus 60 Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~ 139 (309)
T PF05004_consen 60 REAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILT 139 (309)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHh
Confidence 778899999999999999999999999999999999877778888776666666 4554 33456667778889999987
Q ss_pred CC--ChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHh--hh----cCCCc---------chhhHHHHHHHHHHHhhC
Q psy11494 80 SN--DIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIE--WL----GGDRV---------EGKRHAAVLVLKELAVTV 142 (197)
Q Consensus 80 ~~--D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~Ale--wL----~~~r~---------e~rR~AAvLvLrELa~na 142 (197)
.+ .+.+-..++.+||-++-.||.-..++.+ .=.+++ |. .+++. ..=.-||+.---=|+...
T Consensus 140 d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~--~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~ 217 (309)
T PF05004_consen 140 DSSASPKARAACLEALAICTFVGGSDEEETEE--LMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTL 217 (309)
T ss_pred CCccchHHHHHHHHHHHHHHHhhcCChhHHHH--HHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcC
Confidence 43 3344345667999998887764443331 114555 54 23332 122333332222244455
Q ss_pred Cc-hhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhcc
Q psy11494 143 PT-IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRE 187 (197)
Q Consensus 143 Pt-~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~Re 187 (197)
|. -+..++...++.+=..|-.+...||-+|.+++.-++++....+
T Consensus 218 ~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~ 263 (309)
T PF05004_consen 218 PDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHE 263 (309)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 65 3556677788888889999999999999999999988887543
No 4
>KOG2171|consensus
Probab=97.62 E-value=0.0025 Score=64.57 Aligned_cols=170 Identities=12% Similarity=0.086 Sum_probs=120.8
Q ss_pred HHHHHHHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHH
Q psy11494 7 ASMVRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVM 86 (197)
Q Consensus 7 ~~~v~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm 86 (197)
..-+...+..++++. ..--+...+-.++.|++-.+|.+|++||..+-+--..--...+.+.-+.+-+.|..+++.|=
T Consensus 330 ~~~lDrlA~~L~g~~---v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr 406 (1075)
T KOG2171|consen 330 EQALDRLALHLGGKQ---VLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVR 406 (1075)
T ss_pred HHHHHHHHhcCChhh---ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHH
Confidence 345566677777764 12234567788999999999999999998887542212222344555555555666788999
Q ss_pred HHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhc--CCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHH-HHhhhcC
Q psy11494 87 RYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLG--GDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDF-VFSAVRD 163 (197)
Q Consensus 87 ~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~--~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~-Iw~aLrD 163 (197)
-.|..++|+++..=+.....+-...+-.++-.+- ....+..-|||+-++-=...+.++.+-||++.+++. .-..+-.
T Consensus 407 ~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~ 486 (1075)
T KOG2171|consen 407 YAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS 486 (1075)
T ss_pred HHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999886444444455555555554442 234467788888888777888899999999999995 5555555
Q ss_pred CcHHHHHHHHHHHHHH
Q psy11494 164 PKPEIRLHAVKAIRAA 179 (197)
Q Consensus 164 pk~~iRe~Aa~aL~~c 179 (197)
+++.|+|.++.|+..+
T Consensus 487 ~~~~v~e~vvtaIasv 502 (1075)
T KOG2171|consen 487 SKPYVQEQAVTAIASV 502 (1075)
T ss_pred CchhHHHHHHHHHHHH
Confidence 6999999999988754
No 5
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.47 E-value=0.015 Score=48.24 Aligned_cols=152 Identities=11% Similarity=0.052 Sum_probs=86.7
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHH
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADF 110 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ 110 (197)
..|...+++.-..=-..++..+..|...-+..-...+..+...|-..+..+-..+-..|..++-.++...+ +..+++
T Consensus 56 ~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~-- 132 (228)
T PF12348_consen 56 DAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKIL-- 132 (228)
T ss_dssp HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHH--
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHH--
Confidence 44444443322222345566666665443222222233333333344444455677888889999888643 223332
Q ss_pred HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCC---chhHhh--hhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhh
Q psy11494 111 EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVP---TIFYQH--VQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQ 185 (197)
Q Consensus 111 ev~~AlewL~~~r~e~rR~AAvLvLrELa~naP---t~~~~~--v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~ 185 (197)
...+.-...+++..-|..++..|..+....| ..+-.. ++.+.+.|=..+.||++.||+.|-.++....+..-.
T Consensus 133 --~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 133 --LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp --HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred --HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 2333334467778888888888888888877 333332 588999999999999999999999999998888777
Q ss_pred cc
Q psy11494 186 RE 187 (197)
Q Consensus 186 Re 187 (197)
|-
T Consensus 211 ~a 212 (228)
T PF12348_consen 211 RA 212 (228)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 6
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.31 E-value=0.00037 Score=45.74 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 127 KRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 127 rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
-|.+|+..|-+++...|..+-++++.+++.+-..|.|++..||..|+.||.
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 478899999999999999999999999999999999999999999999986
No 7
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.18 E-value=0.0022 Score=46.64 Aligned_cols=110 Identities=20% Similarity=0.105 Sum_probs=73.4
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhH-HHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNI-RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~-rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
+-+.+.++++.++..-+.+++.++..+...........+. .+...|..+|..+|..+...|.++++.|+..+......+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 4456778888888888999999999887542111111121 345556666677899999999999999998765544555
Q ss_pred HHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHH
Q psy11494 108 ADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELA 139 (197)
Q Consensus 108 Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa 139 (197)
++.. ++..++-|+.+ ...-|-.|+.+|..|+
T Consensus 88 ~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSS-NEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhh
Confidence 5543 55556666554 4444556666766654
No 8
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.12 E-value=0.02 Score=47.49 Aligned_cols=139 Identities=18% Similarity=0.216 Sum_probs=94.2
Q ss_pred hCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHh-------hhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHH
Q psy11494 38 SANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLR-------NLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADF 110 (197)
Q Consensus 38 ~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~-------~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ 110 (197)
.+.|=.++.-|+.-+..++... ........|..+|+ ..+.+.-..|++.|..+++.++...|.-...+++.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~--~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGN--APEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH---B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcC--CccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 5677788899999999998655 11222344555555 44555678899999999999999877777777777
Q ss_pred HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHH-HHHHHhhhcCCcHHHHHHHHHHHHHHHHHHh
Q psy11494 111 EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAF-FDFVFSAVRDPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 111 ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~-~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
-+..-++-+.. .+..-|-+|.-.|..+..++| +.+.+ +..+..+..++++.+|..++..+..++.-..
T Consensus 95 ~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 95 LLPPLLKKLGD-SKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHGGG----HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 77766666654 455678889999999999988 22344 7778889999999999999999999988777
No 9
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.92 E-value=0.014 Score=53.73 Aligned_cols=138 Identities=19% Similarity=0.215 Sum_probs=103.8
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 28 AFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 28 ~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
.....+..++.|+|..+|.=|-+++..+...+.+ ...=..|-+++=+.++|+.+.-.|=++++.+.. .+.
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~----~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~ 111 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE----LLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEM 111 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cch
Confidence 3456688888999999999999999888765522 355578888888999999999999999999873 344
Q ss_pred HHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 108 ADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 108 Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
++.-++.-..-|.. +...=|-+|++-+..+.+..|..+-.. +++.+-..|.|+.+.|+.+|..++..|
T Consensus 112 ~~~l~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 112 AEPLIPDVIKLLSD-PSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcC-CchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 44434444444444 444555566777778888889877554 678888888999999999999988877
No 10
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=96.84 E-value=0.039 Score=45.22 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=106.5
Q ss_pred hhhhHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCC-
Q psy11494 2 RIATGASMVRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPS- 80 (197)
Q Consensus 2 ~~~~~~~~v~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~- 80 (197)
|...++.......++.+.+ ++......+|.+++.-.+++-|+..++...... + .....++...++.
T Consensus 31 ~~p~lr~lak~~~~~~~~~------~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~--~-----~~~~~~~~~~~~~~ 97 (213)
T PF08713_consen 31 RTPDLRKLAKDIYKELKLS------EELYELADELWESGYREERYLALLILDKRRKKL--T-----EEDLELLEKWLPDI 97 (213)
T ss_dssp -HHHHHHHHHHHHHHHCTS------HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG---------HHHHHHHHHCCCCC
T ss_pred CcHHHHHHHHHHHhhcccc------hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhh--h-----HHHHHHHHHHhccC
Confidence 3445566666666665555 455566778888888888998888886655332 1 1255666777774
Q ss_pred CChhHHHHH-HHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHh
Q psy11494 81 NDIGVMRYA-AKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFS 159 (197)
Q Consensus 81 ~D~~vm~~A-A~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~ 159 (197)
++-.++... ++++|++.... +.-.....+|+.++....||.|-++.++- ... ...+.+++.+-.
T Consensus 98 ~~W~~~D~~~~~~~~~~~~~~--------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~-~~~------~~~~~~l~~~~~ 162 (213)
T PF08713_consen 98 DNWATCDSLCSKLLGPLLKKH--------PEALELLEKWAKSDNEWVRRAAIVMLLRY-IRK------EDFDELLEIIEA 162 (213)
T ss_dssp CCHHHHHHHTHHHHHHHHHHH--------GGHHHHHHHHHHCSSHHHHHHHHHCTTTH-GGG------CHHHHHHHHHHH
T ss_pred CcchhhhHHHHHHHHHHHHhh--------HHHHHHHHHHHhCCcHHHHHHHHHHHHHH-HHh------cCHHHHHHHHHH
Confidence 566666665 88888886532 23345678999999999999998887653 333 777899999999
Q ss_pred hhcCCcHHHHHHHHHHHHHHH
Q psy11494 160 AVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 160 aLrDpk~~iRe~Aa~aL~~cL 180 (197)
.+.|+...||.+.+-+|+.+.
T Consensus 163 ~~~d~~~~vq~ai~w~L~~~~ 183 (213)
T PF08713_consen 163 LLKDEEYYVQKAIGWALREIG 183 (213)
T ss_dssp CTTGS-HHHHHHHHHHHHHHC
T ss_pred HcCCchHHHHHHHHHHHHHHH
Confidence 999999999999988888654
No 11
>KOG1967|consensus
Probab=96.82 E-value=0.021 Score=57.21 Aligned_cols=160 Identities=16% Similarity=0.097 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhh-cCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccC
Q psy11494 23 TAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLH-VDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISG 101 (197)
Q Consensus 23 ~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~-~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG 101 (197)
+||+.++...+.+.+++.+..+|--=+.|+--.|. +...-....+..+-..|-.+|...|..|-.-+-.++--+..-.+
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 67888898888888885555555555666655553 22111222355566666677778899997778899988888899
Q ss_pred cchhhhHHHHHHHHHhhhcCCC--cchhhHHHHHHHHHHHhhCCc-hhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 102 TFSAEYADFEMKKAIEWLGGDR--VEGKRHAAVLVLKELAVTVPT-IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 102 ~~~~~~Ve~ev~~AlewL~~~r--~e~rR~AAvLvLrELa~naPt-~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
+++.+.+..-|.--+.-=.... .-.-|..|.--|--|.+..|+ ..++|.++++..|=..|-|||-.||+.|+.+=..
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 9999999998887665444333 256799999999999998777 9999999999999999999999999999987555
Q ss_pred HHHH
Q psy11494 179 ALVV 182 (197)
Q Consensus 179 cL~i 182 (197)
-..+
T Consensus 1022 W~~l 1025 (1030)
T KOG1967|consen 1022 WYML 1025 (1030)
T ss_pred hhhc
Confidence 4433
No 12
>PRK09687 putative lyase; Provisional
Probab=96.80 E-value=0.037 Score=48.50 Aligned_cols=65 Identities=20% Similarity=0.137 Sum_probs=45.6
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhh-CCCCChhHHHHHHHHHHHhhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNL-LPSNDIGVMRYAAKTVGKLAQ 98 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~-l~~~D~~vm~~AA~~lG~L~~ 98 (197)
+...+..+++++|...|..|+.++..|-+-+.. ..+....|..+ +...|..|-..|+.+||++..
T Consensus 55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~ 120 (280)
T PRK09687 55 VFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCK 120 (280)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccc
Confidence 456677788888888888888888776432110 22444555555 567888899999999999864
No 13
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.63 E-value=0.014 Score=42.37 Aligned_cols=107 Identities=19% Similarity=0.116 Sum_probs=78.7
Q ss_pred HHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHH-HHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh
Q psy11494 72 NYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYAD-FEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV 150 (197)
Q Consensus 72 ~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve-~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v 150 (197)
..|..++...|..+...|..+++.++...-.....+++ .-++..++.|.. ....-+..|+..|..|+.+.|......+
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 34445556667899999999999999864344455665 335555566655 3556667899999999999876444444
Q ss_pred -hHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 151 -QAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 151 -~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
..+++.+-..+.+++..+|+.|..+|...
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34788888889999999999999988754
No 14
>KOG2171|consensus
Probab=96.44 E-value=0.069 Score=54.52 Aligned_cols=138 Identities=19% Similarity=0.169 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhc
Q psy11494 20 EEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQI 99 (197)
Q Consensus 20 e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~ 99 (197)
.+|-.|++++...+..++.++.+++|-=|+-.+|.+++.-+....+...+|..++-..++.+|++|-..||-=+|-++..
T Consensus 836 ~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~ 915 (1075)
T KOG2171|consen 836 GSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQF 915 (1075)
T ss_pred ccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 45778888899999999999999999999999999999988888888999999999999999999999999999999999
Q ss_pred cCcchhhhHHHHHHHHHhhhcC--CCcchhhHH---HHHHHHHHHhhCCchhHhhhhHHHHHHHh
Q psy11494 100 SGTFSAEYADFEMKKAIEWLGG--DRVEGKRHA---AVLVLKELAVTVPTIFYQHVQAFFDFVFS 159 (197)
Q Consensus 100 gG~~~~~~Ve~ev~~AlewL~~--~r~e~rR~A---AvLvLrELa~naPt~~~~~v~~~~d~Iw~ 159 (197)
||.--++++......-...++. .|.|.++.| |+-=+--+..+.|+-+- +++++...+.
T Consensus 916 ~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~--vdqvl~~~l~ 978 (1075)
T KOG2171|consen 916 GGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIP--VDQVLPAWLS 978 (1075)
T ss_pred cCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCc--HHHHHHHHHH
Confidence 9988667777666666666663 233444444 23334445566666544 6666665433
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.39 E-value=0.14 Score=48.34 Aligned_cols=146 Identities=17% Similarity=0.122 Sum_probs=99.7
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHH
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADF 110 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ 110 (197)
+-||+.+++++..+-.=....|+.+++-...+ .....+..+|...|...++.|-..|.+.+|+++.+......-+++.
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~--~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSALSPD--SLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 33888888776544444445577777654333 2377889999999999999999999999999998865544445555
Q ss_pred HHHHHH-hhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 111 EMKKAI-EWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 111 ev~~Al-ewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
++=..+ ..|+. ....=--+|+-+|+.|+.+.+-.=.-+-+.....+...+..++..+|-...+++-..
T Consensus 119 ~l~~~i~~~L~~-~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 119 ELLPLIIQCLRD-PDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEI 187 (503)
T ss_pred cHHHHHHHHHcC-CcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 543333 44444 444445567788899998765431111233378888888888989998776665443
No 16
>KOG1242|consensus
Probab=96.39 E-value=0.14 Score=49.33 Aligned_cols=179 Identities=13% Similarity=0.078 Sum_probs=108.6
Q ss_pred HHHHHHHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCC-CChhH
Q psy11494 7 ASMVRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPS-NDIGV 85 (197)
Q Consensus 7 ~~~v~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~-~D~~v 85 (197)
++-|.+..+.+..-.-..-.+++-..+++++++.+..|+.|+..++--+..--+.+.-. -..|-.-|...+.. +...-
T Consensus 113 q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~-~~~~l~~l~~ai~dk~~~~~ 191 (569)
T KOG1242|consen 113 QRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLK-EFGFLDNLSKAIIDKKSALN 191 (569)
T ss_pred HHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhh-hhhHHHHHHHHhcccchhhc
Confidence 34445555555544444445556677899999999999999999998877443222111 12233333333322 11111
Q ss_pred HHHHHHHHHHhhhccCcc--------------------------------------hhhhHHHHHHHHHhhhcCCCcchh
Q psy11494 86 MRYAAKTVGKLAQISGTF--------------------------------------SAEYADFEMKKAIEWLGGDRVEGK 127 (197)
Q Consensus 86 m~~AA~~lG~L~~~gG~~--------------------------------------~~~~Ve~ev~~AlewL~~~r~e~r 127 (197)
++.++-++-.....-|.. .+.=|..-+...+.-+... .+.-
T Consensus 192 re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-kWrt 270 (569)
T KOG1242|consen 192 REAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-KWRT 270 (569)
T ss_pred HHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-hhhh
Confidence 111111111111111111 0111111122222222222 5678
Q ss_pred hHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhcc
Q psy11494 128 RHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRE 187 (197)
Q Consensus 128 R~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~Re 187 (197)
+.|++-+|.-|+..+|...-.+++.+...+=..++|.++.||+++.+++...-.++..-|
T Consensus 271 K~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d 330 (569)
T KOG1242|consen 271 KMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD 330 (569)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH
Confidence 999999999999999999999999999999999999999999999999998877776544
No 17
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.10 E-value=0.26 Score=39.82 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCc-chhhhHHHHHHHhhhCCCC-ChhHHHHHHHHHHHhhhcc
Q psy11494 23 TAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGN-VNSRNIRFANYLRNLLPSN-DIGVMRYAAKTVGKLAQIS 100 (197)
Q Consensus 23 ~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~-~~~~~~rf~~yL~~~l~~~-D~~vm~~AA~~lG~L~~~g 100 (197)
..-.+.+..+|..+++|++...|..|+.-+..+++..+-+ -.+....+.+.|-.+|..+ +..+.+.|-.++.++....
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3455667778999999999999999999999999775333 2234445555555666654 5677888889999998764
Q ss_pred Ccc---hhhhHH----HHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHH
Q psy11494 101 GTF---SAEYAD----FEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVF 158 (197)
Q Consensus 101 G~~---~~~~Ve----~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw 158 (197)
+.+ +-|++. .-++-++.-++. ..-.-.++-.|..+-.+-||.|-+|.+++-..+-
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~ 161 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTFRPFANKIESALL 161 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccccchHHHHHHHHH
Confidence 433 334333 233444444443 4455678889999999999999999888766553
No 18
>PRK09687 putative lyase; Provisional
Probab=95.95 E-value=0.2 Score=43.94 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=46.9
Q ss_pred HHHHHHHH-HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhcc
Q psy11494 23 TAFTDAFN-HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQIS 100 (197)
Q Consensus 23 ~~~~~~l~-~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~g 100 (197)
...+++.+ +.+++++..+|...+..++.++.. .+..+ -...+..++.+.|+.+=..|+++||+|-.++
T Consensus 17 ~~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~---~~~~~-------~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~ 85 (280)
T PRK09687 17 YSQCKKLNDDELFRLLDDHNSLKRISSIRVLQL---RGGQD-------VFRLAIELCSSKNPIERDIGADILSQLGMAK 85 (280)
T ss_pred HHHHhhccHHHHHHHHhCCCHHHHHHHHHHHHh---cCcch-------HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc
Confidence 33444443 458888899999889888777643 33222 2233455667889999999999999997643
No 19
>KOG0212|consensus
Probab=95.94 E-value=0.11 Score=50.05 Aligned_cols=139 Identities=15% Similarity=0.104 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHh-hcCCCcchhhhHHHHHH-HhhhCCCCC-----hhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHH
Q psy11494 44 EKKSGIIAIVCLL-HVDVGNVNSRNIRFANY-LRNLLPSND-----IGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAI 116 (197)
Q Consensus 44 eklggI~aId~Li-~~~~~~~~~~~~rf~~y-L~~~l~~~D-----~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~Al 116 (197)
.|+++++-|.+++ ++-..+...++.++-+- .+....+.+ -.+|-.||-++|- |+-.+.|++.-+.+.+
T Consensus 16 kRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaL-----g~~~~~Y~~~iv~Pv~ 90 (675)
T KOG0212|consen 16 KRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIAL-----GIKDAGYLEKIVPPVL 90 (675)
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHh-----ccccHHHHHHhhHHHH
Confidence 3667777777776 33222334456666663 333333332 3456666665542 2333348888888877
Q ss_pred hhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhcch
Q psy11494 117 EWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRES 188 (197)
Q Consensus 117 ewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~Re~ 188 (197)
-.+.. ....-||-||--|..+|+-+-+-+..|.+.+||..|....|+...||.+|-..=+-.=.|+.++++
T Consensus 91 ~cf~D-~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~ 161 (675)
T KOG0212|consen 91 NCFSD-QDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESAS 161 (675)
T ss_pred HhccC-ccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccccc
Confidence 77654 444568899999999999999999999999999999999999999999988777777777777764
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.92 E-value=0.36 Score=45.56 Aligned_cols=153 Identities=13% Similarity=0.153 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcch-hhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcch
Q psy11494 26 TDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVN-SRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFS 104 (197)
Q Consensus 26 ~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~-~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~ 104 (197)
..++-..+...+++++..=|.-++.+|..+++-..+... -.-..+...+-.++...|.+|.+.|++++.+++.+...+
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~- 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL- 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-
Confidence 333444566666777777677777777777644321100 011235667778889999999999999999999864332
Q ss_pred hhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 105 AEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 105 ~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
..+++......+.-+-...++.-|+-..-++-+++..+|..+-... ..+++.+-..|.+...+++..+.+.|...
T Consensus 154 ~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~L 229 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSEL 229 (503)
T ss_pred HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 2344555445554444444555667777788899999998885554 35999999999999999999999988754
No 21
>KOG0212|consensus
Probab=95.89 E-value=0.29 Score=47.25 Aligned_cols=175 Identities=15% Similarity=0.152 Sum_probs=103.8
Q ss_pred HHHhhhhCHHHHHHHHHHHH-HHHHHHhhCCchhHHHHHHHHHHHH-hhcCCCcchhhhHHHHHHHhhhCCCCChhHHHH
Q psy11494 11 RTELREVTVEEVTAFTDAFN-HHIFEMVSANDVNEKKSGIIAIVCL-LHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRY 88 (197)
Q Consensus 11 ~~~~re~s~e~~~~~~~~l~-~~I~~L~~s~d~~eklggI~aId~L-i~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~ 88 (197)
+...+++-.++-...++.+- ...-+...|++.+-++||++|+.+- |..+..+ ...+.+..--+-.|+...|.++--.
T Consensus 25 Ek~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~-~~Y~~~iv~Pv~~cf~D~d~~vRyy 103 (675)
T KOG0212|consen 25 EKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKD-AGYLEKIVPPVLNCFSDQDSQVRYY 103 (675)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhcccc-HHHHHHhhHHHHHhccCccceeeeH
Confidence 33344444443333333332 2456777899999999999999776 4454333 2222233333333344468888888
Q ss_pred HHHHHHHhhhcc-Ccc------------------------hhhhHHHHHHHHH-------------hhhcC---CCcchh
Q psy11494 89 AAKTVGKLAQIS-GTF------------------------SAEYADFEMKKAI-------------EWLGG---DRVEGK 127 (197)
Q Consensus 89 AA~~lG~L~~~g-G~~------------------------~~~~Ve~ev~~Al-------------ewL~~---~r~e~r 127 (197)
|.+.+=.+++.. |.. +++..+..+|-.. --|.+ ..+..-
T Consensus 104 ACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~t 183 (675)
T KOG0212|consen 104 ACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMT 183 (675)
T ss_pred hHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchH
Confidence 888876666531 111 2223322222211 00100 112334
Q ss_pred hHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhc
Q psy11494 128 RHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQR 186 (197)
Q Consensus 128 R~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~R 186 (197)
|.+=+-=|+-|---.|--|..|++.|+|.+++.|-|+...||.-+-.++...|.=|...
T Consensus 184 R~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~ 242 (675)
T KOG0212|consen 184 RQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS 242 (675)
T ss_pred HHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 44444444444444555899999999999999999999999999999999988877643
No 22
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.83 E-value=0.05 Score=40.59 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHh
Q psy11494 126 GKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 126 ~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
|-|++|+.-|...|..-|..+.+|++.+++-+...+.|+...||..|.++|-...++..
T Consensus 1 n~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~ 59 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR 59 (97)
T ss_pred CchhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999998776653
No 23
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.54 E-value=0.031 Score=32.76 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=24.2
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 153 FFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 153 ~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
++..+...+.||...||.+|+.+|....+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46678899999999999999999987654
No 24
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.03 E-value=0.18 Score=35.10 Aligned_cols=83 Identities=27% Similarity=0.258 Sum_probs=59.3
Q ss_pred HhhhC-CCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhH
Q psy11494 74 LRNLL-PSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQA 152 (197)
Q Consensus 74 L~~~l-~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~ 152 (197)
|...+ ...|..+-..|++++|++-.+ +. +..-++.+ .+....-|.+|+..|.++. -+.
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~~~~------~~----~~~L~~~l-~d~~~~vr~~a~~aL~~i~----------~~~ 62 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGELGDP------EA----IPALIELL-KDEDPMVRRAAARALGRIG----------DPE 62 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCCTHH------HH----HHHHHHHH-TSSSHHHHHHHHHHHHCCH----------HHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCH------hH----HHHHHHHH-cCCCHHHHHHHHHHHHHhC----------CHH
Confidence 34444 678999999999999966432 22 23333444 5677788999999988773 366
Q ss_pred HHHHHHhhhcCC-cHHHHHHHHHHHH
Q psy11494 153 FFDFVFSAVRDP-KPEIRLHAVKAIR 177 (197)
Q Consensus 153 ~~d~Iw~aLrDp-k~~iRe~Aa~aL~ 177 (197)
.++.++..+.|+ +..||..|+.+|.
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 788888888885 5677999999884
No 25
>PTZ00429 beta-adaptin; Provisional
Probab=95.02 E-value=0.64 Score=46.31 Aligned_cols=136 Identities=16% Similarity=0.149 Sum_probs=87.9
Q ss_pred HHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH
Q psy11494 32 HIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE 111 (197)
Q Consensus 32 ~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e 111 (197)
.+..+++++|...|+=+-+.+..+.+.. +....--.|.|.+=+.++|+.+--.|-+++|.+-.+ -..+++...
T Consensus 72 dVvk~~~S~d~elKKLvYLYL~~ya~~~----pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~---~i~e~l~~~ 144 (746)
T PTZ00429 72 DVVKLAPSTDLELKKLVYLYVLSTARLQ----PEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVS---SVLEYTLEP 144 (746)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcccC----hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH---HHHHHHHHH
Confidence 3444555666555554444443333222 222333456666666777888888899999887654 256667677
Q ss_pred HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 112 MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 112 v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
|++++. ....-.||-||..++| +-...|.++.. ..+.+.+-..|.|+++.|.-.|..+|..+-
T Consensus 145 lkk~L~---D~~pYVRKtAalai~K-ly~~~pelv~~--~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 145 LRRAVA---DPDPYVRKTAAMGLGK-LFHDDMQLFYQ--QDFKKDLVELLNDNNPVVASNAAAIVCEVN 207 (746)
T ss_pred HHHHhc---CCCHHHHHHHHHHHHH-HHhhCcccccc--cchHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 777773 4456678888888777 66778876532 234445555689999999999999888773
No 26
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=94.84 E-value=1.7 Score=35.00 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=99.5
Q ss_pred hhhHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCC
Q psy11494 3 IATGASMVRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSND 82 (197)
Q Consensus 3 ~~~~~~~v~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D 82 (197)
...++.......++.+ .++......++.+.+ ++..+++|++.+-.. .........|-.+++ .-++
T Consensus 21 ~p~lr~iak~~~k~~~-------~~~~~~l~~~l~~e~---~~~~~~lal~~~~~~--~~~~~~~~~~~~~i~---~~~~ 85 (197)
T cd06561 21 TPDLRKIAKEFKKEDK-------LEEDHELAEALWHEE---IREAQYLALDLLDKK--ELKEEDLERFEPWIE---YIDN 85 (197)
T ss_pred HHHHHHHHHHHHHhcC-------HHHHHHHHHHHHccH---HHHHHHHHHHHHHHh--cCCHHHHHHHHHHHc---CCch
Confidence 3445555555555444 223444444555544 588888888888753 122334666777776 3345
Q ss_pred hhHHH-HHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhh
Q psy11494 83 IGVMR-YAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAV 161 (197)
Q Consensus 83 ~~vm~-~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aL 161 (197)
-.++. .++.++|++...- .++ +...+|..++....||.|-+..++-..+ -.++..+++.+=..+
T Consensus 86 W~~~D~~~~~~~~~~~~~~----~~~-----~~~~~w~~s~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~ 150 (197)
T cd06561 86 WDLVDSLCANLLGKLLYAE----PEL-----DLLEEWAKSENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLL 150 (197)
T ss_pred HHHHHHHHHHHHHHHHhcC----cch-----HHHHHHHhCCcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhC
Confidence 55554 4667777765421 111 6788999998888899888877665544 346788888888888
Q ss_pred cCCcHHHHHHHHHHHHHHHHH
Q psy11494 162 RDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 162 rDpk~~iRe~Aa~aL~~cL~i 182 (197)
.|+...|+.+.+-+|+.|..-
T Consensus 151 ~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 151 HDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999987765
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=94.74 E-value=1.6 Score=40.29 Aligned_cols=130 Identities=14% Similarity=0.168 Sum_probs=89.5
Q ss_pred hhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHH
Q psy11494 37 VSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAI 116 (197)
Q Consensus 37 ~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~Al 116 (197)
+++++..-+--++.+ |-.+. ++.....+...+.+++.++++.|=+.|+-++.++.+.......+.+ ++...
T Consensus 88 l~~~n~~~~~lAL~~---l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~---~~~l~ 158 (526)
T PF01602_consen 88 LNSPNPYIRGLALRT---LSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDEL---IPKLK 158 (526)
T ss_dssp HCSSSHHHHHHHHHH---HHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGH---HHHHH
T ss_pred hcCCCHHHHHHHHhh---hhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHH---HHHHh
Confidence 445554444444444 44333 2334667888888999999999999999999999987444433312 23333
Q ss_pred hhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 117 EWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 117 ewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
.-| .+....=+.+|+.++.++ +..|..+-..++.++..+-..+.+|.+-++......|.
T Consensus 159 ~lL-~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~ 217 (526)
T PF01602_consen 159 QLL-SDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLR 217 (526)
T ss_dssp HHT-THSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHT
T ss_pred hhc-cCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHH
Confidence 333 556677788999999999 65666555777888888888889999988887777665
No 28
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.72 E-value=0.37 Score=39.05 Aligned_cols=92 Identities=22% Similarity=0.196 Sum_probs=69.4
Q ss_pred ChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhh
Q psy11494 82 DIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAV 161 (197)
Q Consensus 82 D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aL 161 (197)
|+.+--.+-.++|-|+.. -..+||.-++.-...|..+.... |..|+.+|..|..+-..-+- +++|..+-..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r----~~~~ve~~~~~l~~~L~D~~~~V-R~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR----YPNLVEPYLPNLYKCLRDEDPLV-RKTALLVLSHLILEDMIKVK---GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHh----CcHHHHhHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence 456667788899999975 34677777788888888765555 55789999999988554444 44566677788
Q ss_pred cCCcHHHHHHHHHHHHHHHH
Q psy11494 162 RDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 162 rDpk~~iRe~Aa~aL~~cL~ 181 (197)
.|+++.||..|..++...+.
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLK 92 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 99999999999998876543
No 29
>KOG4653|consensus
Probab=94.54 E-value=0.88 Score=45.86 Aligned_cols=147 Identities=15% Similarity=0.118 Sum_probs=103.7
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHH-HHhhh-CCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFAN-YLRNL-LPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~-yL~~~-l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
+.+-..++++--|+.=-+.+|.++.+|-++...+ .+..+.. |...- -+..|. ..+..+++|+++..-|-+...
T Consensus 769 vl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~---il~dL~e~Y~s~k~k~~~d~--~lkVGEai~k~~qa~Gel~~~ 843 (982)
T KOG4653|consen 769 VLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED---ILPDLSEEYLSEKKKLQTDY--RLKVGEAILKVAQALGELVFK 843 (982)
T ss_pred HHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh---hHHHHHHHHHhcccCCCccc--eehHHHHHHHHHHHhccHHHH
Confidence 4444556666667666778888888888874222 2333333 22211 122233 344569999999999999999
Q ss_pred hHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHH
Q psy11494 107 YADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVR-DPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 107 ~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLr-Dpk~~iRe~Aa~aL~~cL~ 181 (197)
|.+--+..++...++ ..+.-|.+++-.|.+|+...-..+-..+.+++-+|-...+ |-++.+|.+|+..++.||.
T Consensus 844 y~~~Li~tfl~gvre-pd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 844 YKAVLINTFLSGVRE-PDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHHHHHHHhcCC-chHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 999888888888884 4555699999999999988665555566666666544433 8899999999999999987
No 30
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=94.25 E-value=0.08 Score=33.54 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=32.5
Q ss_pred HHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHH
Q psy11494 135 LKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAI 176 (197)
Q Consensus 135 LrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL 176 (197)
|-++...-|+++... .+++.|=..+.|+++.||++|.+++
T Consensus 3 l~~iv~~dp~ll~~~--~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSS--DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccchH--HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 445666777776654 8889999999999999999998864
No 31
>KOG1943|consensus
Probab=94.09 E-value=2.4 Score=43.71 Aligned_cols=162 Identities=16% Similarity=0.095 Sum_probs=113.8
Q ss_pred hCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHh
Q psy11494 17 VTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKL 96 (197)
Q Consensus 17 ~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L 96 (197)
-.+|+.......+-.++++.++..|+.=+--+.-++..++.-..-+.. ..-..+-+...-|..|...---|.-++++|
T Consensus 330 ~e~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~La--d~vi~svid~~~p~e~~~aWHgacLaLAEL 407 (1133)
T KOG1943|consen 330 DEGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELA--DQVIGSVIDLFNPAEDDSAWHGACLALAEL 407 (1133)
T ss_pred ccccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHH--HHHHHHHHHhcCcCCchhHHHHHHHHHHHH
Confidence 344556677777888888888888886676777777766643322211 123445555555777778778899999999
Q ss_pred hhccCcchhhhHH--HHHHHHHhhhc----CCCcchhhHHHHHHHHHHHhh-CCchhHhhhhHHHHH-HHhhhcCCcHHH
Q psy11494 97 AQISGTFSAEYAD--FEMKKAIEWLG----GDRVEGKRHAAVLVLKELAVT-VPTIFYQHVQAFFDF-VFSAVRDPKPEI 168 (197)
Q Consensus 97 ~~~gG~~~~~~Ve--~ev~~AlewL~----~~r~e~rR~AAvLvLrELa~n-aPt~~~~~v~~~~d~-Iw~aLrDpk~~i 168 (197)
|+-|=-+.+-+.+ --|-.|+-+=. -....+=|=||+-+.-.+++. .|+.+-+++.+++.+ +=+|+.||...+
T Consensus 408 A~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 408 ALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNC 487 (1133)
T ss_pred HhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhH
Confidence 9876443332221 22224443321 123467789999999999998 899999999988887 778999999999
Q ss_pred HHHHHHHHHHHH
Q psy11494 169 RLHAVKAIRAAL 180 (197)
Q Consensus 169 Re~Aa~aL~~cL 180 (197)
|.+|+.||..-.
T Consensus 488 RRAAsAAlqE~V 499 (1133)
T KOG1943|consen 488 RRAASAALQENV 499 (1133)
T ss_pred hHHHHHHHHHHh
Confidence 999999998543
No 32
>KOG1820|consensus
Probab=94.00 E-value=1.4 Score=44.43 Aligned_cols=148 Identities=14% Similarity=0.170 Sum_probs=117.6
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCC-CcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhH
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDV-GNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYA 108 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~-~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~V 108 (197)
-..+..-+.|++=.+++-|+..+...+.-.. .-......-+.-+++..+-..+..|...||.+++.++.--+..-..|+
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 3445566678888999999999988886554 224455566777777777778999999999999999998777778888
Q ss_pred HHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHh
Q psy11494 109 DFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 109 e~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
......-|+-+.. +.-.-|-+.+=.+...+. -.++..+++.|-.+++++++.+|......|..|+..+.
T Consensus 335 ~~v~p~lld~lke-kk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 335 KNVFPSLLDRLKE-KKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred HhhcchHHHHhhh-ccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Confidence 8888888888865 455557777777777666 44577889999999999999999999999999998765
No 33
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.89 E-value=5.1 Score=36.72 Aligned_cols=112 Identities=18% Similarity=0.267 Sum_probs=76.3
Q ss_pred hHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhcc-Ccch------------hhhHHHHHHHHHhhhcCCCcchhhHHHHH
Q psy11494 67 NIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQIS-GTFS------------AEYADFEMKKAIEWLGGDRVEGKRHAAVL 133 (197)
Q Consensus 67 ~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~g-G~~~------------~~~Ve~ev~~AlewL~~~r~e~rR~AAvL 133 (197)
...+.+.|-.++.+ .++...||+.+|-|+... ..+. ..|+..-+..-++-..+...+ .|..-..
T Consensus 269 ~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~-~k~~yL~ 345 (415)
T PF12460_consen 269 ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE-IKSNYLT 345 (415)
T ss_pred HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh-hHHHHHH
Confidence 33445545555444 778899999999999872 2221 223333344444444433322 4555566
Q ss_pred HHHHHHhhCCc-hhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 134 VLKELAVTVPT-IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 134 vLrELa~naPt-~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
-|--+.++.|. ++.++++.++.-+-.+|.-|+..++.++.++|...+.
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILE 394 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 66668889998 7778899999999999999999999999988876553
No 34
>KOG0915|consensus
Probab=93.72 E-value=1.7 Score=46.33 Aligned_cols=144 Identities=20% Similarity=0.235 Sum_probs=108.0
Q ss_pred HHHHhh-CCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCC-------CChhHHHHHHHHHHHhhhccCcch
Q psy11494 33 IFEMVS-ANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPS-------NDIGVMRYAAKTVGKLAQISGTFS 104 (197)
Q Consensus 33 I~~L~~-s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~-------~D~~vm~~AA~~lG~L~~~gG~~~ 104 (197)
.++|-+ +..=|-|+|+.-+..++..-. --+...||+.++|- +|..|-..-+..||-|..-+...+
T Consensus 961 FM~LAnh~A~wnSk~GaAfGf~~i~~~a-------~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~v 1033 (1702)
T KOG0915|consen 961 FMQLANHNATWNSKKGAAFGFGAIAKQA-------GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVV 1033 (1702)
T ss_pred HHHHhhhhchhhcccchhhchHHHHHHH-------HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHH
Confidence 445553 344477999999998887443 22567788888773 588888888899998887765666
Q ss_pred hhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCc-hhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q psy11494 105 AEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT-IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 105 ~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt-~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii 183 (197)
.+|.-.=++.-+.-| +++-+-=|-|+||-|..|.+.-|+ -+..+++.+.+.+|...=|-|.-||++|-.+.+..-+++
T Consensus 1034 d~y~neIl~eLL~~l-t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1034 DEYLNEILDELLVNL-TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666544333333333 335555699999999999999998 678889999999999999999999999999888766654
Q ss_pred h
Q psy11494 184 A 184 (197)
Q Consensus 184 ~ 184 (197)
.
T Consensus 1113 v 1113 (1702)
T KOG0915|consen 1113 V 1113 (1702)
T ss_pred h
Confidence 3
No 35
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.63 E-value=3.2 Score=37.68 Aligned_cols=120 Identities=19% Similarity=0.279 Sum_probs=92.4
Q ss_pred hhhhHHHHHHHhhhCCC-------CChhHHHHHHHHHHHhhhc---cCcchhhhHHHHHHHHHhhhcCCCc---------
Q psy11494 64 NSRNIRFANYLRNLLPS-------NDIGVMRYAAKTVGKLAQI---SGTFSAEYADFEMKKAIEWLGGDRV--------- 124 (197)
Q Consensus 64 ~~~~~rf~~yL~~~l~~-------~D~~vm~~AA~~lG~L~~~---gG~~~~~~Ve~ev~~AlewL~~~r~--------- 124 (197)
..++..|.+++++=+.+ -|.+++..|=+++|-+..+ ...++.|+..+.+++|++-|..+..
T Consensus 34 ~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l 113 (372)
T PF12231_consen 34 QDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYL 113 (372)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45566777777665544 3889999999999999865 4468899999999999998853321
Q ss_pred ----------------chhhH------------------HHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHH
Q psy11494 125 ----------------EGKRH------------------AAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRL 170 (197)
Q Consensus 125 ----------------e~rR~------------------AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe 170 (197)
...|+ =+..+++-|..++|..+-.+++..++.+...+-+....||.
T Consensus 114 ~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~ 193 (372)
T PF12231_consen 114 WCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRT 193 (372)
T ss_pred HHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 11222 23367788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy11494 171 HAVKAIRAALVVT 183 (197)
Q Consensus 171 ~Aa~aL~~cL~ii 183 (197)
.|...+..+...+
T Consensus 194 ~a~~l~~~~~~~l 206 (372)
T PF12231_consen 194 KAISLLLEAKKCL 206 (372)
T ss_pred HHHHHHHHHHHHh
Confidence 8777666554333
No 36
>KOG0392|consensus
Probab=93.49 E-value=1.6 Score=45.71 Aligned_cols=107 Identities=16% Similarity=0.099 Sum_probs=92.5
Q ss_pred HHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhH
Q psy11494 73 YLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQA 152 (197)
Q Consensus 73 yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~ 152 (197)
-+..++++.++.+--.||+++|-+...+ +.|..-.-++..+-|+..-..-+||.+|..++.=|..---+...+|.+-
T Consensus 820 ~l~~~~~s~~~a~r~~~ar~i~~~~k~~---~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~L 896 (1549)
T KOG0392|consen 820 RLFFFVRSIHIAVRYAAARCIGTMFKSA---TRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPL 896 (1549)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhccccccccee
Confidence 3455677889999999999999999865 5666666678888899888889999999999998988888899999999
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 153 FFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 153 ~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
+..-+...+.|....||++|..+++....+
T Consensus 897 lv~pllr~msd~~d~vR~aat~~fa~lip~ 926 (1549)
T KOG0392|consen 897 LVVPLLRRMSDQIDSVREAATKVFAKLIPL 926 (1549)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999876544
No 37
>KOG1242|consensus
Probab=93.43 E-value=2.1 Score=41.44 Aligned_cols=158 Identities=15% Similarity=0.197 Sum_probs=112.7
Q ss_pred HhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChh-HHHHHHH
Q psy11494 13 ELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIG-VMRYAAK 91 (197)
Q Consensus 13 ~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~-vm~~AA~ 91 (197)
..-+..+++..-++-++-..+.+.+.-+++.-|..|+.+|..+-++- +++ -+.+|.+-|-.++. |+. -...+.+
T Consensus 280 ~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi--dN~-dI~~~ip~Lld~l~--dp~~~~~e~~~ 354 (569)
T KOG1242|consen 280 AMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI--DNP-DIQKIIPTLLDALA--DPSCYTPECLD 354 (569)
T ss_pred HHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh--ccH-HHHHHHHHHHHHhc--CcccchHHHHH
Confidence 44567778889999999999999999999999999999999987663 222 28888888877764 333 3344555
Q ss_pred HHHHhhhccCcchh-------hhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhC--CchhHhhhhHHHHHHHhhhc
Q psy11494 92 TVGKLAQISGTFSA-------EYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTV--PTIFYQHVQAFFDFVFSAVR 162 (197)
Q Consensus 92 ~lG~L~~~gG~~~~-------~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~na--Pt~~~~~v~~~~d~Iw~aLr 162 (197)
.+|.. ++.+ +++---++|++ .+|.-.-+=.++-+.--++.-. |-.+-+|+++++..+=..+-
T Consensus 355 ~L~~t-----tFV~~V~~psLalmvpiL~R~l----~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~ 425 (569)
T KOG1242|consen 355 SLGAT-----TFVAEVDAPSLALMVPILKRGL----AERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLD 425 (569)
T ss_pred hhcce-----eeeeeecchhHHHHHHHHHHHH----hhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhc
Confidence 55532 2222 23333344443 2343333334555566677766 88999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHh
Q psy11494 163 DPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 163 Dpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
||-+.+|+-|+.||...++=+.
T Consensus 426 d~~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 426 DAVPEVRAVAARALGALLERLG 447 (569)
T ss_pred CCChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999976655433
No 38
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.97 E-value=1.4 Score=41.80 Aligned_cols=136 Identities=21% Similarity=0.234 Sum_probs=87.4
Q ss_pred HHHHHHhhCCch----hHHHHHHHHHHHHhhcCCCcc----hhhhHHHHHHHh----hhCCCCChhHHHHHHHHHHHhhh
Q psy11494 31 HHIFEMVSANDV----NEKKSGIIAIVCLLHVDVGNV----NSRNIRFANYLR----NLLPSNDIGVMRYAAKTVGKLAQ 98 (197)
Q Consensus 31 ~~I~~L~~s~d~----~eklggI~aId~Li~~~~~~~----~~~~~rf~~yL~----~~l~~~D~~vm~~AA~~lG~L~~ 98 (197)
+.+++|++++.. .=+.+++++..+|+.-...+. ......|..||. ......|..-+..+=++||.+..
T Consensus 396 ~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 475 (574)
T smart00638 396 KALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH 475 (574)
T ss_pred HHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC
Confidence 558888876533 224578999999985322221 112234555544 44455788888899999998887
Q ss_pred ccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 99 ISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 99 ~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
+.. .+..+. -++ =..+-...-|.+|+.-|+-++...|..+.+.+-++|.+ .+-...||-+|..+|-.
T Consensus 476 ~~~---i~~l~~----~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n-----~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 476 PSS---IKVLEP----YLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN-----RAEPPEVRMAAVLVLME 542 (574)
T ss_pred hhH---HHHHHH----hcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC-----CCCChHHHHHHHHHHHh
Confidence 632 122221 111 01223456899999999999999998777666555522 23467799999988877
Q ss_pred H
Q psy11494 179 A 179 (197)
Q Consensus 179 c 179 (197)
|
T Consensus 543 t 543 (574)
T smart00638 543 T 543 (574)
T ss_pred c
Confidence 7
No 39
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.87 E-value=0.18 Score=32.70 Aligned_cols=52 Identities=21% Similarity=0.100 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHh
Q psy11494 45 KKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKL 96 (197)
Q Consensus 45 klggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L 96 (197)
|.+++.+|..+.+................|..+|...+..|-..|+++||+|
T Consensus 4 R~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6788888887665554445556777888888888877889999999999975
No 40
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.78 E-value=3.4 Score=33.41 Aligned_cols=132 Identities=18% Similarity=0.099 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCc
Q psy11494 45 KKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRV 124 (197)
Q Consensus 45 klggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~ 124 (197)
|-..+.++.-|.-- .++.+-.+...+..+|...|+.|=+.|-.++-+|...|=....+-+= -+-+.-| .|..
T Consensus 5 R~n~i~~l~DL~~r----~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~---~~~l~~l-~D~~ 76 (178)
T PF12717_consen 5 RNNAIIALGDLCIR----YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLF---SRILKLL-VDEN 76 (178)
T ss_pred HHHHHHHHHHHHHh----CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhh---HHHHHHH-cCCC
Confidence 44556666555422 13345678888888999999999999999999998754333222221 2222333 5566
Q ss_pred chhhHHHHHHHHHHHhh-CCchhHhhhhHHHHHHHhhhcCCc--HHHHHHHHHHHHHHHHHHh
Q psy11494 125 EGKRHAAVLVLKELAVT-VPTIFYQHVQAFFDFVFSAVRDPK--PEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 125 e~rR~AAvLvLrELa~n-aPt~~~~~v~~~~d~Iw~aLrDpk--~~iRe~Aa~aL~~cL~ii~ 184 (197)
+.=|-.|..++.|++.. .|..||++++.++..+=..-.+|- ..-++.=..-+.-++..+.
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 66778888899999999 999999999988886555443331 1233333444455555554
No 41
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=92.64 E-value=0.38 Score=33.43 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=43.0
Q ss_pred HHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 113 KKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 113 ~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
+.-++.|..+....-|..|+..|.++.. +...+.+-..+.|+...||..|+.+|..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 57 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGR 57 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4456778677777778888888774432 2567777777899999999999999984
No 42
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.61 E-value=0.21 Score=41.49 Aligned_cols=55 Identities=27% Similarity=0.330 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHhh-CCchhHhhhhHHHHHH------------HhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 128 RHAAVLVLKELAVT-VPTIFYQHVQAFFDFV------------FSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 128 R~AAvLvLrELa~n-aPt~~~~~v~~~~d~I------------w~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
|.+|...|..++++ -|-.||.|-+.||.-- =..++||..-+|-+|+.++.+.|.=
T Consensus 3 R~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g 70 (182)
T PF13251_consen 3 RQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG 70 (182)
T ss_pred hHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc
Confidence 88999999999999 7779999988777554 4578999999999999999988753
No 43
>KOG0166|consensus
Probab=92.29 E-value=1.2 Score=42.67 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=83.5
Q ss_pred hhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH--HHHHHhhhcCCCcchhhHHHHHHHHHHHhhC-CchhHhhhh
Q psy11494 75 RNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE--MKKAIEWLGGDRVEGKRHAAVLVLKELAVTV-PTIFYQHVQ 151 (197)
Q Consensus 75 ~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e--v~~AlewL~~~r~e~rR~AAvLvLrELa~na-Pt~~~~~v~ 151 (197)
-.++.+++..|-+.|.|++|.++..|-. -.|+|=.. ++.-+.-+..+..-.-+--+.+.|.-|+++- |.==+..+.
T Consensus 158 i~Ll~s~~~~v~eQavWALgNIagds~~-~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~ 236 (514)
T KOG0166|consen 158 IQLLSSPSADVREQAVWALGNIAGDSPD-CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA 236 (514)
T ss_pred HHHhcCCcHHHHHHHHHHHhccccCChH-HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 4456677999999999999999988744 35554432 5555666665554445556889999999996 998999999
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 152 AFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 152 ~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
.+++.+-..|.+....|...|.-|+++.-
T Consensus 237 ~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 237 PILPALLRLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998653
No 44
>KOG1248|consensus
Probab=92.02 E-value=15 Score=38.43 Aligned_cols=109 Identities=14% Similarity=0.163 Sum_probs=84.3
Q ss_pred HHHHHHHhhhCCC--CChhHHHHH-HHHHHHhhhc-cCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCC
Q psy11494 68 IRFANYLRNLLPS--NDIGVMRYA-AKTVGKLAQI-SGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVP 143 (197)
Q Consensus 68 ~rf~~yL~~~l~~--~D~~vm~~A-A~~lG~L~~~-gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naP 143 (197)
.....||..+-++ +|..-|... --++++++.- ++-+..++++.-+.....||.+.+.+- +-||+-+++-+...-|
T Consensus 781 ~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI-~kaAI~fikvlv~~~p 859 (1176)
T KOG1248|consen 781 AILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREI-AKAAIGFIKVLVYKFP 859 (1176)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHcCC
Confidence 3455566666565 787777766 4566777765 556678899999999999999866655 5589999999999999
Q ss_pred c-hhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 144 T-IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 144 t-~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
- .+-+|++.++..+...+.|-+.-+|...--.|.
T Consensus 860 e~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 860 EECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 8 667889999999999999988887776554443
No 45
>KOG1851|consensus
Probab=91.70 E-value=4.5 Score=43.33 Aligned_cols=102 Identities=24% Similarity=0.172 Sum_probs=80.5
Q ss_pred HhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHH
Q psy11494 74 LRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAF 153 (197)
Q Consensus 74 L~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~ 153 (197)
+...+.-.|.+|++.||+++.-|...+--...+ +.+-..+..-......+.+.|+|||.|-.++..-|.++-..++.+
T Consensus 1574 ~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~--~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~ 1651 (1710)
T KOG1851|consen 1574 LESLLNDDQIEVREEAAKCLSGLLQGSKFQFVS--DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKP 1651 (1710)
T ss_pred HHHHHcchHHHHHHHHHHHHHHHHhccccccch--HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHH
Confidence 334445567899999999998887644333333 444444555555667789999999999999999999999999999
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 154 FDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 154 ~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
+.++=.--||| ..|+.++.++++.
T Consensus 1652 L~~Ls~fa~e~-~~i~~tvkktvse 1675 (1710)
T KOG1851|consen 1652 LMNLSSFARES-AAIKQTVKKTVSE 1675 (1710)
T ss_pred HHHHHhhcCCc-hHHHHHHHHHHHH
Confidence 99998889999 9999999998874
No 46
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=91.66 E-value=3.4 Score=45.58 Aligned_cols=152 Identities=13% Similarity=0.056 Sum_probs=93.3
Q ss_pred HHHHhhCCchhHHHHHHHHHHHHhhcCCCcc-hhh---hHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhH
Q psy11494 33 IFEMVSANDVNEKKSGIIAIVCLLHVDVGNV-NSR---NIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYA 108 (197)
Q Consensus 33 I~~L~~s~d~~eklggI~aId~Li~~~~~~~-~~~---~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~V 108 (197)
+.+|+.+.+.+.+.-.+.++..++.....+. ... ...-...|-.++.+++...-+.|+++++.++..--.....++
T Consensus 569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv 648 (2102)
T PLN03200 569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLA 648 (2102)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 4455556665556555666655554321110 000 113445666777788999999999999999874322333344
Q ss_pred HHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCch--hHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhh
Q psy11494 109 DFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTI--FYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQ 185 (197)
Q Consensus 109 e~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~--~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~ 185 (197)
+.+ |...+.-|+....+.+|- |+.-|-.|+.....- .+---...+.-+-..|.+++..+++.|+.||..++.--..
T Consensus 649 ~agaIpPLV~LLss~~~~v~ke-AA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~ 727 (2102)
T PLN03200 649 TDEIINPCIKLLTNNTEAVATQ-SARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV 727 (2102)
T ss_pred HcCCHHHHHHHHhcCChHHHHH-HHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH
Confidence 443 778888888755555554 555556666543221 1111122455577778999999999999999988875433
No 47
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.60 E-value=1.2 Score=42.39 Aligned_cols=148 Identities=17% Similarity=0.249 Sum_probs=88.0
Q ss_pred hhhCHHHHHHHHHHH-----------HHHHHHHhhCCchh----HHHHHHHHHHHHhhc--CC-----------Cc-chh
Q psy11494 15 REVTVEEVTAFTDAF-----------NHHIFEMVSANDVN----EKKSGIIAIVCLLHV--DV-----------GN-VNS 65 (197)
Q Consensus 15 re~s~e~~~~~~~~l-----------~~~I~~L~~s~d~~----eklggI~aId~Li~~--~~-----------~~-~~~ 65 (197)
+++++.....++..+ -+.+++|++++... =+-.+++++.+|+.- .. .. ...
T Consensus 407 ~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~ 486 (618)
T PF01347_consen 407 KKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEK 486 (618)
T ss_dssp T-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GG
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHH
Confidence 556666555544443 24467888765432 234789999999733 11 11 223
Q ss_pred hhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCC--CcchhhHHHHHHHHHHHhhCC
Q psy11494 66 RNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGD--RVEGKRHAAVLVLKELAVTVP 143 (197)
Q Consensus 66 ~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~--r~e~rR~AAvLvLrELa~naP 143 (197)
.+..|...|.......|..-...+=++||.+..+. +. +.....+.+. -...-|.+|+.-|+.++...|
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~---~i-------~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~ 556 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPE---SI-------PVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP 556 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GG---GH-------HHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCch---hh-------HHHHhHhhhccccchHHHHHHHHHHHHHhhcCc
Confidence 34446666665566789999999999999997652 11 2223334433 456689999999998877777
Q ss_pred chhHhhhhHHHHHHHhhhcCC--cHHHHHHHHHHHHHH
Q psy11494 144 TIFYQHVQAFFDFVFSAVRDP--KPEIRLHAVKAIRAA 179 (197)
Q Consensus 144 t~~~~~v~~~~d~Iw~aLrDp--k~~iRe~Aa~aL~~c 179 (197)
..+.+.+ |.-+.|+ ...||-+|...|-.|
T Consensus 557 ~~v~~~l-------~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 557 EKVREIL-------LPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp HHHHHHH-------HHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred HHHHHHH-------HHHhcCCCCChhHHHHHHHHHHhc
Confidence 6555544 4444554 566999999988877
No 48
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=91.33 E-value=3.4 Score=31.06 Aligned_cols=76 Identities=13% Similarity=0.164 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhc
Q psy11494 22 VTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQI 99 (197)
Q Consensus 22 ~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~ 99 (197)
+-.....+++.+.++-.+.+..||+.++.+|..||...+.....-..+...-|+..+..+ ++-..|-++|.-+++.
T Consensus 9 ~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 9 ILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHH
Confidence 334455666666666567889999999999999999665554444555555556655544 6667889999988874
No 49
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=91.18 E-value=3.4 Score=45.63 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=99.4
Q ss_pred HHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HH--HHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 32 HIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IR--FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 32 ~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~r--f~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
-+..++++++..-++.+..||..|.... ...++. .+ ....|-.++.++|..+...|+.+++.++..|-. ..++
T Consensus 655 PLV~LLss~~~~v~keAA~AL~nL~~~~--~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~-~~ei 731 (2102)
T PLN03200 655 PCIKLLTNNTEAVATQSARALAALSRSI--KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV-AAEA 731 (2102)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhCC--CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH-HHHH
Confidence 3667777777777888899998888532 222211 11 344566777889999999999999999997643 3444
Q ss_pred HHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCc--hhHhhh--hHHHHHHHhhhcCCcHHHHHH--HHHHHHHHH
Q psy11494 108 ADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT--IFYQHV--QAFFDFVFSAVRDPKPEIRLH--AVKAIRAAL 180 (197)
Q Consensus 108 Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt--~~~~~v--~~~~d~Iw~aLrDpk~~iRe~--Aa~aL~~cL 180 (197)
.+. =|..-.+.|++...++ |-.|+..|.+|+++-|. .+-.++ --....+-..|+.++..+-.. |.++|....
T Consensus 732 ~~~~~I~~Lv~lLr~G~~~~-k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~ 810 (2102)
T PLN03200 732 LAEDIILPLTRVLREGTLEG-KRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLA 810 (2102)
T ss_pred HhcCcHHHHHHHHHhCChHH-HHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHH
Confidence 432 2666677787655554 55566777889999883 232332 334445566677666666554 666666433
Q ss_pred HHHhhcchhhhhcCCCC
Q psy11494 181 VVTAQRESAKQSQKPQW 197 (197)
Q Consensus 181 ~ii~~Re~~~~~~~~~~ 197 (197)
+ .++ .-+..+|-|
T Consensus 811 ~---~~~-~~~~~~~~~ 823 (2102)
T PLN03200 811 R---TKG-GANFSHPPW 823 (2102)
T ss_pred h---hcc-cCCCCCCch
Confidence 3 333 333455655
No 50
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=90.89 E-value=4.1 Score=41.25 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=38.1
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhh
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLA 97 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~ 97 (197)
..+.++++.+|..-|..++.++..+-+ ......|...|..+|..|-..|+.+|+++.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~ 680 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELV 680 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 356677788888888887777754321 124445556666777777777777777774
No 51
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=89.61 E-value=4.6 Score=40.86 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=27.5
Q ss_pred HHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHh
Q psy11494 33 IFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKL 96 (197)
Q Consensus 33 I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L 96 (197)
+..+++.++..=+...+.++..+-+-+ .. -...|..++...|+.|-..|+.+||++
T Consensus 747 l~~~l~D~~~~VR~~aa~aL~~~~~~~---~~-----~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 747 VAGAATDENREVRIAVAKGLATLGAGG---AP-----AGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcccc---ch-----hHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 344555555555655555554432111 00 012233445555666666666666655
No 52
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=89.49 E-value=1.4 Score=43.31 Aligned_cols=98 Identities=17% Similarity=0.236 Sum_probs=76.4
Q ss_pred CCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCC-CcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHH
Q psy11494 80 SNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGD-RVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVF 158 (197)
Q Consensus 80 ~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~-r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw 158 (197)
+.|.=|-..+++++|-.+..-|- .|+..-++-+-+. ++...|+.++-+.++++.-..-...+|+..+++.|=
T Consensus 292 ~~deYVRnvt~ra~~vva~algv-------~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~ 364 (975)
T COG5181 292 SKDEYVRNVTGRAVGVVADALGV-------EELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCIS 364 (975)
T ss_pred cccHHHHHHHHHHHHHHHHhhCc-------HHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHH
Confidence 45666666677777766654322 1222333333333 488999999999999999999999999999999999
Q ss_pred hhhcCCcHHHHHHHHHHHHHHHHHHh
Q psy11494 159 SAVRDPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 159 ~aLrDpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
..|.|-+.-||-.+|.+|++..+...
T Consensus 365 ~~l~D~~~~vRi~tA~alS~lae~~~ 390 (975)
T COG5181 365 KLLKDRSRFVRIDTANALSYLAELVG 390 (975)
T ss_pred HHhhccceeeeehhHhHHHHHHHhcC
Confidence 99999999999999999999887653
No 53
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=89.16 E-value=5.9 Score=39.22 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=34.1
Q ss_pred HhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHh
Q psy11494 147 YQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 147 ~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
-+|++++...|...||+|.+.+|+.|++.....-.+++
T Consensus 599 kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk 636 (975)
T COG5181 599 KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLK 636 (975)
T ss_pred CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999887777776
No 54
>KOG0213|consensus
Probab=88.93 E-value=29 Score=35.33 Aligned_cols=105 Identities=10% Similarity=0.093 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCC
Q psy11494 85 VMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDP 164 (197)
Q Consensus 85 vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDp 164 (197)
+|..+.+++|+|-.. .+-...+|..++--+--+|....+..=. .+.+--....-..-+-+|++++..-|...|++|
T Consensus 736 ~~etv~ri~~~lg~~--diderleE~lidgil~Afqeqtt~d~vm--l~gfg~V~~~lg~r~kpylpqi~stiL~rLnnk 811 (1172)
T KOG0213|consen 736 VAETVSRIVGRLGAA--DIDERLEERLIDGILYAFQEQTTEDSVM--LLGFGTVVNALGGRVKPYLPQICSTILWRLNNK 811 (1172)
T ss_pred HHHHHHHHHhccccc--cccHHHHHHHHHHHHHHHHhcccchhhh--hhhHHHHHHHHhhccccchHHHHHHHHHHhcCC
Confidence 666666666655432 1233345555555554455544444200 011111112222334678999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhhcchhhhhc
Q psy11494 165 KPEIRLHAVKAIRAALVVTAQRESAKQSQ 193 (197)
Q Consensus 165 k~~iRe~Aa~aL~~cL~ii~~Re~~~~~~ 193 (197)
++.+|..|++..+-.-.+++.-...+...
T Consensus 812 sa~vRqqaadlis~la~Vlktc~ee~~m~ 840 (1172)
T KOG0213|consen 812 SAKVRQQAADLISSLAKVLKTCGEEKLMG 840 (1172)
T ss_pred ChhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999988876555443
No 55
>KOG1241|consensus
Probab=88.70 E-value=20 Score=36.05 Aligned_cols=171 Identities=16% Similarity=0.171 Sum_probs=102.2
Q ss_pred HHHHHhhhhCHHHHHHHHHHHHHHHHHHhhCCc----hhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhC-CCCCh
Q psy11494 9 MVRTELREVTVEEVTAFTDAFNHHIFEMVSAND----VNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLL-PSNDI 83 (197)
Q Consensus 9 ~v~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d----~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l-~~~D~ 83 (197)
++.+..|-+.. .+....+++-..++.+++|++ ..|-+++|.++...++ ..-......|.-||..-| ...|.
T Consensus 578 ~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg---~~F~kym~~f~pyL~~gL~n~~e~ 653 (859)
T KOG1241|consen 578 TLQSIIRKVGS-DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLG---KGFAKYMPAFKPYLLMGLSNFQEY 653 (859)
T ss_pred HHHHHHHHccc-cchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHh---HhHHHHHHHHHHHHHHHhhcchHH
Confidence 44445555554 555566666666666666522 2445555555544443 333456778888888888 57899
Q ss_pred hHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCC-cchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHh---
Q psy11494 84 GVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDR-VEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFS--- 159 (197)
Q Consensus 84 ~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r-~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~--- 159 (197)
+|.-.|-...|.|++.=++-.--|-+.-+..-+..|+++. .++=|-+=.-+--.+|.+-.--|-+|+..+..-.-.
T Consensus 654 qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~ 733 (859)
T KOG1241|consen 654 QVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASS 733 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 9999999999999995444333344555677777777543 233333334444566666666666666554443332
Q ss_pred hhcCC--------cHHHHHHHHHHHHHHHHHH
Q psy11494 160 AVRDP--------KPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 160 aLrDp--------k~~iRe~Aa~aL~~cL~ii 183 (197)
+--|| -..+|++..+|....+.=+
T Consensus 734 ~~~d~~~~~~~dYvd~LRe~~leay~gi~qgl 765 (859)
T KOG1241|consen 734 VQTDPADDSMVDYVDELREGILEAYTGIIQGL 765 (859)
T ss_pred ccCCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23444 2356777777665544433
No 56
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=88.54 E-value=4.7 Score=32.42 Aligned_cols=84 Identities=14% Similarity=0.180 Sum_probs=67.4
Q ss_pred hhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCC-chhHhhhhHHHHHHHhhhcCC-cHHHHHHHHHHHHHHHH
Q psy11494 104 SAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVP-TIFYQHVQAFFDFVFSAVRDP-KPEIRLHAVKAIRAALV 181 (197)
Q Consensus 104 ~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naP-t~~~~~v~~~~d~Iw~aLrDp-k~~iRe~Aa~aL~~cL~ 181 (197)
...-+.+-+.|....|++ +....|.+|+.+++.+..+.| ..|-.+-.+++..+-..|..| ...+.+.|..+|...+.
T Consensus 19 ~~~~l~~l~~ri~~LL~s-~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQS-KSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred CHHHHHHHHHHHHHHhCC-CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 455777788888888876 557778999999999999984 455599999999999999887 55678899999888887
Q ss_pred HHhhcch
Q psy11494 182 VTAQRES 188 (197)
Q Consensus 182 ii~~Re~ 188 (197)
.+.....
T Consensus 98 ~~~~~p~ 104 (165)
T PF08167_consen 98 LIRGKPT 104 (165)
T ss_pred HhcCCCc
Confidence 7765543
No 57
>KOG0414|consensus
Probab=88.17 E-value=5.9 Score=41.37 Aligned_cols=109 Identities=23% Similarity=0.287 Sum_probs=88.0
Q ss_pred hhhhHHHHHHHhhhCC----CCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHH
Q psy11494 64 NSRNIRFANYLRNLLP----SNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELA 139 (197)
Q Consensus 64 ~~~~~rf~~yL~~~l~----~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa 139 (197)
.+.+.||+..+..+.. .+|+++-..|.-+|||+.-. .++|-++...--+--+......--|-=+|+-|--||
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i----Sa~fces~l~llftimeksp~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI----SAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLA 989 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHhcCCCceeeecchheccchh
Confidence 5668899999987763 46899999999999999864 688888888877777776565556666777888899
Q ss_pred hhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 140 VTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 140 ~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
-.=|+++-++. ++++.-|+|+++.||+.|...|+..+
T Consensus 990 v~fpnlie~~T----~~Ly~rL~D~~~~vRkta~lvlshLI 1026 (1251)
T KOG0414|consen 990 VRFPNLIEPWT----EHLYRRLRDESPSVRKTALLVLSHLI 1026 (1251)
T ss_pred hhcccccchhh----HHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 88888877665 45677899999999999999988643
No 58
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=88.06 E-value=0.92 Score=33.49 Aligned_cols=54 Identities=24% Similarity=0.257 Sum_probs=42.8
Q ss_pred chhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 125 EGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 125 e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
..+||+|||-|-.+...-|..+=++++.++..+=.-..| ...|+.++-++|+.-
T Consensus 3 ~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eF 56 (90)
T PF11919_consen 3 LRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEF 56 (90)
T ss_dssp -HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHH
Confidence 468999999999999999999999999999998888888 568888888888753
No 59
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=87.66 E-value=24 Score=32.95 Aligned_cols=157 Identities=10% Similarity=0.154 Sum_probs=100.0
Q ss_pred HHHHHHHHHhhC-CchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 28 AFNHHIFEMVSA-NDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 28 ~l~~~I~~L~~s-~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
.+-++++.+..+ ++..+-.+++..+|+++.++.. ....++.+...|-.+.... ++-+.+-+++=.|++. ..+..
T Consensus 176 ~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~i-P~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S--~~g~~ 250 (464)
T PF11864_consen 176 SLVDQICTICKSTSSEDDIEACLSVLDAIITYGDI-PSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKS--HLGHS 250 (464)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcC-ChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcC--ccHHH
Confidence 344667777644 4445567999999999987532 3445777888887776555 6668888888888863 12222
Q ss_pred hHHHHHHHHHhhhcCCCcchhh-----HHHHHHHHHHHhhCCchhHhh--hhH--HHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 107 YADFEMKKAIEWLGGDRVEGKR-----HAAVLVLKELAVTVPTIFYQH--VQA--FFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 107 ~Ve~ev~~AlewL~~~r~e~rR-----~AAvLvLrELa~naPt~~~~~--v~~--~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
. +..-++.|.++...+++ --||.+|+.+.-..+.--++. ... +++.+..+++-++..| +.+.+.
T Consensus 251 ~----i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v---~~eIl~ 323 (464)
T PF11864_consen 251 A----IRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRV---DYEILL 323 (464)
T ss_pred H----HHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCee---hHHHHH
Confidence 2 33344555333222222 268889999888874444433 344 8899999999777765 446666
Q ss_pred HHHHHHhhcchhhhhcCCCC
Q psy11494 178 AALVVTAQRESAKQSQKPQW 197 (197)
Q Consensus 178 ~cL~ii~~Re~~~~~~~~~~ 197 (197)
.|..++. ++-.+.-+.+.|
T Consensus 324 ~i~~ll~-~~~~~~l~~~~W 342 (464)
T PF11864_consen 324 LINRLLD-GKYGRELSEEDW 342 (464)
T ss_pred HHHHHHh-HhhhhhhcccCc
Confidence 6666765 444444555555
No 60
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=87.51 E-value=7.4 Score=29.51 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 27 DAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 27 ~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
+.+++.+.+.=...+..||+.+|.||..||...++....-..+..-.|+..|..+ ++-..|=++|.-+++. +..+
T Consensus 14 ~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~~i~~---L~~~ 88 (107)
T smart00802 14 AVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHVLIKT---LKEE 88 (107)
T ss_pred HHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHHh---CCHH
Confidence 3344333333333577999999999999999865554444555566666666544 4667777888877773 3334
Q ss_pred hHHHHHHHH
Q psy11494 107 YADFEMKKA 115 (197)
Q Consensus 107 ~Ve~ev~~A 115 (197)
-++.-++.-
T Consensus 89 ~l~~ll~~~ 97 (107)
T smart00802 89 ELGPLLDQI 97 (107)
T ss_pred HHHHHHHHH
Confidence 444444433
No 61
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.42 E-value=4.5 Score=35.56 Aligned_cols=74 Identities=22% Similarity=0.253 Sum_probs=53.4
Q ss_pred HHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchh---hHHHHHHHHHHHhhCCc
Q psy11494 70 FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGK---RHAAVLVLKELAVTVPT 144 (197)
Q Consensus 70 f~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~r---R~AAvLvLrELa~naPt 144 (197)
|..+++ .+..+|..+...|+..++.|+..++......++..++.-+.||...-.... ...|+-.|.+|++.-+.
T Consensus 107 ~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~ 183 (312)
T PF03224_consen 107 YSPFLK-LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEY 183 (312)
T ss_dssp HHHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHH
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchh
Confidence 444454 778889999999999999999998887777778888999999986333222 37888888888876544
No 62
>KOG1241|consensus
Probab=87.35 E-value=28 Score=35.10 Aligned_cols=173 Identities=16% Similarity=0.181 Sum_probs=119.3
Q ss_pred HHHHHHHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcch---hh--------hHHHHHHHh
Q psy11494 7 ASMVRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVN---SR--------NIRFANYLR 75 (197)
Q Consensus 7 ~~~v~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~---~~--------~~rf~~yL~ 75 (197)
+..-+....+.+.++|.+|...+..-+-+ -++++.....+|+.-=+.|..=|..-.. ++ -..--+++.
T Consensus 18 ~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n-~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il 96 (859)
T KOG1241|consen 18 RKRAEKQLEQAQSQNFPQFLVLLSEVLAN-DNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNIL 96 (859)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc-cCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445667778888899998877644333 3556656677888777777644321111 11 122345566
Q ss_pred hhCCCCChhHHHHHHHHHHHhhhc--cCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhh-CCchhHhhhhH
Q psy11494 76 NLLPSNDIGVMRYAAKTVGKLAQI--SGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVT-VPTIFYQHVQA 152 (197)
Q Consensus 76 ~~l~~~D~~vm~~AA~~lG~L~~~--gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~n-aPt~~~~~v~~ 152 (197)
+.|-+..+.....||.++|.+|.. +-..--++++..+.. ...+...+-|-+.+.-|-.++.. .|-++-.+.+.
T Consensus 97 ~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~n----v~~~~~~~~k~~slealGyice~i~pevl~~~sN~ 172 (859)
T KOG1241|consen 97 RTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSN----VGEEQASMVKESSLEALGYICEDIDPEVLEQQSND 172 (859)
T ss_pred HHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHh----cccccchHHHHHHHHHHHHHHccCCHHHHHHHHhH
Confidence 667778888999999999999973 222333444333222 12333446677888888888888 78899999999
Q ss_pred HHHHHHhhhcC--CcHHHHHHHHHHHHHHHHHHh
Q psy11494 153 FFDFVFSAVRD--PKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 153 ~~d~Iw~aLrD--pk~~iRe~Aa~aL~~cL~ii~ 184 (197)
++..|=-+.|- |+..||-+|..||-.||..+.
T Consensus 173 iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~ 206 (859)
T KOG1241|consen 173 ILTAIVQGMRKEETSAAVRLAALNALYNSLEFTK 206 (859)
T ss_pred HHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH
Confidence 99998877774 799999999999999999887
No 63
>KOG1943|consensus
Probab=86.40 E-value=7.2 Score=40.38 Aligned_cols=109 Identities=23% Similarity=0.240 Sum_probs=77.4
Q ss_pred chhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhh-
Q psy11494 63 VNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVT- 141 (197)
Q Consensus 63 ~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~n- 141 (197)
.+.-+-.+...|...+...|..|-=-|||-+|++... ++.++++.=|+.-++.+..-..++-=|-|+|+|-|||..
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~r---lp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSR---LPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHcc---CcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 4444556677777778889999999999999999874 457777777777888443323466778999999999998
Q ss_pred --CCchhHhhhhHHHHHHHhhh----cCCcHHHHHHHHH
Q psy11494 142 --VPTIFYQHVQAFFDFVFSAV----RDPKPEIRLHAVK 174 (197)
Q Consensus 142 --aPt~~~~~v~~~~d~Iw~aL----rDpk~~iRe~Aa~ 174 (197)
-|+.+-.-++-+...+.--. +..-..||++|.=
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY 450 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACY 450 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHH
Confidence 56666555555554443322 2346789988753
No 64
>KOG0915|consensus
Probab=86.14 E-value=11 Score=40.42 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhhCCch-hHHHHHHHHHHHHh-hcCCCcchhhhHHHHHHHhhhCCC---CChhHHHHHHHHHHHhhhccC
Q psy11494 27 DAFNHHIFEMVSANDV-NEKKSGIIAIVCLL-HVDVGNVNSRNIRFANYLRNLLPS---NDIGVMRYAAKTVGKLAQISG 101 (197)
Q Consensus 27 ~~l~~~I~~L~~s~d~-~eklggI~aId~Li-~~~~~~~~~~~~rf~~yL~~~l~~---~D~~vm~~AA~~lG~L~~~gG 101 (197)
.++-.++.+++.|+-. .-|-|...-|-.|. .+. .| ..+-...|++-++|+ ....+-+.=|-++|+|++.+
T Consensus 1234 eelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~-~e---mtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~S- 1308 (1702)
T KOG0915|consen 1234 EELIPRLTELVRGSVGLGTKVGCASFISLLVQRLG-SE---MTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFS- 1308 (1702)
T ss_pred HHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhc-cc---cCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcC-
Confidence 3455788899976554 33555555554443 222 22 234566778888885 36788888899999999863
Q ss_pred cchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCC
Q psy11494 102 TFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDP 164 (197)
Q Consensus 102 ~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDp 164 (197)
..|=.++.++.-+.|+-+++...+..+=..+.. ++.++|+.+-.|...|+..|+.+-.+-
T Consensus 1309 --s~dq~qKLie~~l~~~l~k~es~~siscatis~-Ian~s~e~Lkn~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1309 --SPDQMQKLIETLLADLLGKDESLKSISCATISN-IANYSQEMLKNYASAILPLIFLAMHEE 1368 (1702)
T ss_pred --ChHHHHHHHHHHHHHHhccCCCccchhHHHHHH-HHHhhHHHHHhhHHHHHHHHHHHHhHH
Confidence 345677888888999987666665554445555 999999999999999999888776554
No 65
>PTZ00429 beta-adaptin; Provisional
Probab=85.88 E-value=41 Score=33.79 Aligned_cols=103 Identities=16% Similarity=0.140 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH---HHHHHhhhcCC
Q psy11494 46 KSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE---MKKAIEWLGGD 122 (197)
Q Consensus 46 lggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e---v~~AlewL~~~ 122 (197)
-|=+..++.|......+ ......+.+.+...|.+.+..|+-.|++++=++.... ..+.++.- ++.++=-|. .
T Consensus 234 W~Qi~IL~lL~~y~P~~-~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~---~~~~~~~~~~rl~~pLv~L~-s 308 (746)
T PTZ00429 234 WGQLYILELLAAQRPSD-KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC---SQELIERCTVRVNTALLTLS-R 308 (746)
T ss_pred HHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC---CHHHHHHHHHHHHHHHHHhh-C
Confidence 44556677776543222 2334567777777788888999999999998887542 23444433 334444453 3
Q ss_pred CcchhhHHHHHHHHHHHhhCCchhHhhhhHH
Q psy11494 123 RVEGKRHAAVLVLKELAVTVPTIFYQHVQAF 153 (197)
Q Consensus 123 r~e~rR~AAvLvLrELa~naPt~~~~~v~~~ 153 (197)
...+-+|.++--|..++...|.+|-+++..|
T Consensus 309 s~~eiqyvaLr~I~~i~~~~P~lf~~~~~~F 339 (746)
T PTZ00429 309 RDAETQYIVCKNIHALLVIFPNLLRTNLDSF 339 (746)
T ss_pred CCccHHHHHHHHHHHHHHHCHHHHHHHHHhh
Confidence 4567899999999999999999998875433
No 66
>KOG1824|consensus
Probab=85.30 E-value=29 Score=36.01 Aligned_cols=147 Identities=14% Similarity=0.152 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHh----hcCCCcchhhhHHHHHHHhhhCCCC-Ch---hHHH----
Q psy11494 20 EEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLL----HVDVGNVNSRNIRFANYLRNLLPSN-DI---GVMR---- 87 (197)
Q Consensus 20 e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li----~~~~~~~~~~~~rf~~yL~~~l~~~-D~---~vm~---- 87 (197)
-...+..+.+-+.|..+++||-. +.|+..+.--+. ..+..+ +- |.+.++.+.... +. .+-+
T Consensus 726 s~l~~~~~~iL~~ii~ll~Spll--qg~al~~~l~~f~alV~t~~~~----l~-y~~l~s~lt~PV~~~~~~~l~kqa~~ 798 (1233)
T KOG1824|consen 726 SSLLKISNPILDEIIRLLRSPLL--QGGALSALLLFFQALVITKEPD----LD-YISLLSLLTAPVYEQVTDGLHKQAYY 798 (1233)
T ss_pred HHHHHHhhhhHHHHHHHhhCccc--cchHHHHHHHHHHHHHhcCCCC----cc-HHHHHHHHcCCcccccccchhHHHHH
Confidence 34455666777788889999886 455544443221 112122 11 444444443211 11 1222
Q ss_pred HHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHH
Q psy11494 88 YAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPE 167 (197)
Q Consensus 88 ~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~ 167 (197)
.-|++...|....+....-.+.+-++. ..........|+.|.|.|-|+.++.|+. ..+.+++-|-.++-.|+..
T Consensus 799 siA~cvA~Lt~~~~~~s~s~a~kl~~~---~~s~~s~~~ikvfa~LslGElgr~~~~s---~~~e~~~~iieaf~sp~ed 872 (1233)
T KOG1824|consen 799 SIAKCVAALTCACPQKSKSLATKLIQD---LQSPKSSDSIKVFALLSLGELGRRKDLS---PQNELKDTIIEAFNSPSED 872 (1233)
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHH---HhCCCCchhHHHHHHhhhhhhccCCCCC---cchhhHHHHHHHcCCChHH
Confidence 235555555554433333333333222 2335567889999999999999998875 3456777899999999999
Q ss_pred HHHHHHHHHHHH
Q psy11494 168 IRLHAVKAIRAA 179 (197)
Q Consensus 168 iRe~Aa~aL~~c 179 (197)
|+-+|+-||.+.
T Consensus 873 vksAAs~ALGsl 884 (1233)
T KOG1824|consen 873 VKSAASYALGSL 884 (1233)
T ss_pred HHHHHHHHhhhh
Confidence 999999999864
No 67
>KOG1820|consensus
Probab=84.70 E-value=6.8 Score=39.59 Aligned_cols=115 Identities=14% Similarity=0.065 Sum_probs=94.3
Q ss_pred hHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchh
Q psy11494 67 NIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIF 146 (197)
Q Consensus 67 ~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~ 146 (197)
.+++.-.|..-+.+.|-.=-..|.+.+...+...+.....--..++.+.+.-...|-+-+...=|+..|..+|...++.|
T Consensus 251 ~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~ 330 (815)
T KOG1820|consen 251 LSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF 330 (815)
T ss_pred hhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh
Confidence 34555566667777888888888888888887655333444456677777777778888888889999999999999999
Q ss_pred HhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 147 YQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 147 ~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
++|+..++..++..+.|.+..+|+++..++.+.+.
T Consensus 331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n 365 (815)
T KOG1820|consen 331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN 365 (815)
T ss_pred HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988876
No 68
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=83.88 E-value=8.4 Score=33.81 Aligned_cols=151 Identities=13% Similarity=0.099 Sum_probs=81.5
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCc-ch---hhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcch
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGN-VN---SRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFS 104 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~-~~---~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~ 104 (197)
.+..++.+.+++|..=+.-+...+..|+..+... .. .-+..|.++|+..+.++|.++...|..+++.|++.... -
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~-R 184 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEY-R 184 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHH-H
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchh-H
Confidence 4566777888889888888888888888665333 22 45788999999988888999999999999999986432 2
Q ss_pred hhhHHH-HHHHHHhhh------cCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCC-cHHHHHHHHHHH
Q psy11494 105 AEYADF-EMKKAIEWL------GGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDP-KPEIRLHAVKAI 176 (197)
Q Consensus 105 ~~~Ve~-ev~~AlewL------~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDp-k~~iRe~Aa~aL 176 (197)
.-|++. -++.-..-| .+...-.--|-+++.+--|.-+.+..-...-..++..+...+++. |.=|=.-+..+|
T Consensus 185 ~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l 264 (312)
T PF03224_consen 185 QVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAIL 264 (312)
T ss_dssp HHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHH
Confidence 223332 233444444 222233345666666666655533311111111555555444443 333333344444
Q ss_pred HHHH
Q psy11494 177 RAAL 180 (197)
Q Consensus 177 ~~cL 180 (197)
+.|+
T Consensus 265 ~Nl~ 268 (312)
T PF03224_consen 265 RNLL 268 (312)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 4443
No 69
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=83.81 E-value=1.6 Score=26.64 Aligned_cols=25 Identities=44% Similarity=0.403 Sum_probs=20.7
Q ss_pred HhhhCCCCChhHHHHHHHHHHHhhh
Q psy11494 74 LRNLLPSNDIGVMRYAAKTVGKLAQ 98 (197)
Q Consensus 74 L~~~l~~~D~~vm~~AA~~lG~L~~ 98 (197)
|-.+|.+.|.++.+.|++++|.|+.
T Consensus 17 Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 17 LVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4445558999999999999999874
No 70
>KOG0213|consensus
Probab=83.75 E-value=7.7 Score=39.22 Aligned_cols=63 Identities=13% Similarity=0.268 Sum_probs=58.7
Q ss_pred CCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q psy11494 121 GDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 121 ~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii 183 (197)
+-+++..||.++-+.+++|.-..-.+.+|+..+.+.|=.+|.|-+.-||..+|.|+++..+..
T Consensus 522 SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa 584 (1172)
T KOG0213|consen 522 SKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAA 584 (1172)
T ss_pred cccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhc
Confidence 445889999999999999999999999999999999999999999999999999999987654
No 71
>KOG2023|consensus
Probab=82.63 E-value=22 Score=35.61 Aligned_cols=155 Identities=9% Similarity=0.082 Sum_probs=109.4
Q ss_pred hHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChh
Q psy11494 5 TGASMVRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIG 84 (197)
Q Consensus 5 ~~~~~v~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~ 84 (197)
.++..-+..+..+..|-.++.+|-+-.+.++.++.+.+.=|.-++-++++.|=.........+-+|...|-.+-...|++
T Consensus 151 AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~e 230 (885)
T KOG2023|consen 151 ALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPE 230 (885)
T ss_pred HHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHH
Confidence 35555666667777777788999999999999988888667788999998886553333333445555555554567899
Q ss_pred HHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhh---cCCCcchhhHHHHHHHHHHHhh--CCchhHhhhhHHHHHHHh
Q psy11494 85 VMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWL---GGDRVEGKRHAAVLVLKELAVT--VPTIFYQHVQAFFDFVFS 159 (197)
Q Consensus 85 vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL---~~~r~e~rR~AAvLvLrELa~n--aPt~~~~~v~~~~d~Iw~ 159 (197)
|-+.-..++-.|.-. -.|=....+...+|++ -.+-.|+=-+-||=+.-.+|++ .++++-+|++++..-+..
T Consensus 231 VRk~vC~alv~Llev----r~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~ 306 (885)
T KOG2023|consen 231 VRKNVCRALVFLLEV----RPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLS 306 (885)
T ss_pred HHHHHHHHHHHHHHh----cHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHc
Confidence 999999999888742 1222223344444444 1355677777899999999998 677899999998888777
Q ss_pred hhcC
Q psy11494 160 AVRD 163 (197)
Q Consensus 160 aLrD 163 (197)
.++=
T Consensus 307 ~M~Y 310 (885)
T KOG2023|consen 307 GMVY 310 (885)
T ss_pred cCcc
Confidence 6653
No 72
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=81.31 E-value=18 Score=35.63 Aligned_cols=122 Identities=20% Similarity=0.234 Sum_probs=72.4
Q ss_pred HHHHhhCCchhHHHHH-HHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH
Q psy11494 33 IFEMVSANDVNEKKSG-IIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE 111 (197)
Q Consensus 33 I~~L~~s~d~~eklgg-I~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e 111 (197)
.+.++.+.+..-..|- .+||..|-.--+..-....++|.-||.+.|.+.|..|.-.|-...|.|++.-|+----|-+--
T Consensus 602 f~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ 681 (858)
T COG5215 602 FIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVL 681 (858)
T ss_pred HHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3444444433222232 345555542111123456778999999999999999999999999999996554332233444
Q ss_pred HHHHHhhhcCC-CcchhhHHHHHHHHHHHhhCCchhHhhhhHHH
Q psy11494 112 MKKAIEWLGGD-RVEGKRHAAVLVLKELAVTVPTIFYQHVQAFF 154 (197)
Q Consensus 112 v~~AlewL~~~-r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~ 154 (197)
..+-...|+++ -.++-|-|=.-+.-.+|.+-..-|-+|++.+.
T Consensus 682 ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im 725 (858)
T COG5215 682 MSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIM 725 (858)
T ss_pred HHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44555555532 23334455555666777777777777755443
No 73
>KOG2160|consensus
Probab=81.13 E-value=43 Score=30.64 Aligned_cols=146 Identities=14% Similarity=0.187 Sum_probs=99.4
Q ss_pred HHHHh-hCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHH--HhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHH
Q psy11494 33 IFEMV-SANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANY--LRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYAD 109 (197)
Q Consensus 33 I~~L~-~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~y--L~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve 109 (197)
+..+- +|.|..+|.+++-=|..|++- .|+++.+..+... |-..+...|.++-..||+|+|..+..--..+..+.|
T Consensus 87 ~~~~~~~s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E 164 (342)
T KOG2160|consen 87 IVILNSSSVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIE 164 (342)
T ss_pred hhccCcccCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 33444 678899999988888777632 3555555554432 333677889999999999999999864334444554
Q ss_pred HH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHh--hhhHHHHHHHhhhcC--CcHHHHHHHHHHHHHHHH
Q psy11494 110 FE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQ--HVQAFFDFVFSAVRD--PKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 110 ~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~--~v~~~~d~Iw~aLrD--pk~~iRe~Aa~aL~~cL~ 181 (197)
.= ...-+.-|..+.....|-.|..-+.-|-+|-|--.-. .++. +..+-.++-+ .++..+.-|+..++..+.
T Consensus 165 ~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 165 LGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 33 2233345567888888999999999999996653333 3444 5666777777 577777778887776664
No 74
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=80.81 E-value=6.2 Score=31.48 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCc--chhhhHHHHHHHhhhCC--CCChhHHHHHHHHHHHhhhcc
Q psy11494 25 FTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGN--VNSRNIRFANYLRNLLP--SNDIGVMRYAAKTVGKLAQIS 100 (197)
Q Consensus 25 ~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~--~~~~~~rf~~yL~~~l~--~~D~~vm~~AA~~lG~L~~~g 100 (197)
|.+.+..-|..++..++..+++.++.++.+|.....+- .--.-..|-..+...+. ++|..+...+.+++..=+..
T Consensus 40 ~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d- 118 (157)
T PF11701_consen 40 FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID- 118 (157)
T ss_dssp HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-
Confidence 55556666777777777778999999999998664211 11111246677777776 78999999999998765543
Q ss_pred CcchhhhHHHHHHHHHhhhcC----CCcch-hhHHHHHHH
Q psy11494 101 GTFSAEYADFEMKKAIEWLGG----DRVEG-KRHAAVLVL 135 (197)
Q Consensus 101 G~~~~~~Ve~ev~~AlewL~~----~r~e~-rR~AAvLvL 135 (197)
.+.-++=.+.+++||.. +..+. -|..|+++|
T Consensus 119 ----~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 119 ----KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp ----HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 23333446778899962 23333 466666665
No 75
>KOG2956|consensus
Probab=80.70 E-value=55 Score=31.37 Aligned_cols=136 Identities=18% Similarity=0.164 Sum_probs=87.9
Q ss_pred chhHHHHHHHHHHHHhhcCCCcchhhhH-HHHHHHhhhCC----CCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHH
Q psy11494 41 DVNEKKSGIIAIVCLLHVDVGNVNSRNI-RFANYLRNLLP----SNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKA 115 (197)
Q Consensus 41 d~~eklggI~aId~Li~~~~~~~~~~~~-rf~~yL~~~l~----~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~A 115 (197)
...++.+|+.-|-.++-.++.. .+. -|+..|..++. +.|...-+.|=++++++++.-.+.--|.+|--|..-
T Consensus 300 ~a~~~k~alsel~~m~~e~sfs---vWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~ 376 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFS---VWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKV 376 (516)
T ss_pred chhHHHHHHHHHHHHHHccchh---HHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHH
Confidence 4567788888777777544222 122 25555554443 357777788889999999875554444444322222
Q ss_pred Hhhh-------------------cCC--------------CcchhhHHHHH-HHHHHHhhCCc-hhHhhhhHHHHHHHhh
Q psy11494 116 IEWL-------------------GGD--------------RVEGKRHAAVL-VLKELAVTVPT-IFYQHVQAFFDFVFSA 160 (197)
Q Consensus 116 lewL-------------------~~~--------------r~e~rR~AAvL-vLrELa~naPt-~~~~~v~~~~d~Iw~a 160 (197)
||-= ... .-+..|..+|+ ++++|.+.-+- ...+.++.|...+..|
T Consensus 377 Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqa 456 (516)
T KOG2956|consen 377 LEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQA 456 (516)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHH
Confidence 2211 000 02334444555 88999999777 7788899999999999
Q ss_pred hcCCcHHHHHHHHHHHHHH
Q psy11494 161 VRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 161 LrDpk~~iRe~Aa~aL~~c 179 (197)
--.++..||.+|+=+|=+.
T Consensus 457 y~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 457 YDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred hcCchHHhhhhHHHhHHHH
Confidence 9999999999998644443
No 76
>KOG0392|consensus
Probab=80.57 E-value=21 Score=37.91 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCc-ch----hhhHHHHHHHhh------hCCCCChhHHHHHH
Q psy11494 22 VTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGN-VN----SRNIRFANYLRN------LLPSNDIGVMRYAA 90 (197)
Q Consensus 22 ~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~-~~----~~~~rf~~yL~~------~l~~~D~~vm~~AA 90 (197)
|..|..++- +.+-++.-+-+-||.+|+-.+....+.. +. ..++||..-+.- +.++.=..|-+.-|
T Consensus 75 f~s~~e~L~----~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~ca 150 (1549)
T KOG0392|consen 75 FLSFLEELV----NDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACA 150 (1549)
T ss_pred HHHHHHHHH----HHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHH
Confidence 444444443 2233444455778888888887665433 11 112232222210 01223346778889
Q ss_pred HHHHHhhhcc-CcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHH
Q psy11494 91 KTVGKLAQIS-GTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIR 169 (197)
Q Consensus 91 ~~lG~L~~~g-G~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iR 169 (197)
++||.+.++- -++..++++. +..+......+.|+.+.+.+|+..--=-..++...+.+++.+-..|-|+..-+|
T Consensus 151 q~L~~~l~~~~~s~~~~~~~i-----l~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~ 225 (1549)
T KOG0392|consen 151 QALGAYLKHMDESLIKETLDI-----LLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVR 225 (1549)
T ss_pred HHHHHHHHhhhhHhhHHHHHH-----HHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHH
Confidence 9999998751 1122222222 222222337788999999998765533335557788999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy11494 170 LHAVKAIRAALVVTAQ 185 (197)
Q Consensus 170 e~Aa~aL~~cL~ii~~ 185 (197)
..|+..|--...+.-.
T Consensus 226 ~~aa~~l~~~~s~~v~ 241 (1549)
T KOG0392|consen 226 SVAAQFLVPAPSIQVK 241 (1549)
T ss_pred HHHHHHhhhhhHHHHh
Confidence 9999988877776633
No 77
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=80.17 E-value=13 Score=27.53 Aligned_cols=73 Identities=5% Similarity=-0.046 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHH-HHHHhhhCCCCChhHHHHHHHHHHHh
Q psy11494 24 AFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRF-ANYLRNLLPSNDIGVMRYAAKTVGKL 96 (197)
Q Consensus 24 ~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf-~~yL~~~l~~~D~~vm~~AA~~lG~L 96 (197)
++..++-+.|.+-++...+..|+++++.+|.++.-........+..| .+.+..++...|.++...--++++-+
T Consensus 33 ~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW 106 (114)
T cd03562 33 KHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIW 106 (114)
T ss_pred HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 45556666677878777778999999999999865434434444444 66666667777888877666666544
No 78
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=79.69 E-value=68 Score=31.85 Aligned_cols=168 Identities=15% Similarity=0.195 Sum_probs=109.9
Q ss_pred HHHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh-----------HHHHHHHhhhCC
Q psy11494 11 RTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN-----------IRFANYLRNLLP 79 (197)
Q Consensus 11 ~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~-----------~rf~~yL~~~l~ 79 (197)
++...+++..+|.+|+.-+.+-+-++ +|++--.-..|+.-=+.|+.-|..-....- ...-....+.|.
T Consensus 26 E~ql~~l~~~dF~qf~~ll~qvl~d~-ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~ 104 (858)
T COG5215 26 EAQLLELQSGDFEQFISLLVQVLCDL-NSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALK 104 (858)
T ss_pred HHHHHHhccccHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhc
Confidence 56778899999999998776554443 455544445666666677644421111100 111222345577
Q ss_pred CCChhHHHHHHHHHHHhhhc--cCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhh-CCchhHhhhhHHHHH
Q psy11494 80 SNDIGVMRYAAKTVGKLAQI--SGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVT-VPTIFYQHVQAFFDF 156 (197)
Q Consensus 80 ~~D~~vm~~AA~~lG~L~~~--gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~n-aPt~~~~~v~~~~d~ 156 (197)
+..+.....||..+|.+++. +.+.-.++.+.-+.. ...+-.++.+-++++++-..+.. +|-.+.+.-+.++-.
T Consensus 105 s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~n----vg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~a 180 (858)
T COG5215 105 SPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRN----VGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFA 180 (858)
T ss_pred CCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHh----ccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHH
Confidence 88999999999999999974 334445555443322 34566788899999999999988 885555555554444
Q ss_pred -HHhhhc-CCcHHHHHHHHHHHHHHHHHH
Q psy11494 157 -VFSAVR-DPKPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 157 -Iw~aLr-Dpk~~iRe~Aa~aL~~cL~ii 183 (197)
...+++ .|...+|-+|..||-.-|.-+
T Consensus 181 iv~ga~k~et~~avRLaaL~aL~dsl~fv 209 (858)
T COG5215 181 IVMGALKNETTSAVRLAALKALMDSLMFV 209 (858)
T ss_pred HHHhhcccCchHHHHHHHHHHHHHHHHHH
Confidence 556665 468999999999999855444
No 79
>KOG2933|consensus
Probab=79.21 E-value=14 Score=33.57 Aligned_cols=143 Identities=15% Similarity=0.168 Sum_probs=94.7
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHH
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYAD 109 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve 109 (197)
-...+..+.|.|-..+.-|+--|.+|..|+......++-.-.-.+-+-+......|.+.|..|+|-+...=++ .+.+
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~---~i~~ 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN---SIDQ 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 3456777888998899999999999999986554444444333334444556889999999999999875322 2222
Q ss_pred HHHHHHHhhhcCC-Ccchh--hHHHHHHHHHHHhh-CCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q psy11494 110 FEMKKAIEWLGGD-RVEGK--RHAAVLVLKELAVT-VPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 110 ~ev~~AlewL~~~-r~e~r--R~AAvLvLrELa~n-aPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii 183 (197)
+.+..+--|-.- ...+| |-+|--.|..+..+ +|... +..+-..+++.+..+|..|+..+..|-.-+
T Consensus 167 -~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~-------L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl 236 (334)
T KOG2933|consen 167 -ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKL-------LRKLIPILQHSNPRVRAKAALCFSRCVIRL 236 (334)
T ss_pred -HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHH-------HHHHHHHHhhhchhhhhhhhccccccceec
Confidence 666666555432 22222 33444555555555 45444 444556688899999999999888886554
No 80
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=78.80 E-value=18 Score=28.08 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccC
Q psy11494 64 NSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISG 101 (197)
Q Consensus 64 ~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG 101 (197)
.+.+.....||.+-|..+++.|..++=+++-+|+..|+
T Consensus 33 ~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 33 VGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 44477899999999998999999999999999999874
No 81
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=78.58 E-value=32 Score=29.79 Aligned_cols=75 Identities=13% Similarity=0.106 Sum_probs=53.6
Q ss_pred CchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHh
Q psy11494 40 NDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIE 117 (197)
Q Consensus 40 ~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~Ale 117 (197)
-|...++.|+-++..|- +. .+....+.+....|-.+|.+++..+=..+-+++-.|+..+ .++.|++..++-..+-
T Consensus 107 lns~~Q~agLrlL~nLt-v~-~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np-~~~~~Ll~~q~~~~~~ 181 (254)
T PF04826_consen 107 LNSEVQLAGLRLLTNLT-VT-NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP-DMTRELLSAQVLSSFL 181 (254)
T ss_pred CCCHHHHHHHHHHHccC-CC-cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH-HHHHHHHhccchhHHH
Confidence 36677889988888773 22 2334455666666777788888888888999999998754 6778888877654443
No 82
>KOG1824|consensus
Probab=77.86 E-value=26 Score=36.41 Aligned_cols=152 Identities=17% Similarity=0.182 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcC-----------CCcchhhhHHHHHHHhhhCC--CCChhHHHHHHHH
Q psy11494 26 TDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVD-----------VGNVNSRNIRFANYLRNLLP--SNDIGVMRYAAKT 92 (197)
Q Consensus 26 ~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~-----------~~~~~~~~~rf~~yL~~~l~--~~D~~vm~~AA~~ 92 (197)
-+++..-|.+-++||...=|.++-+|+..+---. +...+-+-.=+.+.|+.++. +.| ..-..+-+.
T Consensus 855 ~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd-~~~~~v~~I 933 (1233)
T KOG1824|consen 855 QNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVD-GLKPYVEKI 933 (1233)
T ss_pred chhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccc-hhhhhHHHH
Confidence 3455567888899988777888888888774211 01111112223444455543 223 222334455
Q ss_pred HHHhhhccCcchhhhHHHHHHHHHhhhc---------------CCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHH
Q psy11494 93 VGKLAQISGTFSAEYADFEMKKAIEWLG---------------GDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFV 157 (197)
Q Consensus 93 lG~L~~~gG~~~~~~Ve~ev~~AlewL~---------------~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~I 157 (197)
||-|-++.+. ..|+...-|-.|++-|- .....+-|..+|-..|-...--|--+-+++.++++.-
T Consensus 934 W~lL~k~cE~-~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~f 1012 (1233)
T KOG1824|consen 934 WALLFKHCEC-AEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDF 1012 (1233)
T ss_pred HHHHHHhccc-chhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHH
Confidence 6666555322 23333444444444332 2234455666666666555566777777788899999
Q ss_pred HhhhcCCcHHHHHHHHHHHHHH
Q psy11494 158 FSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 158 w~aLrDpk~~iRe~Aa~aL~~c 179 (197)
..++|||...||..|..++..+
T Consensus 1013 l~~~~dpDl~VrrvaLvv~nSa 1034 (1233)
T KOG1824|consen 1013 LKLLRDPDLEVRRVALVVLNSA 1034 (1233)
T ss_pred HHHHhCCchhHHHHHHHHHHHH
Confidence 9999999999999999888643
No 83
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=77.73 E-value=4 Score=23.53 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=22.6
Q ss_pred HHHhhhCCCCChhHHHHHHHHHHHhhhc
Q psy11494 72 NYLRNLLPSNDIGVMRYAAKTVGKLAQI 99 (197)
Q Consensus 72 ~yL~~~l~~~D~~vm~~AA~~lG~L~~~ 99 (197)
..+..++...|.+|=..|++++|.++..
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 4566777788999999999999999863
No 84
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=77.52 E-value=4.9 Score=29.94 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=36.8
Q ss_pred CchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 143 PTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 143 Pt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
|..+-+|++.+.-.|-.|+-+-.+.||++|...|..+|+.
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~ 41 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEH 41 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHH
Confidence 6678899999999999999999999999999999988865
No 85
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=77.36 E-value=40 Score=29.36 Aligned_cols=102 Identities=19% Similarity=0.190 Sum_probs=62.2
Q ss_pred HHHHHhhhhCHHHHHHHHHHHH----HHHHHHhhCCchhH--HHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCC
Q psy11494 9 MVRTELREVTVEEVTAFTDAFN----HHIFEMVSANDVNE--KKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSND 82 (197)
Q Consensus 9 ~v~~~~re~s~e~~~~~~~~l~----~~I~~L~~s~d~~e--klggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D 82 (197)
++....-|...|.+.+.+..+. ..|.+++.+++.++ |.+++-|+.+|...+......-+.-|..++..-+..++
T Consensus 88 ~~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~ 167 (249)
T PF06685_consen 88 FLEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNP 167 (249)
T ss_pred hHHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCc
Confidence 4445555666777777666664 46899998888655 66788888888877655544333444444444444343
Q ss_pred hhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHh
Q psy11494 83 IGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIE 117 (197)
Q Consensus 83 ~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~Ale 117 (197)
.. ++|-|+..--.+..+=.-.+|+++++
T Consensus 168 ~~-------~~~~Lv~~~~dL~~~EL~~~I~~~f~ 195 (249)
T PF06685_consen 168 SF-------LWGSLVADICDLYPEELLPEIRKAFE 195 (249)
T ss_pred hH-------HHHHHHHHHHhcCHHHhHHHHHHHHH
Confidence 33 77777764333444444456777764
No 86
>KOG1248|consensus
Probab=76.26 E-value=1.1e+02 Score=32.38 Aligned_cols=146 Identities=12% Similarity=0.075 Sum_probs=104.1
Q ss_pred HHHHh-hCCchhHHHHHHHHHHHHhhcCCCc--chhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHH
Q psy11494 33 IFEMV-SANDVNEKKSGIIAIVCLLHVDVGN--VNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYAD 109 (197)
Q Consensus 33 I~~L~-~s~d~~eklggI~aId~Li~~~~~~--~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve 109 (197)
++... +++++.-++-+-.-++.|+.+++++ ..+++.-.-|.|..-+.+.+..+-..+=+||-.|...-+..--+|+.
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~ 737 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP 737 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34444 4557778889999999999886555 33444445555555566677888888889999999877666778888
Q ss_pred HHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchh------HhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 110 FEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIF------YQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 110 ~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~------~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
..|..++=.+ .+-++.-|.-|--.|.++....-++- ...++.|+.-|--++-.-+..++-+..-|+...
T Consensus 738 k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~i 812 (1176)
T KOG1248|consen 738 KLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHI 812 (1176)
T ss_pred HHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 8888888777 66677777777777788884322222 235788888888888888888887765555543
No 87
>KOG2259|consensus
Probab=76.12 E-value=16 Score=36.46 Aligned_cols=87 Identities=21% Similarity=0.255 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhc
Q psy11494 83 IGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVR 162 (197)
Q Consensus 83 ~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLr 162 (197)
.+|-+.|-..+++|+...-+++..-+++.++ +-.|..+.=|+=|..-|+-++.+ -.--...++.|...|.
T Consensus 387 ~EVR~AAV~Sl~~La~ssP~FA~~aldfLvD-----MfNDE~~~VRL~ai~aL~~Is~~-----l~i~eeql~~il~~L~ 456 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATSSPGFAVRALDFLVD-----MFNDEIEVVRLKAIFALTMISVH-----LAIREEQLRQILESLE 456 (823)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-----HhccHHHHHHHHHHHHHHHHHHH-----heecHHHHHHHHHHHH
Confidence 5778888899999998766666555554433 23456677788888888888887 2223466777888899
Q ss_pred CCcHHHHHHHHHHHHHH
Q psy11494 163 DPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 163 Dpk~~iRe~Aa~aL~~c 179 (197)
|.++.||++.-+.|..|
T Consensus 457 D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 457 DRSVDVREALRELLKNA 473 (823)
T ss_pred hcCHHHHHHHHHHHHhc
Confidence 99999999998887653
No 88
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=74.93 E-value=61 Score=28.83 Aligned_cols=106 Identities=12% Similarity=0.138 Sum_probs=87.4
Q ss_pred CCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcc--hhhHHHHHHHHHHHhhCCchhHhh----hhHH
Q psy11494 80 SNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVE--GKRHAAVLVLKELAVTVPTIFYQH----VQAF 153 (197)
Q Consensus 80 ~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e--~rR~AAvLvLrELa~naPt~~~~~----v~~~ 153 (197)
..|++|+...+....++-..-.....++.+.-+...++.+..+-.+ .-|.+=--+|+.+.++.|..+... ...+
T Consensus 87 ~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~ 166 (319)
T PF08767_consen 87 AREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLV 166 (319)
T ss_dssp GS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHH
T ss_pred ccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHH
Confidence 4699999999999998877555677889999999999999765443 345666678999999998888765 6688
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhh
Q psy11494 154 FDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQ 185 (197)
Q Consensus 154 ~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~ 185 (197)
+|.|--+++++...|-+.+..+|...+.-+..
T Consensus 167 idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 167 IDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 89988899999999999999999988888777
No 89
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=73.76 E-value=50 Score=27.31 Aligned_cols=131 Identities=19% Similarity=0.238 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhhc-CCCcchhhhHHHHHHHhhhCCC-------------------CChhHHHHHHHHHHHhhhcc----
Q psy11494 45 KKSGIIAIVCLLHV-DVGNVNSRNIRFANYLRNLLPS-------------------NDIGVMRYAAKTVGKLAQIS---- 100 (197)
Q Consensus 45 klggI~aId~Li~~-~~~~~~~~~~rf~~yL~~~l~~-------------------~D~~vm~~AA~~lG~L~~~g---- 100 (197)
|.+++.++..+... +.- -|..|...++|. .++.|=..|+.++.-|..-+
T Consensus 3 R~~Al~~L~al~k~~~~r-------~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L 75 (182)
T PF13251_consen 3 RQAALQCLQALAKSTDKR-------SLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFL 75 (182)
T ss_pred hHHHHHHHHHHHHhcCCc-------eeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHH
Confidence 56677777777655 311 255566666663 46777788888887776422
Q ss_pred ----------Ccchh-----hhHHHHHHHHHhhh-cCCCcchhhHHHHHHHHHHHhhCCchh--HhhhhHHHHHHHhhhc
Q psy11494 101 ----------GTFSA-----EYADFEMKKAIEWL-GGDRVEGKRHAAVLVLKELAVTVPTIF--YQHVQAFFDFVFSAVR 162 (197)
Q Consensus 101 ----------G~~~~-----~~Ve~ev~~AlewL-~~~r~e~rR~AAvLvLrELa~naPt~~--~~~v~~~~d~Iw~aLr 162 (197)
+++++ --+=.|+-+++-|. +.|..-.--...+=.|.-|..++|.-= -..++.++..+-.-++
T Consensus 76 ~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~ 155 (182)
T PF13251_consen 76 AQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLR 155 (182)
T ss_pred HHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHh
Confidence 22211 11224666777665 333333322223334556778888733 3447888899999999
Q ss_pred CCcHHHHHHHHHHHHHHHHH
Q psy11494 163 DPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 163 Dpk~~iRe~Aa~aL~~cL~i 182 (197)
+.+..||.++..++.+.+..
T Consensus 156 ~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 156 HRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred cCCCcHHHHHHHHHHHHHcC
Confidence 99999999999988876543
No 90
>KOG1243|consensus
Probab=73.66 E-value=55 Score=32.62 Aligned_cols=166 Identities=16% Similarity=0.068 Sum_probs=103.2
Q ss_pred HHHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHH
Q psy11494 11 RTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAA 90 (197)
Q Consensus 11 ~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA 90 (197)
....+.++.+. |-..+...|..|+.++|..=|+-=+.-|+..++.=..+.. -.+-...+-.-+..+|..+.+.+-
T Consensus 316 ~k~~k~ld~~e---yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~--~d~I~phv~~G~~DTn~~Lre~Tl 390 (690)
T KOG1243|consen 316 FKLGKDLDEEE---YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQIL--NDQIFPHVALGFLDTNATLREQTL 390 (690)
T ss_pred HHhhhhccccc---cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhh--cchhHHHHHhhcccCCHHHHHHHH
Confidence 34456666666 5555777889999999986555556666777655322200 011122222334456777777777
Q ss_pred HHHHHhhhccCcchhhhHHHHHHHHHhhhcC---------------------------------------CCcchhhHHH
Q psy11494 91 KTVGKLAQISGTFSAEYADFEMKKAIEWLGG---------------------------------------DRVEGKRHAA 131 (197)
Q Consensus 91 ~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~---------------------------------------~r~e~rR~AA 131 (197)
+++-.|+-. +...-+..|+-+.+.=+|. +...+-|.|+
T Consensus 391 ksm~~La~k---L~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~ 467 (690)
T KOG1243|consen 391 KSMAVLAPK---LSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAG 467 (690)
T ss_pred HHHHHHHhh---hchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhh
Confidence 777766642 3333455555555555554 1224467777
Q ss_pred HHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhc
Q psy11494 132 VLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQR 186 (197)
Q Consensus 132 vLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~R 186 (197)
++.|.- ...+.....--.++++.+=...-||...||..|-.+++.||..+.+-
T Consensus 468 v~~l~a--t~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 468 VLALAA--TQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred hHHHhh--cccccchhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 777542 22222333334677778888889999999999999999999988765
No 91
>KOG4500|consensus
Probab=73.44 E-value=71 Score=30.67 Aligned_cols=73 Identities=19% Similarity=0.351 Sum_probs=53.2
Q ss_pred HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH-HHHHHhhhc----CCCcchhhHHHHHHHHHHHhh
Q psy11494 68 IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE-MKKAIEWLG----GDRVEGKRHAAVLVLKELAVT 141 (197)
Q Consensus 68 ~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e-v~~AlewL~----~~r~e~rR~AAvLvLrELa~n 141 (197)
.+|-..+...+|++|.+....++-++|.+++.-.. .-.+||.. ++.-++.|- .+++-.+-||++--||-|+.-
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~-ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP 391 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDI-CIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP 391 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc
Confidence 45778888899999999999999999999997432 23455544 444556663 355667788888888877643
No 92
>KOG2032|consensus
Probab=73.29 E-value=71 Score=30.79 Aligned_cols=150 Identities=15% Similarity=0.111 Sum_probs=84.5
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCC-CcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhH
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDV-GNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYA 108 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~-~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~V 108 (197)
-..+.++.++|++++- |+.-.-.-++... .+-....-+|.+....-.+..-+.-..+=|+..|....+.-....+++
T Consensus 183 ~~~~w~qls~~~~h~~--g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~ 260 (533)
T KOG2032|consen 183 VSRRWSQLSDNDIHRV--GLTRLQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVL 260 (533)
T ss_pred ccchhhhcccCcccHH--HHHHHHHHHHhhCCccHHHHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHH
Confidence 3456666777776532 2222222222211 111112222333222222333333444455566655555333456666
Q ss_pred HHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCC-cHHHHHHHHHHHHHHHHHHhhc
Q psy11494 109 DFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDP-KPEIRLHAVKAIRAALVVTAQR 186 (197)
Q Consensus 109 e~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDp-k~~iRe~Aa~aL~~cL~ii~~R 186 (197)
++...++ .+....-|.-|+-.|--+|.-+|.=+..|.+.++|.|-.+|-|+ ...|--.|..+|-..+..++.+
T Consensus 261 ~~la~ka-----~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 261 LSLANKA-----TDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred HHHHHhc-----cCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 6554443 34455667777777777888899999999999999999999999 5555555666666555555444
No 93
>KOG2956|consensus
Probab=73.18 E-value=30 Score=33.03 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHH
Q psy11494 106 EYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVK 174 (197)
Q Consensus 106 ~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~ 174 (197)
++...-+.--+|-|+....+..|-=|.-+|+|+.+|-|+-++.+...-......+=.|+...+-..|++
T Consensus 325 q~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aee 393 (516)
T KOG2956|consen 325 QHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEE 393 (516)
T ss_pred HHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 334444445567777778999999999999999999999999999998888888889986644444443
No 94
>KOG1062|consensus
Probab=73.01 E-value=13 Score=37.47 Aligned_cols=80 Identities=21% Similarity=0.318 Sum_probs=65.2
Q ss_pred HHhhhCC-CCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhh
Q psy11494 73 YLRNLLP-SNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQ 151 (197)
Q Consensus 73 yL~~~l~-~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~ 151 (197)
-++.++. -.+..+-..|+.++||.+.. +.-|-||-|.=.|.-+...-|+.+-+|-.
T Consensus 297 ~V~TI~~I~~~~~LrvlainiLgkFL~n-----------------------~d~NirYvaLn~L~r~V~~d~~avqrHr~ 353 (866)
T KOG1062|consen 297 CVRTIMDIRSNSGLRVLAINILGKFLLN-----------------------RDNNIRYVALNMLLRVVQQDPTAVQRHRS 353 (866)
T ss_pred HHHHHHhccCCchHHHHHHHHHHHHhcC-----------------------CccceeeeehhhHHhhhcCCcHHHHHHHH
Confidence 3344443 34778889999999998874 66788999999999999999999999987
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 152 AFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 152 ~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
.|++ .|.||.+.||..|.+.+-+.
T Consensus 354 tIle----CL~DpD~SIkrralELs~~l 377 (866)
T KOG1062|consen 354 TILE----CLKDPDVSIKRRALELSYAL 377 (866)
T ss_pred HHHH----HhcCCcHHHHHHHHHHHHHH
Confidence 7766 57999999999999876543
No 95
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=72.05 E-value=37 Score=31.56 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=28.1
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHH
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGK 95 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~ 95 (197)
..+.+.+.+++..=+-+.+.|+.. +. .......|...+.+.|+.|-..+..++|.
T Consensus 89 ~~L~~~L~d~~~~vr~aaa~ALg~---i~-------~~~a~~~L~~~L~~~~p~vR~aal~al~~ 143 (410)
T TIGR02270 89 RSVLAVLQAGPEGLCAGIQAALGW---LG-------GRQAEPWLEPLLAASEPPGRAIGLAALGA 143 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhc---CC-------chHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 455555555554434454544432 21 12344555555666666665555555554
No 96
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=71.91 E-value=66 Score=27.90 Aligned_cols=61 Identities=23% Similarity=0.300 Sum_probs=42.0
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhc
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQI 99 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~ 99 (197)
....+.+++.+++..-|.++..+ |-+.+ -.+....|..++...+..+-..|+.++|++-.+
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~---l~~~~-------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~ 104 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVA---LGELG-------SEEAVPLLRELLSDEDPRVRDAAADALGELGDP 104 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHH---Hhhhc-------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh
Confidence 34566777777776667777666 22222 234667778888888888889999988887643
No 97
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=71.87 E-value=36 Score=27.80 Aligned_cols=81 Identities=16% Similarity=0.019 Sum_probs=63.8
Q ss_pred hhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCch
Q psy11494 66 RNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTI 145 (197)
Q Consensus 66 ~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~ 145 (197)
.++||...+-.+.-+.|.++-..|-++++-..+-|=.=+.+.|-.- =-|+++....=|.-|.-+++++.+.=|++
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~l-----IAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTL-----IALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHh-----hhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 4677777777777789999999999999998886655566666433 33778888888889999999999999888
Q ss_pred hHhhhh
Q psy11494 146 FYQHVQ 151 (197)
Q Consensus 146 ~~~~v~ 151 (197)
+.....
T Consensus 80 v~~~~~ 85 (187)
T PF12830_consen 80 VESRYS 85 (187)
T ss_pred HHHHHH
Confidence 877643
No 98
>KOG2023|consensus
Probab=71.76 E-value=82 Score=31.74 Aligned_cols=132 Identities=16% Similarity=0.055 Sum_probs=98.4
Q ss_pred HHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCC--CCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCc
Q psy11494 47 SGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLP--SNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRV 124 (197)
Q Consensus 47 ggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~--~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~ 124 (197)
.++-||..+-.--+.++...++....-|-.++. .++..+++..|-|+|+|....+-..+-..+.=++..+.-|..=+.
T Consensus 722 NA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~D 801 (885)
T KOG2023|consen 722 NAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDD 801 (885)
T ss_pred HHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhccccc
Confidence 456666666322224455667777777777765 468999999999999999988888888888889999998887666
Q ss_pred chhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 125 EGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 125 e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
...|-+|-.=+-.+..-.|+-+..-+.-|.+.|=.-. +|+..+|.-=..-|..-
T Consensus 802 neEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~-np~~~l~~~f~kiL~g~ 855 (885)
T KOG2023|consen 802 NEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWS-NPEDDLRDEFYKILQGF 855 (885)
T ss_pred chhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhccc-ChHHHHHHHHHHHHHHH
Confidence 6667778877788888899988777788888763322 88888887766666543
No 99
>KOG1240|consensus
Probab=71.29 E-value=8.5 Score=40.52 Aligned_cols=64 Identities=14% Similarity=0.266 Sum_probs=51.1
Q ss_pred CcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhcch
Q psy11494 123 RVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRES 188 (197)
Q Consensus 123 r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~Re~ 188 (197)
+.-+-|.+|..+|++|+++.-.- ..+..++..+-..++||...||-.|.++|-.||..+..-.+
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~de--~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYIDDE--VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcchH--HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCc
Confidence 34568999999999999986542 23556666667778999999999999999999999876543
No 100
>KOG4413|consensus
Probab=71.20 E-value=65 Score=29.98 Aligned_cols=88 Identities=17% Similarity=0.084 Sum_probs=59.4
Q ss_pred HHHHHHHhh--CCchhHHHHHHHHHHHHhhcCC-Cc--chhhhHHHHHHHhhhC---CCCChhHHHHHHHHHHHhhhccC
Q psy11494 30 NHHIFEMVS--ANDVNEKKSGIIAIVCLLHVDV-GN--VNSRNIRFANYLRNLL---PSNDIGVMRYAAKTVGKLAQISG 101 (197)
Q Consensus 30 ~~~I~~L~~--s~d~~eklggI~aId~Li~~~~-~~--~~~~~~rf~~yL~~~l---~~~D~~vm~~AA~~lG~L~~~gG 101 (197)
-+.|-+++. ++|+-||+.++.+...+.+-.. .+ ...-+-++-..+...+ .++|+.....|-.++|.|-.+
T Consensus 257 IdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn-- 334 (524)
T KOG4413|consen 257 IDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN-- 334 (524)
T ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC--
Confidence 345666664 5788999999988888864421 11 2334556666666664 579999999999999988654
Q ss_pred cchhhhHHHHHHHHHhhh
Q psy11494 102 TFSAEYADFEMKKAIEWL 119 (197)
Q Consensus 102 ~~~~~~Ve~ev~~AlewL 119 (197)
+.++|++.+--..+.+-+
T Consensus 335 teGadlllkTgppaaehl 352 (524)
T KOG4413|consen 335 TEGADLLLKTGPPAAEHL 352 (524)
T ss_pred cchhHHHhccCChHHHHH
Confidence 566777765444444444
No 101
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=71.15 E-value=34 Score=28.47 Aligned_cols=69 Identities=14% Similarity=0.053 Sum_probs=60.6
Q ss_pred HHHHHHHhhhcCCCcchhhHHHHHHHHHHHhh-CCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 110 FEMKKAIEWLGGDRVEGKRHAAVLVLKELAVT-VPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 110 ~ev~~AlewL~~~r~e~rR~AAvLvLrELa~n-aPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
+-+.-.+|-|++ ..+.-|+-|..-.+||.++ ++.-+.+.++++.--|=.||-..+..|..++..+|+..
T Consensus 38 ~~Lpif~dGL~E-t~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 38 HYLPIFFDGLRE-TEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQL 107 (183)
T ss_pred hHHHHHHhhhhc-cCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 455666677764 5667789999999999999 99999999999999999999999999999999999865
No 102
>KOG2549|consensus
Probab=68.34 E-value=1.2e+02 Score=29.55 Aligned_cols=132 Identities=15% Similarity=0.224 Sum_probs=88.7
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCC----CCChhHHHHHHHHHHHhhhccCcch
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLP----SNDIGVMRYAAKTVGKLAQISGTFS 104 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~----~~D~~vm~~AA~~lG~L~~~gG~~~ 104 (197)
++++|.+.+-++|...+.-++..| +.|.+ ....+.+|...+-.-+. .+|.+++...-++.--|..++.-+.
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL----~TDsG-L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~l 282 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSL----ETDSG-LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFL 282 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh----ccCcc-HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccch
Confidence 456677777777776666666555 33422 35567777777765544 3698888877777777777776677
Q ss_pred hhhHHHHHHHHHhhhcC---------CCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCc
Q psy11494 105 AEYADFEMKKAIEWLGG---------DRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPK 165 (197)
Q Consensus 105 ~~~Ve~ev~~AlewL~~---------~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk 165 (197)
.-|+...+.--+-.+-+ |+.+.-|=.|+.+|-.+.++=++..+.--+.++.-.-.++.|++
T Consensus 283 epYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~ 352 (576)
T KOG2549|consen 283 EPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNK 352 (576)
T ss_pred hhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCC
Confidence 77887777776666632 33344444455555688888888777766677777777778884
No 103
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=67.93 E-value=47 Score=30.37 Aligned_cols=96 Identities=14% Similarity=0.070 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhc-CCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhcc
Q psy11494 22 VTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHV-DVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQIS 100 (197)
Q Consensus 22 ~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~-~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~g 100 (197)
-+||++++...+.+-+++.+...|-.-+.|+-.++.. ...-....+..+...|-..|..+|.++...+=.++-.++...
T Consensus 317 kQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 317 KQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 4678888888999988887766677778888888853 211133345555555666677789999999999998888877
Q ss_pred CcchhhhHHHHHHHHHh
Q psy11494 101 GTFSAEYADFEMKKAIE 117 (197)
Q Consensus 101 G~~~~~~Ve~ev~~Ale 117 (197)
.....++++.-|++-++
T Consensus 397 ~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 397 PELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66777788777776653
No 104
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=67.91 E-value=7.5 Score=22.72 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=19.8
Q ss_pred HhhhCCCCChhHHHHHHHHHHHhh
Q psy11494 74 LRNLLPSNDIGVMRYAAKTVGKLA 97 (197)
Q Consensus 74 L~~~l~~~D~~vm~~AA~~lG~L~ 97 (197)
|..++.++|.++.+.|.++++.|+
T Consensus 17 L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 17 LVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHc
Confidence 445556789999999999999886
No 105
>KOG3678|consensus
Probab=67.67 E-value=31 Score=33.44 Aligned_cols=57 Identities=30% Similarity=0.321 Sum_probs=44.2
Q ss_pred CChhHHHHHHHHHHHhhhccCcch-hhhHHHHHHHHHhhhc---CCCcchhhHHHHHHHHHHHh
Q psy11494 81 NDIGVMRYAAKTVGKLAQISGTFS-AEYADFEMKKAIEWLG---GDRVEGKRHAAVLVLKELAV 140 (197)
Q Consensus 81 ~D~~vm~~AA~~lG~L~~~gG~~~-~~~Ve~ev~~AlewL~---~~r~e~rR~AAvLvLrELa~ 140 (197)
.|+.+++-+|-+||..+.+||.-. -..|| |+|-|||. ....|--||-||+-.--|+.
T Consensus 276 t~P~lLRH~ALAL~N~~L~~~~a~qrrmve---Kr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 276 TDPALLRHCALALGNCALHGGQAVQRRMVE---KRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred CCHHHHHHHHHHhhhhhhhchhHHHHHHHH---hhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 599999999999999999998754 44666 47889996 35578888888876544443
No 106
>KOG0166|consensus
Probab=66.82 E-value=53 Score=31.67 Aligned_cols=154 Identities=13% Similarity=0.081 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhH--HHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcc
Q psy11494 26 TDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNI--RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTF 103 (197)
Q Consensus 26 ~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~--rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~ 103 (197)
...+..-+..|+++.|.+=..-+.-||.-|.|.. .|.-..+. ....-|-.+|...+..+...|=+++|.++.-....
T Consensus 235 v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~-ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~Q 313 (514)
T KOG0166|consen 235 VAPILPALLRLLHSTDEEVLTDACWALSYLTDGS-NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQ 313 (514)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHH
Confidence 3445566778888888655555666666666443 12111111 12223334455567777788999999966543334
Q ss_pred hhhhHHHHHHHHHhhhc-CCCcchhhHHHHHHHHHHHhhCCc-hhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 104 SAEYADFEMKKAIEWLG-GDRVEGKRHAAVLVLKELAVTVPT-IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 104 ~~~~Ve~ev~~AlewL~-~~r~e~rR~AAvLvLrELa~naPt-~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
|...+..-.=.+|.-|- ....+.-|=.||++|.-++.-.|. +=+..-..++..+-..+....--+|..|+-|++.+.
T Consensus 314 Tq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 314 TQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred HHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhc
Confidence 44455555445554443 366677888999999998887764 333334467777778888888999999999998664
No 107
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=65.89 E-value=90 Score=27.12 Aligned_cols=108 Identities=17% Similarity=0.184 Sum_probs=79.6
Q ss_pred HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhH
Q psy11494 68 IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFY 147 (197)
Q Consensus 68 ~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~ 147 (197)
.-+.+.+.+.+.+.|..+=+.|=+++|-.+......+.+++.--.+ -++. ..+.-|..|+-.|-.+..-=+.-++
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~----~~~~-~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQ----ALQK-DDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH----HHHh-CCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4566777788889999999999999999999877777776544322 2333 3777888899888888776443333
Q ss_pred hh-h--------hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 148 QH-V--------QAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 148 ~~-v--------~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
.. - ..+.+-+-..+.+-...+|..|++.+.-.|
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33 2 357777778888888889999999987654
No 108
>KOG2025|consensus
Probab=65.74 E-value=1.6e+02 Score=29.93 Aligned_cols=150 Identities=19% Similarity=0.105 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHH--HHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhh
Q psy11494 21 EVTAFTDAFNHHIFEMVSANDVNEKKSGIIA--IVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQ 98 (197)
Q Consensus 21 ~~~~~~~~l~~~I~~L~~s~d~~eklggI~a--Id~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~ 98 (197)
.|...+..+-..|.-+-+++.+.+|.=-.+| +..|.+.+-++. .+.-|-.||-+-..++|..|-...-..+.++.-
T Consensus 37 ~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~D--lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d 114 (892)
T KOG2025|consen 37 EFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEED--LVAGTFYHLLRGTESKDKKVRFRVLQILALLSD 114 (892)
T ss_pred hhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhh--HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc
Confidence 3554444444556666678777777655443 355555553332 344555555556677888888777777776665
Q ss_pred ccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHH
Q psy11494 99 ISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAI 176 (197)
Q Consensus 99 ~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL 176 (197)
.-|-...+......+.-++=| -||-.+=|.=||+.|.-+-.-.---=++-++.+.+.|- -||+..||.+|...+
T Consensus 115 ~~~eidd~vfn~l~e~l~~Rl-~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liq---nDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 115 ENAEIDDDVFNKLNEKLLIRL-KDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQ---NDPSDEVRRAALSNI 188 (892)
T ss_pred cccccCHHHHHHHHHHHHHHH-hccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh---cCCcHHHHHHHHHhh
Confidence 444444455544444433333 35666778888888887764222222233444444443 488999988876543
No 109
>KOG1059|consensus
Probab=63.62 E-value=1.8e+02 Score=29.66 Aligned_cols=143 Identities=17% Similarity=0.270 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCc-chhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhc-cCcc--
Q psy11494 28 AFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGN-VNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQI-SGTF-- 103 (197)
Q Consensus 28 ~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~-~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~-gG~~-- 103 (197)
++...+|.|++++-+.=|+.+|+++-.+- ..|.| ...-+.|| +.-|...|+.|.-.|-.|+-.||+- +-.+
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~lykvF-LkYPeAlr~~FprL----~EkLeDpDp~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLLYKVF-LKYPEALRPCFPRL----VEKLEDPDPSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHH-HhhhHhHhhhHHHH----HHhccCCCchHHHHHHHHHHHHHhhCCccccc
Confidence 46677899999999999999999886553 12223 11113333 2234556888888887777777763 2222
Q ss_pred ------------------------------------------hhhhHH---------H-------------------HHH
Q psy11494 104 ------------------------------------------SAEYAD---------F-------------------EMK 113 (197)
Q Consensus 104 ------------------------------------------~~~~Ve---------~-------------------ev~ 113 (197)
..++++ . -++
T Consensus 219 LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq 298 (877)
T KOG1059|consen 219 LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ 298 (877)
T ss_pred ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH
Confidence 011111 1 123
Q ss_pred HHHhhhc---CCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 114 KAIEWLG---GDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 114 ~AlewL~---~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
-|++=|+ .+...|-||=|++-+.-++.--|..+ ...-|-|..+|-|....||-.|.+.|-..
T Consensus 299 LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V----qa~kdlIlrcL~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 299 LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV----QAHKDLILRCLDDKDESIRLRALDLLYGM 363 (877)
T ss_pred HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH----HHhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 3333333 45567889999999999888877654 45567788999999999999999987643
No 110
>KOG4224|consensus
Probab=63.60 E-value=22 Score=33.31 Aligned_cols=146 Identities=16% Similarity=0.078 Sum_probs=81.6
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChh-HHHHHHHHHHHhhhccCcchhhhHH
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIG-VMRYAAKTVGKLAQISGTFSAEYAD 109 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~-vm~~AA~~lG~L~~~gG~~~~~~Ve 109 (197)
..+.+|++|+-....+..+.+|.-+--....+...--.-|...|-++|..+|-+ .--.|..||-.|+-.+---.+.+.|
T Consensus 295 P~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~e 374 (550)
T KOG4224|consen 295 PLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRE 374 (550)
T ss_pred hHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhh
Confidence 458899999888778888888854422222333322334777888888888776 4445677888887643223344444
Q ss_pred H-HHHHHHhhhcC-CCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 110 F-EMKKAIEWLGG-DRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 110 ~-ev~~AlewL~~-~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
. -|..++|.+.. +-.-.-+.+||+-.-.++.|.-..|... .+++.+-.-.-|-+..+|..|++||-.
T Consensus 375 sgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~--gi~~iLIp~t~s~s~Ev~gNaAaAL~N 443 (550)
T KOG4224|consen 375 SGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDS--GIIPILIPWTGSESEEVRGNAAAALIN 443 (550)
T ss_pred cCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhc--CCcceeecccCccchhhcccHHHHHHh
Confidence 2 24444444432 2222234555544333333322222211 222333333456799999999999864
No 111
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=62.88 E-value=1e+02 Score=26.69 Aligned_cols=138 Identities=12% Similarity=0.095 Sum_probs=81.4
Q ss_pred HHHHHHhh-CCchhHHHHHHHHHHHHhhcCCCcchhhhHH--HHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 31 HHIFEMVS-ANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR--FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 31 ~~I~~L~~-s~d~~eklggI~aId~Li~~~~~~~~~~~~r--f~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
+.+..+++ +.|+.-+--...++...-.+. .+...+.. -...+..+++..|+++-..|-+++..++.. ....+-
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~--~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~--~en~~~ 90 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFP--FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN--DENQEQ 90 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccCh--hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC--hhhHHH
Confidence 45555654 345433333344443333332 22222222 234567788889999999999999988765 334556
Q ss_pred HHHHHHHHHhhhcCCC-cchhhHHHHHHHHHHHhhCC--chhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHH
Q psy11494 108 ADFEMKKAIEWLGGDR-VEGKRHAAVLVLKELAVTVP--TIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAI 176 (197)
Q Consensus 108 Ve~ev~~AlewL~~~r-~e~rR~AAvLvLrELa~naP--t~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL 176 (197)
++..+.+-++++.... ...-..||.-+|+.|+..-- .++..+++.++. .|..-+..+|.-+..+|
T Consensus 91 Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~----LL~~G~~~~k~~vLk~L 158 (254)
T PF04826_consen 91 IKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLS----LLSSGSEKTKVQVLKVL 158 (254)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHH----HHHcCChHHHHHHHHHH
Confidence 7777888888876543 34445799999999864421 345556665553 44445556665554433
No 112
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=62.68 E-value=87 Score=29.10 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=19.7
Q ss_pred HHHhhhCCCCChhHHHHHHHHHHHhhh
Q psy11494 72 NYLRNLLPSNDIGVMRYAAKTVGKLAQ 98 (197)
Q Consensus 72 ~yL~~~l~~~D~~vm~~AA~~lG~L~~ 98 (197)
.-|...|...|..|-..+++.||++-.
T Consensus 89 ~~L~~~L~d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 89 RSVLAVLQAGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCc
Confidence 444556667788889999999987643
No 113
>KOG1077|consensus
Probab=62.51 E-value=98 Score=31.39 Aligned_cols=133 Identities=20% Similarity=0.255 Sum_probs=91.4
Q ss_pred HHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHH-HHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH
Q psy11494 33 IFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFA-NYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE 111 (197)
Q Consensus 33 I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~-~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e 111 (197)
-.+|++|+.=.||.=|-+.|.+|++-. ..+.++. +-+++=|.+.|+..+-.|=.+.|. .||--..+-+-.+
T Consensus 79 aV~LLss~kysEKqIGYl~is~L~n~n-----~dl~klvin~iknDL~srn~~fv~LAL~~I~n---iG~re~~ea~~~D 150 (938)
T KOG1077|consen 79 AVNLLSSNKYSEKQIGYLFISLLLNEN-----SDLMKLVINSIKNDLSSRNPTFVCLALHCIAN---IGSREMAEAFADD 150 (938)
T ss_pred HHHHhhcCCccHHHHhHHHHHHHHhcc-----hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHh---hccHhHHHHhhhh
Confidence 457888999999999999999999543 2355544 456777888888888888888874 4665555555556
Q ss_pred HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 112 MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 112 v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
|.+-+ ..++....=|-.|+|-|=-|-+++|-++.+ +.+++.|-..|-|...-|--+|...+.
T Consensus 151 I~KlL--vS~~~~~~vkqkaALclL~L~r~spDl~~~--~~W~~riv~LL~D~~~gv~ta~~sLi~ 212 (938)
T KOG1077|consen 151 IPKLL--VSGSSMDYVKQKAALCLLRLFRKSPDLVNP--GEWAQRIVHLLDDQHMGVVTAATSLIE 212 (938)
T ss_pred hHHHH--hCCcchHHHHHHHHHHHHHHHhcCccccCh--hhHHHHHHHHhCccccceeeehHHHHH
Confidence 65333 234444444444444444588889998765 478888888898988776666665444
No 114
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=62.17 E-value=1.6e+02 Score=28.57 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=97.8
Q ss_pred hhhCHHHHHHHHHHHHHHHHHHh-hCCchhHHHHH-HHHHHHH-hhcCC----CcchhhhHHHHHHHhhhCCCCChhHHH
Q psy11494 15 REVTVEEVTAFTDAFNHHIFEMV-SANDVNEKKSG-IIAIVCL-LHVDV----GNVNSRNIRFANYLRNLLPSNDIGVMR 87 (197)
Q Consensus 15 re~s~e~~~~~~~~l~~~I~~L~-~s~d~~eklgg-I~aId~L-i~~~~----~~~~~~~~rf~~yL~~~l~~~D~~vm~ 87 (197)
=.||.-.|....+-+-..+-++- .+++...++-- |.+|.-| +.... +++...+..++.++.+.= .+.++-.
T Consensus 72 G~lS~~rF~sVsdRF~~eL~~~~~~~~~~~~~~~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~f~~~h--~~~~ik~ 149 (552)
T PF14222_consen 72 GVLSEIRFVSVSDRFIAELEKLRKDSNDAESKIELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKFFLEAH--KKSDIKH 149 (552)
T ss_pred HHHHhhhChHHHHHHHHHHHHhcccCCchHHHHHHHHhhcceeeecCCCHHHHHHHHHHHHHHHHHHHhcc--hhhHHHH
Confidence 34555555443333333333333 33444333322 4444444 33322 234555556666665543 6777888
Q ss_pred HHHHHHHHhhhc-cCcch--------hhhHHHHHHHHHhhhcCCCcchhhHHHH--HHHHHHHhhCCchhHhhhh-HHHH
Q psy11494 88 YAAKTVGKLAQI-SGTFS--------AEYADFEMKKAIEWLGGDRVEGKRHAAV--LVLKELAVTVPTIFYQHVQ-AFFD 155 (197)
Q Consensus 88 ~AA~~lG~L~~~-gG~~~--------~~~Ve~ev~~AlewL~~~r~e~rR~AAv--LvLrELa~naPt~~~~~v~-~~~d 155 (197)
+-|+++-.|..| .++.+ .++|+.--.++.+|.... |+.++. |+--=|+...|.+|..+-. +++|
T Consensus 150 A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~----khw~~afPL~t~lLCvS~~e~F~~~W~~~~i~ 225 (552)
T PF14222_consen 150 AYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKP----KHWNVAFPLVTTLLCVSPKEFFLSNWLPSLIE 225 (552)
T ss_pred HHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCc----chhhhHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 899999999987 33333 456778888889998753 333333 4444566777789999888 7999
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 156 FVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 156 ~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
....-|+|+ ..|-.+.+++.-.+=
T Consensus 226 ~~~~klKdk--~~r~~~l~~l~RLlW 249 (552)
T PF14222_consen 226 SLISKLKDK--ETRPVALECLSRLLW 249 (552)
T ss_pred HHHhhcCCh--hhhHHHHHHHHHHHH
Confidence 999999999 667777777765443
No 115
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=62.07 E-value=1.2e+02 Score=30.69 Aligned_cols=55 Identities=22% Similarity=0.189 Sum_probs=38.0
Q ss_pred CCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 122 DRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 122 ~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
+.++.-|..|.-.|.-|= .-.-++.+++.|-..+-||.+.||..|+.|+..|+++
T Consensus 103 d~N~~iR~~AlR~ls~l~------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 103 DPNEEIRGFALRTLSLLR------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred CCCHHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 455555655554443221 1122567778888889999999999999999988754
No 116
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=62.01 E-value=64 Score=32.09 Aligned_cols=113 Identities=16% Similarity=0.221 Sum_probs=69.6
Q ss_pred HHHHhhCC-chhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH
Q psy11494 33 IFEMVSAN-DVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE 111 (197)
Q Consensus 33 I~~L~~s~-d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e 111 (197)
+.+.+.++ ....+++|++.+....+.-+ ++.+.+..|--.|..-+..+-..|-..||+.+-.++.- ...+++++.-
T Consensus 228 lv~hf~~n~smknq~a~V~lvr~~~~ll~-~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~--nv~~~~~~~~ 304 (898)
T COG5240 228 LVEHFRGNASMKNQLAGVLLVRATVELLK-ENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEE--NVGSQFVDQT 304 (898)
T ss_pred HHHHhhcccccccchhheehHHHHHHHHH-hChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHh--ccCHHHHHHH
Confidence 44444443 34557777666655544432 22334455555555555554344445578888777654 3567787766
Q ss_pred HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhh
Q psy11494 112 MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQH 149 (197)
Q Consensus 112 v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~ 149 (197)
|.----+|... +-.-|++|.-+|-|||-..|-.+...
T Consensus 305 vs~L~~fL~s~-rv~~rFsA~Riln~lam~~P~kv~vc 341 (898)
T COG5240 305 VSSLRTFLKST-RVVLRFSAMRILNQLAMKYPQKVSVC 341 (898)
T ss_pred HHHHHHHHhcc-hHHHHHHHHHHHHHHHhhCCceeeec
Confidence 55444555554 45679999999999999999866554
No 117
>KOG1822|consensus
Probab=61.68 E-value=2.8e+02 Score=31.26 Aligned_cols=167 Identities=16% Similarity=0.165 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHHHHh-hCCchhHHHHHHHHHHHHhhc-CCCcchhhhHHHHHHHhhhCC-CCChhHHHHHHHHHHH
Q psy11494 19 VEEVTAFTDAFNHHIFEMV-SANDVNEKKSGIIAIVCLLHV-DVGNVNSRNIRFANYLRNLLP-SNDIGVMRYAAKTVGK 95 (197)
Q Consensus 19 ~e~~~~~~~~l~~~I~~L~-~s~d~~eklggI~aId~Li~~-~~~~~~~~~~rf~~yL~~~l~-~~D~~vm~~AA~~lG~ 95 (197)
-.+-..|...+-+-+|+=+ ...|+.-|.|=++|+.+|+.. ++.-+.+...--.+.|..+-. ++++.|-.-+=+++.-
T Consensus 906 ~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~ 985 (2067)
T KOG1822|consen 906 VVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALAL 985 (2067)
T ss_pred hccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHH
Confidence 3344456666666666644 678899999999999999844 433334444443444444444 6677777777777777
Q ss_pred hhhccCcchhhhHHHHHHHHHhhhc-----------------------------------CC-------CcchhhHHHHH
Q psy11494 96 LAQISGTFSAEYADFEMKKAIEWLG-----------------------------------GD-------RVEGKRHAAVL 133 (197)
Q Consensus 96 L~~~gG~~~~~~Ve~ev~~AlewL~-----------------------------------~~-------r~e~rR~AAvL 133 (197)
++-+||.+-.-+|+.-+--+++-|- ++ +....++||+.
T Consensus 986 i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~a 1065 (2067)
T KOG1822|consen 986 ILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACA 1065 (2067)
T ss_pred HHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHH
Confidence 7777777655566654444444431 11 11346677776
Q ss_pred HH----------------HHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhcchhhh
Q psy11494 134 VL----------------KELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAKQ 191 (197)
Q Consensus 134 vL----------------rELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~Re~~~~ 191 (197)
++ ++|..-+|- +.+...+.-.+=+.|..+-..+|.++.. ||+-+.+||..+.
T Consensus 1066 llls~~d~lnqa~ai~clqqlhlFapr--~~n~~~lV~~L~~~l~s~~~i~r~~~~~----clrql~~Re~sev 1133 (2067)
T KOG1822|consen 1066 LLLSHSDPLNQAAAIKCLQQLHLFAPR--HVNLDSLVLQLCSLLSSSYLILRRASFS----CLRQLVQREASEV 1133 (2067)
T ss_pred HhcCCCccchHHHHHHHHHHHHhhcch--hccHHHHHHHHHHHhcchhhhhhhhHHh----hhhHHhHHHHHHH
Confidence 54 566666776 5566677777777777777777777665 5557778876553
No 118
>KOG4653|consensus
Probab=60.65 E-value=2.1e+02 Score=29.60 Aligned_cols=152 Identities=14% Similarity=0.156 Sum_probs=99.6
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHH
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYAD 109 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve 109 (197)
.++-.+.++.+.+.=|=+|+.-+..|++-.+..+-..-.+.-......+...|+=|--.|-+.+--|+-. +..+..+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev---y~e~il~ 805 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV---YPEDILP 805 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh---cchhhHH
Confidence 5566677788888889999999999998553333333344444555556666776666666655555542 3333332
Q ss_pred HHHHHHHhhhcC---CCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhc
Q psy11494 110 FEMKKAIEWLGG---DRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQR 186 (197)
Q Consensus 110 ~ev~~AlewL~~---~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~R 186 (197)
.... +|... .+.+.+=--|= ++-.+++.-.-+++.|...+.+.-..++|||....|..+-..|..|..+..-+
T Consensus 806 dL~e---~Y~s~k~k~~~d~~lkVGE-ai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 806 DLSE---EYLSEKKKLQTDYRLKVGE-AILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred HHHH---HHHhcccCCCccceehHHH-HHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 2111 12221 11233333342 33346666677888999999999999999999999999999999999988765
Q ss_pred ch
Q psy11494 187 ES 188 (197)
Q Consensus 187 e~ 188 (197)
-+
T Consensus 882 vs 883 (982)
T KOG4653|consen 882 VS 883 (982)
T ss_pred hh
Confidence 43
No 119
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=60.26 E-value=1.2e+02 Score=26.43 Aligned_cols=151 Identities=11% Similarity=0.106 Sum_probs=106.5
Q ss_pred hhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhc-CCCc-----chhhhHHHHHHHhhhC---CC-----
Q psy11494 15 REVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHV-DVGN-----VNSRNIRFANYLRNLL---PS----- 80 (197)
Q Consensus 15 re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~-~~~~-----~~~~~~rf~~yL~~~l---~~----- 80 (197)
+.++.....+++..+-.-|..|+...++.-|..|+.++..|++- ...+ ......-|.+-|.+++ |+
T Consensus 106 ~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~ 185 (282)
T PF10521_consen 106 SQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPED 185 (282)
T ss_pred hcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCch
Confidence 57788889999999999999999888888999999999999863 2111 2333555677777664 32
Q ss_pred CChhHHHHHHHHHHHhhhc----cCcchhhhHHHHHHH-HHhhhcCC-C--cchhhHHHHHHHHHHHhhCCchhHhhhhH
Q psy11494 81 NDIGVMRYAAKTVGKLAQI----SGTFSAEYADFEMKK-AIEWLGGD-R--VEGKRHAAVLVLKELAVTVPTIFYQHVQA 152 (197)
Q Consensus 81 ~D~~vm~~AA~~lG~L~~~----gG~~~~~~Ve~ev~~-AlewL~~~-r--~e~rR~AAvLvLrELa~naPt~~~~~v~~ 152 (197)
....++..|=.|+=.|+.. ++..-....+..+.. -+.-+.-. + ....+.+-+-.|.++...-......|+..
T Consensus 186 ~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~r 265 (282)
T PF10521_consen 186 ESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQR 265 (282)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3567888888888888653 222333333333333 33333322 2 35566666667788888888899999999
Q ss_pred HHHHHHhhhcCCc
Q psy11494 153 FFDFVFSAVRDPK 165 (197)
Q Consensus 153 ~~d~Iw~aLrDpk 165 (197)
++..+-.-++||-
T Consensus 266 ii~~l~~~l~npf 278 (282)
T PF10521_consen 266 IIPVLSQILENPF 278 (282)
T ss_pred HHHHHHHHhcCCC
Confidence 9999999888884
No 120
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=57.25 E-value=2.1e+02 Score=28.42 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=79.5
Q ss_pred HHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHH-HHHHHHhhhcCCCcchh
Q psy11494 49 IIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADF-EMKKAIEWLGGDRVEGK 127 (197)
Q Consensus 49 I~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~-ev~~AlewL~~~r~e~r 127 (197)
..|++.|+.+.-......+.++..|+.+ .+.-..|-..||++++...+-...++++ .++.-+..|+-|....-
T Consensus 54 ~~~~~il~~~~~P~~K~~~~~l~~~~~~------~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~ 127 (668)
T PF04388_consen 54 QRALEILVGVQEPHDKHLFDKLNDYFVK------PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITV 127 (668)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHcC------chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHH
Confidence 4577777777633336666666666653 2444567788999999877877888884 57888888888888888
Q ss_pred hHHHHHHHHHHHhhCCchhHhhhhHHHHH
Q psy11494 128 RHAAVLVLKELAVTVPTIFYQHVQAFFDF 156 (197)
Q Consensus 128 R~AAvLvLrELa~naPt~~~~~v~~~~d~ 156 (197)
=.+|+++|-=|.=..|+.+-+|++.+|.-
T Consensus 128 ~~~al~~LimlLP~ip~~l~~~L~~Lf~I 156 (668)
T PF04388_consen 128 VSSALLVLIMLLPHIPSSLGPHLPDLFNI 156 (668)
T ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHH
Confidence 89999999999999999999999988875
No 121
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=56.68 E-value=1.4e+02 Score=26.41 Aligned_cols=134 Identities=12% Similarity=0.139 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCc--hhHHHHH--HHHHHHHhhcCCCcchh-hhHHHHHHHhhhC----------CC-CCh
Q psy11494 20 EEVTAFTDAFNHHIFEMVSAND--VNEKKSG--IIAIVCLLHVDVGNVNS-RNIRFANYLRNLL----------PS-NDI 83 (197)
Q Consensus 20 e~~~~~~~~l~~~I~~L~~s~d--~~eklgg--I~aId~Li~~~~~~~~~-~~~rf~~yL~~~l----------~~-~D~ 83 (197)
+.-..+++++...+...+..+. +.-|... .+||-+++.....+... -..-+...+.... .. .+.
T Consensus 121 ~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 121 EDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred ccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 3455677777777777775433 2222333 34555666444323222 1122332222221 21 246
Q ss_pred hHHHHHHHHHHHhhhc-cCcchhhhHHHHHHHHHhhhcCCCcchhhHHHH--HHHHHHHhh-CCchhHhhhhHH
Q psy11494 84 GVMRYAAKTVGKLAQI-SGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAV--LVLKELAVT-VPTIFYQHVQAF 153 (197)
Q Consensus 84 ~vm~~AA~~lG~L~~~-gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAv--LvLrELa~n-aPt~~~~~v~~~ 153 (197)
.+...|=..||-|+.. +.....++++..+..-.+.|+++..+.|--||- -+|.|+++. .....|+..+.+
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l 274 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEEL 274 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHH
Confidence 7888888999999964 222233666666777777777776666655543 568899995 223334444444
No 122
>KOG0889|consensus
Probab=55.22 E-value=52 Score=38.46 Aligned_cols=122 Identities=11% Similarity=0.039 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCC------CCChhHHHHHHHHHHHhhh
Q psy11494 25 FTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLP------SNDIGVMRYAAKTVGKLAQ 98 (197)
Q Consensus 25 ~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~------~~D~~vm~~AA~~lG~L~~ 98 (197)
....+..+.+.+..+++-+-|.||+.+|.||++-.. .........+.++.++- +.+.+....
T Consensus 1030 i~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~--~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~---------- 1097 (3550)
T KOG0889|consen 1030 MFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMP--SLWLLDFQVDILKALFFVLKDTESEVSSLPLD---------- 1097 (3550)
T ss_pred hHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhch--HHHHHHHHHHHhhhHHHhhcCCccccccchHH----------
Confidence 445566788999999999999999999999996542 22222233333333321 111111111
Q ss_pred ccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 99 ISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 99 ~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
++.+++.+-...++-.+ .-.+.|++ ....++..+-.-|.+|...||+.+...|+.
T Consensus 1098 ----~~~~~l~~ll~~~~~~~--~~~~~~~~-------------------~~~~~~~~lv~eL~npN~~VR~~~~~~L~~ 1152 (3550)
T KOG0889|consen 1098 ----EAKDILMDILRVIFIDE--LAEEERAK-------------------SAMNVFSPLVLELFNPNSDVREFSQKLLRL 1152 (3550)
T ss_pred ----HHHHHHHHHHHHHHHHh--hhhHHHHH-------------------HHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 11222222222222100 00111111 123455666778899999999999999998
Q ss_pred HHHHH
Q psy11494 179 ALVVT 183 (197)
Q Consensus 179 cL~ii 183 (197)
|....
T Consensus 1153 i~~~s 1157 (3550)
T KOG0889|consen 1153 ISELS 1157 (3550)
T ss_pred HHHHc
Confidence 88765
No 123
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=55.19 E-value=44 Score=31.28 Aligned_cols=74 Identities=22% Similarity=0.131 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhhc-cCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhh-hhHHHHHHHhhhcCC
Q psy11494 87 RYAAKTVGKLAQI-SGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQH-VQAFFDFVFSAVRDP 164 (197)
Q Consensus 87 ~~AA~~lG~L~~~-gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~-v~~~~d~Iw~aLrDp 164 (197)
..||++||.++.. +.....++.+.-+-..|. ...--+|+.|.+||.|.|.+.+..--.- .+.+.+.+-..|.+|
T Consensus 105 i~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~----S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 105 IAAAKALGLLLSYWPESSLQEIFQPLLLPYLN----SPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 4799999999986 333334444443444442 3567799999999999999855322111 445555555555544
No 124
>PF11724 YvbH_ext: YvbH-like oligomerisation region; InterPro: IPR021722 This domain is found at the C terminus of a group of bacterial uncharacterised proteins. This domain is composed of a helical hairpin that appears to mediate oligomerisation based on the known structure. ; PDB: 3B77_D.
Probab=54.36 E-value=6.6 Score=27.08 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCc
Q psy11494 85 VMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRV 124 (197)
Q Consensus 85 vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~ 124 (197)
-+..|+.++|++....|+...+| +.--+.|+.||...+.
T Consensus 6 SL~~A~s~l~~~r~~~~~~~~~F-k~ln~~aF~Wl~~~~~ 44 (61)
T PF11724_consen 6 SLELASSTLSRNRNDDGNVSDQF-KELNEFAFNWLEDHRK 44 (61)
T ss_dssp HHHHHHHHHSS---TT--HHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCHHHHH-HHHHHHHHHHHHHHHH
Confidence 46789999999876676765555 4556789999975443
No 125
>KOG2160|consensus
Probab=53.69 E-value=1.8e+02 Score=26.65 Aligned_cols=112 Identities=19% Similarity=0.229 Sum_probs=63.7
Q ss_pred HHHHHHHHhhCCc-hhHHHHHHHHHHHHhhcC-CCcchhhhHHHH--HHHhhhCCC--CChhHHHHHHHHHHHhhhccCc
Q psy11494 29 FNHHIFEMVSAND-VNEKKSGIIAIVCLLHVD-VGNVNSRNIRFA--NYLRNLLPS--NDIGVMRYAAKTVGKLAQISGT 102 (197)
Q Consensus 29 l~~~I~~L~~s~d-~~eklggI~aId~Li~~~-~~~~~~~~~rf~--~yL~~~l~~--~D~~vm~~AA~~lG~L~~~gG~ 102 (197)
.-+.++.++.+++ .+.|-.++.||-+||.-. .+. ..+-+.. .-|+.++.+ .|+.+-++|.-.++.|+.---+
T Consensus 167 ~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~--~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 167 ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQ--DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHH--HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 4566777775544 455689999999999543 222 2233333 347888887 5777778888888888763222
Q ss_pred chhhhHHH----HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhC
Q psy11494 103 FSAEYADF----EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTV 142 (197)
Q Consensus 103 ~~~~~Ve~----ev~~AlewL~~~r~e~rR~AAvLvLrELa~na 142 (197)
-..+.=.. -+..-..|++.+-+|.-=.+.+..++++-.+.
T Consensus 245 ~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~ 288 (342)
T KOG2160|consen 245 DEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRK 288 (342)
T ss_pred hhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 11122222 23333344444445554444455555555554
No 126
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=53.30 E-value=64 Score=25.02 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhcc
Q psy11494 21 EVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQIS 100 (197)
Q Consensus 21 ~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~g 100 (197)
+|.+|..++.+-..+- +-++..|++=-=-| ..|. ++.-..+.++..+|. .+.|+.++..|+.=+|.+++.-
T Consensus 5 sfdeY~~El~sg~L~W-SP~H~se~FW~ENa----~kf~-~~~~~llk~L~~lL~---~s~d~~~laVac~Dig~~vr~~ 75 (119)
T PF11698_consen 5 SFDEYLSELESGHLEW-SPVHKSEKFWRENA----DKFE-ENNFELLKKLIKLLD---KSDDPTTLAVACHDIGEFVRHY 75 (119)
T ss_dssp HHHHHHHHHHHT------GGGG-HHHHHHHS----GGGS-SGGGHHHHHHHHHH----SHHHHHHHHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHhcCCccc-cCCCCCccHHHHHH----HHHH-HcccHHHHHHHHHHc---cCCCcceeehhhcchHHHHHHC
Confidence 5778888887766554 22233233211000 1222 222333334444331 4569999999999999999862
Q ss_pred CcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 101 GTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 101 G~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
...-.+++.. ..-+.|...+.+|.+.||..|..|+...+
T Consensus 76 -p~gr~ii~~l----------------------------------------g~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 76 -PNGRNIIEKL----------------------------------------GAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp -GGGHHHHHHH----------------------------------------SHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHhc----------------------------------------ChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 1122233221 23455778888888888888888877654
No 127
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=52.67 E-value=45 Score=27.79 Aligned_cols=66 Identities=17% Similarity=0.106 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhcCCCc-chhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHH
Q psy11494 45 KKSGIIAIVCLLHVDVGN-VNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADF 110 (197)
Q Consensus 45 klggI~aId~Li~~~~~~-~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ 110 (197)
++=+..++..|++.++++ ...-+++...-|++.|.+.|.+|+..+=+++=+|+..+......+|-+
T Consensus 55 ~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPy 121 (183)
T PF10274_consen 55 RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPY 121 (183)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 677788888888774444 566688899999999999999999999999999988654444555543
No 128
>PF05536 Neurochondrin: Neurochondrin
Probab=52.09 E-value=2.2e+02 Score=27.46 Aligned_cols=101 Identities=14% Similarity=0.044 Sum_probs=67.9
Q ss_pred ChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhc---CCCcchhhHHHHHHHHHHHhhCCc--hhHhhhhHHHHH
Q psy11494 82 DIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLG---GDRVEGKRHAAVLVLKELAVTVPT--IFYQHVQAFFDF 156 (197)
Q Consensus 82 D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~---~~r~e~rR~AAvLvLrELa~naPt--~~~~~v~~~~d~ 156 (197)
....+..|...|.+++...+.....--..++...+.-|. .......|+-.+.+|..+-.++|. .-.+.-++..++
T Consensus 152 ~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~ 231 (543)
T PF05536_consen 152 QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSD 231 (543)
T ss_pred CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHH
Confidence 667789999999999886653222111122233333332 345667899999999999999974 455566677777
Q ss_pred HHhhhcC-----CcHHHHHHHHHHHHHHHHH
Q psy11494 157 VFSAVRD-----PKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 157 Iw~aLrD-----pk~~iRe~Aa~aL~~cL~i 182 (197)
||.+|+| +...-|..|..+....+++
T Consensus 232 l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 232 LRKGLRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 7777765 5677788887777766666
No 129
>KOG2025|consensus
Probab=51.89 E-value=1.7e+02 Score=29.74 Aligned_cols=108 Identities=14% Similarity=0.136 Sum_probs=76.9
Q ss_pred HHHHHHhhhCCC-----CChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCC
Q psy11494 69 RFANYLRNLLPS-----NDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVP 143 (197)
Q Consensus 69 rf~~yL~~~l~~-----~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naP 143 (197)
-|-.|+..+++- .--.+++++|+-+.-|= --.++.|+|+.-+..-+....+..+ +=|+=-+.+|.-|..+..
T Consensus 41 eflr~vn~il~vkKresi~dRIl~fla~fv~sl~--q~d~e~DlV~~~f~hlLRg~Eskdk-~VRfrvlqila~l~d~~~ 117 (892)
T KOG2025|consen 41 EFLRVVNYILLVKKRESIPDRILSFLARFVESLP--QLDKEEDLVAGTFYHLLRGTESKDK-KVRFRVLQILALLSDENA 117 (892)
T ss_pred HHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhh--ccCchhhHHHHHHHHHHhcccCcch-hHHHHHHHHHHHHhcccc
Confidence 466777766652 34567778887776664 3367888999988888887765333 446777888887777533
Q ss_pred chhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 144 TIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 144 t~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
-+=-.-.+.+.+.+-..|.|..+.||--|..||+..
T Consensus 118 eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrl 153 (892)
T KOG2025|consen 118 EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRL 153 (892)
T ss_pred ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 322333456778899999999999999999998743
No 130
>KOG1790|consensus
Probab=49.62 E-value=51 Score=25.70 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=45.4
Q ss_pred CCCChhHHHHHHHHHHHhhhc-cCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCC
Q psy11494 79 PSNDIGVMRYAAKTVGKLAQI-SGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVP 143 (197)
Q Consensus 79 ~~~D~~vm~~AA~~lG~L~~~-gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naP 143 (197)
|..++.+....++.--.+.+. ||++-+..|...|.+||- +.+.+.-.+++-+..-++|++..-|
T Consensus 55 ~~~RPk~~~rlsk~~KtVsRayGG~~ca~~vrerI~rAFL-i~EQkIV~k~~~~~~~~~~~~~~~~ 119 (121)
T KOG1790|consen 55 PALRPKELMRLSKSHKTVSRAYGGVLCAKCVRERIIRAFL-IEEQKIVKKVLKAQEALKELLRKEP 119 (121)
T ss_pred CCcCHHHHHHHhhhHHHhhhhccccchHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhhhccc
Confidence 334555555566666556555 999999999999999982 2344566677778888888877654
No 131
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=49.34 E-value=1.3e+02 Score=29.88 Aligned_cols=109 Identities=20% Similarity=0.230 Sum_probs=74.6
Q ss_pred hhCCCCChhHHHHHHHHHHHhhhcc--CcchhhhHHHH----HHHHHhhhcCC----------------CcchhhHHHHH
Q psy11494 76 NLLPSNDIGVMRYAAKTVGKLAQIS--GTFSAEYADFE----MKKAIEWLGGD----------------RVEGKRHAAVL 133 (197)
Q Consensus 76 ~~l~~~D~~vm~~AA~~lG~L~~~g--G~~~~~~Ve~e----v~~AlewL~~~----------------r~e~rR~AAvL 133 (197)
..+.++|..+.+.+-.++-.+...+ .-+...+|++. -.+|++-|-+- .+-.-|+.++-
T Consensus 11 ~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~~~il~~~~~P~~K~~~~~l~~~~~~~~~Rl~~L~ 90 (668)
T PF04388_consen 11 SLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQRALEILVGVQEPHDKHLFDKLNDYFVKPSYRLQALT 90 (668)
T ss_pred HHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHHHHHHHhcCCccHHHHHHHHHHHHcCchhHHHHHH
Confidence 3456777777777777666665542 22344444442 23455555321 13468999999
Q ss_pred HHHHHHhhCCchhHhhhh-HHHHHHHh-hhcCCcHHHHHHHHHHHHHHHHHHh
Q psy11494 134 VLKELAVTVPTIFYQHVQ-AFFDFVFS-AVRDPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 134 vLrELa~naPt~~~~~v~-~~~d~Iw~-aLrDpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
+|-.+.+.-|+.+|.-+. .+|+++.. ...|.+..+=..|..+|-.+|=.|.
T Consensus 91 Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 91 LLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred HHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 999999999999998875 66666554 4579999999999998888775553
No 132
>KOG0211|consensus
Probab=48.71 E-value=3.1e+02 Score=27.87 Aligned_cols=134 Identities=19% Similarity=0.147 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCc
Q psy11494 45 KKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRV 124 (197)
Q Consensus 45 klggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~ 124 (197)
++.-+-.|-+|..-.|.. -.-.+|+.+++.-++..+.++-+.||..+-.++..=| ..-.-+.++.+-+.-...+ +
T Consensus 496 r~ail~~ip~la~q~~~~--~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~-~ 570 (759)
T KOG0211|consen 496 RLAILEYIPQLALQLGVE--FFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQD-N 570 (759)
T ss_pred HHHHHHHHHHHHHhhhhH--HhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCc-c
Confidence 334444454554332211 2234589999999999999999999999999998744 2223334444444443332 2
Q ss_pred chhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhh
Q psy11494 125 EGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQ 185 (197)
Q Consensus 125 e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~ 185 (197)
---|++-+.-+.+||.--.+-++- ..+++-+|....||-+.||-.++..|...+.++..
T Consensus 571 y~~R~t~l~si~~la~v~g~ei~~--~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~ 629 (759)
T KOG0211|consen 571 YLVRMTTLFSIHELAEVLGQEITC--EDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE 629 (759)
T ss_pred cchhhHHHHHHHHHHHHhccHHHH--HHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch
Confidence 334556666666788776654443 46777889999999999999999999988887754
No 133
>KOG4224|consensus
Probab=48.42 E-value=2.4e+02 Score=26.65 Aligned_cols=153 Identities=12% Similarity=0.066 Sum_probs=86.6
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHh-hcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcc--hh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLL-HVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTF--SA 105 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li-~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~--~~ 105 (197)
+-..+.+|..+++..-|.-+-+|+.-|- +.+|--.-.....+-.|++- |.+.-...+...--++-.++.++|.. ..
T Consensus 252 lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~L-lqs~~~plilasVaCIrnisihplNe~lI~ 330 (550)
T KOG4224|consen 252 LVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVEL-LQSPMGPLILASVACIRNISIHPLNEVLIA 330 (550)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHH-HhCcchhHHHHHHHHHhhcccccCccccee
Confidence 3455677777777666666666666553 22221111111112233332 33333333443444566687776653 22
Q ss_pred hhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCC---chhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 106 EYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVP---TIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 106 ~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naP---t~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
| ..-++.-...|+...+|.-+.+|+-+|+-||-..- +.|+.. .-++..-..++|..+.+|+. +++|+.+
T Consensus 331 d--agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~es--gAi~kl~eL~lD~pvsvqse----isac~a~ 402 (550)
T KOG4224|consen 331 D--AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRES--GAIPKLIELLLDGPVSVQSE----ISACIAQ 402 (550)
T ss_pred c--ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhc--CchHHHHHHHhcCChhHHHH----HHHHHHH
Confidence 2 11134455677888899999999999999997432 222222 23344455678999999876 5667777
Q ss_pred Hhhcchhh
Q psy11494 183 TAQRESAK 190 (197)
Q Consensus 183 i~~Re~~~ 190 (197)
++--|-.|
T Consensus 403 Lal~d~~k 410 (550)
T KOG4224|consen 403 LALNDNDK 410 (550)
T ss_pred HHhccccH
Confidence 77655443
No 134
>KOG1059|consensus
Probab=47.95 E-value=1.3e+02 Score=30.61 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHhhCCchhHhhhhHHHHH
Q psy11494 127 KRHAAVLVLKELAVTVPTIFYQHVQAFFDF 156 (197)
Q Consensus 127 rR~AAvLvLrELa~naPt~~~~~v~~~~d~ 156 (197)
=--|||-|+.|||+..|--+.+.-|.||..
T Consensus 197 V~SAAV~VICELArKnPknyL~LAP~ffkl 226 (877)
T KOG1059|consen 197 VVSAAVSVICELARKNPQNYLQLAPLFYKL 226 (877)
T ss_pred HHHHHHHHHHHHHhhCCcccccccHHHHHH
Confidence 345899999999999999888888888764
No 135
>KOG1060|consensus
Probab=47.92 E-value=1.5e+02 Score=30.36 Aligned_cols=168 Identities=15% Similarity=0.181 Sum_probs=99.1
Q ss_pred HHHHHHHhhhhCHH---HHHHHHHHHHHHHHHHhhCC---------chhHHHHHHHHHHHHhhcC---CCc---------
Q psy11494 7 ASMVRTELREVTVE---EVTAFTDAFNHHIFEMVSAN---------DVNEKKSGIIAIVCLLHVD---VGN--------- 62 (197)
Q Consensus 7 ~~~v~~~~re~s~e---~~~~~~~~l~~~I~~L~~s~---------d~~eklggI~aId~Li~~~---~~~--------- 62 (197)
-+++.....|-++- ..---+++++..=++|+|++ |. |--|-++.|..|+... ..+
T Consensus 182 ~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dv-deWgQvvlI~mL~RYAR~~l~~P~~~~~~~e 260 (968)
T KOG1060|consen 182 EEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDV-DEWGQVVLINMLTRYARHQLPDPTVVDSSLE 260 (968)
T ss_pred HHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccch-hhhhHHHHHHHHHHHHHhcCCCccccccccc
Confidence 34445555554432 11112455666666777653 42 4457788998887541 000
Q ss_pred -c-------------------hhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCC
Q psy11494 63 -V-------------------NSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGD 122 (197)
Q Consensus 63 -~-------------------~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~ 122 (197)
+ ..-..-|.+..+.+|.+....|+..+|+++=+||-+. -..-+++..|. .|++
T Consensus 261 ~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~--~~~~i~kaLvr----LLrs- 333 (968)
T KOG1060|consen 261 DNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN--QVTKIAKALVR----LLRS- 333 (968)
T ss_pred cCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH--HHHHHHHHHHH----HHhc-
Confidence 0 1223457777788899999999999999999998542 22334433332 3433
Q ss_pred CcchhhHHHHHHHHHHHhhCCchhHhhhhHH------------------------------HHHHHhhhcCCcHHHHHHH
Q psy11494 123 RVEGKRHAAVLVLKELAVTVPTIFYQHVQAF------------------------------FDFVFSAVRDPKPEIRLHA 172 (197)
Q Consensus 123 r~e~rR~AAvLvLrELa~naPt~~~~~v~~~------------------------------~d~Iw~aLrDpk~~iRe~A 172 (197)
.++. +|--.-=+-.++...|++|-||+.+| +.-.-.-++++.-.+--+|
T Consensus 334 ~~~v-qyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~a 412 (968)
T KOG1060|consen 334 NREV-QYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAA 412 (968)
T ss_pred CCcc-hhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHH
Confidence 3333 33333333457888999999996533 3333344566655677788
Q ss_pred HHHHHHHHHHH
Q psy11494 173 VKAIRAALVVT 183 (197)
Q Consensus 173 a~aL~~cL~ii 183 (197)
.+|+.-|-.-+
T Consensus 413 V~AiGrCA~~~ 423 (968)
T KOG1060|consen 413 VKAIGRCASRI 423 (968)
T ss_pred HHHHHHHHHhh
Confidence 88888886543
No 136
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=47.86 E-value=1.1e+02 Score=22.65 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=55.5
Q ss_pred HhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHh
Q psy11494 116 IEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 116 lewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
+.-+++.+.-..|--+.--|.+|-+..+..+-...+++.-.+-.++..| .+|+.|.++-..-++.+.
T Consensus 20 l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~ 86 (107)
T PF08064_consen 20 LNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLD 86 (107)
T ss_pred HhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCC
Confidence 3334556677778889999999999999999999999999999999999 899999888876665544
No 137
>KOG1078|consensus
Probab=46.39 E-value=1.1e+02 Score=31.08 Aligned_cols=76 Identities=21% Similarity=0.173 Sum_probs=53.6
Q ss_pred hhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhc---CCCcchhhHHHHHHHHHHHhhC
Q psy11494 66 RNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLG---GDRVEGKRHAAVLVLKELAVTV 142 (197)
Q Consensus 66 ~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~---~~r~e~rR~AAvLvLrELa~na 142 (197)
...-|-..+..++.+++..|.-.||++.-.|....+...+ +|+.-|| ......-|+||+-+|-++|-.-
T Consensus 242 ~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~--------pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~ 313 (865)
T KOG1078|consen 242 ADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA--------PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKH 313 (865)
T ss_pred chhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc--------hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhC
Confidence 3555666777888889988888899988766554333222 2444444 4566778999999999999987
Q ss_pred CchhHhh
Q psy11494 143 PTIFYQH 149 (197)
Q Consensus 143 Pt~~~~~ 149 (197)
|..+...
T Consensus 314 P~~v~~c 320 (865)
T KOG1078|consen 314 PQAVTVC 320 (865)
T ss_pred Ccccccc
Confidence 7655443
No 138
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=45.86 E-value=1.2e+02 Score=22.36 Aligned_cols=85 Identities=6% Similarity=0.022 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchh-hhHHHHHHHh----hhCCCCChhHHHHHHHHHHHhhhc
Q psy11494 25 FTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNS-RNIRFANYLR----NLLPSNDIGVMRYAAKTVGKLAQI 99 (197)
Q Consensus 25 ~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~-~~~rf~~yL~----~~l~~~D~~vm~~AA~~lG~L~~~ 99 (197)
+..++-+.|.+-+....+..|++.++.+|.++......... ....|...+- .+....+.++.+..-++++-+-.
T Consensus 29 ~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ki~kll~iW~~- 107 (121)
T smart00582 29 HAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVLGAANDETKKKIRRLLNIWEE- 107 (121)
T ss_pred HHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc-
Confidence 33455555666666666678999999999998543222111 1223333333 33333455677777777766644
Q ss_pred cCcchhhhHHH
Q psy11494 100 SGTFSAEYADF 110 (197)
Q Consensus 100 gG~~~~~~Ve~ 110 (197)
.+.++.++++.
T Consensus 108 ~~iF~~~~i~~ 118 (121)
T smart00582 108 RGIFPPSVLRP 118 (121)
T ss_pred CCCCCHHHHHH
Confidence 35777777653
No 139
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=45.49 E-value=1.2e+02 Score=22.16 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=55.9
Q ss_pred HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 111 EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 111 ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
-.+.|++.|.. ..-+=|--|+..|+.|.++-. .....++.+++.....|+|+..-|=-.|..+|.+...
T Consensus 4 ~~~~al~~L~d-p~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 4 TLQEALSDLND-PLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHccC-CCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 46788888865 445678889999999999866 5555678999999999999999999999998876544
No 140
>PF09808 SNAPc_SNAP43: Small nuclear RNA activating complex (SNAPc), subunit SNAP43; InterPro: IPR019188 Members of this family are part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. They bind to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Furthermore, they also recruit TBP and BRF2 to the U6 snRNA TATA box. SNAPc consists of at least four stably associated subunits, SNAP43, SNAP45, SNAP50, and SNAP190. None of the three small subunits can bind to the PSE on their own [].
Probab=45.03 E-value=1.5e+02 Score=24.27 Aligned_cols=75 Identities=15% Similarity=0.230 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHh-hCCchhHHHHHHHHHHHHhhcCCCc-------chhhhHHHHHHHhhhCCCCChhHHHHHHH
Q psy11494 20 EEVTAFTDAFNHHIFEMV-SANDVNEKKSGIIAIVCLLHVDVGN-------VNSRNIRFANYLRNLLPSNDIGVMRYAAK 91 (197)
Q Consensus 20 e~~~~~~~~l~~~I~~L~-~s~d~~eklggI~aId~Li~~~~~~-------~~~~~~rf~~yL~~~l~~~D~~vm~~AA~ 91 (197)
.+...|.+.+.+.....+ ...+.++|.||++++-+|......+ +...+..+.++...+.+.+..+ +.-
T Consensus 44 ~e~~~f~~~~l~~~~~y~~~~~s~~~Rvg~lYlLY~LY~tQp~~~~~kIrisl~~~~~l~~~~~~~~~~~~~d----~~~ 119 (194)
T PF09808_consen 44 SELIEFMEELLQIALKYFLPPRSLQERVGGLYLLYALYNTQPCKPKVKIRISLSDWEELLDFVQELKEEQHLD----AYY 119 (194)
T ss_pred HHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHhcCCCCCccceEECHHHHHHHHHHHHHHHHccchH----HHH
Confidence 346678888877777755 4566799999999999999875432 2444556666666665444443 445
Q ss_pred HHHHhhh
Q psy11494 92 TVGKLAQ 98 (197)
Q Consensus 92 ~lG~L~~ 98 (197)
++-+|..
T Consensus 120 i~~kL~~ 126 (194)
T PF09808_consen 120 IFRKLLQ 126 (194)
T ss_pred HHHHHHH
Confidence 5666654
No 141
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=44.12 E-value=2.5e+02 Score=25.45 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=73.4
Q ss_pred HHhhhCCCCChhHHHHHHHHHHHhhhc--cCc--chhhhHHHHHHHHHhhh-cCCCcchhhHHHHHHHHHHHhhCCchhH
Q psy11494 73 YLRNLLPSNDIGVMRYAAKTVGKLAQI--SGT--FSAEYADFEMKKAIEWL-GGDRVEGKRHAAVLVLKELAVTVPTIFY 147 (197)
Q Consensus 73 yL~~~l~~~D~~vm~~AA~~lG~L~~~--gG~--~~~~~Ve~ev~~AlewL-~~~r~e~rR~AAvLvLrELa~naPt~~~ 147 (197)
.|-..||.-|.+.-+-++.+++.+.+. |+. .+.+|+...-...+.+| .+.....-=+-+--||||.++.-+-.-+
T Consensus 80 ~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~ 159 (335)
T PF08569_consen 80 LLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLAKI 159 (335)
T ss_dssp HHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHH
Confidence 344566777999999999999999985 343 36778877766677777 3444444445556788998888443222
Q ss_pred hhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 148 QHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 148 ~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
.--+..|...+.-+..|.-.|--+|-..++..|.
T Consensus 160 iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt 193 (335)
T PF08569_consen 160 ILYSECFWKFFKYVQLPNFDIASDAFSTFKELLT 193 (335)
T ss_dssp HHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHh
Confidence 2235677777777889999998888887776654
No 142
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.57 E-value=1e+02 Score=28.39 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=49.9
Q ss_pred HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 111 EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 111 ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
-+..=+.|+.+.+...|..+|-.. -=.....| +--.-..++-|..-..+-||+..+|..++.||..|-.
T Consensus 8 ~~~~~i~~~~~a~~~eR~~~A~~l-~~~~~~~~-~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~~~ 76 (364)
T COG5330 8 TDQDLIRLLEEASSGERALAARVL-AFASLQRP-LSREDMRQFEDLARPLLDDSSEEVRRELAAALAQCET 76 (364)
T ss_pred hHHHHHHHhcCCChhHHHHHHHHH-HHHHhcCc-ccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHhCCc
Confidence 345557888887777765555433 23334455 4444567888889999999999999999999998853
No 143
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=43.32 E-value=1.3e+02 Score=21.97 Aligned_cols=70 Identities=13% Similarity=0.059 Sum_probs=58.4
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhc
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQI 99 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~ 99 (197)
-++++.+.+++|.+--|-.|+.-+..|+.-.. .......+....+...|...|.=|=-.|-+.+.-|+..
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999997764 34555777888888889989999999999999999874
No 144
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=43.17 E-value=1.6e+02 Score=23.06 Aligned_cols=77 Identities=21% Similarity=0.111 Sum_probs=54.5
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCc-chhhhHH
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGT-FSAEYAD 109 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~-~~~~~Ve 109 (197)
..|-..++.....+-.++++-|--+|.-+... -..-...|++-|.++|+.+...|=.+|.-++.++|. +..++..
T Consensus 7 ~~I~kATs~~l~~~dw~~ileicD~In~~~~~----~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas 82 (142)
T cd03569 7 ELIEKATSELLGEPDLASILEICDMIRSKDVQ----PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVAS 82 (142)
T ss_pred HHHHHHcCcccCccCHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhh
Confidence 33444455455566778888887777654222 335667788888889999999999999999999877 5455554
Q ss_pred HH
Q psy11494 110 FE 111 (197)
Q Consensus 110 ~e 111 (197)
++
T Consensus 83 ~~ 84 (142)
T cd03569 83 RE 84 (142)
T ss_pred HH
Confidence 44
No 145
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=42.28 E-value=1.4e+02 Score=22.10 Aligned_cols=24 Identities=17% Similarity=0.495 Sum_probs=19.0
Q ss_pred hHHHHHHHhhhcCCcHHHHHHHHHHH
Q psy11494 151 QAFFDFVFSAVRDPKPEIRLHAVKAI 176 (197)
Q Consensus 151 ~~~~d~Iw~aLrDpk~~iRe~Aa~aL 176 (197)
+.+++.+...|.+|+. |++|+++|
T Consensus 125 ~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 125 SNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp SSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 3478888888877777 99998875
No 146
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=42.25 E-value=1.5e+02 Score=28.21 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=24.6
Q ss_pred CCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 121 GDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 121 ~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
..+.+..++.++--|.-+.. |..+....+-+.+.. +....+|-+|..||+
T Consensus 500 ~~~~~~~~~~~LkaLgN~g~--~~~i~~l~~~i~~~~-----~~~~~~R~~Ai~Alr 549 (618)
T PF01347_consen 500 SRGDEEEKIVYLKALGNLGH--PESIPVLLPYIEGKE-----EVPHFIRVAAIQALR 549 (618)
T ss_dssp HTT-HHHHHHHHHHHHHHT---GGGHHHHHTTSTTSS------S-HHHHHHHHHTTT
T ss_pred hccCHHHHHHHHHHhhccCC--chhhHHHHhHhhhcc-----ccchHHHHHHHHHHH
Confidence 34555666665555554432 332222222221111 558899999999988
No 147
>KOG4535|consensus
Probab=42.08 E-value=3.5e+02 Score=26.59 Aligned_cols=181 Identities=13% Similarity=0.125 Sum_probs=115.3
Q ss_pred HHHHHHHHhhhhCHHHHHHHHHHHHHH--------HHHHhhCCchhHHHHHHHHHHHHhhc-CCCc-chhhhHHHHHHHh
Q psy11494 6 GASMVRTELREVTVEEVTAFTDAFNHH--------IFEMVSANDVNEKKSGIIAIVCLLHV-DVGN-VNSRNIRFANYLR 75 (197)
Q Consensus 6 ~~~~v~~~~re~s~e~~~~~~~~l~~~--------I~~L~~s~d~~eklggI~aId~Li~~-~~~~-~~~~~~rf~~yL~ 75 (197)
|..-..+.+-+.+..+|+-|.-.+-+- |.-|...+...-----|-++..|+.- .+.. ....+++|-+.++
T Consensus 77 gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik 156 (728)
T KOG4535|consen 77 GSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIK 156 (728)
T ss_pred hhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 444455677788888888887666332 22333222211122334444444432 2222 3556899999999
Q ss_pred hhCCCCChhHHHHHHHHHHHhhhccCcc----------------------hhhhHH------------------------
Q psy11494 76 NLLPSNDIGVMRYAAKTVGKLAQISGTF----------------------SAEYAD------------------------ 109 (197)
Q Consensus 76 ~~l~~~D~~vm~~AA~~lG~L~~~gG~~----------------------~~~~Ve------------------------ 109 (197)
+.+.++|++|...+=-++|-++.+.... +.|.-+
T Consensus 157 ~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~ 236 (728)
T KOG4535|consen 157 PYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCW 236 (728)
T ss_pred HHhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcc
Confidence 9999999999999999999887653222 111110
Q ss_pred -------------------HHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHH
Q psy11494 110 -------------------FEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRL 170 (197)
Q Consensus 110 -------------------~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe 170 (197)
.++.+|+|-.. -...-|+-+.-||+-||++-. +.-.|..++...|=..+-||.+.+-+
T Consensus 237 ~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~--~ps~~rle~~qvl~~~a~~~~-~~~~~~~~l~RvI~~~~~~~~p~~~l 313 (728)
T KOG4535|consen 237 LIRLCISIVVLPKEDSCSGSDAGSAAGSTY--EPSPMRLEALQVLTLLARYFS-MTQAYLMELGRVICKCMGEADPSIQL 313 (728)
T ss_pred eeeeeeeeeecCCccccchhhHHhhhcCcc--CCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCChHHHH
Confidence 01111111111 123468888999999998854 34556677888889999999999999
Q ss_pred HHHHHHHHHHHHHhhcchh
Q psy11494 171 HAVKAIRAALVVTAQRESA 189 (197)
Q Consensus 171 ~Aa~aL~~cL~ii~~Re~~ 189 (197)
.++..|-..+.-.-+|+..
T Consensus 314 ~~a~ll~~lg~~lv~~~~P 332 (728)
T KOG4535|consen 314 HGAKLLEELGTGLIQQYKP 332 (728)
T ss_pred HHHHHHHHHHHHHhhhcCC
Confidence 9999998888777666543
No 148
>KOG1991|consensus
Probab=41.71 E-value=4.4e+02 Score=27.66 Aligned_cols=167 Identities=11% Similarity=0.033 Sum_probs=104.3
Q ss_pred HHHHHHHhhhhCHHHHHHHHHHHHHHHHHHhh----CCchhHHHHHHHHHHHHhhcCCCc--chhhhHH-HHHHHhhhCC
Q psy11494 7 ASMVRTELREVTVEEVTAFTDAFNHHIFEMVS----ANDVNEKKSGIIAIVCLLHVDVGN--VNSRNIR-FANYLRNLLP 79 (197)
Q Consensus 7 ~~~v~~~~re~s~e~~~~~~~~l~~~I~~L~~----s~d~~eklggI~aId~Li~~~~~~--~~~~~~r-f~~yL~~~l~ 79 (197)
.+++.+..+.=-.|.|++++.-+++-+..-.. ..+...|-|++.++..|.++=.-. ..+.+-. ..+++...+.
T Consensus 393 ~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~ 472 (1010)
T KOG1991|consen 393 LDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQ 472 (1010)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhc
Confidence 45666666655566677766666544433322 234556779999999998662111 1122222 4455555556
Q ss_pred CCChhHHHHHHHHHHHhhhc---cCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCch---hHhhhhHH
Q psy11494 80 SNDIGVMRYAAKTVGKLAQI---SGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTI---FYQHVQAF 153 (197)
Q Consensus 80 ~~D~~vm~~AA~~lG~L~~~---gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~---~~~~v~~~ 153 (197)
++=--+-..|++++|+.+.. --...++. +.-....|..++.-+=|.=|++-|+-+-.|-+.. +-+||+.+
T Consensus 473 s~~g~Lrarac~vl~~~~~~df~d~~~l~~a----le~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~ 548 (1010)
T KOG1991|consen 473 SPYGYLRARACWVLSQFSSIDFKDPNNLSEA----LELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPI 548 (1010)
T ss_pred CchhHHHHHHHHHHHHHHhccCCChHHHHHH----HHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHH
Confidence 66556667899999999842 11112222 2223334555667778899999999999997754 99999999
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHHHHHHHh
Q psy11494 154 FDFVFSAVRDPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 154 ~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
.+.+.... ||.=.+.|..|+.-+-
T Consensus 549 mq~lL~L~-------ne~End~Lt~vme~iV 572 (1010)
T KOG1991|consen 549 MQELLKLS-------NEVENDDLTNVMEKIV 572 (1010)
T ss_pred HHHHHHHH-------HhcchhHHHHHHHHHH
Confidence 99998654 4555566666665443
No 149
>KOG1078|consensus
Probab=41.53 E-value=4.1e+02 Score=27.28 Aligned_cols=127 Identities=16% Similarity=0.188 Sum_probs=82.8
Q ss_pred CCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccC--cchhhhHHHHHHHHH
Q psy11494 39 ANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISG--TFSAEYADFEMKKAI 116 (197)
Q Consensus 39 s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG--~~~~~~Ve~ev~~Al 116 (197)
++.-..|..-+-+|-..++.- ...|-..+.+.-.-+ -|-+.-..+-+.|+.|-+-|- .-.+.|+.+.-+|++
T Consensus 403 eGg~e~K~aivd~Ii~iie~~---pdsKe~~L~~LCefI---EDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRvi 476 (865)
T KOG1078|consen 403 EGGFEFKRAIVDAIIDIIEEN---PDSKERGLEHLCEFI---EDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVI 476 (865)
T ss_pred ccCchHHHHHHHHHHHHHHhC---cchhhHHHHHHHHHH---HhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhh
Confidence 445555655555555555431 223444454433333 355666778888888877543 345779999988887
Q ss_pred hhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 117 EWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 117 ewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
|. +..-|-|||--|..++.+.|++- +++.-.+=..+-|+...||++|.-+|+...
T Consensus 477 --LE---n~ivRaaAv~alaKfg~~~~~l~----~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 477 --LE---NAIVRAAAVSALAKFGAQDVVLL----PSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred --hh---hhhhHHHHHHHHHHHhcCCCCcc----ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 32 34467889999888886666543 334444556678999999999999888654
No 150
>KOG2759|consensus
Probab=41.51 E-value=2.1e+02 Score=27.13 Aligned_cols=130 Identities=22% Similarity=0.287 Sum_probs=74.4
Q ss_pred HHHHhhcCCCcchhhhHH-HHHHHhhhCCCCChhHHHH---HHHHHHHhhhccCcc-hhhhHHHHHHHHHhhhc------
Q psy11494 52 IVCLLHVDVGNVNSRNIR-FANYLRNLLPSNDIGVMRY---AAKTVGKLAQISGTF-SAEYADFEMKKAIEWLG------ 120 (197)
Q Consensus 52 Id~Li~~~~~~~~~~~~r-f~~yL~~~l~~~D~~vm~~---AA~~lG~L~~~gG~~-~~~~Ve~ev~~AlewL~------ 120 (197)
|..|.++=...+..|++| ....++++++.++..-++. ..-+++++.+.--.+ ...|-+.++...++.|.
T Consensus 243 i~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~s 322 (442)
T KOG2759|consen 243 IQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNS 322 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 444444433467888998 5678899999875444444 333444443321111 11122222223333221
Q ss_pred -----------------------CC-----------CcchhhHHHHHHHHHHHhh--CCchhHhhhh-------------
Q psy11494 121 -----------------------GD-----------RVEGKRHAAVLVLKELAVT--VPTIFYQHVQ------------- 151 (197)
Q Consensus 121 -----------------------~~-----------r~e~rR~AAvLvLrELa~n--aPt~~~~~v~------------- 151 (197)
.. +-...+|.=+-+|.+|.+. -|+++..--+
T Consensus 323 vq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk 402 (442)
T KOG2759|consen 323 VQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGK 402 (442)
T ss_pred HHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHh
Confidence 11 1133677777788887765 3665433211
Q ss_pred HH------HHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 152 AF------FDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 152 ~~------~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
.+ =+.|+..+.++.+.||-.|..|+..|+.
T Consensus 403 ~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 403 AVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 22 2458999999999999999999998864
No 151
>KOG1992|consensus
Probab=40.75 E-value=2e+02 Score=29.70 Aligned_cols=121 Identities=20% Similarity=0.331 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHH--HHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHH--HH
Q psy11494 18 TVEEVTAFTDAFNHHIFEMVSANDVNEKKSGII--AIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAK--TV 93 (197)
Q Consensus 18 s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~--aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~--~l 93 (197)
-.|.|+.|.+++-.-+-+|..+..+..|+-++. |+..|..+- +...+.+.+ .+.++++.=++ ++
T Consensus 278 YeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~------~r~~y~~~F------~~~~vl~~i~e~Vvl 345 (960)
T KOG1992|consen 278 YEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVS------RRPHYAELF------EGENVLAQICEKVVL 345 (960)
T ss_pred hHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH------hhhhhHhhh------cchHHHHHHHHhhcc
Confidence 356788888888888888887666555776654 455554331 011122111 23344433222 22
Q ss_pred HHhhhccCcchhhhHHHHHHHHHhhh----cCCCcchhhHHHHHHHHHHHhhC----CchhHhhhhHHHH
Q psy11494 94 GKLAQISGTFSAEYADFEMKKAIEWL----GGDRVEGKRHAAVLVLKELAVTV----PTIFYQHVQAFFD 155 (197)
Q Consensus 94 G~L~~~gG~~~~~~Ve~ev~~AlewL----~~~r~e~rR~AAvLvLrELa~na----Pt~~~~~v~~~~d 155 (197)
+.+..-+. -.|..|. .-+|++ .+...+-||=+|+=++|.|+++= -++|-.|+...++
T Consensus 346 pN~~lR~e--DeElFED---~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~ 410 (960)
T KOG1992|consen 346 PNLILREE--DEELFED---NPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLD 410 (960)
T ss_pred cccccchh--hHHHhcc---CHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 33322211 1112221 234444 46678889999999999999983 2344444444444
No 152
>KOG1077|consensus
Probab=40.41 E-value=4.2e+02 Score=27.11 Aligned_cols=113 Identities=21% Similarity=0.200 Sum_probs=83.7
Q ss_pred HHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHH
Q psy11494 51 AIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHA 130 (197)
Q Consensus 51 aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~A 130 (197)
||.-.+-+| ...+.+.|..+-|-..|...++++--.|=+.+-+|+.. ....|-|.+..+..+.-|..+|.-.-|-=
T Consensus 313 aI~l~~h~D--~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss--~~s~davK~h~d~Ii~sLkterDvSirrr 388 (938)
T KOG1077|consen 313 AISLAIHLD--SEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS--EFSIDAVKKHQDTIINSLKTERDVSIRRR 388 (938)
T ss_pred HHHHHHHcC--CcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc--cchHHHHHHHHHHHHHHhccccchHHHHH
Confidence 454444444 55778999999999999999988888899999999886 56788888888889999998887776667
Q ss_pred HHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHH
Q psy11494 131 AVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAV 173 (197)
Q Consensus 131 AvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa 173 (197)
|+=+|.-++... ...+|.+.+..-|-.-...|||.-+
T Consensus 389 avDLLY~mcD~~------Nak~IV~elLqYL~tAd~sireeiv 425 (938)
T KOG1077|consen 389 AVDLLYAMCDVS------NAKQIVAELLQYLETADYSIREEIV 425 (938)
T ss_pred HHHHHHHHhchh------hHHHHHHHHHHHHhhcchHHHHHHH
Confidence 777777777642 2344445555555556777777643
No 153
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=39.57 E-value=17 Score=24.09 Aligned_cols=15 Identities=40% Similarity=0.501 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHhh
Q psy11494 127 KRHAAVLVLKELAVT 141 (197)
Q Consensus 127 rR~AAvLvLrELa~n 141 (197)
+.|.|+-+||||++.
T Consensus 2 ~~~sGv~vlRel~r~ 16 (58)
T PF08415_consen 2 RSFSGVEVLRELARR 16 (58)
T ss_pred CcccHHHHHHHHHHh
Confidence 457899999999998
No 154
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=39.04 E-value=43 Score=20.29 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=22.6
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhh
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLH 57 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~ 57 (197)
+.-.-||+|+...|..-||.-+..|..
T Consensus 6 nyAw~Lv~S~~~~d~~~Gi~lLe~l~~ 32 (35)
T PF14852_consen 6 NYAWGLVKSNNREDQQEGIALLEELYR 32 (35)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 345679999999999999999988864
No 155
>KOG4427|consensus
Probab=37.57 E-value=1.8e+02 Score=29.88 Aligned_cols=92 Identities=15% Similarity=0.149 Sum_probs=65.3
Q ss_pred ccCcchhhhHHHHHHHHHhh---hcCCCcchhhHHHHHHHH--------------HHH-hhCCchhHhh------hhH-H
Q psy11494 99 ISGTFSAEYADFEMKKAIEW---LGGDRVEGKRHAAVLVLK--------------ELA-VTVPTIFYQH------VQA-F 153 (197)
Q Consensus 99 ~gG~~~~~~Ve~ev~~Alew---L~~~r~e~rR~AAvLvLr--------------ELa-~naPt~~~~~------v~~-~ 153 (197)
+||+-++.+|..-.+.-+|- |+++....+-+.|.|+|- |+= +..|.-.-.+ ++. +
T Consensus 522 ~G~~~gs~~~~~~~k~~~ev~~~l~s~~~~sk~~tamL~LFcdc~ahlitILDd~e~yekq~pF~lee~~~i~s~lN~~v 601 (1096)
T KOG4427|consen 522 PGPQPGSGQVNESTKDVLEVETLLGSPTGISKPVTAMLMLFCDCYAHLITILDDIEFYEKQVPFKLEELVRIASFLNTFV 601 (1096)
T ss_pred CCCCCCccccchhHHHHHhHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHH
Confidence 46677788888878877777 888889999999988872 222 3366544333 443 4
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhcchhh
Q psy11494 154 FDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAK 190 (197)
Q Consensus 154 ~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~Re~~~ 190 (197)
+..||.+.-+-...+-..--.-+..||-++++||.+.
T Consensus 602 yk~i~~g~v~eak~~t~~lF~S~h~~l~vLYeRDcRr 638 (1096)
T KOG4427|consen 602 YKGIWDGTVPEAKQLTTGLFDSAHRLLHVLYERDCRR 638 (1096)
T ss_pred HHHHHcccchhhhhHHHHHHHHHHHHHHHHHHhccCC
Confidence 5669988877655555556677888999999999764
No 156
>KOG1967|consensus
Probab=37.37 E-value=4.4e+02 Score=27.57 Aligned_cols=96 Identities=11% Similarity=0.109 Sum_probs=69.0
Q ss_pred ChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhh
Q psy11494 82 DIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAV 161 (197)
Q Consensus 82 D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aL 161 (197)
-..+.+.=+.|+|++=+ ...-...-....=-++-|.-+..+. |..+.-.+.-+...+||+.-.|++.++......=
T Consensus 884 K~~yl~~LshVl~~vP~---~vllp~~~~LlPLLLq~Ls~~D~~v-~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls 959 (1030)
T KOG1967|consen 884 KHNYLEALSHVLTNVPK---QVLLPQFPMLLPLLLQALSMPDVIV-RVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLS 959 (1030)
T ss_pred hhHHHHHHHHHHhcCCH---HhhccchhhHHHHHHHhcCCCccch-hhhHhhhhhHHHHhccccchHHHhHHHHHHHhcC
Confidence 45667777888885432 2223333333334445555444443 6788888999999999999999999999999999
Q ss_pred cCCc---HHHHHHHHHHHHHHHH
Q psy11494 162 RDPK---PEIRLHAVKAIRAALV 181 (197)
Q Consensus 162 rDpk---~~iRe~Aa~aL~~cL~ 181 (197)
+|++ ..||+.|...|.+..+
T Consensus 960 ~~~~n~~~~VR~~ALqcL~aL~~ 982 (1030)
T KOG1967|consen 960 SDNDNNMMVVREDALQCLNALTR 982 (1030)
T ss_pred CCCCcchhHHHHHHHHHHHHHhc
Confidence 9998 8999999986665443
No 157
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=37.15 E-value=4.5e+02 Score=26.45 Aligned_cols=89 Identities=20% Similarity=0.255 Sum_probs=65.5
Q ss_pred ChhHHHHHHHHHHHhhhccCc--chhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhh-hhHHHHHHH
Q psy11494 82 DIGVMRYAAKTVGKLAQISGT--FSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQH-VQAFFDFVF 158 (197)
Q Consensus 82 D~~vm~~AA~~lG~L~~~gG~--~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~-v~~~~d~Iw 158 (197)
|-++-+.+-+.||-|-+-|.. -++.||.+-.+|-+ |. +..-|-|||--|...|.|+...+.+. +...+ =
T Consensus 461 Dcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i--LE---N~ivRsaAv~aLskf~ln~~d~~~~~sv~~~l---k 532 (898)
T COG5240 461 DCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLI--LE---NNIVRSAAVQALSKFALNISDVVSPQSVENAL---K 532 (898)
T ss_pred hcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH--Hh---hhHHHHHHHHHHHHhccCccccccHHHHHHHH---H
Confidence 667778888888888775433 45778888777765 21 23458899999999999988765544 44444 4
Q ss_pred hhhcCCcHHHHHHHHHHHHH
Q psy11494 159 SAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 159 ~aLrDpk~~iRe~Aa~aL~~ 178 (197)
..+-|....||+.|+-+|+.
T Consensus 533 RclnD~DdeVRdrAsf~l~~ 552 (898)
T COG5240 533 RCLNDQDDEVRDRASFLLRN 552 (898)
T ss_pred HHhhcccHHHHHHHHHHHHh
Confidence 56789999999999998874
No 158
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=37.08 E-value=1.9e+02 Score=22.10 Aligned_cols=76 Identities=17% Similarity=0.096 Sum_probs=55.3
Q ss_pred HHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCc-chhhhHHH
Q psy11494 32 HIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGT-FSAEYADF 110 (197)
Q Consensus 32 ~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~-~~~~~Ve~ 110 (197)
.|-...++.-..+-..+++.|--+|.-.... -.--...|++-|.++++.+...|-.++.-++..+|. +..++..+
T Consensus 4 ~I~kATs~~~~~~D~~~il~icd~I~~~~~~----~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~ 79 (133)
T cd03561 4 LIERATSPSLEEPDWALNLELCDLINLKPNG----PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADK 79 (133)
T ss_pred HHHHHcCcccCCccHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhH
Confidence 3444555444556688888888888655222 334667788888889999999999999999999988 65666654
Q ss_pred H
Q psy11494 111 E 111 (197)
Q Consensus 111 e 111 (197)
+
T Consensus 80 ~ 80 (133)
T cd03561 80 E 80 (133)
T ss_pred H
Confidence 4
No 159
>KOG2274|consensus
Probab=35.45 E-value=3.9e+02 Score=27.89 Aligned_cols=141 Identities=13% Similarity=0.123 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHh-hcC----CCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHH
Q psy11494 19 VEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLL-HVD----VGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTV 93 (197)
Q Consensus 19 ~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li-~~~----~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~l 93 (197)
...+-.-|-++...|.+++.+++.+-..|+..+++.|. ++. ...-+-..........-..+.+|...+..|+
T Consensus 119 ~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~--- 195 (1005)
T KOG2274|consen 119 AVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAAR--- 195 (1005)
T ss_pred hccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhh---
Confidence 33444558888999999999888788889998888885 232 1111111111211122223467877777666
Q ss_pred HHhhhccCcchhh-----------hHHHHHHHHHhhhcC----CCc--chhhHHHHHHHHHHHhhCCchhHhhhhHHHHH
Q psy11494 94 GKLAQISGTFSAE-----------YADFEMKKAIEWLGG----DRV--EGKRHAAVLVLKELAVTVPTIFYQHVQAFFDF 156 (197)
Q Consensus 94 G~L~~~gG~~~~~-----------~Ve~ev~~AlewL~~----~r~--e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~ 156 (197)
|++-...-++..- |+...+..-.+-+.- +.. -.-|.-=.-.+..+..|-|+...+++..+|.-
T Consensus 196 ~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~ 275 (1005)
T KOG2274|consen 196 GKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSI 275 (1005)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhH
Confidence 5554433333222 333333333333321 111 12333344566788999999999999999999
Q ss_pred HHhhhc
Q psy11494 157 VFSAVR 162 (197)
Q Consensus 157 Iw~aLr 162 (197)
.|..+-
T Consensus 276 vw~~~~ 281 (1005)
T KOG2274|consen 276 VWQTLE 281 (1005)
T ss_pred HHHHHH
Confidence 997664
No 160
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=34.50 E-value=3.4e+02 Score=24.36 Aligned_cols=149 Identities=15% Similarity=0.222 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCC--C-ChhHHHHHHHHHHHhh
Q psy11494 21 EVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPS--N-DIGVMRYAAKTVGKLA 97 (197)
Q Consensus 21 ~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~--~-D~~vm~~AA~~lG~L~ 97 (197)
+.+.|++ +|.+.+-+++...+.-++ ..| ..| ......+.+|..++-.-+.. . |...+...-++.--|.
T Consensus 175 Elq~yf~----~It~a~~~~~~~~r~~aL---~sL-~tD-~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl 245 (343)
T cd08050 175 ELQLYFE----EITEALVGSNEEKRREAL---QSL-RTD-PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL 245 (343)
T ss_pred HHHHHHH----HHHHHHhCCCHHHHHHHH---HHh-ccC-CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh
Confidence 3455555 445555455544444433 332 333 22456788888888766552 2 5777777777777777
Q ss_pred hccCcchhhhHHHHHHHHHhhhcC---------CCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHH-
Q psy11494 98 QISGTFSAEYADFEMKKAIEWLGG---------DRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPE- 167 (197)
Q Consensus 98 ~~gG~~~~~~Ve~ev~~AlewL~~---------~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~- 167 (197)
....-...-|+..-+..++..|-+ +....-|--|+-+|..++++-++....--+.++..+-.++.||+-.
T Consensus 246 ~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~ 325 (343)
T cd08050 246 DNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPL 325 (343)
T ss_pred cCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCc
Confidence 777666777999999999988832 2233445555566677777755554445677777888899988533
Q ss_pred H-HHHHHHHHHH
Q psy11494 168 I-RLHAVKAIRA 178 (197)
Q Consensus 168 i-Re~Aa~aL~~ 178 (197)
- .-+|...|.+
T Consensus 326 ~~~YGAi~GL~~ 337 (343)
T cd08050 326 TTHYGAIVGLSA 337 (343)
T ss_pred chhhHHHHHHHH
Confidence 2 5666666654
No 161
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=34.37 E-value=3.1e+02 Score=23.76 Aligned_cols=132 Identities=14% Similarity=0.131 Sum_probs=83.6
Q ss_pred HHHhhCCchhHHHHHHHHHHHHhh-cCCCc-chhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH
Q psy11494 34 FEMVSANDVNEKKSGIIAIVCLLH-VDVGN-VNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE 111 (197)
Q Consensus 34 ~~L~~s~d~~eklggI~aId~Li~-~~~~~-~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e 111 (197)
-+-+.|.|...|-.|+..+...++ ++.+. +.+.+.-+..++-.-+ .|...+..|.+.+-.|++.. ....+.+..-
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl--~D~~~~~~~l~gl~~L~~~~-~~~~~~~~~i 81 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL--DDHACVQPALKGLLALVKMK-NFSPESAVKI 81 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHhCc-CCChhhHHHH
Confidence 345677888888889988877763 44221 4445666666665555 69999999999998888653 3344444444
Q ss_pred HHHHHhhhc-CCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHH---HHhhhcCCcHHH
Q psy11494 112 MKKAIEWLG-GDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDF---VFSAVRDPKPEI 168 (197)
Q Consensus 112 v~~AlewL~-~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~---Iw~aLrDpk~~i 168 (197)
++.-++..+ ..-....|+..--+|.-|..+-++-....=+.|+.. +-.+=|||+-++
T Consensus 82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl 142 (262)
T PF14500_consen 82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLL 142 (262)
T ss_pred HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHH
Confidence 444444333 223566799999999999888655444333444444 344557886554
No 162
>KOG1851|consensus
Probab=33.83 E-value=3.5e+02 Score=29.95 Aligned_cols=96 Identities=14% Similarity=0.103 Sum_probs=63.4
Q ss_pred ChhHHHHHH-HHHHHhhhccCcchhhhHHHHHHHHHh-hhcCCCcchhhHHHHHHHHHHHhhCCc-hhHhhhhHHHHHHH
Q psy11494 82 DIGVMRYAA-KTVGKLAQISGTFSAEYADFEMKKAIE-WLGGDRVEGKRHAAVLVLKELAVTVPT-IFYQHVQAFFDFVF 158 (197)
Q Consensus 82 D~~vm~~AA-~~lG~L~~~gG~~~~~~Ve~ev~~Ale-wL~~~r~e~rR~AAvLvLrELa~naPt-~~~~~v~~~~d~Iw 158 (197)
|.++.+.+| .+-+.++.. ..+.-+..|+-+.+. -...+..+.-|.|.+-+++-+.-+--. .+-.+...+.....
T Consensus 1499 ~~d~a~~~a~~~~~lm~~~---~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~ 1575 (1710)
T KOG1851|consen 1499 DVDLAKNSALLCHSLMSLS---WIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLE 1575 (1710)
T ss_pred cchHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Confidence 445555444 444444442 233334445555555 334566788888977777766655333 35666789999999
Q ss_pred hhhcCCcHHHHHHHHHHHHHHH
Q psy11494 159 SAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 159 ~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
..+-|-...+|+.|+++|+-.+
T Consensus 1576 s~l~D~~i~vre~Aa~~Lsgl~ 1597 (1710)
T KOG1851|consen 1576 SLLNDDQIEVREEAAKCLSGLL 1597 (1710)
T ss_pred HHHcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999988654
No 163
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=33.82 E-value=2.1e+02 Score=21.57 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=50.8
Q ss_pred cCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhh
Q psy11494 120 GGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQ 185 (197)
Q Consensus 120 ~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~ 185 (197)
++...-..|--+.--+.+|-+.+...+-...+++.-++-.+|..|. +|+.|.++...-+.-+..
T Consensus 24 ~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 24 SGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKTLKE 87 (107)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHhCCH
Confidence 3444555677788888899998888888899999999999999775 999999888876665543
No 164
>KOG1060|consensus
Probab=33.34 E-value=5.7e+02 Score=26.50 Aligned_cols=134 Identities=19% Similarity=0.177 Sum_probs=78.6
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcc---hhh
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTF---SAE 106 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~---~~~ 106 (197)
+..+-.|+.|+...+|+-++-=|-.+|--+ .| ++-|---+-+.+.++|++|=+..=--|=+-|----.+ .-.
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G-~d----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIn 111 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKG-KD----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSIN 111 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcC-Cc----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHH
Confidence 456999999988899998877777777333 33 3333333334456788887665433332222110000 011
Q ss_pred hHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 107 YADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 107 ~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
-++++| .|.+.--|-.|.-+|.- .-+-.-.|-++=.|=.+.+||++.||..||.|+-.|-.+
T Consensus 112 ----tfQk~L----~DpN~LiRasALRvlSs------IRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL 173 (968)
T KOG1060|consen 112 ----TFQKAL----KDPNQLIRASALRVLSS------IRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL 173 (968)
T ss_pred ----HHHhhh----cCCcHHHHHHHHHHHHh------cchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence 122332 24444455555544432 122233566777899999999999999999998876543
No 165
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.23 E-value=4.2e+02 Score=25.02 Aligned_cols=42 Identities=26% Similarity=0.341 Sum_probs=25.4
Q ss_pred HHHHHHHHHhh-CCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 131 AVLVLKELAVT-VPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 131 AvLvLrELa~n-aPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
.++.|+-|..- .|..+... ..++. +=.+.+..+|.+|..||+
T Consensus 463 ~~~~LkaLGN~g~~~~i~~l-~~~l~----~~~~~~~~iR~~Av~Alr 505 (574)
T smart00638 463 IQLYLKALGNAGHPSSIKVL-EPYLE----GAEPLSTFIRLAAILALR 505 (574)
T ss_pred eeeHHHhhhccCChhHHHHH-HHhcC----CCCCCCHHHHHHHHHHHH
Confidence 35666666633 34443222 22222 335668899999999999
No 166
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=32.88 E-value=2e+02 Score=25.39 Aligned_cols=84 Identities=14% Similarity=0.180 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcch
Q psy11494 25 FTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFS 104 (197)
Q Consensus 25 ~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~ 104 (197)
.+.++-..+++|.. .-|..|+++++.+.+-.-++ -.-+|||-+..++|++.++..
T Consensus 74 ~~~~li~~l~~la~----~~Rk~GllaLE~~~~~~~d~------Fi~~glrliVdG~~~~~I~~~--------------- 128 (266)
T COG1291 74 DYVDLIALLYELAE----KARKEGLLALEALADEIEDP------FIKDGLRLIVDGNDPEEIEAL--------------- 128 (266)
T ss_pred hHHHHHHHHHHHHH----HHHHhhHHHHHHHHHhccch------HHHHhHHHHhcCCCHHHHHHH---------------
Confidence 34445555555543 33889999999987654222 466889988888887766532
Q ss_pred hhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCch
Q psy11494 105 AEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTI 145 (197)
Q Consensus 105 ~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~ 145 (197)
.|.|+. ..|.|+..+..++...+..+|++
T Consensus 129 ---me~Ei~---------~~ee~~~~~a~~~~~~g~~aPa~ 157 (266)
T COG1291 129 ---MEEEIE---------TMEERHEKPAHAFTTAGDYAPAF 157 (266)
T ss_pred ---HHHHHH---------HHHHHHhhHHHHHHHHHhhCchh
Confidence 222221 23556667777777777777773
No 167
>PF05321 HHA: Haemolysin expression modulating protein; InterPro: IPR007985 This family consists of haemolysin expression modulating protein (Hha) from Escherichia coli and its enterobacterial homologues, such as YmoA from Yersinia enterocolitica, and RmoA encoded on the R100 plasmid. These proteins act as modulators of bacterial gene expression. Members of the Hha/YmoA/RmoA family act in conjunction with members of the H-NS family, participating in the thermoregulation of different virulence factors and in plasmid transfer []. Hha, along with the chromatin-associated protein H-NS, is involved in the regulation of expression of the toxin alpha-haemolysin in response to osmolarity and temperature []. YmoA modulates the expression of various virulence factors, such as Yop proteins and YadA adhesin, in response to temperature. RmoA is a plasmid R100 modulator involved in plasmid transfer []. The HHA family of proteins display striking similarity to the oligomerization domain of the H-NS proteins.; PDB: 1JW2_A 2K5S_A 2JQT_A.
Probab=32.57 E-value=1.6e+02 Score=20.01 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHHhhC
Q psy11494 3 IATGASMVRTELREVTVEEVTAFTDAFNHHIFEMVSA 39 (197)
Q Consensus 3 ~~~~~~~v~~~~re~s~e~~~~~~~~l~~~I~~L~~s 39 (197)
..|+-..+...--.++++++..|+....|+.-||+-+
T Consensus 9 ~dtLEkv~e~~~~~L~~~e~~~f~~AaDHR~AEL~~~ 45 (57)
T PF05321_consen 9 LDTLEKVIEHNRYKLTDDELEAFNSAADHRRAELTMG 45 (57)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHhhCcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888888888899999999999999999999863
No 168
>KOG1789|consensus
Probab=32.48 E-value=1.3e+02 Score=32.40 Aligned_cols=85 Identities=18% Similarity=0.260 Sum_probs=52.6
Q ss_pred ChhHHHHHHHHHHHhhhc-cCcc-----hhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHh-hhhHHH
Q psy11494 82 DIGVMRYAAKTVGKLAQI-SGTF-----SAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQ-HVQAFF 154 (197)
Q Consensus 82 D~~vm~~AA~~lG~L~~~-gG~~-----~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~-~v~~~~ 154 (197)
-+..|-.|++++.++... -|.+ -.++|+..+ .-++|..-+...+.--+-+-|-+.|+-.....+|. .|..|+
T Consensus 2100 ~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL-~LLd~~tL~~~~~~aas~A~Iv~aLk~~~~~l~vg~kV~EIL 2178 (2235)
T KOG1789|consen 2100 QPSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLL-QLLDSSTLNGVSNGAAARAEIVDALKSAILDLKVGQKVAEIL 2178 (2235)
T ss_pred cchHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHH-HHhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777666652 1111 123333332 34567654444444445566777787777777765 489999
Q ss_pred HH--HHhhhcCCcHH
Q psy11494 155 DF--VFSAVRDPKPE 167 (197)
Q Consensus 155 d~--Iw~aLrDpk~~ 167 (197)
|. .|.|.+|.|.-
T Consensus 2179 d~S~VWSAfKDQKHD 2193 (2235)
T KOG1789|consen 2179 DKSPVWSAFKDQKHD 2193 (2235)
T ss_pred hhhhHHHHhhhcccc
Confidence 98 99999999753
No 169
>PRK08378 hypothetical protein; Provisional
Probab=32.22 E-value=2.1e+02 Score=21.25 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=24.8
Q ss_pred hhHhhhhHHHHHHHhhhcCCcHHHHHHHHHH
Q psy11494 145 IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKA 175 (197)
Q Consensus 145 ~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~a 175 (197)
+.+.-.+-+...+|..+.-|+..+=|+|.-|
T Consensus 33 i~~~~~sll~al~~~~L~APDVAltEAAVGA 63 (93)
T PRK08378 33 VGMAAVSLFASLEFFMLQAPDVAMAEAAIGA 63 (93)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHh
Confidence 4445566777789999999999999999653
No 170
>KOG1566|consensus
Probab=31.87 E-value=4.1e+02 Score=24.37 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHHhhhccCcchhhhHHHHHHHH----HhhhcCCCcchhhHHHHHHHHHHHhhCC--chhHhhhh--HHH
Q psy11494 83 IGVMRYAAKTVGKLAQISGTFSAEYADFEMKKA----IEWLGGDRVEGKRHAAVLVLKELAVTVP--TIFYQHVQ--AFF 154 (197)
Q Consensus 83 ~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~A----lewL~~~r~e~rR~AAvLvLrELa~naP--t~~~~~v~--~~~ 154 (197)
-.+..-|..++-.+...-.+..+||.....+.- .+-|...++-.-|--+.-.|-|+...-| +++-.|+. .-+
T Consensus 180 FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enL 259 (342)
T KOG1566|consen 180 FDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENL 259 (342)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHH
Confidence 356677888998888776778899988776444 5555544443333334444555555544 47888887 888
Q ss_pred HHHHhhhcCCcHHHHHHHHHH
Q psy11494 155 DFVFSAVRDPKPEIRLHAVKA 175 (197)
Q Consensus 155 d~Iw~aLrDpk~~iRe~Aa~a 175 (197)
..+...||||+..|.-.|=..
T Consensus 260 KlmM~llrdkskniQ~eAFhv 280 (342)
T KOG1566|consen 260 KLMMNLLRDKSKNIQLEAFHV 280 (342)
T ss_pred HHHHHHhhCccccchHHHHHH
Confidence 889999999999988766543
No 171
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=31.55 E-value=2.4e+02 Score=21.63 Aligned_cols=80 Identities=19% Similarity=0.150 Sum_probs=54.5
Q ss_pred HHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCc-chhhhHHHH
Q psy11494 33 IFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGT-FSAEYADFE 111 (197)
Q Consensus 33 I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~-~~~~~Ve~e 111 (197)
|-.......+.+-.++++.|--+|.-+ .+. -.-....|++-|.++++.+...|=.++.-++..+|. +..++-.++
T Consensus 5 i~kATs~~l~~~dw~~~l~icD~i~~~-~~~---~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~ 80 (133)
T smart00288 5 IDKATSPSLLEEDWELILEICDLINST-PDG---PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKE 80 (133)
T ss_pred HHHHcCcCCCCcCHHHHHHHHHHHhCC-Ccc---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHH
Confidence 334445555566778888887777555 222 234666788888899999999999999999999776 445554444
Q ss_pred HHHHH
Q psy11494 112 MKKAI 116 (197)
Q Consensus 112 v~~Al 116 (197)
+-..+
T Consensus 81 fl~~L 85 (133)
T smart00288 81 FLNEL 85 (133)
T ss_pred HHHHH
Confidence 33333
No 172
>PF05536 Neurochondrin: Neurochondrin
Probab=30.42 E-value=1e+02 Score=29.75 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=42.3
Q ss_pred HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCc------hhHhhh-hHHHHHHHhhhcCC
Q psy11494 111 EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT------IFYQHV-QAFFDFVFSAVRDP 164 (197)
Q Consensus 111 ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt------~~~~~v-~~~~d~Iw~aLrDp 164 (197)
-+++|+.-|++.+ +..|+||.++++-+..+.|. .+|.-+ ..|++.+...=..|
T Consensus 6 ~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~ 65 (543)
T PF05536_consen 6 SLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVP 65 (543)
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCC
Confidence 4789999999988 99999999999999999883 245555 47888877665554
No 173
>smart00427 H2B Histone H2B.
Probab=28.40 E-value=1.7e+02 Score=21.60 Aligned_cols=69 Identities=20% Similarity=0.249 Sum_probs=41.8
Q ss_pred HHHHHHhhhCCC--CChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCc-----chhhHHHHHHHH-HHHh
Q psy11494 69 RFANYLRNLLPS--NDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRV-----EGKRHAAVLVLK-ELAV 140 (197)
Q Consensus 69 rf~~yL~~~l~~--~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~-----e~rR~AAvLvLr-ELa~ 140 (197)
.|+.|+.++|.+ +|..+...|=.++- ++..|++|.-...|-...+-.+. +.---|.-|+|- ||++
T Consensus 2 sy~~Yi~kvLKqVhpd~giS~kam~imn-------SfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~LpgeLak 74 (89)
T smart00427 2 TYAIYIYKVLKQVHPDTGISSKAMSIMN-------SFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLILPGELAK 74 (89)
T ss_pred cHHHHHHHHHHHhCCCccccHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHccHHHHH
Confidence 378898888875 46665554433332 56788888887788777653321 222234445554 7777
Q ss_pred hCCc
Q psy11494 141 TVPT 144 (197)
Q Consensus 141 naPt 144 (197)
+|-+
T Consensus 75 hAvs 78 (89)
T smart00427 75 HAVS 78 (89)
T ss_pred HHHH
Confidence 7644
No 174
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=28.40 E-value=62 Score=27.59 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=32.0
Q ss_pred hCCc-hhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 141 TVPT-IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 141 naPt-~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
..|+ +||.||..+-+.|=.++|-....|||++.++..
T Consensus 91 kiPa~ifyeyV~diR~RinkGlRvAE~~i~eA~~~~~~ 128 (221)
T COG1458 91 KIPAAIFYEYVEDIRERINKGLRVAEEAIREASIECYE 128 (221)
T ss_pred cCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3565 899999999999999999999999999976443
No 175
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=28.35 E-value=1.6e+02 Score=28.62 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCchhHH--H-HHHH-HHHHHhhc-CCCcchhhhHHHHHHHhhh----CCCCChhHHHHHHH
Q psy11494 21 EVTAFTDAFNHHIFEMVSANDVNEK--K-SGII-AIVCLLHV-DVGNVNSRNIRFANYLRNL----LPSNDIGVMRYAAK 91 (197)
Q Consensus 21 ~~~~~~~~l~~~I~~L~~s~d~~ek--l-ggI~-aId~Li~~-~~~~~~~~~~rf~~yL~~~----l~~~D~~vm~~AA~ 91 (197)
-+..|.+.+-.-+.+++.--+.-+. + |||. .+..++.- ...+.-..-.||..||+.+ +...|+.+.=.|+.
T Consensus 248 ~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i~~~~~~l~Gaa~~ 327 (638)
T PRK14101 248 AVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLITAEYPAFLGVSAI 327 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEEeCCChhHHHHHHH
Confidence 3555555555566666654332122 3 5664 33333321 1112122244788888765 34567888888888
Q ss_pred HHHHhhhccCcchhhhHHHHHHHHHhhhcC-CC------cchhhHHHHHHHHHHHhh---CCchhHhh
Q psy11494 92 TVGKLAQISGTFSAEYADFEMKKAIEWLGG-DR------VEGKRHAAVLVLKELAVT---VPTIFYQH 149 (197)
Q Consensus 92 ~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~-~r------~e~rR~AAvLvLrELa~n---aPt~~~~~ 149 (197)
.+-.|...-|....++.+ .|+...+-|.. ++ .++..-.+.+-++|||+. +|+.+..+
T Consensus 328 ~~~~~~~~~~~~~~~l~~-~I~~~~~~Lt~~E~~IA~yIl~n~~~v~~~si~eLA~~~~vS~aTV~Rf 394 (638)
T PRK14101 328 LAEQLSNRTGGASSAVFE-RIRQMRDALTPAERRVADLALNHPRSIINDPIVDIARKADVSQPTVIRF 394 (638)
T ss_pred HHHHhccccCCchHHHHH-HHHHHHhhcCHHHHHHHHHHHhCHHHHHhccHHHHHHHhCCCHHHHHHH
Confidence 888888776676677665 46666655532 22 244556677888999998 45555444
No 176
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=27.68 E-value=2.8e+02 Score=21.15 Aligned_cols=57 Identities=19% Similarity=0.171 Sum_probs=43.2
Q ss_pred CcchhhHHHHHHHHHHHhhCCchhHhhhh--HHHHHHHhhhcC---CcHHHHHHHHHHHHHH
Q psy11494 123 RVEGKRHAAVLVLKELAVTVPTIFYQHVQ--AFFDFVFSAVRD---PKPEIRLHAVKAIRAA 179 (197)
Q Consensus 123 r~e~rR~AAvLvLrELa~naPt~~~~~v~--~~~d~Iw~aLrD---pk~~iRe~Aa~aL~~c 179 (197)
++.+-.+-|+.+|-.+.+|.+..|+..+. .|++.+-..+.+ +...||+.+.+.+..-
T Consensus 49 ~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 49 GNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAW 110 (133)
T ss_pred CCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 45677788899999999999999988875 466665555554 3778888887776643
No 177
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=27.59 E-value=3.6e+02 Score=22.38 Aligned_cols=108 Identities=14% Similarity=0.124 Sum_probs=65.5
Q ss_pred HHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHH------HHHHHHHhhhcCCCcchhhHHHHHHHHHHH-hhCC
Q psy11494 71 ANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYAD------FEMKKAIEWLGGDRVEGKRHAAVLVLKELA-VTVP 143 (197)
Q Consensus 71 ~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve------~ev~~AlewL~~~r~e~rR~AAvLvLrELa-~naP 143 (197)
...|-.||...++. .-..|.||+++.+ .+.+.+. +|+..++-|+. .++.. -|++|-.+|. .---
T Consensus 5 kplLIsCL~~q~~k--~s~~KiL~~iVs~---Va~~v~~~~~~~W~eL~d~Ils~~--~~e~~--kA~~IF~~L~~~l~~ 75 (174)
T PF04510_consen 5 KPLLISCLTMQETK--ESDFKILRRIVSH---VAYEVFDLQEGGWDELSDCILSLS--ENEPV--KAFHIFICLPMPLYG 75 (174)
T ss_pred HHHHHHHHHhhccc--HhHHHHHHHHHHH---HHHHHHhcCCCCchhHHHHHHHhh--ccchH--HHHHHHHhCCchhhh
Confidence 34455555544443 3345677777664 2334432 46777777776 33433 3889888886 3355
Q ss_pred chhHhhhhHHHHHHHhhhcCCcH-HHH--HHHH-HHHHHHHHHHhhcc
Q psy11494 144 TIFYQHVQAFFDFVFSAVRDPKP-EIR--LHAV-KAIRAALVVTAQRE 187 (197)
Q Consensus 144 t~~~~~v~~~~d~Iw~aLrDpk~-~iR--e~Aa-~aL~~cL~ii~~Re 187 (197)
-++.+++..+++.|-..|.+|.. .+. --|. .|+.+.+.++...-
T Consensus 76 efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~ 123 (174)
T PF04510_consen 76 EFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSM 123 (174)
T ss_pred hHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhcccc
Confidence 58888999999999999999954 222 2232 34455555554443
No 178
>KOG4500|consensus
Probab=27.22 E-value=3.2e+02 Score=26.41 Aligned_cols=72 Identities=17% Similarity=0.089 Sum_probs=51.4
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCC-----CChhHHHHHHHHHHHhhhcc
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPS-----NDIGVMRYAAKTVGKLAQIS 100 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~-----~D~~vm~~AA~~lG~L~~~g 100 (197)
+.+.+.+.+.|+|.+-...|.+||.-+..-|...-.-.-..|.|-|-.++.. +|.++--.+-.++-+|+.|-
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv 392 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV 392 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC
Confidence 6778888899999999999999998887665322111122355655555543 47778888888899998873
No 179
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=27.20 E-value=2e+02 Score=22.56 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=36.4
Q ss_pred CchhHHHHHHHHHHHHhhcCCCc-chhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhh
Q psy11494 40 NDVNEKKSGIIAIVCLLHVDVGN-VNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLA 97 (197)
Q Consensus 40 ~d~~eklggI~aId~Li~~~~~~-~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~ 97 (197)
.+.......+.++.+|++...|- .......+.++|-.+|-+.++.+...|.+.|+-++
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 33344566788888887764322 22223345666777777888888888888888765
No 180
>KOG3961|consensus
Probab=26.72 E-value=1.3e+02 Score=26.23 Aligned_cols=66 Identities=18% Similarity=0.102 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHH
Q psy11494 45 KKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADF 110 (197)
Q Consensus 45 klggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ 110 (197)
++=+-.+|--|+-..+.-...-+.++.--|++.|...|.+++..+=+++-+|+..+|-...-+|-|
T Consensus 131 rf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPf 196 (262)
T KOG3961|consen 131 RFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPF 196 (262)
T ss_pred chhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhH
Confidence 344444555555444334555688899999999999999999999999999999988777776655
No 181
>PF13022 HTH_Tnp_1_2: Helix-turn-helix of insertion element transposase; PDB: 2AO9_I.
Probab=26.63 E-value=1.7e+02 Score=23.56 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=33.1
Q ss_pred HHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCC
Q psy11494 12 TELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDV 60 (197)
Q Consensus 12 ~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~ 60 (197)
...++++.+.+..+.++++.++..++.+++ +-+-||+-++...+
T Consensus 63 ey~n~la~~~~~~~~~eVy~~L~~~i~~~~-----~svKaieLflk~~G 106 (142)
T PF13022_consen 63 EYKNELADRFLSSHREEVYTQLMKKIRGGQ-----PSVKAIELFLKRHG 106 (142)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHSSS-------HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhCCC-----ccHHHHHHHHHHcC
Confidence 345777888888899999999999999998 45677777766543
No 182
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=26.42 E-value=3.6e+02 Score=21.99 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=72.6
Q ss_pred HHHHHHhhCCch-----hHHHH-HHHHHHHHhhcCCCc----chhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhcc
Q psy11494 31 HHIFEMVSANDV-----NEKKS-GIIAIVCLLHVDVGN----VNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQIS 100 (197)
Q Consensus 31 ~~I~~L~~s~d~-----~eklg-gI~aId~Li~~~~~~----~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~g 100 (197)
..+.+++.++.. .+-++ ++.|.-.|.|.+... +...+.|-++|+. .+..|.++.+.|-..|-.++..+
T Consensus 14 ~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn--~~~~d~~i~q~sLaILEs~Vl~S 91 (160)
T PF11841_consen 14 TLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVN--SSAMDASILQRSLAILESIVLNS 91 (160)
T ss_pred HHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHc--cccccchHHHHHHHHHHHHHhCC
Confidence 457888866552 23332 366667777765321 5777888999988 34459999999999998888753
Q ss_pred CcchhhhHHHH--HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCc
Q psy11494 101 GTFSAEYADFE--MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT 144 (197)
Q Consensus 101 G~~~~~~Ve~e--v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt 144 (197)
......|+.| +.+-+.-|+....+-+-.| +-++-.|-.+||.
T Consensus 92 -~~ly~~V~~evt~~~Li~hLq~~~~~iq~na-iaLinAL~~kA~~ 135 (160)
T PF11841_consen 92 -PKLYQLVEQEVTLESLIRHLQVSNQEIQTNA-IALINALFLKADD 135 (160)
T ss_pred -HHHHHHHhccCCHHHHHHHHHcCCHHHHHHH-HHHHHHHHhcCCh
Confidence 4456778777 4667777887555554444 4444555556654
No 183
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=25.52 E-value=5e+02 Score=23.42 Aligned_cols=75 Identities=15% Similarity=0.061 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhh
Q psy11494 24 AFTDAFNHHIFEMVSANDV-NEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQ 98 (197)
Q Consensus 24 ~~~~~l~~~I~~L~~s~d~-~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~ 98 (197)
+|.+.+.+++.+|+.+++. -.-+--=.++-.|++...-+.-..++..-.....|+.++|+.+=..|=.+|.++.-
T Consensus 228 ~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 228 KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 6888889999999988442 11222223334445432234445566666777889999999999999999998876
No 184
>PF14961 BROMI: Broad-minded protein
Probab=25.48 E-value=2e+02 Score=30.76 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhh--hhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 107 YADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQH--VQAFFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 107 ~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~--v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
|.+.+.+-.++=|..++.-.=|++|+-+ |+..-|+.+... =+.+.+++-.+|-||+..|.+.+.......|.
T Consensus 158 F~qe~lq~i~d~ld~~~P~evR~eAlq~---Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fs 231 (1296)
T PF14961_consen 158 FCQEQLQLIADKLDPGQPKEVRLEALQI---LCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFS 231 (1296)
T ss_pred hcHHHHHHHHHhcCCCCchHHHHHHHHH---HhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 4577888889999888888889999766 788888877655 68999999999999999999999887766554
No 185
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=25.36 E-value=2e+02 Score=21.43 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=28.3
Q ss_pred hhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Q psy11494 15 REVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVC 54 (197)
Q Consensus 15 re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~ 54 (197)
.-+|.++|....+++|..+.+-...-...--+++++++-.
T Consensus 28 ~~is~~ef~~iI~~IN~~l~~a~~~~~~~~~~~~~l~~lt 67 (118)
T PF10256_consen 28 GYISPEEFEEIINTINQILKEAFEPISWRNIIENILGCLT 67 (118)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 3488999999999999987776544344445666666644
No 186
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=25.31 E-value=3.2e+02 Score=21.61 Aligned_cols=71 Identities=11% Similarity=0.194 Sum_probs=53.8
Q ss_pred HHHHHHhhhc-------CCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCc----------HHHHHHHH
Q psy11494 111 EMKKAIEWLG-------GDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPK----------PEIRLHAV 173 (197)
Q Consensus 111 ev~~AlewL~-------~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk----------~~iRe~Aa 173 (197)
-.-+-++|-. ++....|+.+=.-++-.|+.+==++|.+|..-++|..=..|..-+ ..++....
T Consensus 60 lF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~~~~~~~~~~~~~~~L~~~vL 139 (153)
T PF08146_consen 60 LFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQFNSSKTESKSKSWELWRLVL 139 (153)
T ss_pred HHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 3445567764 234556777777788889999999999999999999666665554 68889999
Q ss_pred HHHHHHHH
Q psy11494 174 KAIRAALV 181 (197)
Q Consensus 174 ~aL~~cL~ 181 (197)
.+|+.|+.
T Consensus 140 ~~L~~~F~ 147 (153)
T PF08146_consen 140 STLQKCFL 147 (153)
T ss_pred HHHHHHHh
Confidence 99999985
No 187
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=24.91 E-value=3.4e+02 Score=21.26 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=50.6
Q ss_pred HHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCc-chhhhHHHH
Q psy11494 33 IFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGT-FSAEYADFE 111 (197)
Q Consensus 33 I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~-~~~~~Ve~e 111 (197)
|-...+..-+.+-.++|+.|--+|.-+. +. ..--...+++-|.++++.+...|=.++--++..+|. +..++..++
T Consensus 6 iekAT~~~l~~~dw~~ileicD~In~~~-~~---~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~ 81 (139)
T cd03567 6 LNKATNPSNREEDWEAIQAFCEQINKEP-EG---PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFR 81 (139)
T ss_pred HHHHcCccCCCCCHHHHHHHHHHHHcCC-cc---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHH
Confidence 3334444445667788888877776542 22 223455677778889999999999999999998877 444444433
No 188
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=24.90 E-value=4e+02 Score=22.02 Aligned_cols=131 Identities=14% Similarity=0.053 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHH-HHHHHHHHhhhccCcchhh
Q psy11494 28 AFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMR-YAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 28 ~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~-~AA~~lG~L~~~gG~~~~~ 106 (197)
++...+-+|.+++--+.++.|+.-+..-... -+...+..+-.++.. .+.-.++- .+..++|.+.... .+
T Consensus 46 ~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~---~~~~~~~~~~~~l~~---~~~Wd~vD~~~~~i~g~~~~~~----~~ 115 (208)
T cd07064 46 ELWELVLELWQQPEREYQYVAIDLLRKYKKF---LTPEDLPLLEELITT---KSWWDTVDSLAKVVGGILLADY----PE 115 (208)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHcC---CchHHHHHHHHHHHhHHHHhCC----hh
Confidence 3455566788888756676665443332211 122234444444444 34444444 4666777765431 11
Q ss_pred hHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 107 YADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 107 ~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
..+...+|..++....||.|-+..++ ..++ + ....+++.|=..+.|+.-.|+-+-.=+|+.+
T Consensus 116 ----~~~~l~~W~~s~~~W~rR~ai~~~l~-~~~~--~----~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~ 177 (208)
T cd07064 116 ----FEPVMDEWSTDENFWLRRTAILHQLK-YKEK--T----DTDLLFEIILANLGSKEFFIRKAIGWALREY 177 (208)
T ss_pred ----HHHHHHHHHcCCcHHHHHHHHHHHHH-HHHc--c----CHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 14677899999999999999887665 3332 1 1246666777789999999999988888754
No 189
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=24.71 E-value=3.6e+02 Score=22.99 Aligned_cols=101 Identities=16% Similarity=0.180 Sum_probs=53.9
Q ss_pred HHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHH--HHHHHHHhhCCchhH
Q psy11494 70 FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAV--LVLKELAVTVPTIFY 147 (197)
Q Consensus 70 f~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAv--LvLrELa~naPt~~~ 147 (197)
...++-..+.++|.+- +.|+..+|.|..--++++.+.+-.-++.+++-++..+....+.-=. -+|..|+.. |.+-|
T Consensus 8 v~~~~l~~l~~~~l~~-k~~~dii~~L~~El~~lp~~~Lv~l~~~~v~~i~~g~~~~~~~ldLlP~~Ls~L~~~-~~i~~ 85 (223)
T PF14675_consen 8 VYKCCLKLLESGDLSE-KQASDIIGRLMLELHSLPGEHLVELAELCVDSIRSGDNKNGKWLDLLPKCLSALSAS-ESINY 85 (223)
T ss_dssp HHHHHHHHHHHS---H-HHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHS---S-STTTTHHHHHHHHHHT--S--SS
T ss_pred HHHHHHHHcccCCcCH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHhcC-ccccc
Confidence 3344444456677776 8899999999988778887777777777777776544433332111 122335444 55443
Q ss_pred h--------hhhHHHHHHHhhhcCCcHHHHHHH
Q psy11494 148 Q--------HVQAFFDFVFSAVRDPKPEIRLHA 172 (197)
Q Consensus 148 ~--------~v~~~~d~Iw~aLrDpk~~iRe~A 172 (197)
. |-.++++.|-..=|+|...+.-++
T Consensus 86 ~~~~~sG~eyK~~iI~~lc~~~W~~~~l~~l~~ 118 (223)
T PF14675_consen 86 NGGELSGEEYKKQIINSLCSSRWPPQILIQLAS 118 (223)
T ss_dssp SS----HHHHHHHHHHHHHHS---TTTHHHHHH
T ss_pred ccccccchHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 2 566777777777777776665543
No 190
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=24.71 E-value=57 Score=20.65 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHH
Q psy11494 105 AEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFV 157 (197)
Q Consensus 105 ~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~I 157 (197)
..+-+..++.|++|+......- ...++...|.-+...|++.|
T Consensus 10 ~~i~~g~~~~a~~~~~~~~~~l-----------~~~~~~l~f~L~~q~~lell 51 (58)
T smart00668 10 ELILKGDWDEALEWLSSLKPPL-----------LERNSKLEFELRKQKFLELV 51 (58)
T ss_pred HHHHcCCHHHHHHHHHHcCHHH-----------hccCCCchhHHHHHHHHHHH
Confidence 3455567889999997543322 33456667777777777765
No 191
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=24.50 E-value=2.3e+02 Score=28.88 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=37.8
Q ss_pred chhhHHHHHHHHHHHhh-CCchhHhhhhHHHHH--HHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 125 EGKRHAAVLVLKELAVT-VPTIFYQHVQAFFDF--VFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 125 e~rR~AAvLvLrELa~n-aPt~~~~~v~~~~d~--Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
..-|=+++.++-.+-+. +.|..-+ +...+-+ +-.|+-||...+|.+|+.||...+
T Consensus 358 ~~IRdss~f~vWs~~r~~S~s~~~~-lqt~L~hll~~~alFDpel~vRr~a~Aal~E~i 415 (993)
T COG5234 358 QSIRDSSCFFVWSFYRCYSKSAIEG-LQTNLIHLLLQTALFDPELNVRRAATAALFEVI 415 (993)
T ss_pred ceeecccceeeeeeeeccccccchh-HHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHh
Confidence 35677888877777666 3333333 4443333 445999999999999999987654
No 192
>cd07356 HN_L-whirlin_R1_like First harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains. This subgroup contains the first of two harmonin_N_like domains of the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. This first harmonin_N_like domain precedes PDZ1, and is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. This first harmonin_N_like domain has been assayed for interaction with the cytoplasmic domain of cadherin 23 (a component of the Usher network and an interacting partner of the harmonin N-domain), however no interaction could be detected. Th
Probab=24.40 E-value=1.5e+02 Score=21.46 Aligned_cols=61 Identities=20% Similarity=0.347 Sum_probs=34.5
Q ss_pred HHHHHHHhhhhCHHHHHHHHHHHHHH--HHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChh
Q psy11494 7 ASMVRTELREVTVEEVTAFTDAFNHH--IFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIG 84 (197)
Q Consensus 7 ~~~v~~~~re~s~e~~~~~~~~l~~~--I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~ 84 (197)
+..+....-|--.+.|....|....+ +++|++|=.+ ++ + ++. -.....+|+.++|..|.-
T Consensus 9 h~~l~~lLs~~Er~~f~h~Ln~Y~~~RnV~~Lv~sL~~------------vL--d---~P~-KrqllplLr~vIP~sDq~ 70 (78)
T cd07356 9 HNALTKLLSEAEREEFIHCLNDYHAKRNVYDLVQSLKV------------VL--D---TPE-KRQLLPLLRLVIPRSDQL 70 (78)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHhcccHHHHHHHHHH------------Hh--C---CHh-HhHHHHHHHHHcccHHHH
Confidence 34444444444455566666655432 6666655332 23 2 222 345788999999988764
Q ss_pred H
Q psy11494 85 V 85 (197)
Q Consensus 85 v 85 (197)
+
T Consensus 71 l 71 (78)
T cd07356 71 L 71 (78)
T ss_pred H
Confidence 3
No 193
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=24.37 E-value=6e+02 Score=23.91 Aligned_cols=175 Identities=11% Similarity=0.101 Sum_probs=90.5
Q ss_pred HHHHHHHhhhhCHHH---HHHHHHH------HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCc-chhhhHHHHHHHhh
Q psy11494 7 ASMVRTELREVTVEE---VTAFTDA------FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGN-VNSRNIRFANYLRN 76 (197)
Q Consensus 7 ~~~v~~~~re~s~e~---~~~~~~~------l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~-~~~~~~rf~~yL~~ 76 (197)
..||.+..-||=.+. ..-|.+. .+...+.+++++|.-=..-+...+..|+..+... ...-...|.++|..
T Consensus 71 vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~ 150 (429)
T cd00256 71 VRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKE 150 (429)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHH
Confidence 345555555554442 2234332 3555667777777544445555555566443221 12234458888988
Q ss_pred hCCCC-ChhHHHHHHHHHHHhhhccCcchhhhHHHH-HHHHHhhhcCCC-cchhhHHHHHHHHHHHhhCCchhHhhhhHH
Q psy11494 77 LLPSN-DIGVMRYAAKTVGKLAQISGTFSAEYADFE-MKKAIEWLGGDR-VEGKRHAAVLVLKELAVTVPTIFYQHVQAF 153 (197)
Q Consensus 77 ~l~~~-D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e-v~~AlewL~~~r-~e~rR~AAvLvLrELa~naPt~~~~~v~~~ 153 (197)
.+.++ +......|..+++.|++..... .-|++.. ++.-++-|+... .-.--|=+++++--|+-+.+..-...-..+
T Consensus 151 ~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~ 229 (429)
T cd00256 151 QLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSL 229 (429)
T ss_pred HhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccH
Confidence 88754 5788888899999998865432 3344332 333333343322 223345556666656555443222222334
Q ss_pred HHHHHhhhcCC-cHHHHHHHHHHHHHHHHH
Q psy11494 154 FDFVFSAVRDP-KPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 154 ~d~Iw~aLrDp-k~~iRe~Aa~aL~~cL~i 182 (197)
+..+-..+++. |.=|=.-+..+|+.++.-
T Consensus 230 i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 230 IQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 44444444433 444444455556655543
No 194
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=24.28 E-value=1.3e+02 Score=21.16 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.5
Q ss_pred HHhhhhCHHHHHHHHHHHHHHHHHHh
Q psy11494 12 TELREVTVEEVTAFTDAFNHHIFEMV 37 (197)
Q Consensus 12 ~~~re~s~e~~~~~~~~l~~~I~~L~ 37 (197)
.+.|++|.|++....+++-..+|+|=
T Consensus 6 ~elR~~s~eeL~~~l~eLK~ELf~LR 31 (69)
T COG0255 6 KELREKSVEELEEELRELKKELFNLR 31 (69)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999887777764
No 195
>KOG0185|consensus
Probab=24.24 E-value=1.1e+02 Score=26.64 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=30.7
Q ss_pred hHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhcchhh
Q psy11494 151 QAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAK 190 (197)
Q Consensus 151 ~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~Re~~~ 190 (197)
.+++..-|. .+-+..-||.|.+++..|+++++-||.+-
T Consensus 181 ~P~lR~~~~--~k~~~~s~eeA~~li~~cMrVL~YRD~ra 218 (256)
T KOG0185|consen 181 LPLLRDEWE--KKGEDLSREEAEALIEKCMRVLYYRDARA 218 (256)
T ss_pred hHHHHHhhh--ccchhhHHHHHHHHHHHHHHHHhcccccc
Confidence 466666676 45577889999999999999999999653
No 196
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=24.22 E-value=2.8e+02 Score=22.14 Aligned_cols=69 Identities=14% Similarity=0.247 Sum_probs=43.9
Q ss_pred HhhhccCcchhh-hHH--HHHHHHHhhhcCCCcchhhHHHHHH--HHHHHhhCCchhHhhhhHHHHHHHhhhcCCc
Q psy11494 95 KLAQISGTFSAE-YAD--FEMKKAIEWLGGDRVEGKRHAAVLV--LKELAVTVPTIFYQHVQAFFDFVFSAVRDPK 165 (197)
Q Consensus 95 ~L~~~gG~~~~~-~Ve--~ev~~AlewL~~~r~e~rR~AAvLv--LrELa~naPt~~~~~v~~~~d~Iw~aLrDpk 165 (197)
+|-.||-+..++ |.+ ..++.|+++|.... +=|=|.+-. .|++-.+|=+++-.|+...+..+=..+-+|+
T Consensus 84 ~Ln~p~~sV~~~~F~~~L~~LD~cl~Fl~~h~--~fkea~~Y~~rf~q~ltRAl~lIk~y~~~~l~~~~~~vl~~~ 157 (157)
T PF04136_consen 84 RLNSPGSSVNSDSFKPMLSRLDECLEFLEEHP--NFKEAEVYLIRFRQCLTRALTLIKNYVVNTLRSATNQVLKPK 157 (157)
T ss_pred HHcCCCCcccchHHHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344455444443 666 46999999998533 122233322 2467777888888898888888776666554
No 197
>PF09088 MIF4G_like: MIF4G like; InterPro: IPR015172 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 1", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=23.90 E-value=3e+02 Score=23.04 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=37.1
Q ss_pred HHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 133 LVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 133 LvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
-+|.||++.+|..+-+-+.+-++.++..+-+=+...+..=++=++.=|
T Consensus 94 sllielCk~~P~~i~pv~~~air~ly~~l~~md~e~~~Rf~dWfS~hL 141 (191)
T PF09088_consen 94 SLLIELCKLSPSAIPPVLGRAIRFLYRNLDSMDFELRDRFVDWFSHHL 141 (191)
T ss_dssp HHHHHHHHHSTTTHHHHHHHHHHHHHHGGGGB-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Confidence 456699999999999999999999999887777777666665555433
No 198
>KOG1062|consensus
Probab=23.40 E-value=8.3e+02 Score=25.20 Aligned_cols=147 Identities=17% Similarity=0.209 Sum_probs=83.3
Q ss_pred HHHhhCCchhHHHHHHHHHHHHhhcCC-------------------------------CcchhhhHHHHHHHhhhCCCCC
Q psy11494 34 FEMVSANDVNEKKSGIIAIVCLLHVDV-------------------------------GNVNSRNIRFANYLRNLLPSND 82 (197)
Q Consensus 34 ~~L~~s~d~~eklggI~aId~Li~~~~-------------------------------~~~~~~~~rf~~yL~~~l~~~D 82 (197)
..|++|++--||-=|-+|.--|+|-.- .-++....-++.-+.+++...|
T Consensus 76 lKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~ 155 (866)
T KOG1062|consen 76 LKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRD 155 (866)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCC
Confidence 468889988888888777766664320 1124444555666666666667
Q ss_pred hhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchh---HhhhhHHHHHHHh
Q psy11494 83 IGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIF---YQHVQAFFDFVFS 159 (197)
Q Consensus 83 ~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~---~~~v~~~~d~Iw~ 159 (197)
+-+-++|+-|.-|+.+.- -|.+|+-+...-+-|. ++...==.+++.++.||++..|..+ -..+++|+.-+=.
T Consensus 156 ~~irKKA~Lca~r~irK~----P~l~e~f~~~~~~lL~-ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~ 230 (866)
T KOG1062|consen 156 PYIRKKAALCAVRFIRKV----PDLVEHFVIAFRKLLC-EKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQ 230 (866)
T ss_pred HHHHHHHHHHHHHHHHcC----chHHHHhhHHHHHHHh-hcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666652 3334433333333332 3444445677778888888866533 2324444443332
Q ss_pred -------------hhcCCcHHHHHH------------HHHHHHHHHHHHhh
Q psy11494 160 -------------AVRDPKPEIRLH------------AVKAIRAALVVTAQ 185 (197)
Q Consensus 160 -------------aLrDpk~~iRe~------------Aa~aL~~cL~ii~~ 185 (197)
++-||=.+||-- |.+++...|.-+.+
T Consensus 231 l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvat 281 (866)
T KOG1062|consen 231 LTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVAT 281 (866)
T ss_pred HhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 344665566543 55555555554444
No 199
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=23.15 E-value=1.9e+02 Score=30.70 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhh
Q psy11494 127 KRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQ 185 (197)
Q Consensus 127 rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~ 185 (197)
+=--|+.+|-||+..-...+-.|+|..+-.++..+=+..+.|||.|.+.|-..+--+.-
T Consensus 932 ~~qlalifL~dl~~~~~~~~~~~lP~LLH~~~~~lDH~~~~V~e~a~~lL~~Li~~l~~ 990 (1120)
T PF14228_consen 932 RGQLALIFLVDLAVEPDEDLREHLPLLLHVIFVLLDHYTPLVQEQARELLVNLIHSLAP 990 (1120)
T ss_pred HHHHHHHHHHHHHcCCcchHhhhhHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHHhc
Confidence 34468899999999888899999999999999999999999999999998877665543
No 200
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=22.89 E-value=1.5e+02 Score=21.92 Aligned_cols=43 Identities=21% Similarity=0.437 Sum_probs=27.3
Q ss_pred cCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHH--HHHHhhCCchh
Q psy11494 100 SGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVL--KELAVTVPTIF 146 (197)
Q Consensus 100 gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvL--rELa~naPt~~ 146 (197)
++.+|.+||+. -++|....+.=++||+-..++ +++-++-||++
T Consensus 49 ~~~it~efv~~----mie~FK~~K~Lhkkyv~~Il~~~~~llk~~PslV 93 (95)
T PF08321_consen 49 DEPITLEFVKA----MIEWFKNQKKLHKKYVYQILLEAKKLLKQLPSLV 93 (95)
T ss_dssp TTB--HHHHHH----HHHHHHCT----HHHHHHHHHHHHHHHHTS-SEE
T ss_pred CCCCCHHHHHH----HHHHHHhCCCccHHHHHHHHHHHHHHHHhCcCcc
Confidence 35678888755 567888888889999988776 57888888875
No 201
>KOG0567|consensus
Probab=22.76 E-value=5.6e+02 Score=22.95 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=18.9
Q ss_pred HHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 157 VFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 157 Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
+=.-+.||...||+...-||..+.
T Consensus 256 L~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 256 LKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHH
Confidence 344567999999999999988653
No 202
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=22.48 E-value=1.5e+02 Score=22.42 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=35.5
Q ss_pred HHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHh
Q psy11494 110 FEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFS 159 (197)
Q Consensus 110 ~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~ 159 (197)
.-++..=.|+..+..+..|- +.-+|.+..+..=-+++|.+|.+-+.||.
T Consensus 42 ~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~~~~~ll~P~~P~~aEeiw~ 90 (153)
T PF08264_consen 42 WYLELIKPWLYCKDDDESRE-AQYTLYEILKILLILLSPFMPFIAEEIWQ 90 (153)
T ss_dssp HHHHHHHHHHCTTTTCHHHH-HHHHHHHHHHHHHHHHTTTSHHHHHHHHH
T ss_pred HHHHhcccchhcccchhHHH-HHHHHHHHHHHHhhccCCCCcHHHHHHHH
Confidence 33445556776544444355 77788888888778999999999999993
No 203
>KOG2149|consensus
Probab=21.94 E-value=4.1e+02 Score=24.86 Aligned_cols=97 Identities=18% Similarity=0.117 Sum_probs=67.0
Q ss_pred CChhHHHHHHHHHHHhhhccCcchhhhHHHH---HHHHHhhhcCCCcchhhHHHHHHHHHHHhh-CCchhHhhhhHHHHH
Q psy11494 81 NDIGVMRYAAKTVGKLAQISGTFSAEYADFE---MKKAIEWLGGDRVEGKRHAAVLVLKELAVT-VPTIFYQHVQAFFDF 156 (197)
Q Consensus 81 ~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e---v~~AlewL~~~r~e~rR~AAvLvLrELa~n-aPt~~~~~v~~~~d~ 156 (197)
-...|=+-|-.-+=.+... -.+.+..+ +-..+-=+..|+.-.-|-+....+..+..+ +|-..-++++-++..
T Consensus 70 hNakvRkdal~glkd~l~s----~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~y 145 (393)
T KOG2149|consen 70 HNAKVRKDALNGLKDLLKS----HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPY 145 (393)
T ss_pred chHhhhHHHHHHHHHHHHh----ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHH
Confidence 3666666666666555543 12222222 222222223466667788888888886655 777889999999999
Q ss_pred HHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 157 VFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 157 Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
|..|+.+..+.||+.+...|+-.+.
T Consensus 146 i~~AMThit~~i~~dslkfL~~Ll~ 170 (393)
T KOG2149|consen 146 ISSAMTHITPEIQEDSLKFLSLLLE 170 (393)
T ss_pred HHHHHhhccHHHHHhhHHHHHHHHH
Confidence 9999999999999999999886554
No 204
>KOG4844|consensus
Probab=21.84 E-value=1e+02 Score=23.07 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHhhhccCcchhh-hHHHHHH
Q psy11494 83 IGVMRYAAKTVGKLAQISGTFSAE-YADFEMK 113 (197)
Q Consensus 83 ~~vm~~AA~~lG~L~~~gG~~~~~-~Ve~ev~ 113 (197)
..|.+..|+.+|+...|.|..+.. |+..+++
T Consensus 9 ~~v~elsakIFg~~~np~g~Rtg~Kil~~~Lk 40 (102)
T KOG4844|consen 9 RGVTELSAKIFGHMLNPTGQRTGHKILRKKLK 40 (102)
T ss_pred HHHHHHHHHHHhcccCCCCCcchhHHHHHHhc
Confidence 357889999999999999987754 7766644
No 205
>KOG1822|consensus
Probab=21.77 E-value=1.2e+03 Score=26.57 Aligned_cols=170 Identities=12% Similarity=0.079 Sum_probs=96.2
Q ss_pred HHHHHHhhhhCHHHHHHHHHHHHHHHHHHh-hCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCC-C--CCh
Q psy11494 8 SMVRTELREVTVEEVTAFTDAFNHHIFEMV-SANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLP-S--NDI 83 (197)
Q Consensus 8 ~~v~~~~re~s~e~~~~~~~~l~~~I~~L~-~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~-~--~D~ 83 (197)
.|...-.-|.+.|..-.---+..+++.+.+ +..+..-++--..||..|+.. ++.- ...++.++....+. . .|+
T Consensus 31 ~~l~~~l~~~~ke~~l~tQ~~~~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~--gd~f-~~~~~l~~c~d~l~d~~~~~~ 107 (2067)
T KOG1822|consen 31 RYLERNLNEEQKEDLLVTQLKLEQQLISRLTNGAGPPTRKLISVAIARLISN--GDSF-SLYSRLNSCNDFLSDGSPSDP 107 (2067)
T ss_pred HHHHhcCCcchhHHHHHHhHHHHHHHHHHHccCCCchhHHHHHHHHHHHHhc--cchh-hHHHHHHHhhhhhhcCCCccH
Confidence 455555556666654443333444555555 455555577788889999866 3321 13344445444443 2 588
Q ss_pred hHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCC--chhHhhhhHHHHHHHhhh
Q psy11494 84 GVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVP--TIFYQHVQAFFDFVFSAV 161 (197)
Q Consensus 84 ~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naP--t~~~~~v~~~~d~Iw~aL 161 (197)
+-...|..++|++-..=|.+...=.+.-+..-..|....-.-.++.... .+.-+.+-+. +--+.....+.-.+...+
T Consensus 108 q~k~~a~~~l~~~y~~~g~~~~~~~edt~~if~~~~k~n~s~~~~~i~~-~l~~~~~~~g~~s~~~~~~k~i~l~~k~~l 186 (2067)
T KOG1822|consen 108 QRKLAALSCLGSLYEHYGRMIGRGLEDTVQIFTKLVKTNESFVRQEIMI-TLHNALKGMGGTSAATATHKAIRLIAKNSL 186 (2067)
T ss_pred HHHHhhccchHHHHHHhhHhhcchHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhccchHHHHHHHHHHHHHhhhh
Confidence 8888899999988877554432212222222233333222223444443 3344444433 444445556666677788
Q ss_pred cCCcHHHHHHHHHHHHHHHH
Q psy11494 162 RDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 162 rDpk~~iRe~Aa~aL~~cL~ 181 (197)
-|.+..+|.+|+.++.+.-.
T Consensus 187 ld~s~~v~iaa~rc~~a~s~ 206 (2067)
T KOG1822|consen 187 LDRSFNVKIAAARCLKAFSN 206 (2067)
T ss_pred hhhhHHHHHHhHHHHHHHHh
Confidence 88899999999987765443
No 206
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=21.70 E-value=2.6e+02 Score=19.69 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=29.4
Q ss_pred HHHHHHhhcCCCcchhhhHHHHHHHhhhC-CCC-----ChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcC
Q psy11494 50 IAIVCLLHVDVGNVNSRNIRFANYLRNLL-PSN-----DIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGG 121 (197)
Q Consensus 50 ~aId~Li~~~~~~~~~~~~rf~~yL~~~l-~~~-----D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~ 121 (197)
.++..|...+.......+.|-..||...- +.+ ..+-+..++.+++-++..+.. . -+..++++++||-.
T Consensus 31 ~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~~~~~~t~~~~~~l~~~~~~-~---~~~~~~r~~~wi~~ 104 (109)
T PF13243_consen 31 ALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGGEYVSMTAAAIAALALAGVY-P---DDEAVERGLEWILS 104 (109)
T ss_dssp ----------TS-SSBSSHHHHHHHHH---TTS--S-TS--HHHHHHHHHHHHHHHHTT------HHHHHHHHHHHHH
T ss_pred cccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCCCCHHHHHHHHHHHHHhCCC-C---CCHHHHHHHHHHHH
Confidence 33344444443345556788888887763 221 111222334445555443221 1 45568999999953
No 207
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=21.66 E-value=65 Score=24.49 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHhhhcCCC
Q psy11494 105 AEYADFEMKKAIEWLGGDR 123 (197)
Q Consensus 105 ~~~Ve~ev~~AlewL~~~r 123 (197)
..+.+.+++.|++|++..+
T Consensus 10 ~~I~~g~i~~Ai~w~~~~~ 28 (145)
T PF10607_consen 10 QAILNGDIDPAIEWLNENF 28 (145)
T ss_pred HHHHcCCHHHHHHHHHHcC
Confidence 3456677888888887543
No 208
>smart00126 IL6 Interleukin-6 homologues. Family includes granulocyte colony-stimulating factor (G-CSF) and myelomonocytic growth factor (MGF). IL-6 is also known as B-cell stimulatory factor 2.
Probab=21.62 E-value=1.8e+02 Score=23.60 Aligned_cols=69 Identities=19% Similarity=0.301 Sum_probs=40.4
Q ss_pred HHHHHhhhCCCC--ChhHHHHHHHHHHHhhhc----cCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHH
Q psy11494 70 FANYLRNLLPSN--DIGVMRYAAKTVGKLAQI----SGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELA 139 (197)
Q Consensus 70 f~~yL~~~l~~~--D~~vm~~AA~~lG~L~~~----gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa 139 (197)
+-.||...+|+. ...+|..-+++|..+... .|..+.--. ..-...+.=|++...+.|+..+.+|||.|=
T Consensus 69 ~L~~l~~~f~~~~~~v~~l~~~~~~L~~~l~~k~k~~~~v~~p~p-~~~~~ll~~l~s~~~W~r~~t~~lILr~Le 143 (154)
T smart00126 69 YLEYLQNEFPENKENVDTLQLDTKTLIQIIQQEMKDLGKITYPTP-TANRGLLPKLQSQNQWVRNATGFLILSSLE 143 (154)
T ss_pred HHHHHHHhCccccccHHHHHHHHHHHHHHHHHHhhCcCccccCCC-ccchhhhhhccCccHHHHHHHHHHHHHHHH
Confidence 444555667743 557788888888888753 221110000 011123344555566679999999999863
No 209
>PRK09103 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=21.30 E-value=6.5e+02 Score=25.53 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCch
Q psy11494 83 IGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTI 145 (197)
Q Consensus 83 ~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~ 145 (197)
....+.+.++.-.+ .-|.-+.|+-+..++-|.+.+..+-.+..++||-+.+..|-++++.-
T Consensus 33 ~~~~~l~~~~~~~~--~~~~t~~e~~~~~~~~a~~~~~~~~pdy~~~Aarl~~~~l~k~~~~~ 93 (758)
T PRK09103 33 VSVSQVELRSHIQF--YDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQ 93 (758)
T ss_pred CCHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHhCcccCCcHHHHHHHHHHHHHHHHHHcc
Confidence 34446677776665 55566788888899999998876777788999999999999887654
No 210
>PRK15376 pathogenicity island 1 effector protein SipA; Provisional
Probab=21.29 E-value=7.8e+02 Score=24.06 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=47.2
Q ss_pred HHHHhhhhCHHHHHHHHHHHHHHHHH-HhhCCchhHHHHHHHHHHHHhhcCCCc--chhhhHHHHHHHhhhCCCC-----
Q psy11494 10 VRTELREVTVEEVTAFTDAFNHHIFE-MVSANDVNEKKSGIIAIVCLLHVDVGN--VNSRNIRFANYLRNLLPSN----- 81 (197)
Q Consensus 10 v~~~~re~s~e~~~~~~~~l~~~I~~-L~~s~d~~eklggI~aId~Li~~~~~~--~~~~~~rf~~yL~~~l~~~----- 81 (197)
+.+.++|.-+-+...|-..++++-.+ |++++.-.|+++.|+-= +.+ ...-+..|++.++.++..+
T Consensus 24 ~~~~s~~~~~~qle~f~a~~~q~sl~~LF~~~~~ad~Lkeiy~~-------S~N~~AK~eI~EFA~v~~s~~~q~~~~p~ 96 (670)
T PRK15376 24 TETLSGEIKGPQLEDFPALIKQASLDALFKCGKDAEALKEVFTN-------SNNVAGKKAIMEFAGLFRSALNATSDSPE 96 (670)
T ss_pred cccccccccccchhHhHHHHHHHHHHHHHhcCccHHHHHHHHhc-------CccHHHHHHHHHHHHHHHHHHhcCCCChh
Confidence 34556666665677788888777554 66766667888877531 111 1223556777666666543
Q ss_pred -ChhHHHHHHHHHHHhhh
Q psy11494 82 -DIGVMRYAAKTVGKLAQ 98 (197)
Q Consensus 82 -D~~vm~~AA~~lG~L~~ 98 (197)
...+|+.+++--.++.+
T Consensus 97 a~k~L~ki~~qYta~IiK 114 (670)
T PRK15376 97 AKTLLMKVGAEYTAQIIK 114 (670)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 23455555554444443
No 211
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=21.26 E-value=4.1e+02 Score=20.84 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHhhhc---CCCcchhhHHHHHHHHHHHhhCCchhHhhh--hHHHHHHHhhhcC-CcHHHHHHHHHHHHH
Q psy11494 113 KKAIEWLG---GDRVEGKRHAAVLVLKELAVTVPTIFYQHV--QAFFDFVFSAVRD-PKPEIRLHAVKAIRA 178 (197)
Q Consensus 113 ~~AlewL~---~~r~e~rR~AAvLvLrELa~naPt~~~~~v--~~~~d~Iw~aLrD-pk~~iRe~Aa~aL~~ 178 (197)
+.|+.-|. ..++.+-=+-|+-+|-.+.+|.+..|+..| ..|.+.+=..+.+ ....|++...+.+..
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~ 107 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQ 107 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHH
No 212
>KOG1061|consensus
Probab=21.06 E-value=2.2e+02 Score=28.71 Aligned_cols=104 Identities=16% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHH
Q psy11494 52 IVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAA 131 (197)
Q Consensus 52 Id~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AA 131 (197)
+++|+..-.++ .+.+.-.-|+.--+-.|++.++.|-+++|+++.. ..+- +..|...+|.++. +.+.----+
T Consensus 336 leil~~la~~~---nl~qvl~El~eYatevD~~fvrkaIraig~~aik----~e~~-~~cv~~lLell~~-~~~yvvqE~ 406 (734)
T KOG1061|consen 336 LEILIELANDA---NLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIK----AEQS-NDCVSILLELLET-KVDYVVQEA 406 (734)
T ss_pred HHHHHHHhhHh---HHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhh----hhhh-hhhHHHHHHHHhh-cccceeeeh
Q ss_pred HHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCc
Q psy11494 132 VLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPK 165 (197)
Q Consensus 132 vLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk 165 (197)
+.++|-+-+.-|--+ .-+...+..-|..+-+|.
T Consensus 407 ~vvi~dilRkyP~~~-~~vv~~l~~~~~sl~epe 439 (734)
T KOG1061|consen 407 IVVIRDILRKYPNKY-ESVVAILCENLDSLQEPE 439 (734)
T ss_pred hHHHHhhhhcCCCch-hhhhhhhcccccccCChH
No 213
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=20.93 E-value=3e+02 Score=19.99 Aligned_cols=49 Identities=14% Similarity=0.260 Sum_probs=38.2
Q ss_pred cchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 124 VEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 124 ~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
.|...+.|-.+|-=++..-...||++ +|+|....|++..+++-...+.+
T Consensus 28 ~evg~~~Ae~fleFis~elGpyfYNQ----------Gi~da~a~i~ekl~d~te~l~~L 76 (82)
T COG5460 28 TEVGKFDAEFFLEFISGELGPYFYNQ----------GIKDARAVIEEKLADMTEELFAL 76 (82)
T ss_pred HHHHHhhHHHHHHHHHhhhhHHHHhh----------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888876 78999999998887766555443
No 214
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=20.55 E-value=4.6e+02 Score=21.16 Aligned_cols=86 Identities=14% Similarity=0.181 Sum_probs=65.0
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhh-ccCcchhhhH
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQ-ISGTFSAEYA 108 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~-~gG~~~~~~V 108 (197)
-.+|.++.-+++..-++-++..|...+.-+..... .+..+|-.+..++|..+-..|-+.+-.+.. ++|-+.+.+.
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~ 85 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYS 85 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34567788888888899999888888877655533 577788888888999999999999988864 4555556666
Q ss_pred HHHHHHHHhhhc
Q psy11494 109 DFEMKKAIEWLG 120 (197)
Q Consensus 109 e~ev~~AlewL~ 120 (197)
+. |+.|+++-+
T Consensus 86 ~g-i~~af~~~~ 96 (187)
T PF12830_consen 86 EG-IRLAFDYQR 96 (187)
T ss_pred HH-HHHHHHHHH
Confidence 64 777776654
No 215
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=20.53 E-value=4.8e+02 Score=21.34 Aligned_cols=99 Identities=13% Similarity=0.157 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhh-
Q psy11494 83 IGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAV- 161 (197)
Q Consensus 83 ~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aL- 161 (197)
.++-+.|=+++=-+.-.... .-|+.++ +.+....|.. ...=|.-+.++|.-|+..+|..+.+++.++.+..=.-|
T Consensus 41 LelRK~ayE~lytlLd~~~~-~~~~~~~-~~~v~~GL~D--~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLS-RIDISEF-LDRVEAGLKD--EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCS-SS-HHHH-HHHHHHTTSS---HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCHHHH-HHHHHhhcCC--cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 44445555555555443211 1234444 5555555633 66678889999999999999999999998888877666
Q ss_pred ---cCC-cHHHHHHHHHHHHHHHHHHhh
Q psy11494 162 ---RDP-KPEIRLHAVKAIRAALVVTAQ 185 (197)
Q Consensus 162 ---rDp-k~~iRe~Aa~aL~~cL~ii~~ 185 (197)
++. ..+==|...++.+.||+++..
T Consensus 117 ~k~k~~AvkQE~Ek~~E~~rs~lr~~~~ 144 (169)
T PF08623_consen 117 KKLKENAVKQEIEKQQELIRSVLRAVKA 144 (169)
T ss_dssp ----TTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcccccHHHHHHHHHHHHHHHHH
Confidence 332 233346777888888777654
No 216
>PF14203 DUF4319: Domain of unknown function (DUF4319); PDB: 2L7K_A.
Probab=20.47 E-value=2e+02 Score=19.91 Aligned_cols=33 Identities=24% Similarity=0.207 Sum_probs=25.2
Q ss_pred hHHHHHHHhhhCCCC-ChhHHHHHHHHHHHhhhc
Q psy11494 67 NIRFANYLRNLLPSN-DIGVMRYAAKTVGKLAQI 99 (197)
Q Consensus 67 ~~rf~~yL~~~l~~~-D~~vm~~AA~~lG~L~~~ 99 (197)
-.+....++..+|.- |.+....|..|++||-..
T Consensus 18 R~~~i~~l~~~lp~m~d~em~eLa~~tl~KL~~m 51 (64)
T PF14203_consen 18 REGTIENLTAALPYMDDSEMRELAESTLRKLDAM 51 (64)
T ss_dssp HHHHHHHHHHSTTTS--HHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhc
Confidence 345667778888876 999999999999999753
No 217
>KOG2274|consensus
Probab=20.20 E-value=1e+03 Score=25.01 Aligned_cols=111 Identities=12% Similarity=0.095 Sum_probs=82.2
Q ss_pred hhhhHHHHHHHhhhCCCCC-hhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhC
Q psy11494 64 NSRNIRFANYLRNLLPSND-IGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTV 142 (197)
Q Consensus 64 ~~~~~rf~~yL~~~l~~~D-~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~na 142 (197)
-.+..-..+.+++.+-.++ +.+.-.|-+++++.+.. -.....+.+.-+..++--++.+..+.-|.+|+-.+.-.+ .
T Consensus 444 dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~-~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~ 520 (1005)
T KOG2274|consen 444 DDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSS-TVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--K 520 (1005)
T ss_pred HHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--C
Confidence 3344445556667776554 45555788888876552 136678888888888889998888888888887766666 8
Q ss_pred CchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 143 PTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 143 Pt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
|.++.+..|.|+|.|--...+.+..+=..-.+||+
T Consensus 521 ~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls 555 (1005)
T KOG2274|consen 521 VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALS 555 (1005)
T ss_pred ceeccccchHHHHHHHHHcccccHHHHHHHHHHHH
Confidence 88999999999999999988888766555555554
No 218
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=20.14 E-value=4.4e+02 Score=20.71 Aligned_cols=47 Identities=26% Similarity=0.421 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCC
Q psy11494 26 TDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLP 79 (197)
Q Consensus 26 ~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~ 79 (197)
.+++.+.+.+|+.++|+.=++ +|++||....... +..+...|.+++.
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQk---lAL~cll~~k~~~----l~pY~d~L~~Lld 61 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQK---LALDCLLTWKDPY----LTPYKDNLENLLD 61 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHH---HHHHHHHHhCcHH----HHhHHHHHHHHcC
Confidence 456788888999999976665 4566666654222 4556666666654
No 219
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=20.04 E-value=3.3e+02 Score=24.55 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=34.4
Q ss_pred HHHHHHHhhhcCCCcchhhHHHHHHHHHHHhh--CCchhH-hhhhHHHHHHHhhhcCCcHHH
Q psy11494 110 FEMKKAIEWLGGDRVEGKRHAAVLVLKELAVT--VPTIFY-QHVQAFFDFVFSAVRDPKPEI 168 (197)
Q Consensus 110 ~ev~~AlewL~~~r~e~rR~AAvLvLrELa~n--aPt~~~-~~v~~~~d~Iw~aLrDpk~~i 168 (197)
-||+-.++-|+...+-..|.+|++ |||.. .|.+.. -.-+.+.+.+|.++.|.....
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll---~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~ 79 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLL---ELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDD 79 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHH---HHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchH
Confidence 467778888885445555555544 45544 333222 224677888999997776654
Done!