Query psy11494
Match_columns 197
No_of_seqs 107 out of 175
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 19:51:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk2_A LP04448P; mini spindles 99.1 3.2E-09 1.1E-13 87.1 15.6 145 31-182 18-163 (242)
2 2qk1_A Protein STU2; STU2P, XM 98.6 1.8E-06 6.2E-11 72.3 15.4 149 33-182 21-176 (249)
3 2qk2_A LP04448P; mini spindles 98.3 3.6E-05 1.2E-09 62.7 16.8 153 27-186 55-210 (242)
4 2bpt_A Importin beta-1 subunit 98.3 2.3E-05 7.9E-10 73.3 17.4 155 27-183 368-531 (861)
5 1u6g_C TIP120 protein, CAND1; 98.3 1.6E-05 5.4E-10 78.7 15.2 158 22-182 127-285 (1230)
6 1u6g_C TIP120 protein, CAND1; 98.2 5.9E-05 2E-09 74.6 18.5 152 27-181 47-204 (1230)
7 4db6_A Armadillo repeat protei 98.2 2.5E-05 8.6E-10 61.3 12.0 155 25-181 9-167 (210)
8 2qk1_A Protein STU2; STU2P, XM 98.2 0.00012 3.9E-09 61.2 16.6 152 28-187 60-226 (249)
9 4fdd_A Transportin-1; heat rep 98.1 3.1E-05 1.1E-09 73.8 13.7 155 25-180 125-284 (852)
10 4hxt_A De novo protein OR329; 98.1 0.0001 3.4E-09 58.6 14.0 147 31-179 5-155 (252)
11 2bpt_A Importin beta-1 subunit 98.1 0.00013 4.6E-09 68.2 17.0 164 21-184 590-766 (861)
12 4db8_A Armadillo-repeat protei 98.1 6E-05 2E-09 60.6 12.7 149 30-180 14-166 (252)
13 1ibr_B P95, importin beta-1 su 98.1 0.00014 4.6E-09 62.9 15.7 149 30-183 37-205 (462)
14 4fdd_A Transportin-1; heat rep 98.0 0.00013 4.5E-09 69.4 16.3 154 27-181 358-512 (852)
15 1ibr_B P95, importin beta-1 su 98.0 0.00014 4.7E-09 62.9 15.0 159 25-183 125-290 (462)
16 1qgr_A Protein (importin beta 98.0 0.00026 9E-09 66.3 17.6 165 20-184 598-777 (876)
17 4db6_A Armadillo repeat protei 98.0 0.0002 6.8E-09 56.1 13.6 148 29-178 55-206 (210)
18 4db8_A Armadillo-repeat protei 97.9 0.00017 5.7E-09 58.0 12.4 149 29-178 97-248 (252)
19 4hxt_A De novo protein OR329; 97.9 0.00022 7.5E-09 56.6 12.7 151 29-181 87-241 (252)
20 1b3u_A Protein (protein phosph 97.9 0.00031 1.1E-08 62.5 14.7 149 27-182 401-549 (588)
21 2jdq_A Importin alpha-1 subuni 97.9 0.0004 1.4E-08 60.0 14.7 152 28-180 64-220 (450)
22 1qgr_A Protein (importin beta 97.8 0.00046 1.6E-08 64.6 15.3 155 26-182 364-538 (876)
23 2vgl_B AP-2 complex subunit be 97.8 0.00033 1.1E-08 64.7 13.7 137 30-179 51-187 (591)
24 1b3u_A Protein (protein phosph 97.8 0.00086 3E-08 59.7 15.7 150 27-183 163-312 (588)
25 4b8j_A Importin subunit alpha- 97.8 0.00061 2.1E-08 61.0 14.5 150 30-180 119-272 (528)
26 2jdq_A Importin alpha-1 subuni 97.6 0.0012 4E-08 57.0 13.8 150 30-180 151-304 (450)
27 1wa5_B Importin alpha subunit; 97.6 0.0011 3.8E-08 59.6 13.8 150 30-180 217-369 (530)
28 3b2a_A TON_1937, putative unch 97.5 0.0069 2.3E-07 51.6 15.9 161 10-180 57-217 (265)
29 1oyz_A Hypothetical protein YI 97.5 0.0046 1.6E-07 50.6 14.7 128 30-177 25-153 (280)
30 1wa5_B Importin alpha subunit; 97.4 0.00068 2.3E-08 60.9 10.0 150 29-180 131-285 (530)
31 4b8j_A Importin subunit alpha- 97.4 0.0023 7.8E-08 57.2 13.0 149 31-180 205-357 (528)
32 1w63_A Adapter-related protein 97.3 0.0025 8.6E-08 59.3 12.6 134 31-179 73-206 (618)
33 3ltj_A Alpharep-4; protein eng 97.3 0.0079 2.7E-07 46.7 13.6 84 74-178 81-164 (201)
34 1xqr_A HSPBP1 protein; armadil 97.3 0.0042 1.4E-07 53.3 12.8 150 30-181 30-196 (296)
35 3ltm_A Alpha-REP4; protein eng 97.3 0.0047 1.6E-07 48.4 12.1 47 122-178 154-200 (211)
36 3ltm_A Alpha-REP4; protein eng 97.1 0.014 4.8E-07 45.6 13.7 46 123-178 124-169 (211)
37 3ltj_A Alpharep-4; protein eng 97.1 0.0098 3.4E-07 46.2 12.2 116 32-178 80-195 (201)
38 1xqr_A HSPBP1 protein; armadil 97.0 0.011 3.9E-07 50.5 13.2 150 31-182 84-239 (296)
39 2vgl_A Adaptor protein complex 97.0 0.0062 2.1E-07 57.0 11.8 138 31-179 77-214 (621)
40 3tpo_A Importin subunit alpha- 96.9 0.016 5.5E-07 52.4 13.4 154 29-184 294-452 (529)
41 1oyz_A Hypothetical protein YI 96.9 0.022 7.5E-07 46.5 13.0 65 29-98 55-120 (280)
42 3tpo_A Importin subunit alpha- 96.9 0.0097 3.3E-07 53.9 11.8 151 28-180 251-405 (529)
43 2x19_B Importin-13; nuclear tr 96.8 0.049 1.7E-06 52.2 17.1 139 38-181 459-599 (963)
44 1w63_A Adapter-related protein 96.7 0.026 8.9E-07 52.4 14.0 70 26-99 140-209 (618)
45 3ul1_B Importin subunit alpha- 96.7 0.017 5.7E-07 52.2 12.0 155 29-185 275-434 (510)
46 3ul1_B Importin subunit alpha- 96.7 0.0078 2.7E-07 54.4 9.7 150 29-180 233-386 (510)
47 2vgl_B AP-2 complex subunit be 96.6 0.067 2.3E-06 49.2 15.8 146 27-179 120-266 (591)
48 2x1g_F Cadmus; transport prote 96.6 0.042 1.4E-06 52.9 14.9 136 40-181 476-615 (971)
49 1wa5_C Importin alpha RE-expor 96.6 0.052 1.8E-06 52.6 15.7 141 39-183 416-584 (960)
50 1jdh_A Beta-catenin; beta-cate 96.5 0.044 1.5E-06 48.2 13.3 148 30-178 103-253 (529)
51 1jdh_A Beta-catenin; beta-cate 96.4 0.04 1.4E-06 48.4 12.5 112 69-180 266-384 (529)
52 1xm9_A Plakophilin 1; armadill 96.3 0.085 2.9E-06 47.0 13.9 109 32-141 6-117 (457)
53 2db0_A 253AA long hypothetical 96.3 0.045 1.5E-06 45.4 10.9 105 66-179 104-208 (253)
54 2z6h_A Catenin beta-1, beta-ca 96.2 0.09 3.1E-06 48.5 13.9 149 30-179 100-251 (644)
55 2of3_A ZYG-9; multifunctional 96.1 0.077 2.6E-06 45.2 12.0 154 29-183 47-238 (266)
56 2iw3_A Elongation factor 3A; a 96.1 0.062 2.1E-06 53.5 12.8 139 46-188 70-211 (986)
57 2z6h_A Catenin beta-1, beta-ca 96.0 0.081 2.8E-06 48.8 12.3 112 69-180 263-381 (644)
58 1te4_A Conserved protein MTH18 95.9 0.0043 1.5E-07 45.8 2.9 122 24-177 8-129 (131)
59 3b2a_A TON_1937, putative unch 95.9 0.42 1.4E-05 40.6 15.4 151 26-187 31-182 (265)
60 3now_A UNC-45 protein, SD10334 95.9 0.19 6.4E-06 49.0 15.0 154 23-179 242-406 (810)
61 4gmo_A Putative uncharacterize 95.6 0.076 2.6E-06 50.1 10.6 144 33-178 39-211 (684)
62 3nmw_A APC variant protein; AR 95.5 0.34 1.2E-05 42.2 13.8 150 30-179 129-290 (354)
63 4ffb_C Protein STU2; tubulin f 95.4 0.15 5E-06 42.2 10.9 146 33-184 60-215 (278)
64 2z6g_A B-catenin; FULL-length, 95.3 0.39 1.3E-05 45.8 14.7 144 30-177 152-301 (780)
65 2vgl_A Adaptor protein complex 95.2 0.54 1.8E-05 43.8 15.2 153 18-178 218-395 (621)
66 3tjz_B Coatomer subunit gamma; 95.1 0.78 2.7E-05 40.4 15.0 136 28-179 68-203 (355)
67 4ffb_C Protein STU2; tubulin f 94.8 1.3 4.3E-05 36.4 14.9 144 33-182 14-169 (278)
68 3oc3_A Helicase MOT1, MOT1; re 94.8 0.084 2.9E-06 50.3 8.3 135 29-178 175-325 (800)
69 2z6g_A B-catenin; FULL-length, 94.7 0.52 1.8E-05 44.9 13.9 111 30-141 236-349 (780)
70 1vsy_5 Proteasome activator BL 94.7 0.05 1.7E-06 54.1 6.9 110 68-178 842-963 (997)
71 3now_A UNC-45 protein, SD10334 94.6 0.64 2.2E-05 45.3 14.1 148 31-180 293-449 (810)
72 3nmz_A APC variant protein; pr 94.4 1.1 3.6E-05 40.6 14.4 150 31-180 246-407 (458)
73 3m1i_C Exportin-1; heat repeat 94.1 1.8 6.2E-05 42.3 16.3 148 28-177 451-614 (1049)
74 1wa5_C Importin alpha RE-expor 93.9 0.54 1.9E-05 45.4 12.0 131 45-181 378-525 (960)
75 2db0_A 253AA long hypothetical 93.6 0.54 1.8E-05 39.0 9.7 92 24-119 140-244 (253)
76 1te4_A Conserved protein MTH18 93.5 0.014 4.8E-07 42.9 0.2 90 68-179 11-100 (131)
77 3opb_A SWI5-dependent HO expre 93.3 0.39 1.3E-05 46.7 9.7 138 44-182 575-729 (778)
78 4ady_A RPN2, 26S proteasome re 92.7 1.1 3.7E-05 44.5 12.2 126 36-180 550-675 (963)
79 3l6x_A Catenin delta-1; cateni 92.6 5.9 0.0002 37.0 16.5 148 32-181 312-476 (584)
80 1vsy_5 Proteasome activator BL 92.0 0.32 1.1E-05 48.3 7.6 113 68-183 751-875 (997)
81 3nmz_A APC variant protein; pr 91.4 1.9 6.4E-05 39.0 11.4 107 73-180 334-449 (458)
82 3l6x_A Catenin delta-1; cateni 91.4 3.7 0.00013 38.4 13.7 148 31-179 51-219 (584)
83 3nmw_A APC variant protein; AR 91.2 1.7 5.7E-05 37.8 10.5 109 73-182 218-335 (354)
84 3tt9_A Plakophilin-2; cell adh 91.0 1.2 4.2E-05 36.7 9.1 110 31-141 11-125 (233)
85 3grl_A General vesicular trans 90.0 11 0.00036 36.0 15.4 149 24-178 21-192 (651)
86 2x19_B Importin-13; nuclear tr 89.5 15 0.0005 34.9 18.1 162 21-182 676-847 (963)
87 1xm9_A Plakophilin 1; armadill 89.2 1.2 4.2E-05 39.3 8.1 101 78-179 11-114 (457)
88 1lsh_A Lipovitellin (LV-1N, LV 89.1 1.2 4E-05 44.3 8.6 134 31-179 394-541 (1056)
89 4hat_C Exportin-1; heat repeat 88.3 5.5 0.00019 39.5 12.8 141 40-182 465-619 (1023)
90 3tjz_B Coatomer subunit gamma; 88.3 2.6 8.7E-05 37.1 9.4 136 29-177 140-275 (355)
91 3gs3_A Symplekin, LD45768P; he 86.3 14 0.00046 30.9 13.1 53 133-185 120-177 (257)
92 2x1g_F Cadmus; transport prote 85.4 12 0.00042 35.6 13.2 109 67-180 457-571 (971)
93 3oc3_A Helicase MOT1, MOT1; re 84.8 9.4 0.00032 36.6 11.5 137 36-185 271-413 (800)
94 3tt9_A Plakophilin-2; cell adh 84.5 4.6 0.00016 33.2 8.5 104 75-179 14-122 (233)
95 3a6p_A Exportin-5; exportin-5, 82.6 28 0.00096 34.8 14.8 86 79-165 542-638 (1204)
96 4ady_A RPN2, 26S proteasome re 82.0 37 0.0013 33.7 15.1 126 38-177 588-715 (963)
97 3l9t_A Putative uncharacterize 75.3 35 0.0012 28.4 13.2 155 6-179 35-205 (240)
98 4gmo_A Putative uncharacterize 74.6 4.8 0.00016 37.7 6.1 70 108-178 32-102 (684)
99 2b6c_A Hypothetical protein EF 74.2 32 0.0011 27.4 14.3 129 31-180 58-187 (220)
100 2iw3_A Elongation factor 3A; a 74.0 20 0.00069 35.6 10.6 55 129-183 70-126 (986)
101 3opb_A SWI5-dependent HO expre 69.3 49 0.0017 32.0 11.8 136 29-164 607-759 (778)
102 3o2t_A Symplekin; heat repeat, 68.3 64 0.0022 28.5 12.2 41 145-185 147-187 (386)
103 3m1i_C Exportin-1; heat repeat 67.4 77 0.0026 30.7 13.0 105 81-185 772-882 (1049)
104 3jxy_A Alkylpurine DNA glycosy 66.4 49 0.0017 26.5 11.5 130 32-181 65-195 (232)
105 1w9c_A CRM1 protein, exportin 55.2 1E+02 0.0035 26.6 13.9 109 77-185 85-200 (321)
106 3d9j_A RNA-binding protein 16; 53.7 31 0.0011 26.0 6.1 85 25-110 39-130 (145)
107 3qml_C Protein SLS1, nucleotid 52.8 1.1E+02 0.0039 26.4 12.9 153 24-181 19-189 (315)
108 3grl_A General vesicular trans 52.5 1.6E+02 0.0054 27.9 13.5 108 71-184 124-237 (651)
109 1vdy_A Hypothetical protein (R 52.4 34 0.0012 26.1 6.1 62 117-179 56-128 (140)
110 1t06_A Hypothetical protein; s 49.4 43 0.0015 27.1 6.6 67 112-181 110-180 (235)
111 1sz9_A PCF11 protein; RNA poly 46.4 90 0.0031 23.4 7.7 82 25-109 40-129 (144)
112 3ibv_A Exportin-T; karyopherin 44.9 2.3E+02 0.0079 27.6 12.4 118 40-162 455-588 (980)
113 1elk_A Target of MYB1; superhe 44.9 60 0.0021 24.7 6.5 60 122-181 65-130 (157)
114 4flb_A Regulation of nuclear P 44.3 87 0.003 22.6 7.6 81 29-110 41-123 (132)
115 4atg_A TAF6; transcription, TF 43.8 1.2E+02 0.0042 24.1 12.4 109 48-157 66-180 (196)
116 4hat_C Exportin-1; heat repeat 43.5 2.5E+02 0.0085 27.6 13.1 105 80-184 771-881 (1023)
117 1dvp_A HRS, hepatocyte growth 42.5 1.3E+02 0.0043 23.9 8.8 70 29-102 6-75 (220)
118 2of3_A ZYG-9; multifunctional 41.2 77 0.0026 26.4 7.1 65 124-188 59-123 (266)
119 3clj_A Protein NRD1; CTD-inter 41.0 42 0.0014 26.1 5.1 35 24-58 37-71 (157)
120 3dad_A FH1/FH2 domain-containi 40.5 1.8E+02 0.0063 25.2 11.5 108 31-144 163-290 (339)
121 3gjx_A Exportin-1; transport, 37.0 3.3E+02 0.011 27.1 13.3 105 80-184 797-907 (1073)
122 1vsy_4 Proteasome activator BL 36.9 1.5E+02 0.0052 28.5 9.3 59 102-160 550-612 (799)
123 3u0r_A Apoptosis inhibitor 5; 35.6 2.6E+02 0.0089 25.7 10.1 116 30-180 31-162 (507)
124 1upk_A MO25 protein; transfera 35.1 2.3E+02 0.0077 24.7 11.5 97 80-177 175-279 (341)
125 1lsh_A Lipovitellin (LV-1N, LV 33.7 3.4E+02 0.011 26.7 11.4 89 85-177 415-503 (1056)
126 1naf_A ADP-ribosylation factor 29.2 1.6E+02 0.0054 22.8 6.6 65 30-104 19-86 (158)
127 3zyq_A Hepatocyte growth facto 27.9 2.3E+02 0.0079 22.6 10.6 68 31-102 11-78 (226)
128 4fu3_A Regulation of nuclear P 27.8 43 0.0015 24.3 3.0 32 26-57 37-68 (135)
129 3o2t_A Symplekin; heat repeat, 27.7 1.5E+02 0.0051 26.1 7.0 50 127-180 41-91 (386)
130 1juq_A ADP-ribosylation factor 27.5 2.1E+02 0.0072 21.9 8.8 87 92-178 2-125 (171)
131 1x5b_A Signal transducing adap 27.3 2E+02 0.007 21.8 7.9 56 123-178 64-122 (163)
132 2l7k_A Uncharacterized protein 26.9 81 0.0028 21.7 4.0 43 67-112 20-62 (76)
133 1y8m_A FIS1; mitochondria, unk 25.7 2E+02 0.0069 21.9 6.5 43 17-59 17-72 (144)
134 1zl8_A LIN-7; heterodimer, alp 25.4 1.1E+02 0.0039 19.4 4.2 44 108-157 5-52 (53)
135 2llh_A Nucleophosmin; nucleola 30.0 16 0.00055 25.1 0.0 21 67-87 45-65 (74)
136 1mhq_A ADP-ribosylation factor 24.0 1.7E+02 0.0059 21.9 5.9 76 32-111 5-81 (148)
137 4flb_A Regulation of nuclear P 24.0 2E+02 0.0069 20.5 9.9 102 69-187 9-114 (132)
138 4atg_A TAF6; transcription, TF 24.0 2.7E+02 0.0093 22.1 14.3 116 63-178 38-159 (196)
139 3o48_A Mitochondria fission 1 22.9 2.2E+02 0.0075 21.4 6.2 43 17-59 18-73 (134)
140 1ho8_A Vacuolar ATP synthase s 22.5 4.4E+02 0.015 23.9 9.7 76 64-180 394-475 (480)
141 1x5b_A Signal transducing adap 21.5 1.9E+02 0.0065 22.0 5.8 68 31-102 18-85 (163)
142 1jw2_A Hemolysin expression mo 20.5 2.1E+02 0.0071 19.4 5.1 36 3-38 21-56 (72)
143 3gjx_A Exportin-1; transport, 20.4 6.4E+02 0.022 25.0 15.2 133 30-164 479-627 (1073)
No 1
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.10 E-value=3.2e-09 Score=87.10 Aligned_cols=145 Identities=12% Similarity=0.144 Sum_probs=122.4
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCC-CCChhHHHHHHHHHHHhhhccCcchhhhHH
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLP-SNDIGVMRYAAKTVGKLAQISGTFSAEYAD 109 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~-~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve 109 (197)
..+++.++|++-.+|++|+.+|..+++....-....+.++.++|...+. .++..|+..|..++|.|+...|.....|++
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3478889999999999999999999976211122346789999999996 899999999999999999987776677888
Q ss_pred HHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 110 FEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 110 ~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
.-+..-++-+.. .+..=|-+|.-.|..++.+.| +..+++.+..++.|++..+|+.+...|..|+.-
T Consensus 98 ~ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 98 ACVPSLLEKFKE-KKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTR 163 (242)
T ss_dssp HHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 888888888865 556678899999999998765 578899999999999999999999999988754
No 2
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.58 E-value=1.8e-06 Score=72.28 Aligned_cols=149 Identities=9% Similarity=0.146 Sum_probs=116.6
Q ss_pred HHHHhhCCchhHHHHHHHHHHH-Hhh-cC-CCcchhhhHHHHHHHhhhC-CCCChhHHHHHHHHHHHhhhccC-cchh-h
Q psy11494 33 IFEMVSANDVNEKKSGIIAIVC-LLH-VD-VGNVNSRNIRFANYLRNLL-PSNDIGVMRYAAKTVGKLAQISG-TFSA-E 106 (197)
Q Consensus 33 I~~L~~s~d~~eklggI~aId~-Li~-~~-~~~~~~~~~rf~~yL~~~l-~~~D~~vm~~AA~~lG~L~~~gG-~~~~-~ 106 (197)
..+.+.|++-.||+.++.+|.. +++ .. .......+..+..-|.+.+ ...+..|...|..++|.|+..-+ .-.. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4667799999999999999999 873 21 1110222456777788888 57889999999999999998644 4445 8
Q ss_pred hHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhC-CchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 107 YADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTV-PTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 107 ~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~na-Pt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
|...-+...++-+...+...+. +|.--|..++.+. |...+++++.+++.|..+|.+++..+|+.+..+|..|+.-
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~-aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIE-AIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHH-HHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 8888899999999765555554 4555588899885 5555566999999999999999999999999999999864
No 3
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.34 E-value=3.6e-05 Score=62.72 Aligned_cols=153 Identities=9% Similarity=0.126 Sum_probs=113.1
Q ss_pred HHHHHHHHHHh-hCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchh
Q psy11494 27 DAFNHHIFEMV-SANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSA 105 (197)
Q Consensus 27 ~~l~~~I~~L~-~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~ 105 (197)
.++...+..++ +.++.+=+.+|+.++..|...-+.+-......+...|-..+..++..|-..|..++..++...+
T Consensus 55 ~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---- 130 (242)
T 2qk2_A 55 GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---- 130 (242)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----
Confidence 34555666677 4788777889999999998432223233344455555555556778899999999999987542
Q ss_pred hhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhC-Cc-hhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q psy11494 106 EYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTV-PT-IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 106 ~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~na-Pt-~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii 183 (197)
++.-+..-++.|+. ++..-|..++-.|..++.+. |. .+-++++.+++.+...+.|++..||.+|.+++......+
T Consensus 131 --~~~ll~~l~~~l~~-~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 131 --LEAQQESIVESLSN-KNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp --HHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 23344455666664 46677888888888876665 66 677899999999999999999999999999999988888
Q ss_pred hhc
Q psy11494 184 AQR 186 (197)
Q Consensus 184 ~~R 186 (197)
-.+
T Consensus 208 g~~ 210 (242)
T 2qk2_A 208 GDK 210 (242)
T ss_dssp CHH
T ss_pred CHH
Confidence 654
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.33 E-value=2.3e-05 Score=73.35 Aligned_cols=155 Identities=12% Similarity=0.128 Sum_probs=115.9
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCC-CcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcc--
Q psy11494 27 DAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDV-GNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTF-- 103 (197)
Q Consensus 27 ~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~-~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~-- 103 (197)
..+.+.+.+++++++...|.+++.++..+.+.-. ......+..+...|...+...+..|-..|++++|+++...|.-
T Consensus 368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 3445556667778888899999999999985421 1122334445556666666678889999999999999864431
Q ss_pred hhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhC----CchhHhhhhHHHHHHHhhhc--CCcHHHHHHHHHHHH
Q psy11494 104 SAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTV----PTIFYQHVQAFFDFVFSAVR--DPKPEIRLHAVKAIR 177 (197)
Q Consensus 104 ~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~na----Pt~~~~~v~~~~d~Iw~aLr--Dpk~~iRe~Aa~aL~ 177 (197)
..++++.-+...++.|+.+ ..-|.+|+..|..++... |..+-+|++.+++.+...+. |++..+|..+.+++.
T Consensus 448 ~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALT 525 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence 3567777777777778654 556778888999999885 47788999999999999998 555899999999998
Q ss_pred HHHHHH
Q psy11494 178 AALVVT 183 (197)
Q Consensus 178 ~cL~ii 183 (197)
.+....
T Consensus 526 ~l~~~~ 531 (861)
T 2bpt_A 526 TMVEYA 531 (861)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 876543
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.26 E-value=1.6e-05 Score=78.70 Aligned_cols=158 Identities=10% Similarity=0.084 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHhh-CCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhcc
Q psy11494 22 VTAFTDAFNHHIFEMVS-ANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQIS 100 (197)
Q Consensus 22 ~~~~~~~l~~~I~~L~~-s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~g 100 (197)
...++.++-..+++.++ +++..-+.+++.++..+.+..+.........+...|...+...+..|-..|..++|.++...
T Consensus 127 ~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 127 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC 206 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc
Confidence 45688899999999998 57777788999999888854333333345677777777887788899999999999999764
Q ss_pred CcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 101 GTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 101 G~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
|. ++++.-+..-++.|..+....-|-+|+-.|-+++...|..|-+|++.+++.+...+.|++..+|+.|..++....
T Consensus 207 ~~---~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~ 283 (1230)
T 1u6g_C 207 GN---IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFV 283 (1230)
T ss_dssp -------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHH
T ss_pred CH---HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 32 233333445555555433345566789999999999999999999999999999999999999999999988766
Q ss_pred HH
Q psy11494 181 VV 182 (197)
Q Consensus 181 ~i 182 (197)
..
T Consensus 284 ~~ 285 (1230)
T 1u6g_C 284 RR 285 (1230)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.22 E-value=5.9e-05 Score=74.63 Aligned_cols=152 Identities=6% Similarity=0.050 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcc---
Q psy11494 27 DAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTF--- 103 (197)
Q Consensus 27 ~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~--- 103 (197)
+.+-..+++.+.+++..-|..++.+|..+.+.-. ...+..+-..|...+...+..+-..|+.++|.++...|..
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~---~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK---EYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 3455567777888888889999999999985421 1345556666666777778888889999999999764432
Q ss_pred ---hhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 104 ---SAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 104 ---~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
...+...-+..-++.+........|..|+.+|.+++...|..+-+|++.+++.+...+.||+..||+.|+.|+..+.
T Consensus 124 ~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~ 203 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV 203 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 34456666666677776445667899999999999999999899999999999999999999999999999988765
Q ss_pred H
Q psy11494 181 V 181 (197)
Q Consensus 181 ~ 181 (197)
.
T Consensus 204 ~ 204 (1230)
T 1u6g_C 204 M 204 (1230)
T ss_dssp T
T ss_pred H
Confidence 4
No 7
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.18 E-value=2.5e-05 Score=61.31 Aligned_cols=155 Identities=13% Similarity=0.080 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhH--HHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCc
Q psy11494 25 FTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNI--RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGT 102 (197)
Q Consensus 25 ~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~--rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~ 102 (197)
+.+.....+..|++++|..-+..++.+|..|.... .+....+. .....|-.+|.+.|..+...|++++|.++.....
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 44456778999999999999999999998887432 11111111 2445677778888999999999999999864323
Q ss_pred chhhhHHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 103 FSAEYADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 103 ~~~~~Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
....+++.. +..-++.|+.+ ...-|..|+..|..|+...|......+ ...++.+-..+.+++..+|+.|+.+|..+.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 333344433 44555556554 466678889999999987766433322 457888888999999999999999998765
Q ss_pred H
Q psy11494 181 V 181 (197)
Q Consensus 181 ~ 181 (197)
.
T Consensus 167 ~ 167 (210)
T 4db6_A 167 S 167 (210)
T ss_dssp T
T ss_pred c
Confidence 3
No 8
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.17 E-value=0.00012 Score=61.21 Aligned_cols=152 Identities=9% Similarity=0.117 Sum_probs=110.9
Q ss_pred HHHHHHHHHh-hCCchhHHHHHHHHHHHHhhcCC-CcchhhhHHHH-HHHhhhCC-------CCChhHHHHHHHHHHHhh
Q psy11494 28 AFNHHIFEMV-SANDVNEKKSGIIAIVCLLHVDV-GNVNSRNIRFA-NYLRNLLP-------SNDIGVMRYAAKTVGKLA 97 (197)
Q Consensus 28 ~l~~~I~~L~-~s~d~~eklggI~aId~Li~~~~-~~~~~~~~rf~-~yL~~~l~-------~~D~~vm~~AA~~lG~L~ 97 (197)
++.+.+-..+ +.+++.-+.+++.||..|...-. . .|. .|...++| .+...|...|..++=.++
T Consensus 60 ~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~-------~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~ 132 (249)
T 2qk1_A 60 NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTP-------GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTIC 132 (249)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTT-------TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc-------cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3444455566 67777778899999988873221 1 233 44443333 344677787777877777
Q ss_pred hccCcch-hhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCC---chhHhhh-hHHHHHHHhhhcCCcHHHHHHH
Q psy11494 98 QISGTFS-AEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVP---TIFYQHV-QAFFDFVFSAVRDPKPEIRLHA 172 (197)
Q Consensus 98 ~~gG~~~-~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naP---t~~~~~v-~~~~d~Iw~aLrDpk~~iRe~A 172 (197)
..-+... .-+.+.-+..-++.|+.. +..-|.+++..|..++.++| ..|-+++ +.+++.+-..+.|++..||++|
T Consensus 133 ~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA 211 (249)
T 2qk1_A 133 KYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIG 211 (249)
T ss_dssp HHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHH
T ss_pred HHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 6532111 112556677778888764 66889999999999999988 5688999 9999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q psy11494 173 VKAIRAALVVTAQRE 187 (197)
Q Consensus 173 a~aL~~cL~ii~~Re 187 (197)
.+++..+..++-.|+
T Consensus 212 ~~~l~~i~~~vG~~~ 226 (249)
T 2qk1_A 212 FESFAILIKIFGMNT 226 (249)
T ss_dssp HHHHHHHHHHHCSGG
T ss_pred HHHHHHHHHHhCHHH
Confidence 999999998887764
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.12 E-value=3.1e-05 Score=73.79 Aligned_cols=155 Identities=10% Similarity=0.048 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCc-----chhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhc
Q psy11494 25 FTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGN-----VNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQI 99 (197)
Q Consensus 25 ~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~-----~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~ 99 (197)
.|.++-..+.+++++++.+-+.+|+.++..+.+.-... ....+..+...|..++...+..|-..|.++++.++..
T Consensus 125 ~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 45567778889999999899999999999887542111 0111344455556667778999999999999988865
Q ss_pred cCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 100 SGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 100 gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
.+....+.++.-++.-+..++ +..+.-|.+|+-.|-+|+...|..+-+|++.+++.+|..+.|+...||..|.+++..+
T Consensus 205 ~~~~~~~~~~~~l~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 205 RTQALMLHIDSFIENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTL 283 (852)
T ss_dssp TCHHHHTSHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 332222333333444444444 4556677888999999999999999999999999999999999999999999887765
Q ss_pred H
Q psy11494 180 L 180 (197)
Q Consensus 180 L 180 (197)
.
T Consensus 284 ~ 284 (852)
T 4fdd_A 284 A 284 (852)
T ss_dssp T
T ss_pred h
Confidence 3
No 10
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.09 E-value=0.0001 Score=58.63 Aligned_cols=147 Identities=14% Similarity=0.139 Sum_probs=106.2
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhH--HHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhH
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNI--RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYA 108 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~--rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~V 108 (197)
..+.+++++++...+..++.+|..|...+. +....+. .....|..++.+.|..+...|++++|.++.........++
T Consensus 5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 5 EKLVKLLTSTDSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 467888888888888899999988875542 2121121 2566777788889999999999999999876433344444
Q ss_pred HHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 109 DFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 109 e~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
+.. +..-++.|.. ..+.-|..|+..|..|+...|...-..+ ...++.+...+++++..+|..|+.+|...
T Consensus 84 ~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l 155 (252)
T 4hxt_A 84 DAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 155 (252)
T ss_dssp HTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 433 4444555554 5567788999999999976665333222 35788888999999999999999998864
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.09 E-value=0.00013 Score=68.17 Aligned_cols=164 Identities=14% Similarity=0.103 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhc
Q psy11494 21 EVTAFTDAFNHHIFEMVSANDV-NEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQI 99 (197)
Q Consensus 21 ~~~~~~~~l~~~I~~L~~s~d~-~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~ 99 (197)
.+..|.+.+...+.+++++++. .-+..++.+|..+...-+.+-...+..+...|...+...+.++...|..++|.++..
T Consensus 590 ~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 590 SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 3445677788888888877654 457778888888876544444445666777777777677889999999999999998
Q ss_pred cCcchhhhHHHHHHHHHhhhcCCC-cchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCc-----------HH
Q psy11494 100 SGTFSAEYADFEMKKAIEWLGGDR-VEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPK-----------PE 167 (197)
Q Consensus 100 gG~~~~~~Ve~ev~~AlewL~~~r-~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk-----------~~ 167 (197)
.|.....|++.-+...++-|+.+. ...-|-+++..|..++.+.|.-|.+|++.++..+...+..+. ..
T Consensus 670 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~ 749 (861)
T 2bpt_A 670 LEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIK 749 (861)
T ss_dssp TGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHH
T ss_pred hchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 776666777777777777787543 356788999999999999999999999999999999887431 57
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy11494 168 IRLHAVKAIRAALVVTA 184 (197)
Q Consensus 168 iRe~Aa~aL~~cL~ii~ 184 (197)
+|+++.+++...+.-+.
T Consensus 750 vr~~~l~~~~~i~~~l~ 766 (861)
T 2bpt_A 750 VLEAVLDAYVGIVAGLH 766 (861)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999888775543
No 12
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.08 E-value=6e-05 Score=60.64 Aligned_cols=149 Identities=13% Similarity=0.067 Sum_probs=106.7
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
+..++++++|+|...+..++.++..++..+ .+....+ ......|-.+|.+.|.++...|++++|.++.........+
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 567888999999999999999997666432 1111111 1244566777788899999999999999987433334445
Q ss_pred HHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCch-hHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 108 ADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTI-FYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 108 Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~-~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
++. -+..-++.|+. ..+.-|..|+..|..|+.+.+.. -...-...++.+-..|.|++..+|+.|+.+|....
T Consensus 93 ~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 93 IDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (252)
T ss_dssp HHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 544 34555566665 45667888999999999887765 22233457788888899999999999999988553
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.08 E-value=0.00014 Score=62.91 Aligned_cols=149 Identities=11% Similarity=0.101 Sum_probs=106.2
Q ss_pred HHHHHHHhhCC--chhHHHHHHHHHHHHhhcCCCc------------chhhhHHHHHHHhhhCCCCChhHHHHHHHHHHH
Q psy11494 30 NHHIFEMVSAN--DVNEKKSGIIAIVCLLHVDVGN------------VNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGK 95 (197)
Q Consensus 30 ~~~I~~L~~s~--d~~eklggI~aId~Li~~~~~~------------~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~ 95 (197)
...+.+++.++ +..-|.-+...+..++...-.. ........-+.|-..+...+..+ ..++.++|.
T Consensus 37 ~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ 115 (462)
T 1ibr_B 37 LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAG 115 (462)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHH
Confidence 33455555443 5677888888888887542100 11112234445555666777888 999999999
Q ss_pred hhhccCc--chhhhHHHHHHHHHhhhcCCC-cchhhHHHHHHHHHHHhhC-CchhHhhhhHHHHHHHhhhcCC--cHHHH
Q psy11494 96 LAQISGT--FSAEYADFEMKKAIEWLGGDR-VEGKRHAAVLVLKELAVTV-PTIFYQHVQAFFDFVFSAVRDP--KPEIR 169 (197)
Q Consensus 96 L~~~gG~--~~~~~Ve~ev~~AlewL~~~r-~e~rR~AAvLvLrELa~na-Pt~~~~~v~~~~d~Iw~aLrDp--k~~iR 169 (197)
++...+. .-.+++..-+ +.++.+. ....|.+|+.+|..++... |..+.++++.++..+-..+.|+ +..||
T Consensus 116 ia~~~~~~~~w~~ll~~L~----~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr 191 (462)
T 1ibr_B 116 IACAEIPVNQWPELIPQLV----ANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVK 191 (462)
T ss_dssp HHHHHGGGTCCTTHHHHHH----HHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHH
T ss_pred HHHHhccccccHHHHHHHH----HHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHH
Confidence 9987432 2345554443 3444432 6678999999999999986 8888999999999999999999 79999
Q ss_pred HHHHHHHHHHHHHH
Q psy11494 170 LHAVKAIRAALVVT 183 (197)
Q Consensus 170 e~Aa~aL~~cL~ii 183 (197)
..|+.++..++..+
T Consensus 192 ~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 192 LAATNALLNSLEFT 205 (462)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876544
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.05 E-value=0.00013 Score=69.42 Aligned_cols=154 Identities=14% Similarity=0.024 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccC-cchh
Q psy11494 27 DAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISG-TFSA 105 (197)
Q Consensus 27 ~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG-~~~~ 105 (197)
..+...+.+++++++...|.+++.|+..+.+.-..........+...|...+...+..|-..|++++|+++...+ ....
T Consensus 358 ~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 437 (852)
T 4fdd_A 358 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD 437 (852)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHH
Confidence 345667778888899999999999999998654323334566677778888888899999999999999998532 3345
Q ss_pred hhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 106 EYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 106 ~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
.+.+.-+..-++.|..+ ...-|-+|+..|..++.+.+..+.+|++.+++.+...+.+++......+.+++.....
T Consensus 438 ~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 438 TYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512 (852)
T ss_dssp TTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 67776677777777643 4556778889999999998888999999999999999998877666666666665543
No 15
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.04 E-value=0.00014 Score=62.88 Aligned_cols=159 Identities=12% Similarity=0.054 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhhCC--chhHHHHHHHHHHHHhh-cCCCcchhhhHHHHHHHhhhCCCC--ChhHHHHHHHHHHHhhhc
Q psy11494 25 FTDAFNHHIFEMVSAN--DVNEKKSGIIAIVCLLH-VDVGNVNSRNIRFANYLRNLLPSN--DIGVMRYAAKTVGKLAQI 99 (197)
Q Consensus 25 ~~~~l~~~I~~L~~s~--d~~eklggI~aId~Li~-~~~~~~~~~~~rf~~yL~~~l~~~--D~~vm~~AA~~lG~L~~~ 99 (197)
.|.++-..+.+.++++ |..-+.+++.++..+.+ +.+.........+...+..++... +..|-..|.+++|.++..
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3456777788888887 88889999999999985 322222333445666666667655 688889999999997642
Q ss_pred cC-cchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhh-HHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 100 SG-TFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQ-AFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 100 gG-~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~-~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
-+ .+..+.....+-..+.-+-.+..+.-|-+++-.|.+++...|..|-+|++ .+++.++..++|+...||..|.+++.
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~ 284 (462)
T 1ibr_B 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (462)
T ss_dssp THHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 11 11111111111222222223455667888999999999999999999999 99999999999999999999999888
Q ss_pred HHHHHH
Q psy11494 178 AALVVT 183 (197)
Q Consensus 178 ~cL~ii 183 (197)
.+....
T Consensus 285 ~~~~~~ 290 (462)
T 1ibr_B 285 NVCDEE 290 (462)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 16
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.02 E-value=0.00026 Score=66.29 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCc--hhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCC-ChhHHHHHHHHHHHh
Q psy11494 20 EEVTAFTDAFNHHIFEMVSAND--VNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSN-DIGVMRYAAKTVGKL 96 (197)
Q Consensus 20 e~~~~~~~~l~~~I~~L~~s~d--~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~-D~~vm~~AA~~lG~L 96 (197)
+.+..|...+...+..+++++. ..-+..++.+|..++..-+.+-...+..+...|..++... +..+...|.+++|.+
T Consensus 598 ~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l 677 (876)
T 1qgr_A 598 QDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDL 677 (876)
T ss_dssp HHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 6777788888899999987653 1336678888888876432333334455666666666654 788999999999999
Q ss_pred hhccCcchhhhHHHHHHHHHhhhcC-CCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCc----------
Q psy11494 97 AQISGTFSAEYADFEMKKAIEWLGG-DRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPK---------- 165 (197)
Q Consensus 97 ~~~gG~~~~~~Ve~ev~~AlewL~~-~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk---------- 165 (197)
+...|.-...+++.-+...++.|.. +..+.-|.+++..+..++...|.-|.+|++.+++.+-.++.++.
T Consensus 678 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~ 757 (876)
T 1qgr_A 678 CRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDY 757 (876)
T ss_dssp HHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHH
Confidence 9876655566777777778888875 34556788999999999999998899999999999999887663
Q ss_pred -HHHHHHHHHHHHHHHHHHh
Q psy11494 166 -PEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 166 -~~iRe~Aa~aL~~cL~ii~ 184 (197)
..+|+.+.+++...+.-+.
T Consensus 758 ~~~~r~~~~~~~~~i~~~~~ 777 (876)
T 1qgr_A 758 LNELRESCLEAYTGIVQGLK 777 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 3899999999987776654
No 17
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.98 E-value=0.0002 Score=56.07 Aligned_cols=148 Identities=12% Similarity=0.046 Sum_probs=104.4
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhH--HHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNI--RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~--rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
.-..+.+++++++..-+..++.++..|.... .+....+. -....|-.+|.+.|..+...|+++++.|+.........
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 133 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4567888998888877888888888776322 11111111 13456677788889999999999999999743222233
Q ss_pred hHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhh-hhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 107 YADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQH-VQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 107 ~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~-v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
+++. -+..-++.|+.+ ...-|..|+..|..|+...|...... -...++.+...+.|++..+|+.|..+|+.
T Consensus 134 ~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~ 206 (210)
T 4db6_A 134 VIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 206 (210)
T ss_dssp HHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4433 255556666654 55678888999999998866543322 23678889999999999999999999975
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.91 E-value=0.00017 Score=57.99 Aligned_cols=149 Identities=11% Similarity=0.038 Sum_probs=104.1
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCc-chhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGN-VNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~-~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
.-..+.+++++++..-+..++.++..|....... ..-.-......|..++.+.|..+...|++++|.|+.........+
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 176 (252)
T 4db8_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 176 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 4567888888888777777888887775432110 000011245566777788899999999999999997543333333
Q ss_pred HHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhh-HHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 108 ADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQ-AFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 108 Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~-~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
++.. +..-++.|..+ .+.-|..|+..|..|+...|......+. ..++.+-..+++++..+|+.|+.+|..
T Consensus 177 ~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 177 IDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp HHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred HHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4332 55566666654 5666888999999999877765444333 478889999999999999999999874
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.90 E-value=0.00022 Score=56.60 Aligned_cols=151 Identities=14% Similarity=0.101 Sum_probs=105.5
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
.-..+.+++++++..-+..++.++..|.... .+....+ ......|..++.+.|..+...|++++|.|+.........
T Consensus 87 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 165 (252)
T 4hxt_A 87 GVEVLVKLLTSTDSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 165 (252)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4566788888888777777888887777432 1111111 124556667788899999999999999999754333344
Q ss_pred hHHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 107 YADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 107 ~Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
+++.. +..-++.|. +..+.-|..|+..|..|+...|......+ ..+++.+...+.+++..+|+.|..+|.....
T Consensus 166 ~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 166 IVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 44433 444445555 45567788899999999987766443332 4577888899999999999999999986543
No 20
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.88 E-value=0.00031 Score=62.55 Aligned_cols=149 Identities=13% Similarity=0.117 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 27 DAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 27 ~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
..+...+.++++.++-.-+.+.+.+|..+...-+.+ .....+...+...+...+..|-..|+.++|.++..-|. +
T Consensus 401 ~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~ 475 (588)
T 1b3u_A 401 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---E 475 (588)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---H
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---h
Confidence 445566777777777777778888887776432222 11234556666777778889999999999999986432 2
Q ss_pred hHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 107 YADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 107 ~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
+.-..+-..+.-+..+....-|.+++..+..++...+.-+ +.+.+++.+...+.||...||..++.+|..+...
T Consensus 476 ~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 476 WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 2222222333334456677889999999999998755432 5678888999999999999999999999877643
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.86 E-value=0.0004 Score=60.00 Aligned_cols=152 Identities=12% Similarity=0.044 Sum_probs=106.7
Q ss_pred HHHHHHHHHhhCC-chhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcch
Q psy11494 28 AFNHHIFEMVSAN-DVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFS 104 (197)
Q Consensus 28 ~l~~~I~~L~~s~-d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~ 104 (197)
.+-..+.++++++ +..-+..++.++..+..... +....+ ......|..++.+.|..+-..|+++||.++..+....
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~ 142 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNS-LQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 142 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence 3556677777776 66667777777776664321 111111 2355667777888899999999999999987542222
Q ss_pred hhhHHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhC-CchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 105 AEYADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTV-PTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 105 ~~~Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~na-Pt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
..+++.. +..-++.|+.+....-|..|+..|..|+.+. |..-...+..+++.+-..+.+++..+|+.|+.+|+.+.
T Consensus 143 ~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~ 220 (450)
T 2jdq_A 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLS 220 (450)
T ss_dssp HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 2233322 4445556665566777888999999999886 76555666888888889999999999999999988654
No 22
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.81 E-value=0.00046 Score=64.61 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCc-chhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcc-
Q psy11494 26 TDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGN-VNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTF- 103 (197)
Q Consensus 26 ~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~-~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~- 103 (197)
...+...+.+.+++++...|.+++.++..+.+.-..+ .......+...|...+...+..|-..|++++|+++..-+..
T Consensus 364 ~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 443 (876)
T 1qgr_A 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA 443 (876)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhc
Confidence 3445556677778889899999999999887543211 22334555666666677778889999999999999864332
Q ss_pred -hhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCC--------------chhHhhhhHHHHHHHhhhcCCc---
Q psy11494 104 -SAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVP--------------TIFYQHVQAFFDFVFSAVRDPK--- 165 (197)
Q Consensus 104 -~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naP--------------t~~~~~v~~~~d~Iw~aLrDpk--- 165 (197)
...+++.-+...+..|..+ ..-|.+|+..|..++...+ ..+.+|++.+++.+...+.++.
T Consensus 444 ~~~~~l~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~ 521 (876)
T 1qgr_A 444 INDVYLAPLLQCLIEGLSAE--PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQ 521 (876)
T ss_dssp SSTTTHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCS
T ss_pred ccHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcch
Confidence 3567887788888888663 3347778888888887743 4688999999999999999873
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11494 166 PEIRLHAVKAIRAALVV 182 (197)
Q Consensus 166 ~~iRe~Aa~aL~~cL~i 182 (197)
..+|..+.+++......
T Consensus 522 ~~~r~~~~~~l~~l~~~ 538 (876)
T 1qgr_A 522 NNLRSSAYESLMEIVKN 538 (876)
T ss_dssp TTHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 57898888888765543
No 23
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.79 E-value=0.00033 Score=64.70 Aligned_cols=137 Identities=16% Similarity=0.162 Sum_probs=104.0
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHH
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYAD 109 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve 109 (197)
...+.+++++++...|.-|-+++..+.+.. +....-..|.|++-+.+.|+.+-..|-+++|.+.. ....+.+-
T Consensus 51 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~----~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~~l~ 123 (591)
T 2vgl_B 51 FPDVVNCMQTDNLELKKLVYLYLMNYAKSQ----PDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITEYLC 123 (591)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHHHHS----HHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccC----chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHHHHH
Confidence 455777889999999999989998887643 22233446788888999999999999999998852 22333443
Q ss_pred HHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 110 FEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 110 ~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
..+.+++ . +....=|-+|++.|..+....|..+-. +.+++.+-..|.|+.+.||.+|+.+|..+
T Consensus 124 ~~l~~~L---~-d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i 187 (591)
T 2vgl_B 124 EPLRKCL---K-DEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEI 187 (591)
T ss_dssp HHHHHHS---S-CSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHc---C-CCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 4444444 3 567777888888889999999986633 47889999999999999999999999864
No 24
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.77 E-value=0.00086 Score=59.66 Aligned_cols=150 Identities=12% Similarity=0.049 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 27 DAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 27 ~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
+++...+.++++.++..-|..++.++..+.+.-+.+ .....+..+|..++...|..|-..|.+++|.++..-+. +
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~ 237 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ---E 237 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH---H
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH---H
Confidence 344455556666666666777777777776553221 11234455555556666777777778888877764321 1
Q ss_pred hHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q psy11494 107 YADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 107 ~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii 183 (197)
.....+-..+.-+-.+....-|.+|+-.|..++...+.-. +.+.+++.+-..+.|+...||++|+.+|......+
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 312 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 312 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc--chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh
Confidence 1112222222223345666678888888888888754422 34567777888889999999999999988766543
No 25
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.75 E-value=0.00061 Score=61.03 Aligned_cols=150 Identities=12% Similarity=0.040 Sum_probs=108.0
Q ss_pred HHHHHHHhhCCc-hhHHHHHHHHHHHHhhcCCCcchhhhH--HHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 30 NHHIFEMVSAND-VNEKKSGIIAIVCLLHVDVGNVNSRNI--RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 30 ~~~I~~L~~s~d-~~eklggI~aId~Li~~~~~~~~~~~~--rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
-..+.+++++++ ..-+..++.++..|.... .+....+. -....|-.+|.+.|..+-..|+++||+|+..+......
T Consensus 119 v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 197 (528)
T 4b8j_A 119 VPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDL 197 (528)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 455777787766 666777777777776421 12111111 14556667778889999999999999998653222222
Q ss_pred hHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 107 YADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 107 ~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
+++. -+..-+..|..+....-+..|+..|..|+.+.|..-...+...++.+-..|.+++..+|..|..+|..+.
T Consensus 198 i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 198 VLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3332 2556667775556677788899999999999887777778899999999999999999999999998653
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.61 E-value=0.0012 Score=56.99 Aligned_cols=150 Identities=14% Similarity=0.061 Sum_probs=104.4
Q ss_pred HHHHHHHhhC-CchhHHHHHHHHHHHHhhcC-CCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 30 NHHIFEMVSA-NDVNEKKSGIIAIVCLLHVD-VGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 30 ~~~I~~L~~s-~d~~eklggI~aId~Li~~~-~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
-..+.+++++ ++..-+..++.++..|.... .......+..+...|..++...|..+...|+++++.|+.........+
T Consensus 151 i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 230 (450)
T 2jdq_A 151 LPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAV 230 (450)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4556777764 56666778888888887543 111223345566777778888999999999999999987532222223
Q ss_pred HHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 108 ADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 108 Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
++. -+..-++.|. +....-|.+|+..|..|+...|...-..+ ..+++.+...+.|++..+|..|+.+|..+.
T Consensus 231 ~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~ 304 (450)
T 2jdq_A 231 IDAGVCRRLVELLM-HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNIT 304 (450)
T ss_dssp HHTTTHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred HHcCcHHHHHHHHC-CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 322 2445556665 44566788999999999988775432222 257888899999999999999999987653
No 27
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.59 E-value=0.0011 Score=59.56 Aligned_cols=150 Identities=13% Similarity=0.030 Sum_probs=105.6
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcC-CCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhH
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVD-VGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYA 108 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~-~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~V 108 (197)
-..+.+++++++..-+..++.++..|.... ..............|..++...|..+...|+++++.|+.........++
T Consensus 217 l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~ 296 (530)
T 1wa5_B 217 MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 296 (530)
T ss_dssp HHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 355777887777666777888888887543 1112222344566677778888999999999999999865333333344
Q ss_pred HH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 109 DF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 109 e~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
+. -+..-++.|.. ....-|..|+..|..|+...|...-..+ ..+++.+...|.+++..+|+.|+.+|..+.
T Consensus 297 ~~~~v~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~ 369 (530)
T 1wa5_B 297 DVRIPKRLVELLSH-ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT 369 (530)
T ss_dssp HTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hcCcHHHHHHHHCC-CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 42 24555666664 4566788899999999987765433322 367888889999999999999999998653
No 28
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.46 E-value=0.0069 Score=51.56 Aligned_cols=161 Identities=14% Similarity=0.051 Sum_probs=120.3
Q ss_pred HHHHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHH
Q psy11494 10 VRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYA 89 (197)
Q Consensus 10 v~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~A 89 (197)
+....++++..--.+-..++...|.++.+++|-.=.+.|+-+|..|++-. .-+.+.+.+..+-|..++.+++.-+-..|
T Consensus 57 LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v-pL~~~~y~Kl~~aL~dlik~~~~il~~ea 135 (265)
T 3b2a_A 57 LGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV-PMGSKTFLKAAKTLVSLLESPDDMMRIET 135 (265)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 34556666666666777788888999998887666678999999998543 23567799999999999999999999999
Q ss_pred HHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHH
Q psy11494 90 AKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIR 169 (197)
Q Consensus 90 A~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iR 169 (197)
|.++|++ ++ .+.+..-+..-++-+ ..++..-+-||.-.|.|+|-.+-- -.++..+|+.|=..|..+.+.++
T Consensus 136 ae~Lgkl-kv-----~~~~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~D--~~i~~~I~~eI~elL~~eD~~l~ 206 (265)
T 3b2a_A 136 IDVLSKL-QP-----LEDSKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSAD--SGHLTLILDEIPSLLQNDNEFIV 206 (265)
T ss_dssp HHHHHHC-CB-----SCCCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCSS--CCCGGGTTTTHHHHHTCSCHHHH
T ss_pred HHHhCcC-Cc-----ccchHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccCC--HHHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999 32 222222233444555 567777789999999999886521 02356677788888899999999
Q ss_pred HHHHHHHHHHH
Q psy11494 170 LHAVKAIRAAL 180 (197)
Q Consensus 170 e~Aa~aL~~cL 180 (197)
+-|..++-..+
T Consensus 207 e~aLd~Le~il 217 (265)
T 3b2a_A 207 ELALDVLEKAL 217 (265)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99988876443
No 29
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.45 E-value=0.0046 Score=50.63 Aligned_cols=128 Identities=10% Similarity=0.052 Sum_probs=70.0
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHH
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYAD 109 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve 109 (197)
...+.+++++++...+..++.++..+- + ......|..++...|..+-..|++++|++...... +.
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~-----~-----~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~-----~~ 89 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG-----G-----QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-----ED 89 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC-----C-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-----HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC-----C-----chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-----ch
Confidence 346677777777777777666665432 1 12344455666677888888888888877543221 11
Q ss_pred HHHHHHHh-hhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 110 FEMKKAIE-WLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 110 ~ev~~Ale-wL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
.-+ ..+. ++..+....-|.+|+..|.++....|. +.+.+++.+...+.||+..||..|+.+|.
T Consensus 90 ~l~-~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 90 NVF-NILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAIS 153 (280)
T ss_dssp HHH-HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 111 1111 222344555566666677666644331 22344444555555666666665555554
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.42 E-value=0.00068 Score=60.94 Aligned_cols=150 Identities=13% Similarity=0.056 Sum_probs=100.6
Q ss_pred HHHHHHHHhhCC-chhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchh
Q psy11494 29 FNHHIFEMVSAN-DVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSA 105 (197)
Q Consensus 29 l~~~I~~L~~s~-d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~ 105 (197)
+-..+.++++++ +..-+..++.++..|..... +....+ ......|..+|.+.|..+...|+++||.|+..+.....
T Consensus 131 ~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 209 (530)
T 1wa5_B 131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTS-AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 209 (530)
T ss_dssp CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchH
Confidence 345677777766 66667777777776664321 111001 11233444455567999999999999999875322222
Q ss_pred hhHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhC-CchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 106 EYADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTV-PTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 106 ~~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~na-Pt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
.+++. -+..-++.|.. ....-+..|+..|..|+.+. |..-......+++.+-..|.|+...+|..|+.+|..+.
T Consensus 210 ~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 210 YVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 285 (530)
T ss_dssp HHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 23332 24455556665 44455667899999999886 77667777889999999999999999999999998654
No 31
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.39 E-value=0.0023 Score=57.25 Aligned_cols=149 Identities=11% Similarity=0.019 Sum_probs=104.6
Q ss_pred HHHHHHh-hCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHH
Q psy11494 31 HHIFEMV-SANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYAD 109 (197)
Q Consensus 31 ~~I~~L~-~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve 109 (197)
..+..++ ++++..-+..++.++..|..................|..++.+.|..+...|+++++.|+.........+++
T Consensus 205 ~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 284 (528)
T 4b8j_A 205 LPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE 284 (528)
T ss_dssp HHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4466666 566766677778888877754322223334456677777888899999999999999998653333333443
Q ss_pred H-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH
Q psy11494 110 F-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDP-KPEIRLHAVKAIRAAL 180 (197)
Q Consensus 110 ~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDp-k~~iRe~Aa~aL~~cL 180 (197)
. -+..-++.|..+ .+.-+..|+..|..|+...|...-..+ ..+++.+...|.++ +..||..|+.+|..+.
T Consensus 285 ~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~ 357 (528)
T 4b8j_A 285 AGVCPRLVELLLHP-SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNIT 357 (528)
T ss_dssp TTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCC-ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 2 245556666654 456788899999999987765443333 45778888889999 9999999999988764
No 32
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.30 E-value=0.0025 Score=59.33 Aligned_cols=134 Identities=15% Similarity=0.173 Sum_probs=100.5
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHH
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADF 110 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ 110 (197)
-.+.+++.|++..+|+=|-+++..+.+-+ .....-..|.|.+-+.++++.+.-.|.+++|.+..+ -..+.+..
T Consensus 73 ~~vik~~~s~~~~~Krl~Yl~~~~~~~~~----~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~---~~~~~l~~ 145 (618)
T 1w63_A 73 LECLKLIASQKFTDKRIGYLGAMLLLDER----QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSS---EMCRDLAG 145 (618)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH---HHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH---HHHHHHHH
Confidence 45677788888888888888888777543 233455777888888889999999999999999743 12233334
Q ss_pred HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 111 EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 111 ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
.+.+++ .. .+..=|-+|++-|.-+.+..|..+ ..+++.+-..|.|+++.|+-+|..+|...
T Consensus 146 ~l~~~L---~~-~~~~VRk~A~~al~~l~~~~p~~v----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i 206 (618)
T 1w63_A 146 EVEKLL---KT-SNSYLRKKAALCAVHVIRKVPELM----EMFLPATKNLLNEKNHGVLHTSVVLLTEM 206 (618)
T ss_dssp HHHHHH---HS-CCHHHHHHHHHHHHHHHHHCGGGG----GGGGGGTTTSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHH---cC-CCHHHHHHHHHHHHHHHHHChHHH----HHHHHHHHHHhCCCCHhHHHHHHHHHHHH
Confidence 444444 33 566677788888888999999755 46788888999999999999999888764
No 33
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.29 E-value=0.0079 Score=46.70 Aligned_cols=84 Identities=24% Similarity=0.198 Sum_probs=44.3
Q ss_pred HhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHH
Q psy11494 74 LRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAF 153 (197)
Q Consensus 74 L~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~ 153 (197)
|...+...|..|-..|++++|++..+ +.++ .-++.|. +....-|.+|+..|..+.. +..
T Consensus 81 L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~----~L~~~l~-d~~~~vr~~a~~aL~~~~~----------~~~ 139 (201)
T 3ltj_A 81 LIKALKDEDGWVRQSAAVALGQIGDE------RAVE----PLIKALK-DEDWFVRIAAAFALGEIGD----------ERA 139 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCG------GGHH----HHHHHTT-CSSHHHHHHHHHHHHHHTC----------GGG
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCcH------HHHH----HHHHHHc-CCCHHHHHHHHHHHHHhCC----------HHH
Confidence 33444455556666666666655322 1111 1122232 3344455566666655532 244
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 154 FDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 154 ~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
++.+-..+.|++..||..|+.+|..
T Consensus 140 ~~~L~~~l~d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 140 VEPLIKALKDEDGWVRQSAADALGE 164 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5556666777777777777777764
No 34
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.27 E-value=0.0042 Score=53.28 Aligned_cols=150 Identities=15% Similarity=0.205 Sum_probs=100.7
Q ss_pred HHHHHHHhhCC------------chhHHHHHHHHHHHHhhcCCCcchhhhHHH--HHHHhh-hCCCCChhHHHHHHHHHH
Q psy11494 30 NHHIFEMVSAN------------DVNEKKSGIIAIVCLLHVDVGNVNSRNIRF--ANYLRN-LLPSNDIGVMRYAAKTVG 94 (197)
Q Consensus 30 ~~~I~~L~~s~------------d~~eklggI~aId~Li~~~~~~~~~~~~rf--~~yL~~-~l~~~D~~vm~~AA~~lG 94 (197)
-..+...+.++ +..+|..++-.+..|++- .++.+.+.+. ..+|-. +|.+.|..+-..|++++|
T Consensus 30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~--~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg 107 (296)
T 1xqr_A 30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN--MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG 107 (296)
T ss_dssp HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC--hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34566666665 235677777777777753 2333332221 123444 788899999999999999
Q ss_pred HhhhccCcchhhhHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHH
Q psy11494 95 KLAQISGTFSAEYADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHA 172 (197)
Q Consensus 95 ~L~~~gG~~~~~~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~A 172 (197)
.++.........+++. =+..-+..|..+....-|-.|+..|.-|+++.|...-..+ ...++.+-..|++++..++..|
T Consensus 108 ~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A 187 (296)
T 1xqr_A 108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS 187 (296)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 9987543344445543 3555566676554556677889999999988765332222 2467777888899999999999
Q ss_pred HHHHHHHHH
Q psy11494 173 VKAIRAALV 181 (197)
Q Consensus 173 a~aL~~cL~ 181 (197)
+-||+....
T Consensus 188 ~~aLs~L~~ 196 (296)
T 1xqr_A 188 AFLLQNLLV 196 (296)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999997654
No 35
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.26 E-value=0.0047 Score=48.39 Aligned_cols=47 Identities=17% Similarity=0.012 Sum_probs=30.1
Q ss_pred CCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 122 DRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 122 ~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
+....-|.+|+..|..+.. +...+.+...+.|++..||..|..+|..
T Consensus 154 d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 154 DEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3444556666666666532 4556666667777778888888777763
No 36
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.14 E-value=0.014 Score=45.61 Aligned_cols=46 Identities=22% Similarity=0.164 Sum_probs=25.9
Q ss_pred CcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 123 RVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 123 r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
....-|.+|+..|..+.. +..++.+...+.|++..||..|+.+|..
T Consensus 124 ~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDEDGWVRQSAADALGE 169 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 333445555555555421 2344555566677777777777776653
No 37
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.08 E-value=0.0098 Score=46.17 Aligned_cols=116 Identities=18% Similarity=0.072 Sum_probs=77.6
Q ss_pred HHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH
Q psy11494 32 HIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE 111 (197)
Q Consensus 32 ~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e 111 (197)
.+.+++++++..-+..++.++..+-+ ......|..++...|..|-..|++++|++..+ +.+
T Consensus 80 ~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~--- 140 (201)
T 3ltj_A 80 PLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE------RAV--- 140 (201)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG------GGH---
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH------HHH---
Confidence 34555555555555555555544321 12344566677788999999999999998542 122
Q ss_pred HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 112 MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 112 v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
..-++.|. +....-|.+|+..|..+. -+...+.+...+.|+...||..|..+|..
T Consensus 141 -~~L~~~l~-d~~~~vr~~A~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 141 -EPLIKALK-DEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp -HHHHHHTT-CSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred -HHHHHHHc-CCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 12223343 456677888998888873 24677778888899999999999999874
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.05 E-value=0.011 Score=50.55 Aligned_cols=150 Identities=12% Similarity=0.066 Sum_probs=97.5
Q ss_pred HHHHH-HhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHH--HHHHHhhhCC-CCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 31 HHIFE-MVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR--FANYLRNLLP-SNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 31 ~~I~~-L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~r--f~~yL~~~l~-~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
..+.. ++++++..=|..++.+|..+..-. ......+.. -...|-.+|. ..+..+.+.|+++++.+++........
T Consensus 84 ~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n-~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~ 162 (296)
T 1xqr_A 84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 162 (296)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 34666 777777777777777777776321 111111111 2233444444 358899999999999998743222334
Q ss_pred hHHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 107 YADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 107 ~Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
|++.. +..-+..|+.. ...-+-.|+..|..|+...|...-..+ ..+++.+-..|+++...||+.|+.||..++..
T Consensus 163 ~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 163 FLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 55532 44455556654 444556788999999998765432222 35777778889999999999999999988765
No 39
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.97 E-value=0.0062 Score=57.03 Aligned_cols=138 Identities=21% Similarity=0.220 Sum_probs=101.9
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHH
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADF 110 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ 110 (197)
-.+.+++.|+|..+|+-|-+++..+.+.+ +....-..|.+++=+.++++-+.-.|-+++|.+..+ ...+.+..
T Consensus 77 ~~vvkl~~s~~~~~Krl~YL~l~~~~~~~----~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~---e~~~~l~~ 149 (621)
T 2vgl_A 77 MEAVNLLSSNRYTEKQIGYLFISVLVNSN----SELIRLINNAIKNDLASRNPTFMGLALHCIANVGSR---EMAEAFAG 149 (621)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHSCCCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCH---HHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHccCC----cHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCH---HHHHHHHH
Confidence 34667888999999999999988777543 233455677777778888999999999999998653 23444445
Q ss_pred HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 111 EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 111 ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
.|++++- ..+....=|-.|++-+.-+.+..|..+-. +.+++.+...|.|+++.|..+|..++..+
T Consensus 150 ~v~~~l~--~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 150 EIPKILV--AGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQHLGVVTAATSLITTL 214 (621)
T ss_dssp HHHHHHH--CSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHh--CCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 5555551 24555566667777777788888876643 57889999999999999999999887764
No 40
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.88 E-value=0.016 Score=52.41 Aligned_cols=154 Identities=8% Similarity=0.049 Sum_probs=101.6
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
+...+.+++.+++..-+..++.+|..|.... ++....+ ......|..++.+.+..+-+.|+++++.|+.........
T Consensus 294 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~ 372 (529)
T 3tpo_A 294 VVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 372 (529)
T ss_dssp CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred chHHHHHHhcCCChhHHHHHHHHHHHHHccc-hHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3466788888888777778888887776432 1111111 113345667788899999999999999998743332333
Q ss_pred hHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhh--hhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q psy11494 107 YADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQH--VQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 107 ~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~--v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii 183 (197)
+++. -+..-+..|.....+ -|..|+..|.-|+.....--..+ =..+++.+-..|.++...|+..+.++|...|...
T Consensus 373 v~~~g~i~~Lv~lL~~~~~~-v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 373 VVNHGLVPFLVGVLSKADFK-TQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HHHTTHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCHH-HHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 4443 244455666655444 45667788888988754321111 1235666677889999999999999999988765
Q ss_pred h
Q psy11494 184 A 184 (197)
Q Consensus 184 ~ 184 (197)
.
T Consensus 452 ~ 452 (529)
T 3tpo_A 452 E 452 (529)
T ss_dssp H
T ss_pred H
Confidence 4
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.87 E-value=0.022 Score=46.49 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=40.9
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHh-hhCCCCChhHHHHHHHHHHHhhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLR-NLLPSNDIGVMRYAAKTVGKLAQ 98 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~-~~l~~~D~~vm~~AA~~lG~L~~ 98 (197)
.-..+.+++++++..-+..++.++..+-... + .+......|. .++...|..|-..|++++|++..
T Consensus 55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--~---~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~ 120 (280)
T 1oyz_A 55 AVRLAIEFCSDKNYIRRDIGAFILGQIKICK--K---CEDNVFNILNNMALNDKSACVRATAIESTAQRCK 120 (280)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--T---THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--c---cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence 4456788888888877888877775543111 1 1222333343 23456778888888888888764
No 42
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.87 E-value=0.0097 Score=53.85 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=98.8
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchh
Q psy11494 28 AFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSA 105 (197)
Q Consensus 28 ~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~ 105 (197)
.+-..+..++++++..-+..+..|+..|.+.. .+....+ ......|..+|.+.|..+...|++++|.++......+.
T Consensus 251 ~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 329 (529)
T 3tpo_A 251 QILPTLVRLLHHNDPEVLADSCWAISYLTDGP-NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 329 (529)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhh-hhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHH
Confidence 34455777888888776777777777776432 1111101 11234455667788999999999999999864333333
Q ss_pred hhHHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 106 EYADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 106 ~~Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
.+++.- +..-+..|.. ....-|..|+..|..|+.+.|.....-+ ..++..+-..+.++...+|..|+.||..+.
T Consensus 330 ~i~~~g~l~~L~~LL~~-~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~ 405 (529)
T 3tpo_A 330 KVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYT 405 (529)
T ss_dssp HHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHhhcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 344332 2333445554 4455566788999999988776443333 246677777889999999999999988643
No 43
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.84 E-value=0.049 Score=52.17 Aligned_cols=139 Identities=9% Similarity=0.034 Sum_probs=98.4
Q ss_pred hCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHh
Q psy11494 38 SANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIE 117 (197)
Q Consensus 38 ~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~Ale 117 (197)
.+++-.++-+++.||.++.+.-..+....+.+.-..|-. ++.+++.|...+.+++|+++.--+. ..+++..-+..-++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~-~~~~l~~vl~~l~~ 536 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLAD-HPVMINSVLPLVLH 536 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHH-CHHHHTTTHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence 566778899999999999865322222334444444332 3445788889999999999864211 12566666677777
Q ss_pred hhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcC--CcHHHHHHHHHHHHHHHH
Q psy11494 118 WLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRD--PKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 118 wL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrD--pk~~iRe~Aa~aL~~cL~ 181 (197)
.|+. . .=+.+|+..|..+++..+..+.+|++.+++.+...+.. .+...|+...+|+...+.
T Consensus 537 ~l~~--~-~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 537 ALGN--P-ELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HTTC--G-GGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HhCC--c-hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 7754 2 33456777888999999999999999999999998885 456788888887776553
No 44
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.75 E-value=0.026 Score=52.44 Aligned_cols=70 Identities=11% Similarity=0.167 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhc
Q psy11494 26 TDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQI 99 (197)
Q Consensus 26 ~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~ 99 (197)
...+...|..++++++..=|+.++.|+..+..... + .+..|...+..++...|+.|+..|..+++.++..
T Consensus 140 ~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p-~---~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 140 CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP-E---LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG-G---GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh-H---HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh
Confidence 44556778888888999999999999999987542 2 2446777788888888888888888888877643
No 45
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.69 E-value=0.017 Score=52.19 Aligned_cols=155 Identities=8% Similarity=0.057 Sum_probs=101.7
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhH--HHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNI--RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~--rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
+...+.+++.+++..-+..++.+|..|.... ++....+. .....|..++.+.+..+-+.|+++++.|+.........
T Consensus 275 ~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~ 353 (510)
T 3ul1_B 275 VVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353 (510)
T ss_dssp CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cchhhhhhhcCCChhhhhHHHHHHHHhhcCC-HHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 3466888888888877888888887776432 11111111 12334556677889999999999999998653333333
Q ss_pred hHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhh--hhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q psy11494 107 YADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQH--VQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 107 ~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~--v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii 183 (197)
+++. -+..-++.|.....+ -|..|+..|.-|+.+...--..+ =...++.+-..|.++...|+..+.++|...|+.-
T Consensus 354 v~~~g~i~~Lv~lL~~~~~~-v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 354 VVNHGLVPFLVGVLSKADFK-TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp HHHTTHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHcCCCHH-HHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 3332 245566777665444 45667788888988754322222 1345666677889999999999999999988765
Q ss_pred hh
Q psy11494 184 AQ 185 (197)
Q Consensus 184 ~~ 185 (197)
.+
T Consensus 433 ~~ 434 (510)
T 3ul1_B 433 EK 434 (510)
T ss_dssp HT
T ss_pred Hh
Confidence 43
No 46
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.69 E-value=0.0078 Score=54.40 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=97.1
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
+-..+..++++++..-+..+..|+..|.+.. .+....+ ......|..++.+.+..+...|++++|.++......+..
T Consensus 233 ~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~ 311 (510)
T 3ul1_B 233 ILPTLVRLLHHNDPEVLADSCWAISYLTDGP-NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 311 (510)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhch-hhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHH
Confidence 4455677778888777777777777776432 1111101 113344556677889999999999999998643333333
Q ss_pred hHHHHH-HHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 107 YADFEM-KKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 107 ~Ve~ev-~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
+++.-+ ..-+.+|. +....-|..|+..|..|+.+.|.....-+ ..++..+-..+++++..+|..|+.||..+.
T Consensus 312 i~~~g~l~~L~~LL~-~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~ 386 (510)
T 3ul1_B 312 VIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 386 (510)
T ss_dssp HHHTTGGGGCC-CTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HhhccchHHHHHHhc-CCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 333221 11123333 34556677889999999988776433322 356777788889999999999999998643
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.64 E-value=0.067 Score=49.20 Aligned_cols=146 Identities=14% Similarity=0.198 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcc-hh
Q psy11494 27 DAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTF-SA 105 (197)
Q Consensus 27 ~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~-~~ 105 (197)
..+...+..+++++++.=|+.++.|+..+.... .+... -..|...|..+|...|+.|...|+.++++++...+.. .-
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~-~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVE-DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHH-HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcc-cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence 344556888888889888999999999998754 23111 1368889999999999999999999999998864321 11
Q ss_pred hhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 106 EYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 106 ~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
++...-+.+-+..|.. ..-++-+.+|+-|+.-.|.- -.....+++.+-..++|++..|+-.|+.++..+
T Consensus 198 ~l~~~~~~~Ll~~l~~----~~~~~q~~il~~l~~l~~~~-~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 198 DLNPQNINKLLTALNE----CTEWGQIFILDCLSNYNPKD-DREAQSICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp CCHHHHHHHHHHHHHH----CCHHHHHHHHHHHHTSCCCS-HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred hccHHHHHHHHHcCCC----CCchHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 2211222222222221 11234466777776666642 134567888888899999999999998887654
No 48
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.63 E-value=0.042 Score=52.94 Aligned_cols=136 Identities=13% Similarity=0.112 Sum_probs=93.9
Q ss_pred CchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCC--CChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHh
Q psy11494 40 NDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPS--NDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIE 117 (197)
Q Consensus 40 ~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~--~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~Ale 117 (197)
++-.++-+++.|+.++.+.-..+....+..+-+.+ ..++. .++.|-..|.+++|+++.-=+. ..++.+.-+..-+.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l-~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~ 553 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVL-AEIPYEKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVR 553 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHHHH-HHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH-HhcCccccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 56678999999999987543222223345555533 33453 3788889999999999874221 12566666666666
Q ss_pred hhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCC--cHHHHHHHHHHHHHHHH
Q psy11494 118 WLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDP--KPEIRLHAVKAIRAALV 181 (197)
Q Consensus 118 wL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDp--k~~iRe~Aa~aL~~cL~ 181 (197)
.|. .. =+-+|+..+..|++..+..+.+|++.+++.+...+..+ +...++...+|+.....
T Consensus 554 ~l~---~~-v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 554 GLN---SS-MSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHH---SS-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HhC---hH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 662 22 35667777889999999999999999999999999984 57888888887776654
No 49
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.63 E-value=0.052 Score=52.56 Aligned_cols=141 Identities=12% Similarity=0.017 Sum_probs=94.9
Q ss_pred CCchhHHHHHHHHHHHHhhcC-----CCcch-h--hhHHH-HHHHhhhCCCC---ChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 39 ANDVNEKKSGIIAIVCLLHVD-----VGNVN-S--RNIRF-ANYLRNLLPSN---DIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 39 s~d~~eklggI~aId~Li~~~-----~~~~~-~--~~~rf-~~yL~~~l~~~---D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
+++-..|-+++.|+.++.+.. +.... . .+..| .+++...+... .+-|-..|.+++|+++.. +..+
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~---~~~~ 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ---LTKA 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG---SCHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh---CCHH
Confidence 566678899999999997531 11100 0 23332 34444444444 677888999999999874 4567
Q ss_pred hHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhh-----------CCchhHhhhhHHHHHHHhhhcCC-----cHHHHH
Q psy11494 107 YADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVT-----------VPTIFYQHVQAFFDFVFSAVRDP-----KPEIRL 170 (197)
Q Consensus 107 ~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~n-----------aPt~~~~~v~~~~d~Iw~aLrDp-----k~~iRe 170 (197)
+.+.-+...+..|..+. -.=|.+|+.-|..++.+ .+..+-+|++.+++.+...+... +....+
T Consensus 493 ~l~~~l~~l~~~L~d~~-~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 493 QLIELMPILATFLQTDE-YVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp HHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred HHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 77777777778887542 22367888888998875 35678999999999999998874 223446
Q ss_pred HHHHHHHHHHHHH
Q psy11494 171 HAVKAIRAALVVT 183 (197)
Q Consensus 171 ~Aa~aL~~cL~ii 183 (197)
.+.+|+..+....
T Consensus 572 ~l~~al~~vv~~~ 584 (960)
T 1wa5_C 572 FLMRSIFRVLQTS 584 (960)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777776665543
No 50
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.54 E-value=0.044 Score=48.17 Aligned_cols=148 Identities=11% Similarity=-0.015 Sum_probs=87.6
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
-..+.+++++++..-+..++.++..|...+. +....+ ......|-.++.+.+.++...++.+++.|+.........+
T Consensus 103 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i 181 (529)
T 1jdh_A 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 181 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT-THHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-chHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3457777888877667777777777764431 111111 2234455566677889999999999999986211122223
Q ss_pred HHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 108 ADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 108 Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
++.. +..-++.|+....+.++.+++-+|..|+.+...--...-...++.+-..+.|++..+++.|+.+|..
T Consensus 182 ~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~ 253 (529)
T 1jdh_A 182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253 (529)
T ss_dssp HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 3322 4444556666667888889999998888643211111112445555555666666666666555543
No 51
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.45 E-value=0.04 Score=48.44 Aligned_cols=112 Identities=17% Similarity=0.100 Sum_probs=77.8
Q ss_pred HHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH-HHHHHhhhcC-CCcchhhHHHHHHHHHHHhhCCchh
Q psy11494 69 RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE-MKKAIEWLGG-DRVEGKRHAAVLVLKELAVTVPTIF 146 (197)
Q Consensus 69 rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e-v~~AlewL~~-~r~e~rR~AAvLvLrELa~naPt~~ 146 (197)
.+...|-.++.+.|.++...|++++++|+..+......+++.. ++.-++.|.. +..+.-+..|+..|.-|+.+.|..=
T Consensus 266 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~ 345 (529)
T 1jdh_A 266 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 345 (529)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHH
Confidence 4455666777889999999999999999875322333344432 4555666654 2335678899999999998877521
Q ss_pred ----HhhhhHHHHHHHhhhcCCc-HHHHHHHHHHHHHHH
Q psy11494 147 ----YQHVQAFFDFVFSAVRDPK-PEIRLHAVKAIRAAL 180 (197)
Q Consensus 147 ----~~~v~~~~d~Iw~aLrDpk-~~iRe~Aa~aL~~cL 180 (197)
...-...++.+-..|++++ ..+|..|+.+|+.+.
T Consensus 346 ~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~ 384 (529)
T 1jdh_A 346 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 384 (529)
T ss_dssp HHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHh
Confidence 1111245677888899997 599999998887654
No 52
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=96.30 E-value=0.085 Score=46.99 Aligned_cols=109 Identities=19% Similarity=0.110 Sum_probs=73.6
Q ss_pred HHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHH--HHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHH
Q psy11494 32 HIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR--FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYAD 109 (197)
Q Consensus 32 ~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~r--f~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve 109 (197)
.+..+++++|...+..+..+|..|..-+ .+....+.. ....|-.+|.+.|..+...|+++|+.|+.........+++
T Consensus 6 ~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~ 84 (457)
T 1xm9_A 6 KAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR 84 (457)
T ss_dssp HHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4667888888888999999988876321 121112222 3345566677889999999999999998742222233434
Q ss_pred HH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhh
Q psy11494 110 FE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVT 141 (197)
Q Consensus 110 ~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~n 141 (197)
.- |..-++.|.......-+.-|+..|..|+.+
T Consensus 85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC
Confidence 22 666677787445556667788999999988
No 53
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.28 E-value=0.045 Score=45.44 Aligned_cols=105 Identities=11% Similarity=0.064 Sum_probs=77.8
Q ss_pred hhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCch
Q psy11494 66 RNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTI 145 (197)
Q Consensus 66 ~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~ 145 (197)
.+....-.+..-..-+|++.-..-+-+||++++.-..+..+.++ =+-.+-+++++..|++|.-++-.|..|.|-
T Consensus 104 ~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~r-----di~smltskd~~Dkl~aLnFi~alGen~~~- 177 (253)
T 2db0_A 104 LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVR-----DFMSMLSSKNREDKLTALNFIEAMGENSFK- 177 (253)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHH-----HHHHHTSCSSHHHHHHHHHHHHTCCTTTHH-
T ss_pred HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHH-----HHHHHhcCCChHHHHHHHHHHHHHhccCcc-
Confidence 34444444444455568888888888888888764445555542 233444578899999999999999999875
Q ss_pred hHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 146 FYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 146 ~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
|+..|++.++..|.|....||-.|+++|-..
T Consensus 178 ---yv~PfLprL~aLL~D~deiVRaSaVEtL~~l 208 (253)
T 2db0_A 178 ---YVNPFLPRIINLLHDGDEIVRASAVEALVHL 208 (253)
T ss_dssp ---HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHH
T ss_pred ---ccCcchHHHHHHHcCcchhhhHHHHHHHHHH
Confidence 5566677888999999999999999998643
No 54
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.19 E-value=0.09 Score=48.48 Aligned_cols=149 Identities=11% Similarity=-0.015 Sum_probs=88.3
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
-..+.+++++++..-+.-++.+|..|.... .+....+ ......|..+|.+.+.++-..|+.+++.|+.........+
T Consensus 100 i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i 178 (644)
T 2z6h_A 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178 (644)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 456778888888777888888888876543 1211111 2244556666777788888888899999986322222233
Q ss_pred HHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 108 ADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 108 Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
++.. +..-++.|+....+..+.+++-+|+.|+.+...--...-...++.+-..+.+++..+|+.++.+|+.+
T Consensus 179 ~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3322 44555666666667778888888888886433211111112444455555555555555555555443
No 55
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.10 E-value=0.077 Score=45.19 Aligned_cols=154 Identities=10% Similarity=0.066 Sum_probs=94.1
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhH
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYA 108 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~V 108 (197)
++..+...+-++|..+++.|+-.|...++-...+.-..+=-+-.|+.--+-.++..|...+-.++..++..-+.....+.
T Consensus 47 ~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 47 AKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp BCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 45667777778899889988888877765432111111111222332223367888888888888776543211222244
Q ss_pred HHHHHHH----HhhhcCCCcchhhHHHHHHHHHHHhh-CCchhHhhhh------------------------------HH
Q psy11494 109 DFEMKKA----IEWLGGDRVEGKRHAAVLVLKELAVT-VPTIFYQHVQ------------------------------AF 153 (197)
Q Consensus 109 e~ev~~A----lewL~~~r~e~rR~AAvLvLrELa~n-aPt~~~~~v~------------------------------~~ 153 (197)
++|...- +|=| ++.++.=|-++--+|+.|..- .|+.+++++- ..
T Consensus 127 ~~ea~~~lP~LveKl-Gd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~ 205 (266)
T 2of3_A 127 QEEVSAFVPYLLLKT-GEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKS 205 (266)
T ss_dssp HHHHHHHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGG
T ss_pred HHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 4443333 3334 556666677777788888775 5555666631 34
Q ss_pred H---HHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q psy11494 154 F---DFVFSAVRDPKPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 154 ~---d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii 183 (197)
+ ..|=..+-||+..||++|..++-.|..++
T Consensus 206 l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp GCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 4 66777788888888888888888777665
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.08 E-value=0.062 Score=53.45 Aligned_cols=139 Identities=8% Similarity=0.037 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhhcCCCcchhhhHHH---HHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCC
Q psy11494 46 KSGIIAIVCLLHVDVGNVNSRNIRF---ANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGD 122 (197)
Q Consensus 46 lggI~aId~Li~~~~~~~~~~~~rf---~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~ 122 (197)
-|+..+|..|....+..... -.-| ...+-.....++..|-..|..+.--++. .+..+-+-.-+..-++.|...
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~ 145 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSV-EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVN---AVNPVAIKALLPHLTNAIVET 145 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTT-HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHH---HSCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCCc-ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHhccc
Confidence 67788888887554322111 1112 2222223334556655555545555544 344555566677778888877
Q ss_pred CcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhcch
Q psy11494 123 RVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRES 188 (197)
Q Consensus 123 r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~Re~ 188 (197)
.++.-|.+|.-+|..|+..+|..+-..++.++..+=.+++|-|..|-.+|.+++..|-.++..+|=
T Consensus 146 ~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~ 211 (986)
T 2iw3_A 146 NKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI 211 (986)
T ss_dssp CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT
T ss_pred cchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch
Confidence 789999999999999999999999999999999999999999999999999999999999988874
No 57
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.96 E-value=0.081 Score=48.80 Aligned_cols=112 Identities=17% Similarity=0.111 Sum_probs=77.4
Q ss_pred HHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH-HHHHHhhhcCC-CcchhhHHHHHHHHHHHhhCCchh
Q psy11494 69 RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE-MKKAIEWLGGD-RVEGKRHAAVLVLKELAVTVPTIF 146 (197)
Q Consensus 69 rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e-v~~AlewL~~~-r~e~rR~AAvLvLrELa~naPt~~ 146 (197)
.....|-.++.+.|.++...|+++++.|+..+......+++.. ++.-++.|... ..+.-+..|+..|..|+.+.|..-
T Consensus 263 ~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~ 342 (644)
T 2z6h_A 263 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 342 (644)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHH
Confidence 4555666677889999999999999999875322223333322 55555666542 235778899999999987766422
Q ss_pred Hhh----hhHHHHHHHhhhcCCc-HHHHHHHHHHHHHHH
Q psy11494 147 YQH----VQAFFDFVFSAVRDPK-PEIRLHAVKAIRAAL 180 (197)
Q Consensus 147 ~~~----v~~~~d~Iw~aLrDpk-~~iRe~Aa~aL~~cL 180 (197)
..+ -...++.+-..|++++ ..||+.|+.+|+.+.
T Consensus 343 ~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa 381 (644)
T 2z6h_A 343 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 381 (644)
T ss_dssp HHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHc
Confidence 111 1346777888899886 699999999888643
No 58
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.93 E-value=0.0043 Score=45.80 Aligned_cols=122 Identities=13% Similarity=0.006 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcc
Q psy11494 24 AFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTF 103 (197)
Q Consensus 24 ~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~ 103 (197)
.+.......+.++++++|..-|..++.++.. ++ +.. ...|..++...|..|-..|++++|++..+
T Consensus 8 ~~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~---~~--~~~------~~~L~~~L~d~~~~vR~~A~~aL~~~~~~---- 72 (131)
T 1te4_A 8 HHHSSGLVPRGSHMADENKWVRRDVSTALSR---MG--DEA------FEPLLESLSNEDWRIRGAAAWIIGNFQDE---- 72 (131)
T ss_dssp -------------CCSSCCCSSSSCCSSTTS---CS--STT------HHHHHHGGGCSCHHHHHHHHHHHGGGCSH----
T ss_pred ccccccHHHHHHHhcCCCHHHHHHHHHHHHH---hC--chH------HHHHHHHHcCCCHHHHHHHHHHHHhcCCH----
Confidence 3445556678888888887667766655532 22 211 25566777789999999999999988532
Q ss_pred hhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 104 SAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 104 ~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
+.+ ..-++.|. +....=|.+|+..|-.+.. +...+.+...+.|+...||..|+.||.
T Consensus 73 --~a~----~~L~~~L~-d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 73 --RAV----EPLIKLLE-DDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp --HHH----HHHHHHHH-HCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred --HHH----HHHHHHHc-CCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 122 22233333 3455567788888877652 456777888899999999999999875
No 59
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=95.90 E-value=0.42 Score=40.60 Aligned_cols=151 Identities=16% Similarity=0.080 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhc-CCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcch
Q psy11494 26 TDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHV-DVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFS 104 (197)
Q Consensus 26 ~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~-~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~ 104 (197)
.++...-+.+|++..|..=|..++.+|..++.- +.......+.++-.-+-+++.++|..+...|.+|+|.|.. |..++
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe-~vpL~ 109 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVK-DVPMG 109 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHT-TCCBC
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc-CCCCC
Confidence 344667899999999988899999999999954 2222344455555555566778999999999999999964 56777
Q ss_pred hhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHh
Q psy11494 105 AEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 105 ~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
.+-... +-.|+--+-.++++..+.=|+=+|--| -|+..++.+ .+.|...+..++..+-.+|.. +.+.+-.
T Consensus 110 ~~~y~K-l~~aL~dlik~~~~il~~eaae~Lgkl---kv~~~~~~V---~~~l~sLl~Skd~~vK~agl~---~L~eia~ 179 (265)
T 3b2a_A 110 SKTFLK-AAKTLVSLLESPDDMMRIETIDVLSKL---QPLEDSKLV---RTYINELVVSPDLYTKVAGFC---LFLNMLN 179 (265)
T ss_dssp HHHHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHC---CBSCCCHHH---HHHHHHHHTCSSHHHHHHHHH---HHHHHGG
T ss_pred HHHHHH-HHHHHHHHhcCCCchHHHHHHHHhCcC---CcccchHHH---HHHHHHHHhCCChhHHHHHHH---HHHHhhc
Confidence 664444 445666666678888777777666666 566655554 445566667788777766554 4455555
Q ss_pred hcc
Q psy11494 185 QRE 187 (197)
Q Consensus 185 ~Re 187 (197)
.++
T Consensus 180 ~S~ 182 (265)
T 3b2a_A 180 SSA 182 (265)
T ss_dssp GCS
T ss_pred ccC
Confidence 443
No 60
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=95.88 E-value=0.19 Score=49.00 Aligned_cols=154 Identities=17% Similarity=0.107 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhcc
Q psy11494 23 TAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQIS 100 (197)
Q Consensus 23 ~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~g 100 (197)
..|-+.+...|...+.+++..+++.++-|+-++.....+-.+.-+ .-+..-|-.++.+.|..+-+.|.+++|+.+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~- 320 (810)
T 3now_A 242 ARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK- 320 (810)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-
Confidence 345555556667788899999999999999999866533322222 13555666677788999999999999997653
Q ss_pred CcchhhhHH-HHHHHHHhhhcCCCcchhhHHHHHHHHHHHhh---CCc-hhH--hhhhHHHHHHHhhhcCC--cHHHHHH
Q psy11494 101 GTFSAEYAD-FEMKKAIEWLGGDRVEGKRHAAVLVLKELAVT---VPT-IFY--QHVQAFFDFVFSAVRDP--KPEIRLH 171 (197)
Q Consensus 101 G~~~~~~Ve-~ev~~AlewL~~~r~e~rR~AAvLvLrELa~n---aPt-~~~--~~v~~~~d~Iw~aLrDp--k~~iRe~ 171 (197)
....++|- .-+ ..|..|-.+..+.-|.-|++.|.-++.. -|+ -.+ .-+..+.+.+-..|.+| +..+|+.
T Consensus 321 -~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~ 398 (810)
T 3now_A 321 -KDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRW 398 (810)
T ss_dssp -HHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHH
T ss_pred -cHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 44555443 334 2222222344455566777788888742 122 233 22556666666777777 7889999
Q ss_pred HHHHHHHH
Q psy11494 172 AVKAIRAA 179 (197)
Q Consensus 172 Aa~aL~~c 179 (197)
|+++|.++
T Consensus 399 AveaLayL 406 (810)
T 3now_A 399 AADGLAYL 406 (810)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999865
No 61
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.56 E-value=0.076 Score=50.08 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=83.4
Q ss_pred HHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHH---HHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh-hH
Q psy11494 33 IFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR---FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE-YA 108 (197)
Q Consensus 33 I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~r---f~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~-~V 108 (197)
+.+.++|+|.++|.++..||..|+. + ......+-+ ....|..+|...|.+|...|+++|+.|+..+|.-..+ ++
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~-~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~ 116 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQ-D-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLY 116 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTT-S-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHc-C-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence 4456789999999999999999984 2 111111111 2344677788899999999999999999998864333 33
Q ss_pred HHHHHHHH--------hhhcC-------CCcchhhHH------HHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCC--
Q psy11494 109 DFEMKKAI--------EWLGG-------DRVEGKRHA------AVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDP-- 164 (197)
Q Consensus 109 e~ev~~Al--------ewL~~-------~r~e~rR~A------AvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDp-- 164 (197)
...|=..| +-+.. ...+.+++- .+-.|.-|+..+...+.... ...+..+...|.+.
T Consensus 117 ~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~ 196 (684)
T 4gmo_A 117 RLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADI 196 (684)
T ss_dssp HTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCC
T ss_pred HcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCC
Confidence 33222222 11111 111222221 33455667776665442221 23344444444332
Q ss_pred -cHHHHHHHHHHHHH
Q psy11494 165 -KPEIRLHAVKAIRA 178 (197)
Q Consensus 165 -k~~iRe~Aa~aL~~ 178 (197)
...|+.+|+.+|..
T Consensus 197 ~~~~v~~~a~~~L~~ 211 (684)
T 4gmo_A 197 APQDIYEEAISCLTT 211 (684)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 35688888887764
No 62
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=95.47 E-value=0.34 Score=42.22 Aligned_cols=150 Identities=7% Similarity=-0.058 Sum_probs=90.0
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHH--HHHHHhhh-CCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR--FANYLRNL-LPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~r--f~~yL~~~-l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
-..+.+++++++..-+..++-|+..|-..+..+....+.. -...|-.+ +.+.|.++.+.|+.+++.|+......-..
T Consensus 129 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~ 208 (354)
T 3nmw_A 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 208 (354)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHH
Confidence 4556677777776667677777766653221121222211 12233333 45678999999999999998743122234
Q ss_pred hHH--HHHHHHHhhhcCCCcc---hhhHHHHHHHHHHHhh---CCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 107 YAD--FEMKKAIEWLGGDRVE---GKRHAAVLVLKELAVT---VPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 107 ~Ve--~ev~~AlewL~~~r~e---~rR~AAvLvLrELa~n---aPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
++. .-+..-++-|...... .-+-.|+..|+-|+.. .|...-.-+ ...+..+-..|++++..+++.|+.+|.
T Consensus 209 i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 288 (354)
T 3nmw_A 209 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 288 (354)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHH
Confidence 442 2344444555543322 2466788899999862 333221111 235677778889999999999999998
Q ss_pred HH
Q psy11494 178 AA 179 (197)
Q Consensus 178 ~c 179 (197)
.+
T Consensus 289 nL 290 (354)
T 3nmw_A 289 NL 290 (354)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 63
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.15 Score=42.16 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=89.2
Q ss_pred HHHHhhCCchhHHHHHHHHHHHHhhcCCCc--chhhhHHHHH-----HHhhhCCCCChhHHHHHHHHHHHhhhccCcchh
Q psy11494 33 IFEMVSANDVNEKKSGIIAIVCLLHVDVGN--VNSRNIRFAN-----YLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSA 105 (197)
Q Consensus 33 I~~L~~s~d~~eklggI~aId~Li~~~~~~--~~~~~~rf~~-----yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~ 105 (197)
+-..+.-+...=...|+.++..++..-+.. .......++. .+.+++..+...+...|-.++=.++...+. .
T Consensus 60 lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~ 137 (278)
T 4ffb_C 60 FAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--I 137 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--S
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--H
Confidence 334444555555667888888887653222 1222222222 223455666677777777777666543221 2
Q ss_pred hhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhC-Cchh--HhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 106 EYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTV-PTIF--YQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 106 ~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~na-Pt~~--~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
+.+-.. .+..+ ..++..-|.+++..|.++..+- +..+ -+.++.+++.+...+-|++..||++|..++-.+...
T Consensus 138 ~~~~e~---l~~~l-~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 138 TQSVEL---VIPFF-EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHH---HGGGG-GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHH---HHHHH-hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 222222 22333 3467777888888888888873 3333 234677888899999999999999999999887766
Q ss_pred Hh
Q psy11494 183 TA 184 (197)
Q Consensus 183 i~ 184 (197)
+-
T Consensus 214 ~G 215 (278)
T 4ffb_C 214 TG 215 (278)
T ss_dssp --
T ss_pred hC
Confidence 53
No 64
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.28 E-value=0.39 Score=45.77 Aligned_cols=144 Identities=9% Similarity=0.083 Sum_probs=97.6
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh---HHHHHHHhhhCC-CCChhHHHHHHHHHHHhhhccCcchh
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN---IRFANYLRNLLP-SNDIGVMRYAAKTVGKLAQISGTFSA 105 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~---~rf~~yL~~~l~-~~D~~vm~~AA~~lG~L~~~gG~~~~ 105 (197)
-..+..+++++|..-|..++.+|..|...+ +....+ ......|-.+|. +.|..+-..|+++|++|+..... ..
T Consensus 152 ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~--~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~-~~ 228 (780)
T 2z6g_A 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG-LL 228 (780)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTSH--HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH-HH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhCCC--hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-HH
Confidence 455777788888888888888888876432 111111 123444444444 45999999999999998875221 22
Q ss_pred hhHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 106 EYADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 106 ~~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
.+++. -|..-++.|+.+ .+.-|..|+..|..|+...+..--..+ ...++.+-..|.+++..+|+.|+.+|.
T Consensus 229 ~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~ 301 (780)
T 2z6g_A 229 AIFKSGGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 301 (780)
T ss_dssp HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 23332 355556666654 566788999999999998766443332 467778888889999999999888876
No 65
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=95.24 E-value=0.54 Score=43.81 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhhCCchh----------HHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCC-------
Q psy11494 18 TVEEVTAFTDAFNHHIFEMVSANDVN----------EKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPS------- 80 (197)
Q Consensus 18 s~e~~~~~~~~l~~~I~~L~~s~d~~----------eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~------- 80 (197)
.++.|..+...+.+.+..++.+++.. +-.+=+..|+.|-.+...+.......+..+|..+++.
T Consensus 218 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks 297 (621)
T 2vgl_A 218 NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKS 297 (621)
T ss_dssp CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccc
Confidence 34445556666666777776554321 3466677777776554333333344566666666521
Q ss_pred -----C--ChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHH
Q psy11494 81 -----N--DIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAF 153 (197)
Q Consensus 81 -----~--D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~ 153 (197)
. ...|+-.|++++-++.. ..+++..-++.-...|. +...+-||.|+-.|..++...|+ ...+...
T Consensus 298 ~~l~~~n~~~aVl~ea~~~i~~l~~-----~~~~~~~~~~~L~~~L~-~~~~niry~aL~~l~~l~~~~~~--~~~~~~~ 369 (621)
T 2vgl_A 298 KKVQHSNAKNAVLFEAISLIIHHDS-----EPNLLVRACNQLGQFLQ-HRETNLRYLALESMCTLASSEFS--HEAVKTH 369 (621)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHSS-CSCHHHHHHHHHHHHHHTTCTTT--HHHHHTT
T ss_pred ccccccchHHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHhccCc--HHHHHHH
Confidence 1 33777788888877641 34555555555555554 45668899999999999999884 2334555
Q ss_pred HHHHHhhhc-CCcHHHHHHHHHHHHH
Q psy11494 154 FDFVFSAVR-DPKPEIRLHAVKAIRA 178 (197)
Q Consensus 154 ~d~Iw~aLr-Dpk~~iRe~Aa~aL~~ 178 (197)
.+.|...|+ |+...||..|.+.|..
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~ 395 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLYA 395 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHHH
Confidence 666677788 9999999998887653
No 66
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.08 E-value=0.78 Score=40.39 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=100.5
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 28 AFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 28 ~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
.++-.+..++.|+|...|+=+-+++..+.+.. .+ ..=-.|.|.+=+.++++-+--.|=+++|++..+. ..+.
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e----~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~---m~~~ 139 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-ED----VIIVTSSLTKDMTGKEDSYRGPAVRALCQITDST---MLQA 139 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SC----GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT---THHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HH----HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH---HHHH
Confidence 45556677999999999999999998887662 33 2234556666667777888888999999998753 5777
Q ss_pred HHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 108 ADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 108 Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
++..+++|+. ++...=|=+|++-.--|...+|.++. .|++.+-.++.|+.+.|--.|..+|..+
T Consensus 140 l~~~lk~~L~----d~~pyVRk~A~l~~~kL~~~~pe~v~----~~~~~l~~ll~d~n~~V~~~Al~lL~ei 203 (355)
T 3tjz_B 140 IERYMKQAIV----DKVPSVSSSALVSSLHLLKCSFDVVK----RWVNEAQEAASSDNIMVQYHALGLLYHV 203 (355)
T ss_dssp HHHHHHHHHT----CSSHHHHHHHHHHHHHHTTTCHHHHH----TTHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC----CCCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 8888998883 45555555666666678888898764 4677777788999998887666666543
No 67
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.85 E-value=1.3 Score=36.38 Aligned_cols=144 Identities=9% Similarity=0.054 Sum_probs=92.9
Q ss_pred HHHHhhCCchhHHHHHHHHHHHHhhcCCC-----cchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcc--hh
Q psy11494 33 IFEMVSANDVNEKKSGIIAIVCLLHVDVG-----NVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTF--SA 105 (197)
Q Consensus 33 I~~L~~s~d~~eklggI~aId~Li~~~~~-----~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~--~~ 105 (197)
+.+-+.|.+=.+|+-|+..+..+++-... +....+..+...+++.+...+..|...|..++..++...|.- ..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 34567788888999999999888754211 112224445566778887788999999999999998764432 12
Q ss_pred h----hHHHHHHHHHhh-hcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 106 E----YADFEMKKAIEW-LGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 106 ~----~Ve~ev~~Alew-L~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
. ++..-+..-+|= |. +.+..-|-+|.-.|-.++.... ....+++.|..++.++.+.+|..+...|..|+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~-~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLT-SSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 2 333333333432 33 3333344455555555554422 12456788889999999999999999999988
Q ss_pred HH
Q psy11494 181 VV 182 (197)
Q Consensus 181 ~i 182 (197)
.-
T Consensus 168 ~~ 169 (278)
T 4ffb_C 168 AA 169 (278)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 68
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=94.84 E-value=0.084 Score=50.30 Aligned_cols=135 Identities=12% Similarity=0.144 Sum_probs=89.3
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCC-----cchhhhHHHHHHHhhhC------C-CCC---hhHHHHHHHHH
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVG-----NVNSRNIRFANYLRNLL------P-SND---IGVMRYAAKTV 93 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~-----~~~~~~~rf~~yL~~~l------~-~~D---~~vm~~AA~~l 93 (197)
++..+..-+=++.=..|=|+.+|+..++...+. +..++ -++--|-.++ . ..| .+|-+.||++|
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~--DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtL 252 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS--KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLL 252 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT--THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH--HHHHHHHHHHHhccccccccCeeeeehHHHHHHHH
Confidence 444444445566667788999999999876531 11221 2222222221 1 134 56789999999
Q ss_pred HHhhhc-cCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHH
Q psy11494 94 GKLAQI-SGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHA 172 (197)
Q Consensus 94 G~L~~~-gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~A 172 (197)
|.+ .+ ++. -+.+..-+ .- .....+.-||+|.|-||.+ .-+...++.+++.+-.+|.|+..-||..|
T Consensus 253 GaL-~hLp~e--~~IL~qLV----~~-l~~~~WEVRHGGLLGLKYL-----~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 253 SRI-YPLIGP--NDIIEQLV----GF-LDSGDWQVQFSGLIALGYL-----KEFVEDKDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp HHH-TTTSCS--CCHHHHHT----TG-GGCSCHHHHHHHHHHHHHT-----GGGCCCHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHH-HhCChh--HHHHHHHH----hh-cCCCCeeehhhhHHHHHHH-----HHHHHHHHHHHHHHHhhcCCcccHHHHHH
Confidence 999 54 332 23333333 22 2456789999999999999 33333389999999999999999999999
Q ss_pred HHHHHH
Q psy11494 173 VKAIRA 178 (197)
Q Consensus 173 a~aL~~ 178 (197)
|++|--
T Consensus 320 AetLiP 325 (800)
T 3oc3_A 320 AELLCH 325 (800)
T ss_dssp HHHHTT
T ss_pred HHHhhh
Confidence 998853
No 69
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=94.74 E-value=0.52 Score=44.90 Aligned_cols=111 Identities=13% Similarity=-0.005 Sum_probs=67.1
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
-..+.+++++++..-+..++.++..|..... +....+ ......|-.+|.+++..+...|+.++..|+.........+
T Consensus 236 I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i 314 (780)
T 2z6g_A 236 IPALVNMLGSPVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 314 (780)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 3457777777777667777777777764431 211111 1233355566667889999999999998885211111122
Q ss_pred HHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhh
Q psy11494 108 ADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVT 141 (197)
Q Consensus 108 Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~n 141 (197)
++. -+..-++.|+....+.++.+++.+|..|+..
T Consensus 315 ~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 315 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence 221 1334445566666677788888888888753
No 70
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=94.72 E-value=0.05 Score=54.13 Aligned_cols=110 Identities=15% Similarity=0.062 Sum_probs=80.8
Q ss_pred HHHHHHHhhhCCCCC-hhHHHHHHHHHHHhhhccCc--chhhhHHHHHHHHHh--hhc-----CCCcchhhHHHHHHHHH
Q psy11494 68 IRFANYLRNLLPSND-IGVMRYAAKTVGKLAQISGT--FSAEYADFEMKKAIE--WLG-----GDRVEGKRHAAVLVLKE 137 (197)
Q Consensus 68 ~rf~~yL~~~l~~~D-~~vm~~AA~~lG~L~~~gG~--~~~~~Ve~ev~~Ale--wL~-----~~r~e~rR~AAvLvLrE 137 (197)
.+.-+.+-.+|..+. .+|=+.||.||+-|++.+|. ...++++.-.+++.. -+. ......+||||||-|-.
T Consensus 842 ~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~A 921 (997)
T 1vsy_5 842 NKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGA 921 (997)
T ss_dssp HHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHH
Confidence 456666667777778 88999999999999887523 223444422222111 000 01123699999999999
Q ss_pred HHhhCCchh--HhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 138 LAVTVPTIF--YQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 138 La~naPt~~--~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
+....|..+ =+++|+++..+=....||.+ |+.++-++|+.
T Consensus 922 lV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlse 963 (997)
T 1vsy_5 922 IISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISE 963 (997)
T ss_dssp HHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHH
T ss_pred HHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHH
Confidence 999999998 78999999999888999866 99999999886
No 71
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=94.57 E-value=0.64 Score=45.27 Aligned_cols=148 Identities=14% Similarity=0.051 Sum_probs=105.3
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhH-HHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCc------c
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNI-RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGT------F 103 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~-rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~------~ 103 (197)
..+..|++|++...+..++.++...-+- .+....+. -....|..++++.|..+-..|+.+|.+++..+++ +
T Consensus 293 ~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~ 370 (810)
T 3now_A 293 QMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPF 370 (810)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccch
Confidence 4577888888888888888887664322 12222222 2348888899988888999999999999875542 2
Q ss_pred hhhhHHHHHHHHHhhhcCCC-cchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 104 SAEYADFEMKKAIEWLGGDR-VEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 104 ~~~~Ve~ev~~AlewL~~~r-~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
...-++.-++....||..+. ...-|--||.-|.+|+...+.--.-.. ..++..+...|++++..+...|+.+|..+-
T Consensus 371 ~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt 449 (810)
T 3now_A 371 GDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLC 449 (810)
T ss_dssp TTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHc
Confidence 22346777889999998762 444566788888999887654332222 467777888888889999999998888653
No 72
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=94.40 E-value=1.1 Score=40.64 Aligned_cols=150 Identities=7% Similarity=-0.049 Sum_probs=86.6
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHH--HHHHHhhh-CCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR--FANYLRNL-LPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~r--f~~yL~~~-l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
..+.+++++++..-+.-++.||..|-..+..+....+.. -...|-.+ +.+.|..+.+.|+.+++.|+..+......+
T Consensus 246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 445566666665555555555555532111111122211 12233443 566799999999999999998432223444
Q ss_pred HH--HHHHHHHhhhcCCCcc---hhhHHHHHHHHHHHh---hCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 108 AD--FEMKKAIEWLGGDRVE---GKRHAAVLVLKELAV---TVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 108 Ve--~ev~~AlewL~~~r~e---~rR~AAvLvLrELa~---naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
+. .-+..-++-|...... .-+-.|+.+|+-|+. ..|...-..+ ...+..+-..|++++..+++.|+.||..
T Consensus 326 ~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~n 405 (458)
T 3nmz_A 326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 405 (458)
T ss_dssp HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 42 2233444555543322 246668889999987 2333211111 2456677788999999999999999986
Q ss_pred HH
Q psy11494 179 AL 180 (197)
Q Consensus 179 cL 180 (197)
+-
T Consensus 406 La 407 (458)
T 3nmz_A 406 LS 407 (458)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 73
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.06 E-value=1.8 Score=42.25 Aligned_cols=148 Identities=12% Similarity=0.069 Sum_probs=90.8
Q ss_pred HHHHHHHHHhhC--CchhHHHHHHHHHHHHhhcCCCcch-hhhHHHHHHHhhhCC---CCChhHHH--HHHHHHHHhhhc
Q psy11494 28 AFNHHIFEMVSA--NDVNEKKSGIIAIVCLLHVDVGNVN-SRNIRFANYLRNLLP---SNDIGVMR--YAAKTVGKLAQI 99 (197)
Q Consensus 28 ~l~~~I~~L~~s--~d~~eklggI~aId~Li~~~~~~~~-~~~~rf~~yL~~~l~---~~D~~vm~--~AA~~lG~L~~~ 99 (197)
.+.+.+.+.+++ .+-.++=+++.|+.++.+.-.++.. ......-.+|-.+.. ++|...+. .+.+++|+.+.-
T Consensus 451 ~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~ 530 (1049)
T 3m1i_C 451 IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRF 530 (1049)
T ss_dssp HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHH
Confidence 344445555543 5557788999999988754222211 113334444443222 13444444 377999988753
Q ss_pred cCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhH--------hhhhHHHHHHHhhhcCCcHHHHHH
Q psy11494 100 SGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFY--------QHVQAFFDFVFSAVRDPKPEIRLH 171 (197)
Q Consensus 100 gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~--------~~v~~~~d~Iw~aLrDpk~~iRe~ 171 (197)
=.. ..+++..-+..-++.|..+. ..=+.+|+.-|.-+++..+..+. +|++.+++.+...+.+.+..-...
T Consensus 531 ~~~-~~~~l~~vl~~ll~~l~~~~-~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~ 608 (1049)
T 3m1i_C 531 LKA-HWNFLRTVILKLFEFMHETH-EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1049)
T ss_dssp HHH-CHHHHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred HHh-HHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHH
Confidence 111 24577777777777776543 34456677777789999888776 999999999998888866554444
Q ss_pred HHHHHH
Q psy11494 172 AVKAIR 177 (197)
Q Consensus 172 Aa~aL~ 177 (197)
.-+|+.
T Consensus 609 ~~eai~ 614 (1049)
T 3m1i_C 609 FYKACG 614 (1049)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 74
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.86 E-value=0.54 Score=45.43 Aligned_cols=131 Identities=11% Similarity=0.012 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCC------CCChhHHHHHHHHHHHhhhccC----cchh-----hhHH
Q psy11494 45 KKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLP------SNDIGVMRYAAKTVGKLAQISG----TFSA-----EYAD 109 (197)
Q Consensus 45 klggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~------~~D~~vm~~AA~~lG~L~~~gG----~~~~-----~~Ve 109 (197)
+.+|...++.|....+.. -+.-+..++...+. +.|...-+.|=.++|-++..|. .... ++..
T Consensus 378 R~aa~~~L~~l~~~~~~~---v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 378 RRACTDFLKELKEKNEVL---VTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (960)
T ss_dssp HHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred HHHHHHHHHHHHHHcchh---HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH
Confidence 567777888777654322 23344455544443 5677888888899999975432 1122 6666
Q ss_pred HHHHHHHhhhcCC--CcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 110 FEMKKAIEWLGGD--RVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 110 ~ev~~AlewL~~~--r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
+-++..+-.|+.. ....-|.+|+..|-.++..-| -.+...++..+...|.|+...||..|+.||...+.
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 6556666666643 255569999999999988753 24688888899999999999999999999996543
No 75
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=93.59 E-value=0.54 Score=39.04 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcc
Q psy11494 24 AFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTF 103 (197)
Q Consensus 24 ~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~ 103 (197)
+....+...|+.|..|+|..||+.++.=|..+ +.+....++=|..-|..+|-..|.-|-..|-++||++|.....+
T Consensus 140 ~l~~~v~rdi~smltskd~~Dkl~aLnFi~al----Gen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npkl 215 (253)
T 2db0_A 140 MLMASIVRDFMSMLSSKNREDKLTALNFIEAM----GENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKL 215 (253)
T ss_dssp HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTC----CTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----hccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHH
Confidence 34556777899999999999998876655433 22334445557777778888889888888999999999864333
Q ss_pred -------------hhhhHHHHHHHHHhhh
Q psy11494 104 -------------SAEYADFEMKKAIEWL 119 (197)
Q Consensus 104 -------------~~~~Ve~ev~~AlewL 119 (197)
+++.|.+-|+.++.-|
T Consensus 216 Rkii~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 216 RKVVIKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp HHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 6788888888887654
No 76
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=93.53 E-value=0.014 Score=42.94 Aligned_cols=90 Identities=11% Similarity=0.076 Sum_probs=57.9
Q ss_pred HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhH
Q psy11494 68 IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFY 147 (197)
Q Consensus 68 ~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~ 147 (197)
..+...|...|.+.|..+-..|++++|++..+ . +..-++.|.. ....-|.+|+..|-.+..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~----~-------~~~L~~~L~d-~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE----A-------FEPLLESLSN-EDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST----T-------HHHHHHGGGC-SCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch----H-------HHHHHHHHcC-CCHHHHHHHHHHHHhcCC-------
Confidence 34566677788888999999999999976432 1 2334455654 556667777777665542
Q ss_pred hhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 148 QHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 148 ~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
+..++.+...|.|++..||..|+.+|...
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34567777888999999999999999753
No 77
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=93.25 E-value=0.39 Score=46.68 Aligned_cols=138 Identities=15% Similarity=0.268 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhhcCCC---cchhhhHH---HHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH------
Q psy11494 44 EKKSGIIAIVCLLHVDVG---NVNSRNIR---FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE------ 111 (197)
Q Consensus 44 eklggI~aId~Li~~~~~---~~~~~~~r---f~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e------ 111 (197)
+++-++.|+--|...+.. +...++.+ .-..|..+|-+.+..+-+.|++++..|+..+.....+|.+.+
T Consensus 575 ~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~ 654 (778)
T 3opb_A 575 DNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLR 654 (778)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhc
Confidence 488888888888776521 22233333 567777888888888999999999999986544445665433
Q ss_pred -HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh--hHHHHHHHhhhcC--CcHHHHHHHHHHHHHHHHH
Q psy11494 112 -MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV--QAFFDFVFSAVRD--PKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 112 -v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v--~~~~d~Iw~aLrD--pk~~iRe~Aa~aL~~cL~i 182 (197)
++.-+..++.+..+. |-||+..|--++...|.+.-.-+ ...++.+-..+.| ++..+|..++.++......
T Consensus 655 rL~lLV~Ll~s~D~~~-r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 655 NFNILVKLLQLSDVES-QRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHGGGCSCHHH-HHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHcCCCHHH-HHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 445556666654444 55555887777766666544444 3578888888889 8999999999999877753
No 78
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.72 E-value=1.1 Score=44.54 Aligned_cols=126 Identities=19% Similarity=0.205 Sum_probs=85.8
Q ss_pred HhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHH
Q psy11494 36 MVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKA 115 (197)
Q Consensus 36 L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~A 115 (197)
|..+.|..=|.|+++++.+-. .+.++ ...+.++ |..+....+..|-+.|.-.+|.++.- .. + -+.+.
T Consensus 550 L~~~~dp~vRygaa~alglAy-aGTGn-~~aIq~L---L~~~~~d~~d~VRraAViaLGlI~~g-~~---e----~v~rl 616 (963)
T 4ady_A 550 MLASDESLLRYGGAFTIALAY-AGTGN-NSAVKRL---LHVAVSDSNDDVRRAAVIALGFVLLR-DY---T----TVPRI 616 (963)
T ss_dssp HHHCSCHHHHHHHHHHHHHHT-TTSCC-HHHHHHH---HHHHHHCSCHHHHHHHHHHHHHHTSS-SC---S----SHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHh-cCCCC-HHHHHHH---HHHhccCCcHHHHHHHHHHHHhhccC-CH---H----HHHHH
Confidence 335677777888887775442 12223 2223333 33444455666778888999977532 11 1 24556
Q ss_pred HhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 116 IEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 116 lewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
++-|.......-|++|++-|=-+.--.|. +.+++.+.....|+...||..|+.||..++
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 66666667788899999988777765664 677888889999999999999999999766
No 79
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=92.59 E-value=5.9 Score=37.02 Aligned_cols=148 Identities=10% Similarity=-0.006 Sum_probs=95.4
Q ss_pred HHHHHhh-CCchhHHHHHHHHHHHHhhcCCC--cchh-hh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchh
Q psy11494 32 HIFEMVS-ANDVNEKKSGIIAIVCLLHVDVG--NVNS-RN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSA 105 (197)
Q Consensus 32 ~I~~L~~-s~d~~eklggI~aId~Li~~~~~--~~~~-~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~ 105 (197)
.+..+++ +.+..=+-.++-||--|-..... .... .+ ..-...|..+|.++|..+.+.|+++|+.|+..+.. .
T Consensus 312 ~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~--~ 389 (584)
T 3l6x_A 312 IYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN--K 389 (584)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC--H
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH--H
Confidence 3455664 43433344666666666422110 0001 11 12345567778889999999999999999986543 3
Q ss_pred hhHHH-HHHHHHhhhcCCC-------cchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCC--cHHHHHHHHH
Q psy11494 106 EYADF-EMKKAIEWLGGDR-------VEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDP--KPEIRLHAVK 174 (197)
Q Consensus 106 ~~Ve~-ev~~AlewL~~~r-------~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDp--k~~iRe~Aa~ 174 (197)
+.++. =|.+-++.|.... .+.-..+|+..|.+|+...|.-.-..+ ...++.++..+++. +..+.+.|+.
T Consensus 390 ~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~ 469 (584)
T 3l6x_A 390 ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAAL 469 (584)
T ss_dssp HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHH
Confidence 44443 3555556665432 345577899999999876654332222 36788899999986 8999999999
Q ss_pred HHHHHHH
Q psy11494 175 AIRAALV 181 (197)
Q Consensus 175 aL~~cL~ 181 (197)
+|+....
T Consensus 470 vL~nl~~ 476 (584)
T 3l6x_A 470 VLQTIWG 476 (584)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9997763
No 80
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=92.03 E-value=0.32 Score=48.31 Aligned_cols=113 Identities=11% Similarity=0.144 Sum_probs=75.2
Q ss_pred HHHHHHHhh-hCCC-------CCh-hHHHH-HHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHH
Q psy11494 68 IRFANYLRN-LLPS-------NDI-GVMRY-AAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKE 137 (197)
Q Consensus 68 ~rf~~yL~~-~l~~-------~D~-~vm~~-AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrE 137 (197)
.-+..|+.. ++|. +|. ++... |..++..|+. ..+..+.++.=++...+-...+.++ .|++..-+|+-
T Consensus 751 ~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~--~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~ 827 (997)
T 1vsy_5 751 VLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGY--MPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQH 827 (997)
T ss_dssp HHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSS--SCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHH
Confidence 345555554 4541 333 67777 6677777753 3556666655444443334445788 99999888765
Q ss_pred HHh-hCCchhHhhhhHHHHHHHhhhcCCc-HHHHHHHHHHHHHHHHHH
Q psy11494 138 LAV-TVPTIFYQHVQAFFDFVFSAVRDPK-PEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 138 La~-naPt~~~~~v~~~~d~Iw~aLrDpk-~~iRe~Aa~aL~~cL~ii 183 (197)
+.- |...+--.....+++.+...|.|+. ..|||.|+.+|+..+.-.
T Consensus 828 ~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 828 FLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 543 3444444445789999999999999 999999999998665443
No 81
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=91.44 E-value=1.9 Score=39.02 Aligned_cols=107 Identities=9% Similarity=0.071 Sum_probs=70.2
Q ss_pred HHhhhCCCCCh----hHHHHHHHHHHHhhhc--cCcch-hhhHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCc
Q psy11494 73 YLRNLLPSNDI----GVMRYAAKTVGKLAQI--SGTFS-AEYADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT 144 (197)
Q Consensus 73 yL~~~l~~~D~----~vm~~AA~~lG~L~~~--gG~~~-~~~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt 144 (197)
.|-.+|.+.+. ++.+.|++++..|+.. |+... ..+++. -+..-++.|... ...-+-.|+..|..|+...|.
T Consensus 334 ~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~ 412 (458)
T 3nmz_A 334 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPK 412 (458)
T ss_dssp HHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHH
Confidence 34445554332 5899999999999863 33322 223332 255556666653 444566788889999865554
Q ss_pred hhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 145 IFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 145 ~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
..-.-+ ...++.+...|++++..+|+.|+.||+..+
T Consensus 413 ~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~ 449 (458)
T 3nmz_A 413 DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 449 (458)
T ss_dssp HHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 322222 356778888999999999999999999654
No 82
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=91.44 E-value=3.7 Score=38.40 Aligned_cols=148 Identities=13% Similarity=0.011 Sum_probs=86.1
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHH--HHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh-h
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR--FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE-Y 107 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~r--f~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~-~ 107 (197)
..+.+++.++|..-+..+..+|-.|.- ...+....+.. -...|-.+|.+.|..+-+.|+++|+.|+..-+.-..+ +
T Consensus 51 ~~LV~~L~s~~~~~q~~Aa~~L~~La~-~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I 129 (584)
T 3l6x_A 51 PEVIAMLGFRLDAVKSNAAAYLQHLCY-RNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129 (584)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHc-CChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 456778888888888888888866652 21222222222 2345666778899999999999999998731222222 3
Q ss_pred HHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCc---hhHhhhhHHHHHHHhh-------------hcCC-cHHHH
Q psy11494 108 ADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT---IFYQHVQAFFDFVFSA-------------VRDP-KPEIR 169 (197)
Q Consensus 108 Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt---~~~~~v~~~~d~Iw~a-------------LrDp-k~~iR 169 (197)
++. =|..-++.|.......-+-.|+..|..|+.+.+. ++-.-++.+...+-.. ++|+ ...|+
T Consensus 130 ~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~ 209 (584)
T 3l6x_A 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209 (584)
T ss_dssp HHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHH
T ss_pred HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHH
Confidence 332 2566667777543333344466777888875321 2222244444433110 2232 46788
Q ss_pred HHHHHHHHHH
Q psy11494 170 LHAVKAIRAA 179 (197)
Q Consensus 170 e~Aa~aL~~c 179 (197)
+.|+.+|+.+
T Consensus 210 ~nAa~~L~NL 219 (584)
T 3l6x_A 210 TNTAGCLRNV 219 (584)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777754
No 83
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=91.20 E-value=1.7 Score=37.79 Aligned_cols=109 Identities=9% Similarity=0.078 Sum_probs=71.3
Q ss_pred HHhhhCCCCC----hhHHHHHHHHHHHhhhc--cCcch-hhhHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCc
Q psy11494 73 YLRNLLPSND----IGVMRYAAKTVGKLAQI--SGTFS-AEYADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT 144 (197)
Q Consensus 73 yL~~~l~~~D----~~vm~~AA~~lG~L~~~--gG~~~-~~~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt 144 (197)
.|-.+|.+.+ .++.+.|++++..|+.. ++... ..+++. -+..-++-|+. ....-+-.|+..|..|+...|.
T Consensus 218 ~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~~ 296 (354)
T 3nmw_A 218 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPK 296 (354)
T ss_dssp HHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC-CChHHHHHHHHHHHHHhCCCHH
Confidence 3445555433 26899999999999862 32222 223332 35566667765 3444566788899999865544
Q ss_pred hhHhh-hhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 145 IFYQH-VQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 145 ~~~~~-v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
....- -...++.+...|++++..+|+.|+.||+.++.-
T Consensus 297 ~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 297 DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 32221 235677788889999999999999999976653
No 84
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=91.03 E-value=1.2 Score=36.68 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=64.5
Q ss_pred HHHHHHhhCCch--hHHHHHHHHHHHHhhcCCCcchhhhHH--HHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 31 HHIFEMVSANDV--NEKKSGIIAIVCLLHVDVGNVNSRNIR--FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 31 ~~I~~L~~s~d~--~eklggI~aId~Li~~~~~~~~~~~~r--f~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
..+.++++|+|. .-+..+..+|-.|-.-+ .+....+.. -...|-.+|.+.+.++-+.|+++|+.|+...-.-...
T Consensus 11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 11 ERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 356778888887 45566666665543211 122222221 2345556677889999999999999998631111223
Q ss_pred hHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhh
Q psy11494 107 YADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVT 141 (197)
Q Consensus 107 ~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~n 141 (197)
+++. =|..-++.|...+...-+-.|+-.|..|+..
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 4443 2555667776444444455566677778754
No 85
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=89.97 E-value=11 Score=35.98 Aligned_cols=149 Identities=13% Similarity=0.110 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhh-hHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCc
Q psy11494 24 AFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSR-NIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGT 102 (197)
Q Consensus 24 ~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~-~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~ 102 (197)
.-...+.+|+ -++.-..+|..++.++..|-.-...+.... +..+-+-|++= ..|.++++.+=++|-.+..+++.
T Consensus 21 etI~~L~~Rl---~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d--~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 21 ETIQKLCDRV---ASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTD--RSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHH---HHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSC--TTCHHHHHHHHHHHHHHHCCC--
T ss_pred hHHHHHHHHH---hhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcc--cccHHHHHHHHHHHHHHhCCCCc
Confidence 3444444444 457888899999999998853211221211 33333333332 47999999999999766655432
Q ss_pred c-----------------hhhhHH--HHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhh---HHHHHHHhh
Q psy11494 103 F-----------------SAEYAD--FEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQ---AFFDFVFSA 160 (197)
Q Consensus 103 ~-----------------~~~~Ve--~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~---~~~d~Iw~a 160 (197)
- +..|++ .-|.--++.|+ +.....|+.++-+|+-|+.+-|..+-..+- .=+..+-..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~-~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE-EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc-CccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 1 111222 12444456664 467889999999999999999997665543 567788899
Q ss_pred hcCCcHHHHHHHHHHHHH
Q psy11494 161 VRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 161 LrDpk~~iRe~Aa~aL~~ 178 (197)
|.|++..||..|...|.+
T Consensus 175 L~d~rE~iRneallLL~~ 192 (651)
T 3grl_A 175 LADSREVIRNDGVLLLQA 192 (651)
T ss_dssp GGCSSHHHHHHHHHHHHH
T ss_pred HhCchHHHHHHHHHHHHH
Confidence 999999999998877663
No 86
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=89.51 E-value=15 Score=34.95 Aligned_cols=162 Identities=10% Similarity=0.056 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCC-CChhHHHHHHHHHHHhh
Q psy11494 21 EVTAFTDAFNHHIFEMVS--ANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPS-NDIGVMRYAAKTVGKLA 97 (197)
Q Consensus 21 ~~~~~~~~l~~~I~~L~~--s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~-~D~~vm~~AA~~lG~L~ 97 (197)
.+..+...+-+.+..++. ..+....-....++..++..-+.+....+..+..++...... +...++...+..++...
T Consensus 676 ~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~ 755 (963)
T 2x19_B 676 PVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFA 755 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhC
Confidence 355566666655555542 223333334455666666443333344455666555444443 56778877777776443
Q ss_pred hcc--CcchhhhHHHHHHHHHhhhcCC--CcchhhHHHHHHHHHHHhhCCchhH--hh-hhHHHHHHHhhhcCCcHHHHH
Q psy11494 98 QIS--GTFSAEYADFEMKKAIEWLGGD--RVEGKRHAAVLVLKELAVTVPTIFY--QH-VQAFFDFVFSAVRDPKPEIRL 170 (197)
Q Consensus 98 ~~g--G~~~~~~Ve~ev~~AlewL~~~--r~e~rR~AAvLvLrELa~naPt~~~--~~-v~~~~d~Iw~aLrDpk~~iRe 170 (197)
..+ +....++++.-++..++.++.+ ....-+.+..-+|..+.++.|..++ +. +..+++.+-.+++++...+-.
T Consensus 756 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 835 (963)
T 2x19_B 756 HEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVK 835 (963)
T ss_dssp TCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHH
Confidence 321 1233445566677777776632 2234567888999999999998876 44 788898877789999999998
Q ss_pred HHHHHHHHHHHH
Q psy11494 171 HAVKAIRAALVV 182 (197)
Q Consensus 171 ~Aa~aL~~cL~i 182 (197)
++...+...+..
T Consensus 836 ~~l~~l~~l~~~ 847 (963)
T 2x19_B 836 ASCGFFTELLPR 847 (963)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHHHHHhc
Confidence 888888876654
No 87
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=89.18 E-value=1.2 Score=39.34 Aligned_cols=101 Identities=16% Similarity=0.079 Sum_probs=64.6
Q ss_pred CCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhh-hhHHHH
Q psy11494 78 LPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQH-VQAFFD 155 (197)
Q Consensus 78 l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~-v~~~~d 155 (197)
|.+.|.++-..|++++++|+.........+++.- |..-++.|.. ....-+..|+..|+-|+...|..-... -...++
T Consensus 11 L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~ 89 (457)
T 1xm9_A 11 LSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIR 89 (457)
T ss_dssp HHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred HCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Confidence 3467889999999999999864322233455432 5566667775 344557889999999998644321111 112344
Q ss_pred HHHhhhc-CCcHHHHHHHHHHHHHH
Q psy11494 156 FVFSAVR-DPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 156 ~Iw~aLr-Dpk~~iRe~Aa~aL~~c 179 (197)
.+-..|+ +++..+++.|+.+|..+
T Consensus 90 ~Lv~lL~~~~~~~~~~~a~~aL~nL 114 (457)
T 1xm9_A 90 EAVSLLRRTGNAEIQKQLTGLLWNL 114 (457)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 4445566 77888888888777643
No 88
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=89.13 E-value=1.2 Score=44.34 Aligned_cols=134 Identities=16% Similarity=0.198 Sum_probs=85.6
Q ss_pred HHHHHHhhCCchhH----HHHHHHHHHHHhhc---C-CCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCc
Q psy11494 31 HHIFEMVSANDVNE----KKSGIIAIVCLLHV---D-VGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGT 102 (197)
Q Consensus 31 ~~I~~L~~s~d~~e----klggI~aId~Li~~---~-~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~ 102 (197)
+.+++|++++.+.. +--+++|+..|+.- + .......+..+.++|...+...|.+-+..+=++||.+..+..
T Consensus 394 ~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~- 472 (1056)
T 1lsh_A 394 SYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNS- 472 (1056)
T ss_dssp HHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGG-
T ss_pred HHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhH-
Confidence 45677777655321 23578999888742 1 122344578899999999988899999999999999988631
Q ss_pred chhhhHHHHHHHHHhhhcC------CCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHH
Q psy11494 103 FSAEYADFEMKKAIEWLGG------DRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAI 176 (197)
Q Consensus 103 ~~~~~Ve~ev~~AlewL~~------~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL 176 (197)
++.....|.+ +....-|.+|+.-||.++.+-|..+...+-+++.+ ++-...||-+|...|
T Consensus 473 ---------l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il~~i~~n-----~~e~~EvRiaA~~~L 538 (1056)
T 1lsh_A 473 ---------IKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLN-----VAIKSELRIRSCIVF 538 (1056)
T ss_dssp ---------HHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHC-----TTSCHHHHHHHHHHH
T ss_pred ---------HHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHHHHHHhcC-----CCCChHHHHHHHHHH
Confidence 2222233322 11223467899999999876665444443333322 445777888877766
Q ss_pred HHH
Q psy11494 177 RAA 179 (197)
Q Consensus 177 ~~c 179 (197)
-.|
T Consensus 539 m~t 541 (1056)
T 1lsh_A 539 FES 541 (1056)
T ss_dssp HHT
T ss_pred HHH
Confidence 543
No 89
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=88.31 E-value=5.5 Score=39.48 Aligned_cols=141 Identities=13% Similarity=0.048 Sum_probs=96.3
Q ss_pred CchhHHHHHHHHHHHHhhcCCCc-chhhhHHHHHHHhhhCC---CCChhHHH--HHHHHHHHhhhccCcchhhhHHHHHH
Q psy11494 40 NDVNEKKSGIIAIVCLLHVDVGN-VNSRNIRFANYLRNLLP---SNDIGVMR--YAAKTVGKLAQISGTFSAEYADFEMK 113 (197)
Q Consensus 40 ~d~~eklggI~aId~Li~~~~~~-~~~~~~rf~~yL~~~l~---~~D~~vm~--~AA~~lG~L~~~gG~~~~~~Ve~ev~ 113 (197)
++=.++=+++.|+.++.+.-..+ ....+...-.+|-.++. ++|..++. .+++++|+.+.-= ....+|.+.-++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl-~~~~~~L~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFL-KAHWNFLRTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHH-HHCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHH-hccHHHHHHHHH
Confidence 45667779999999998653222 23445555555555543 34666543 4669999987631 113567788888
Q ss_pred HHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhH--------hhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 114 KAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFY--------QHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 114 ~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~--------~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
.-++.|..+ .+.=.-+||.-++-|+..++..+. +|+++++..+-..+-+-+..-+...-+|+...+.-
T Consensus 544 ~L~~~l~~~-~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 544 KLFEFMHET-HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHTTCS-CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcC-CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 888888543 233456788999999999888775 58999988888888777777777777777765544
No 90
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=88.27 E-value=2.6 Score=37.05 Aligned_cols=136 Identities=13% Similarity=0.084 Sum_probs=59.1
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhH
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYA 108 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~V 108 (197)
+...+-..+...++.=++.+++|+..|+... +..+.+|.+.+..++...|+-|+-.|-.++-.+....+.-...+|
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~----pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv 215 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCS----FDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMI 215 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC----HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhccC----HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHH
Confidence 3344555555555555666666666665433 223455666666666665655555444444444443221111122
Q ss_pred HHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 109 DFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 109 e~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
....+ ..-.-=++-|.+||-+++-.|..--..-..+++.|-..|++++..|-=.|+.++-
T Consensus 216 ~~l~~---------~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~ 275 (355)
T 3tjz_B 216 SKFTR---------HGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIV 275 (355)
T ss_dssp HHHHS---------SCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHT
T ss_pred HHHhc---------CCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 11100 0000134445566644443332211123455566666677777777766666554
No 91
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=86.32 E-value=14 Score=30.95 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=37.7
Q ss_pred HHHHHHHhhCC-----chhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhh
Q psy11494 133 LVLKELAVTVP-----TIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQ 185 (197)
Q Consensus 133 LvLrELa~naP-----t~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~ 185 (197)
++|+.++.+.+ .-....+..+=+.|..-+.....-||-.|.+.+..+..+-+.
T Consensus 120 ~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~ 177 (257)
T 3gs3_A 120 NGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSF 177 (257)
T ss_dssp HHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcC
Confidence 44555665544 345666777777777777777999999999999987655553
No 92
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=85.39 E-value=12 Score=35.64 Aligned_cols=109 Identities=6% Similarity=-0.028 Sum_probs=67.6
Q ss_pred hHHHHHHHhhhCCC-----CChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcC-CCcchhhHHHHHHHHHHHh
Q psy11494 67 NIRFANYLRNLLPS-----NDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGG-DRVEGKRHAAVLVLKELAV 140 (197)
Q Consensus 67 ~~rf~~yL~~~l~~-----~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~-~r~e~rR~AAvLvLrELa~ 140 (197)
+..+.+++...+.+ .|....+.|-.++|.++........+.++.-+. .+--|.. +....=|.+|+.+|-.++.
T Consensus 457 l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~ 535 (971)
T 2x1g_F 457 LEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCN 535 (971)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHH
Confidence 34445555554432 678888999999999876433222345554444 3333332 2345568899999998887
Q ss_pred hCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 141 TVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 141 naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
--..-. .|++.+++.|..+| | ..|+..|+.|+....
T Consensus 536 ~l~~~~-~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~ 571 (971)
T 2x1g_F 536 WLMENP-AYIPPAINLLVRGL-N--SSMSAQATLGLKELC 571 (971)
T ss_dssp HHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHH
T ss_pred HHhcCH-HHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHH
Confidence 633222 67888899988888 6 467888988888544
No 93
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=84.83 E-value=9.4 Score=36.55 Aligned_cols=137 Identities=16% Similarity=0.238 Sum_probs=88.3
Q ss_pred HhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHH
Q psy11494 36 MVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKA 115 (197)
Q Consensus 36 L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~A 115 (197)
...++.=+=+-||+++|.-|-++- . .+..+.+-+...|...|-.|-..||.+|=-++.+ +.+..-+...
T Consensus 271 ~l~~~~WEVRHGGLLGLKYL~DLL--~---~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p------~~l~~LL~iL 339 (800)
T 3oc3_A 271 FLDSGDWQVQFSGLIALGYLKEFV--E---DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFPIT------DSLDLVLEKC 339 (800)
T ss_dssp GGGCSCHHHHHHHHHHHHHTGGGC--C---CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCS------STHHHHHHHH
T ss_pred hcCCCCeeehhhhHHHHHHHHHHH--H---HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhcch------hhHHHHHHHH
Confidence 336666556779999999983332 2 1667777777788889999999999999877722 3345555555
Q ss_pred HhhhcC-CCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH-----HHHHHhh
Q psy11494 116 IEWLGG-DRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA-----ALVVTAQ 185 (197)
Q Consensus 116 lewL~~-~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~-----cL~ii~~ 185 (197)
-+-|.. +.--.---+-.-+|-.|....|.. ..-+.....+|.-+|++-..||.++..+|.. +|.++.|
T Consensus 340 Wd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~~~~LRLIFQ 413 (800)
T 3oc3_A 340 WKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSEESIDFLVAE 413 (800)
T ss_dssp HHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 555543 221111112223444454444321 1124778889999999999999999998765 4555544
No 94
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=84.51 E-value=4.6 Score=33.18 Aligned_cols=104 Identities=10% Similarity=0.040 Sum_probs=67.2
Q ss_pred hhhCCCCCh--hHHHHHHHHHHHhhhccCcchhhhHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCc-hhHhhh
Q psy11494 75 RNLLPSNDI--GVMRYAAKTVGKLAQISGTFSAEYADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT-IFYQHV 150 (197)
Q Consensus 75 ~~~l~~~D~--~vm~~AA~~lG~L~~~gG~~~~~~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt-~~~~~v 150 (197)
-..|.++|. ++-..|++++..|+.....-...+++. -|..-++.|.. ..+.-+..|+..|+-|+...|. -....-
T Consensus 14 V~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~ 92 (233)
T 3tt9_A 14 VSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNKLEVAE 92 (233)
T ss_dssp HHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 345667777 787889999999986432223344443 36666777776 4566677888999999986542 111111
Q ss_pred hHHHHHHHhhhc-CCcHHHHHHHHHHHHHH
Q psy11494 151 QAFFDFVFSAVR-DPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 151 ~~~~d~Iw~aLr-Dpk~~iRe~Aa~aL~~c 179 (197)
..-++.+-..|+ .++..+++.|+.||..+
T Consensus 93 ~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL 122 (233)
T 3tt9_A 93 LNGVPRLLQVLKQTRDLETKKQITGLLWNL 122 (233)
T ss_dssp TTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 234445555666 46888999998887754
No 95
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=82.59 E-value=28 Score=34.80 Aligned_cols=86 Identities=12% Similarity=0.167 Sum_probs=64.4
Q ss_pred CCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcC--------CCc---chhhHHHHHHHHHHHhhCCchhH
Q psy11494 79 PSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGG--------DRV---EGKRHAAVLVLKELAVTVPTIFY 147 (197)
Q Consensus 79 ~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~--------~r~---e~rR~AAvLvLrELa~naPt~~~ 147 (197)
+..|+.++..+-.++|.+..--. ...+++..-+..-+.-+.. .+. ..=|.+|+.-|+-|+..+|..+.
T Consensus 542 ~~~~p~l~~~~i~~l~~l~~~~~-~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~ 620 (1204)
T 3a6p_A 542 DTKDPLILSCVLTNVSALFPFVT-YRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL 620 (1204)
T ss_dssp CCSCHHHHHHHHHHHHHHGGGGG-TCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred CCCChHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45799999999999998876532 2356777777766666542 111 24567788888899999999999
Q ss_pred hhhhHHHHHHHhhhcCCc
Q psy11494 148 QHVQAFFDFVFSAVRDPK 165 (197)
Q Consensus 148 ~~v~~~~d~Iw~aLrDpk 165 (197)
+|++++...+-..+...+
T Consensus 621 p~~~~i~~~~~~~l~~~~ 638 (1204)
T 3a6p_A 621 PNFDMLYNHVKQLLSNEL 638 (1204)
T ss_dssp GGHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHhCcc
Confidence 999999999888886554
No 96
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=82.04 E-value=37 Score=33.69 Aligned_cols=126 Identities=17% Similarity=0.138 Sum_probs=90.3
Q ss_pred hCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHh
Q psy11494 38 SANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIE 117 (197)
Q Consensus 38 ~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~Ale 117 (197)
+.++..=|-++++||..+ .++..+ .+.| .+..++.+.|+.+-..|+.++|.+.. |+-..+.++ .|+
T Consensus 588 ~d~~d~VRraAViaLGlI-~~g~~e---~v~r---lv~~L~~~~d~~VR~gAalALGli~a--Gn~~~~aid-----~L~ 653 (963)
T 4ady_A 588 SDSNDDVRRAAVIALGFV-LLRDYT---TVPR---IVQLLSKSHNAHVRCGTAFALGIACA--GKGLQSAID-----VLD 653 (963)
T ss_dssp HCSCHHHHHHHHHHHHHH-TSSSCS---SHHH---HTTTGGGCSCHHHHHHHHHHHHHHTS--SSCCHHHHH-----HHH
T ss_pred cCCcHHHHHHHHHHHHhh-ccCCHH---HHHH---HHHHHHhcCCHHHHHHHHHHHHHhcc--CCCcHHHHH-----HHH
Confidence 334444577888888643 333222 2333 33445568899999999999999863 333344443 455
Q ss_pred hhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcC--CcHHHHHHHHHHHH
Q psy11494 118 WLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRD--PKPEIRLHAVKAIR 177 (197)
Q Consensus 118 wL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrD--pk~~iRe~Aa~aL~ 177 (197)
-|..|....=|.+|+.-|-.+....+....+.+.+++..+-.-+.| .....|-.|.-|..
T Consensus 654 ~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqG 715 (963)
T 4ady_A 654 PLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQG 715 (963)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 5567788888899999999999998888889999999998888866 56778888877765
No 97
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=75.32 E-value=35 Score=28.44 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=97.4
Q ss_pred HHHHHHHHhhhhCH-HH-HHHHH------------HHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHH
Q psy11494 6 GASMVRTELREVTV-EE-VTAFT------------DAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFA 71 (197)
Q Consensus 6 ~~~~v~~~~re~s~-e~-~~~~~------------~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~ 71 (197)
.++|+....++++. |+ |.... +++.....+|.+++.-.-|+-|+.+|..+ . . ....-
T Consensus 35 ~~~~~~~~~~~~~~~~~gf~~~~~~a~~~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~----~----~~~~L 105 (240)
T 3l9t_A 35 MKQYVARLEKDFSLIEHGFKEEEQRALTDYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S----K----DKEIL 105 (240)
T ss_dssp HHHHHHHHHHHHTC-----CHHHHHHHHHHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T----T----SHHHH
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c----C----cHHHH
Confidence 46777777777765 21 32222 12223344455555445566666666555 2 1 12344
Q ss_pred HHHhhhCC-CCChhHHHHHHHHHHHhhh-ccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhh
Q psy11494 72 NYLRNLLP-SNDIGVMRYAAKTVGKLAQ-ISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQH 149 (197)
Q Consensus 72 ~yL~~~l~-~~D~~vm~~AA~~lG~L~~-~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~ 149 (197)
..++..++ ...-.|-..++.++|.++. .+-.. -+..-.+|+..+....||.|....+- -+.. |. +-..
T Consensus 106 ~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-------~l~~~~~W~~d~n~~VRR~Ase~~rp-W~~~-~~-~k~d 175 (240)
T 3l9t_A 106 IFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-------ALPIIDEWLKSSNLHTRRAATEGLRI-WTNR-PY-FKEN 175 (240)
T ss_dssp HHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-------THHHHHHHHHCSSHHHHHHHHHHTCS-GGGS-TT-TTTC
T ss_pred HHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-------HHHHHHHHhcCCCHHHHHHHHHhhHH-Hhcc-ch-hhcC
Confidence 44555333 5567899999999999996 33221 23445689999999999998877653 3322 32 3344
Q ss_pred hhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 150 VQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 150 v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
...++..|=...-||+.-||.+-+-+|+..
T Consensus 176 p~~ll~iL~~L~~D~s~yVrKSVan~LrD~ 205 (240)
T 3l9t_A 176 PNEAIRRIADLKEDVSEYVRKSVGNALRDI 205 (240)
T ss_dssp HHHHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 566777788888999999999999998853
No 98
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=74.58 E-value=4.8 Score=37.70 Aligned_cols=70 Identities=9% Similarity=0.027 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchh-HhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 108 ADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIF-YQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 108 Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~-~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
-+..|..-++-|++. ...-|..|+..|.+|+.++.+.- ..+-+-+...|=..|.||+..||+.|+.||+.
T Consensus 32 ~~~~i~Pll~~L~S~-~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrn 102 (684)
T 4gmo_A 32 REDKILPVLKDLKSP-DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKV 102 (684)
T ss_dssp HHHTTHHHHHHHSSS-CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 344566777778764 45668889999999998654422 22223333445567999999999999999974
No 99
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=74.15 E-value=32 Score=27.45 Aligned_cols=129 Identities=9% Similarity=-0.077 Sum_probs=86.7
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCC-CCChhHHHHHHHHHHHhhhccCcchhhhHH
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLP-SNDIGVMRYAAKTVGKLAQISGTFSAEYAD 109 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~-~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve 109 (197)
.-+.+|.+++--.+++-|+.-+...-..- +. ....++...++ -++-.++-.-|+++|+++..- .+.+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~---~~----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~----~~~~- 125 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRF---SL----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH----LTEL- 125 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGC---CH----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS----GGGH-
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhC---CH----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC----hHHH-
Confidence 45667788877778888887776554221 11 22334555665 456677776668899887531 1111
Q ss_pred HHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 110 FEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 110 ~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
.....+|+.++....||.|.+..|.- .--.+....++.+=..+.||.--||.+-+=+|+.|.
T Consensus 126 --~~~i~~W~~s~~~w~rR~ai~~~l~~-------~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~ 187 (220)
T 2b6c_A 126 --PTIFALFYGAENFWNRRVALNLQLML-------KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYS 187 (220)
T ss_dssp --HHHHHHHTTCSSHHHHHHHHHTTTTC-------GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHcCCCHHHHHHHHHHHHHH-------HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 12467899999999999998866532 112344566776666899999999999999998765
No 100
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=73.98 E-value=20 Score=35.63 Aligned_cols=55 Identities=9% Similarity=0.059 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhhCCc--hhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q psy11494 129 HAAVLVLKELAVTVPT--IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 129 ~AAvLvLrELa~naPt--~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii 183 (197)
-+|++.+..|+...+. -+-+|+-.++..+..++-|+...||++|..|+.+....+
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~ 126 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAV 126 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhC
Confidence 7899999999977533 568888889999999999999999999999998877654
No 101
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=69.30 E-value=49 Score=32.05 Aligned_cols=136 Identities=16% Similarity=0.183 Sum_probs=87.8
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCC---cc----hhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccC
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVG---NV----NSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISG 101 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~---~~----~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG 101 (197)
.-+.|.+++.+++..=|..+..+|-.|.....+ .. ..+-.+=-+.|-.++.+.|.++-+.|+++++.+...-.
T Consensus 607 a~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~ 686 (778)
T 3opb_A 607 YWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIP 686 (778)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCh
Confidence 557788888887777788888888888743211 00 00111113456667788999999999999999865333
Q ss_pred cchhhhHHH--HHHHHHhhhcCC-CcchhhHHHHHHHHHHHhhCC-----chhHhhh--hHHHHHHHhhhcCC
Q psy11494 102 TFSAEYADF--EMKKAIEWLGGD-RVEGKRHAAVLVLKELAVTVP-----TIFYQHV--QAFFDFVFSAVRDP 164 (197)
Q Consensus 102 ~~~~~~Ve~--ev~~AlewL~~~-r~e~rR~AAvLvLrELa~naP-----t~~~~~v--~~~~d~Iw~aLrDp 164 (197)
.....+++. -++..++-|+.- ..+.-|+-|+.+++-|+..+| ..+..++ ....+.+=..++++
T Consensus 687 ~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 687 LIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRG 759 (778)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred HHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence 344555554 366667777652 566677888888899998555 3444444 44555555555555
No 102
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=68.29 E-value=64 Score=28.53 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=31.1
Q ss_pred hhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhh
Q psy11494 145 IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQ 185 (197)
Q Consensus 145 ~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~ 185 (197)
-....+..+=+.|...+.....-||-.+.+.+..+..+-+.
T Consensus 147 ~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~ 187 (386)
T 3o2t_A 147 ACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSP 187 (386)
T ss_dssp HHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCC
Confidence 45666777777777766667899999999999977655553
No 103
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=67.39 E-value=77 Score=30.70 Aligned_cols=105 Identities=10% Similarity=0.116 Sum_probs=72.8
Q ss_pred CChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcC--CCcchhhHHHHHHHHHHHhhCCchhHh----hhhHHH
Q psy11494 81 NDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGG--DRVEGKRHAAVLVLKELAVTVPTIFYQ----HVQAFF 154 (197)
Q Consensus 81 ~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~--~r~e~rR~AAvLvLrELa~naPt~~~~----~v~~~~ 154 (197)
.|+.++..++....++-..-..+...+++.-+.+.++.+.. +....-|-+..-+|..++.+.|..|++ .+..++
T Consensus 772 ~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~ 851 (1049)
T 3m1i_C 772 RDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFV 851 (1049)
T ss_dssp CCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHH
Confidence 46666666665555443211123345556666666777753 223345678888999999999998875 267788
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHHHHHHHhh
Q psy11494 155 DFVFSAVRDPKPEIRLHAVKAIRAALVVTAQ 185 (197)
Q Consensus 155 d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~ 185 (197)
+++--++.+|...+..++...+...+.....
T Consensus 852 ~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~ 882 (1049)
T 3m1i_C 852 DAICWAFKHNNRDVEVNGLQIALDLVKNIER 882 (1049)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHHHh
Confidence 8855688999999999999999888887754
No 104
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=66.38 E-value=49 Score=26.52 Aligned_cols=130 Identities=10% Similarity=-0.003 Sum_probs=75.9
Q ss_pred HHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHH-HHHHHHHhhhccCcchhhhHHH
Q psy11494 32 HIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRY-AAKTVGKLAQISGTFSAEYADF 110 (197)
Q Consensus 32 ~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~-AA~~lG~L~~~gG~~~~~~Ve~ 110 (197)
.+.+|.+++.-..++. ||+.|-....--+...+..+-.|+.. .++-.++-. |.+++|++...--....+
T Consensus 65 ~~~~L~~~~~~E~r~~---ai~~l~~~~k~~~~~~l~~~~~~l~~---~~nWd~~D~~a~~~~g~~~~~~p~~~~~---- 134 (232)
T 3jxy_A 65 IIRELWDLPEREFQAA---ALDIMQKYKKHINETHIPFLEELIVT---KSWWDSVDSIVPTFLGDIFLKHPELISA---- 134 (232)
T ss_dssp HHHHHHTSSBHHHHHH---HHHHHHHTGGGCCGGGHHHHHHHHTS---SCCHHHHHHHTTTHHHHHHHHCGGGGGG----
T ss_pred HHHHHhcCcHHHHHHH---HHHHHHHHHHhCCHHHHHHHHHHHcc---CCChHHHHHhhHHHHHHHHHHCHHHHHH----
Confidence 3455667765333333 44444332110111223444444442 355555544 458888887642111222
Q ss_pred HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 111 EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 111 ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
...+|+.++....||.|-+..|.- ..-.....+++.|=..+.|+.--|+.+-+=+|+.|.+
T Consensus 135 ---~l~~W~~s~~~w~rR~ai~~~l~~-------~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k 195 (232)
T 3jxy_A 135 ---YIPKWIASDNIWLQRAAILFQLKY-------KQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAK 195 (232)
T ss_dssp ---THHHHHHSSCHHHHHHHHHTTTTC-------GGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHhcCCchHHHHHHHHHHHHH-------HhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 346799999999999998876421 1222234556666678999999999999999987654
No 105
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=55.18 E-value=1e+02 Score=26.56 Aligned_cols=109 Identities=16% Similarity=0.136 Sum_probs=87.6
Q ss_pred hCC-CCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCC--cchhhHHHHHHHHHHHhhCCchhHhh----
Q psy11494 77 LLP-SNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDR--VEGKRHAAVLVLKELAVTVPTIFYQH---- 149 (197)
Q Consensus 77 ~l~-~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r--~e~rR~AAvLvLrELa~naPt~~~~~---- 149 (197)
..| ..|++|....|-...|+-..-.....++.+.-....++.+..+- -..-|.+=-.+|+.+..+++..++..
T Consensus 85 ~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~ 164 (321)
T 1w9c_A 85 NVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQ 164 (321)
T ss_dssp SCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHH
T ss_pred CCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHH
Confidence 345 57999999999999988765555667788888889999998643 34467778889999999999887764
Q ss_pred hhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhh
Q psy11494 150 VQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQ 185 (197)
Q Consensus 150 v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~ 185 (197)
...++|.|--|.+++...|-|.+...+...|.=+++
T Consensus 165 fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~ 200 (321)
T 1w9c_A 165 FKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ 200 (321)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhc
Confidence 567888877799999999999988888887777764
No 106
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=53.69 E-value=31 Score=26.02 Aligned_cols=85 Identities=11% Similarity=0.088 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCC----cchhhhHHHHHHHhhhCC---CCChhHHHHHHHHHHHhh
Q psy11494 25 FTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVG----NVNSRNIRFANYLRNLLP---SNDIGVMRYAAKTVGKLA 97 (197)
Q Consensus 25 ~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~----~~~~~~~rf~~yL~~~l~---~~D~~vm~~AA~~lG~L~ 97 (197)
+...|-+.+.+-++...+..|+++++.+|.++.--.. +.......|+..|-.++. ..+...-..--++++-+-
T Consensus 39 ~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~~~~~r~kl~rLl~iW~ 118 (145)
T 3d9j_A 39 FYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQ 118 (145)
T ss_dssp GHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 4555566677777777778899999999999844211 112345567666655432 234666666666666554
Q ss_pred hccCcchhhhHHH
Q psy11494 98 QISGTFSAEYADF 110 (197)
Q Consensus 98 ~~gG~~~~~~Ve~ 110 (197)
.+|.+..++++.
T Consensus 119 -~r~vF~~~~l~~ 130 (145)
T 3d9j_A 119 -KNNVFKSEIIQP 130 (145)
T ss_dssp -HTTSSCHHHHHH
T ss_pred -CCCCCCHHHHHH
Confidence 367888888764
No 107
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=52.76 E-value=1.1e+02 Score=26.35 Aligned_cols=153 Identities=12% Similarity=0.121 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHhhCC---chhHHHHHHHHHHHHhhcCC-CcchhhhHH-HHHHHhh--hCCCCChhHHHHHHHHHHHh
Q psy11494 24 AFTDAFNHHIFEMVSAN---DVNEKKSGIIAIVCLLHVDV-GNVNSRNIR-FANYLRN--LLPSNDIGVMRYAAKTVGKL 96 (197)
Q Consensus 24 ~~~~~l~~~I~~L~~s~---d~~eklggI~aId~Li~~~~-~~~~~~~~r-f~~yL~~--~l~~~D~~vm~~AA~~lG~L 96 (197)
.|..+++ .+.++++|+ ...+.-.=-.|+|.|.++.- ....-+++. =-..|+. |....++.+-+.|++++|--
T Consensus 19 eFs~~F~-~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~~~~~~~~~~rE~aarII~ss 97 (315)
T 3qml_C 19 EFSSDFK-EMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLSLNENLPLTLRELSTRVITSC 97 (315)
T ss_dssp TTHHHHH-HHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred chHHHHH-HHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHHhhccCChhHHHHHHHHHHHH
Confidence 3555555 567777765 22333344678899988831 112223332 1122233 33456888999999999987
Q ss_pred hhc-cCcc------hhhhHHHHHHHHHhhhcCC--C--cchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCc
Q psy11494 97 AQI-SGTF------SAEYADFEMKKAIEWLGGD--R--VEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPK 165 (197)
Q Consensus 97 ~~~-gG~~------~~~~Ve~ev~~AlewL~~~--r--~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk 165 (197)
.+. +.++ -.+||+.-.+..-.++... . .-.+|| +-||.+|+.+...+ ..+=-..+..|.... ...
T Consensus 98 LRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~--LsII~~L~~~~~~F-~~~~m~~L~~ly~~~-~~d 173 (315)
T 3qml_C 98 LRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRY--LSILNELPVTSEDL-PIYSTVVLQNVYERN-NKD 173 (315)
T ss_dssp HTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHH--HHHHHHSCCCSTTC---CCHHHHHHHHHHT-TTC
T ss_pred HccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHH--HHHHHHHhcChHhh-hhccHHHHHHHHccC-CCC
Confidence 775 3222 1246655554432332110 1 122333 34567888887333 333224444555432 337
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11494 166 PEIRLHAVKAIRAALV 181 (197)
Q Consensus 166 ~~iRe~Aa~aL~~cL~ 181 (197)
..++..+++.+..++.
T Consensus 174 ~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 174 KQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc
Confidence 7888888899998885
No 108
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=52.54 E-value=1.6e+02 Score=27.95 Aligned_cols=108 Identities=18% Similarity=0.209 Sum_probs=76.2
Q ss_pred HHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHH---HHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhH
Q psy11494 71 ANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYAD---FEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFY 147 (197)
Q Consensus 71 ~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve---~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~ 147 (197)
...|-.+|.+.|..+...|-+.|.-|+..-+..+.+.+- .=|.+-++-|.. .+|.=|-.|+++|.+|+++.|-+
T Consensus 124 i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallLL~~Lt~~n~~i-- 200 (651)
T 3grl_A 124 VTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLLLQALTRSNGAI-- 200 (651)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHHHHHHHTTCHHH--
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHHHHHHhcCCHHH--
Confidence 344566788999999999999999999875554444333 245666666764 56999999999999999988653
Q ss_pred hhhh---HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHh
Q psy11494 148 QHVQ---AFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 148 ~~v~---~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
+.+- ..||.++.-++.-.. + .++.....||.++.
T Consensus 201 QklVAFEnaFe~Lf~Ii~~Eg~-~--~Ggivv~DCL~ll~ 237 (651)
T 3grl_A 201 QKIVAFENAFERLLDIITEEGN-S--DGGIVVEDCLILLQ 237 (651)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTG-G--GSHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCC-C--ccchhHHHHHHHHH
Confidence 3332 347777777766554 2 35566777777764
No 109
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=52.41 E-value=34 Score=26.05 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=42.8
Q ss_pred hhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHH-----Hhhhc------CCcHHHHHHHHHHHHHH
Q psy11494 117 EWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFV-----FSAVR------DPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 117 ewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~I-----w~aLr------Dpk~~iRe~Aa~aL~~c 179 (197)
+.|.. +..+.+|=|..+|.-|..+-+.-|...+..-...| |...= |+-..||+.|.+++...
T Consensus 56 kRL~~-k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 56 KRLDN-KSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp HHHTS-SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHhcC-CCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 33443 45568899999999999998887776654333322 44443 44599999999988743
No 110
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=49.35 E-value=43 Score=27.07 Aligned_cols=67 Identities=6% Similarity=0.067 Sum_probs=50.4
Q ss_pred HHHHHhhhcCCCcchhhHHHH----HHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 112 MKKAIEWLGGDRVEGKRHAAV----LVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 112 v~~AlewL~~~r~e~rR~AAv----LvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
.....+|+.++....+|.|-+ ++.+ +...- .=-..+..+++.|=..+.|+...|+-+..=+|+.|.+
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~-~~~k~--~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk 180 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGN-RKDNA--FSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAI 180 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHH-SCGGG--SCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhh-ccccC--cChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Confidence 345778999999999998888 5444 11110 0124678889999999999999999999999987765
No 111
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=46.44 E-value=90 Score=23.39 Aligned_cols=82 Identities=13% Similarity=0.000 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhh----CCCCChhHHHHHHHHHHHhhhc-
Q psy11494 25 FTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNL----LPSNDIGVMRYAAKTVGKLAQI- 99 (197)
Q Consensus 25 ~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~----l~~~D~~vm~~AA~~lG~L~~~- 99 (197)
+...|-+-|.+-+++..+..|+++++.+|..+.--+.+ ....|+..|-.+ ....|..+-..--++++=+-..
T Consensus 40 ~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~---y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~~ 116 (144)
T 1sz9_A 40 CAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSP---YTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPN 116 (144)
T ss_dssp GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTT---HHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCcc
Confidence 34445555666666777889999999999999543333 233455444333 3345777777767776666532
Q ss_pred -c--CcchhhhHH
Q psy11494 100 -S--GTFSAEYAD 109 (197)
Q Consensus 100 -g--G~~~~~~Ve 109 (197)
| +.+..++++
T Consensus 117 ~~~~~vF~~~~l~ 129 (144)
T 1sz9_A 117 DTGLPLFEGSALE 129 (144)
T ss_dssp GCSSCSSCHHHHH
T ss_pred cCCCCCCCHHHHH
Confidence 3 456677664
No 112
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=44.93 E-value=2.3e+02 Score=27.63 Aligned_cols=118 Identities=10% Similarity=0.026 Sum_probs=78.5
Q ss_pred CchhHHHHHHHHHHHHhhcCCC------cchhhhHHHHHHHhhhCC-----CCChhHHHHHHHHHHHhhhccCcchhhhH
Q psy11494 40 NDVNEKKSGIIAIVCLLHVDVG------NVNSRNIRFANYLRNLLP-----SNDIGVMRYAAKTVGKLAQISGTFSAEYA 108 (197)
Q Consensus 40 ~d~~eklggI~aId~Li~~~~~------~~~~~~~rf~~yL~~~l~-----~~D~~vm~~AA~~lG~L~~~gG~~~~~~V 108 (197)
++=.+.=.++.++..+-|.=.. +......++..+|..++. ..-+.|-..+-+++|+.+.-=.. ..+++
T Consensus 455 ~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~-~~~~l 533 (980)
T 3ibv_A 455 NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY-ESAAI 533 (980)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT-CCTTH
T ss_pred CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc-CchhH
Confidence 3445666888888877654111 112334566677777654 34577888899999998764211 22444
Q ss_pred HHHHHHHHhhhcC-----CCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhc
Q psy11494 109 DFEMKKAIEWLGG-----DRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVR 162 (197)
Q Consensus 109 e~ev~~AlewL~~-----~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLr 162 (197)
..+++++-. +.+..=|.+|+-.++-+++.++..+.+|++.++..+=..|.
T Consensus 534 ----~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 534 ----PALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp ----HHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGC
T ss_pred ----HHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhc
Confidence 455665543 22334467788889999999999999999999999877665
No 113
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=44.88 E-value=60 Score=24.66 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=44.7
Q ss_pred CCcchhhHHHHHHHHHHHhhCCchhHhhhhH--HHHH-HHhhh---cCCcHHHHHHHHHHHHHHHH
Q psy11494 122 DRVEGKRHAAVLVLKELAVTVPTIFYQHVQA--FFDF-VFSAV---RDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 122 ~r~e~rR~AAvLvLrELa~naPt~~~~~v~~--~~d~-Iw~aL---rDpk~~iRe~Aa~aL~~cL~ 181 (197)
.++.+.-+-|+-+|-.+.+|...-|...+.+ |++. +-..+ .+|...||+...+.+..--.
T Consensus 65 ~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 65 NKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4556666889999999999999999998754 7777 33434 35667899988877765433
No 114
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=44.35 E-value=87 Score=22.60 Aligned_cols=81 Identities=9% Similarity=-0.018 Sum_probs=48.0
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCc-chhhhHHHHHHHhhhCCC-CChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGN-VNSRNIRFANYLRNLLPS-NDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~-~~~~~~rf~~yL~~~l~~-~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
|-+-|.+-++...++.|++.++.+|.++.--... .......|...|-.++.. .|.+..+.--+++.-+- -.+.+..+
T Consensus 41 Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~~~~~~~~kl~~ll~iW~-~r~vf~~~ 119 (132)
T 4flb_A 41 IVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSVERIFKIWE-DRNVYPEE 119 (132)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTTCSTTTHHHHHHHHHHHH-HHTSSCHH
T ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCCcCHH
Confidence 4445666667777789999999999998542111 122233455555554442 36666555555555443 24567777
Q ss_pred hHHH
Q psy11494 107 YADF 110 (197)
Q Consensus 107 ~Ve~ 110 (197)
+++.
T Consensus 120 ~i~~ 123 (132)
T 4flb_A 120 MIVA 123 (132)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 115
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=43.80 E-value=1.2e+02 Score=24.15 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=67.5
Q ss_pred HHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCC---CChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHH--hhhcCC
Q psy11494 48 GIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPS---NDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAI--EWLGGD 122 (197)
Q Consensus 48 gI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~---~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~Al--ewL~~~ 122 (197)
-+..+.+|++-..-.-...+..+-..+-.|+-+ +...+=..||+.++++++.-|...... ...|-+.+ .|+...
T Consensus 66 lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L-~~RI~~tl~k~l~dp~ 144 (196)
T 4atg_A 66 CIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTL-APRVLKTLKGVWMDPN 144 (196)
T ss_dssp HHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTH-HHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchH-HHHHHHHHHHHHcCCC
Confidence 355667777665433333333433333333321 122788999999999998755433333 33443433 366778
Q ss_pred CcchhhHHHHHHHHHHHhhCC-chhHhhhhHHHHHH
Q psy11494 123 RVEGKRHAAVLVLKELAVTVP-TIFYQHVQAFFDFV 157 (197)
Q Consensus 123 r~e~rR~AAvLvLrELa~naP-t~~~~~v~~~~d~I 157 (197)
++-.-+|-|+.-|.+|...+= ++++|+++.+.+.|
T Consensus 145 ~~l~t~YGAi~GL~~lG~~~vr~~llP~l~~~~~~~ 180 (196)
T 4atg_A 145 RSEDSQYGALYCLSILSKNVVNTVIREHAEEYKRTI 180 (196)
T ss_dssp SCHHHHHHHHHHHHHHCHHHHHTHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHhHHHHHHHhhhcCHHHHHHHH
Confidence 899999999999999988743 35557776665443
No 116
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=43.47 E-value=2.5e+02 Score=27.62 Aligned_cols=105 Identities=11% Similarity=0.122 Sum_probs=79.6
Q ss_pred CCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCc--chhhHHHHHHHHHHHhhCCchhHh----hhhHH
Q psy11494 80 SNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRV--EGKRHAAVLVLKELAVTVPTIFYQ----HVQAF 153 (197)
Q Consensus 80 ~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~--e~rR~AAvLvLrELa~naPt~~~~----~v~~~ 153 (197)
..|++|+-..+-..-++...-.....++.+.-+...++-+..+-. ..-|..=--+|+.+..++|..|+. .+..+
T Consensus 771 ~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~ 850 (1023)
T 4hat_C 771 ARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLF 850 (1023)
T ss_dssp GCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHH
Confidence 469999999999988886432223556777888889999986433 334666677889999999998877 46789
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHHHHHHHh
Q psy11494 154 FDFVFSAVRDPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 154 ~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
+|.|--|++++...|=+.+...+...+.=+.
T Consensus 851 ~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~ 881 (1023)
T 4hat_C 851 VDAICWAFKHNNRDVEVNGLQIALDLVKNIE 881 (1023)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHHH
Confidence 9998889999988777777777766665554
No 117
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=42.50 E-value=1.3e+02 Score=23.89 Aligned_cols=70 Identities=10% Similarity=0.057 Sum_probs=49.7
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCc
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGT 102 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~ 102 (197)
+...|-...+.+-..+-.+.++.|-.+|.-+.. . -.--...|++-|.++++.+...|=.+|.-++..+|.
T Consensus 6 ~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~-~---~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~ 75 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPDWPSILLICDEINQKDV-T---PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA 75 (220)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSS-C---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCc-C---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCH
Confidence 334455555555556677888888888865422 2 223455677777889999999999999999999887
No 118
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=41.17 E-value=77 Score=26.44 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=54.6
Q ss_pred cchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhcch
Q psy11494 124 VEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRES 188 (197)
Q Consensus 124 ~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~Re~ 188 (197)
.-..|.+|+=.|.+.....|..+...+.-+|..+=..+.|+...|=..+.++|...+..+..++.
T Consensus 59 d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 44678999999999988899988888888888554456799999999999999999999887753
No 119
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=41.03 E-value=42 Score=26.05 Aligned_cols=35 Identities=9% Similarity=0.015 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhc
Q psy11494 24 AFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHV 58 (197)
Q Consensus 24 ~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~ 58 (197)
+++..|-+.|+.-++..-..-|+||++.||..+.-
T Consensus 37 ~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~ 71 (157)
T 3clj_A 37 DIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRA 71 (157)
T ss_dssp GGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHH
Confidence 45666777788888776667799999999999743
No 120
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=40.54 E-value=1.8e+02 Score=25.23 Aligned_cols=108 Identities=16% Similarity=0.042 Sum_probs=70.9
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhc-----CCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchh
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHV-----DVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSA 105 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~-----~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~ 105 (197)
..|..++...+-|-.-=++.|+.+|++. +....+..+.++++++. +.+..|++.|-+.|-.++..+ ....
T Consensus 163 ~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~----s~~~~V~k~AL~LL~v~V~~s-e~~~ 237 (339)
T 3dad_A 163 SCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCA----SLSRLVVKTALKLLLVFVEYS-ENNA 237 (339)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGG----CSCHHHHHHHHHHHHHHHHHC-GGGH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHc----CccHHHHHHHHHHHHHHHccC-cccc
Confidence 4577888888888888889999999877 22224445556666555 689999999999999988764 2234
Q ss_pred hhHHHHHH------------HHHhhhc---CCCcchhhHHHHHHHHHHHhhCCc
Q psy11494 106 EYADFEMK------------KAIEWLG---GDRVEGKRHAAVLVLKELAVTVPT 144 (197)
Q Consensus 106 ~~Ve~ev~------------~AlewL~---~~r~e~rR~AAvLvLrELa~naPt 144 (197)
..|..+++ .-++-|+ +...|- ..-|.-++-.+-.++|.
T Consensus 238 ~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~el-q~~amtLIN~lL~~apd 290 (339)
T 3dad_A 238 PLFIRAVNSVASTTGAPPWANLVSILEEKNGADPEL-LVYTVTLINKTLAALPD 290 (339)
T ss_dssp HHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHH-HHHHHHHHHHHHHHCSS
T ss_pred hHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHH-HHHHHHHHHHHHhcCCC
Confidence 46666666 4555665 223333 33344445566666774
No 121
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=37.00 E-value=3.3e+02 Score=27.13 Aligned_cols=105 Identities=14% Similarity=0.120 Sum_probs=80.0
Q ss_pred CCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCc--chhhHHHHHHHHHHHhhCCchhHh----hhhHH
Q psy11494 80 SNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRV--EGKRHAAVLVLKELAVTVPTIFYQ----HVQAF 153 (197)
Q Consensus 80 ~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~--e~rR~AAvLvLrELa~naPt~~~~----~v~~~ 153 (197)
..|++|+...|-..-|+...-......+.+.-....++.+..+-. ..-|..=-.+|+.+..++|..|+. ++..+
T Consensus 797 ~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~ 876 (1073)
T 3gjx_A 797 AREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLV 876 (1073)
T ss_dssp GCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHH
Confidence 579999999999888776643344567888888899999975433 335677778899999999998887 45669
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHHHHHHHh
Q psy11494 154 FDFVFSAVRDPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 154 ~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
+|.|--|++++...|=+.+...+...+.=+.
T Consensus 877 i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~ 907 (1073)
T 3gjx_A 877 LDSIIWAFKHTMRNVADTGLQILFTLLQNVA 907 (1073)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHHHhh
Confidence 9998889999887777777666666665544
No 122
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=36.85 E-value=1.5e+02 Score=28.51 Aligned_cols=59 Identities=8% Similarity=-0.002 Sum_probs=37.2
Q ss_pred cchhhhHHHHHHHHHhhhcCC-CcchhhHHHHH---HHHHHHhhCCchhHhhhhHHHHHHHhh
Q psy11494 102 TFSAEYADFEMKKAIEWLGGD-RVEGKRHAAVL---VLKELAVTVPTIFYQHVQAFFDFVFSA 160 (197)
Q Consensus 102 ~~~~~~Ve~ev~~AlewL~~~-r~e~rR~AAvL---vLrELa~naPt~~~~~v~~~~d~Iw~a 160 (197)
.+..++++.-+++..+|..+. ...+.+..+.+ ++..+++..|..+-.+++.+.++|-.-
T Consensus 550 ~lS~~if~~~l~k~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~~~~~~~p~l~~~i~~~ 612 (799)
T 1vsy_4 550 SMDDKIFNYFASLLNRNFWSNDSFKEKDPNYELVTIPLAALVRRNNGLSKELVRTLLFHIKEQ 612 (799)
T ss_dssp TBCHHHHHHHHHHHHHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666532 23345555555 578999999996555677777777643
No 123
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=35.62 E-value=2.6e+02 Score=25.69 Aligned_cols=116 Identities=18% Similarity=0.186 Sum_probs=58.0
Q ss_pred HHHHHHHhhCCchhHHHHH--------------HHHHHHHhhcCCCcchhhhHHHHHHHhhhCC-CCChhHHHHHHHHHH
Q psy11494 30 NHHIFEMVSANDVNEKKSG--------------IIAIVCLLHVDVGNVNSRNIRFANYLRNLLP-SNDIGVMRYAAKTVG 94 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklgg--------------I~aId~Li~~~~~~~~~~~~rf~~yL~~~l~-~~D~~vm~~AA~~lG 94 (197)
+..|.+.++++....++++ =.|||+++|+=.++... +.+.+ ++.+.. +.| +.+..-+-+|+
T Consensus 31 y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~-IR~qa--ik~Lp~~ck~-~~i~kiaDvL~ 106 (507)
T 3u0r_A 31 YQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVS-IRRQA--IKELPQFATG-ENLPRVADILT 106 (507)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHH-HHHHH--HHHGGGGCCT-TCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHH-HHHHH--HHhhHHHhhh-hhhhhHHHHHH
Confidence 5678888888765555554 13666666652122111 22222 233322 455 45555666666
Q ss_pred HhhhccCcchhhhHHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHH
Q psy11494 95 KLAQISGTFSAEYADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAV 173 (197)
Q Consensus 95 ~L~~~gG~~~~~~Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa 173 (197)
+|.. +.|-+|.. |+.+| .+|.+.-| ...+..++.-+..+...+||...
T Consensus 107 QlLq-----tdd~~E~~~V~~sL-------------------~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~l 155 (507)
T 3u0r_A 107 QLLQ-----TDDSAEFNLVNNAL-------------------LSIFKMDA-------KGTLGGLFSQILQGEDIVRERAI 155 (507)
T ss_dssp HHTT-----CCCHHHHHHHHHHH-------------------HHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHh-----ccchHHHHHHHHHH-------------------HHHHhcCh-------HHHHHHHHHHHcccchHHHHHHH
Confidence 6655 23444432 33332 23333333 22333333334445789999977
Q ss_pred HHHHHHH
Q psy11494 174 KAIRAAL 180 (197)
Q Consensus 174 ~aL~~cL 180 (197)
..|+.-+
T Consensus 156 kFi~~kl 162 (507)
T 3u0r_A 156 KFLSTKL 162 (507)
T ss_dssp HHHHHHG
T ss_pred HHHHHHH
Confidence 7775443
No 124
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=35.14 E-value=2.3e+02 Score=24.70 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=69.1
Q ss_pred CCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhh----cCCCcchhhHHHHHHHHHHHhh--CCchhHhhh--h
Q psy11494 80 SNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWL----GGDRVEGKRHAAVLVLKELAVT--VPTIFYQHV--Q 151 (197)
Q Consensus 80 ~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL----~~~r~e~rR~AAvLvLrELa~n--aPt~~~~~v--~ 151 (197)
...-++.--|-.++-.|...-..++++|++..-++=+++. +++.---|| =++-+|.||... -..++-.|+ +
T Consensus 175 ~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR-QSlKLLgelLldr~N~~vM~~Yis~~ 253 (341)
T 1upk_A 175 MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR-QSLKLLGELLLDRHNFTIMTKYISKP 253 (341)
T ss_dssp CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH-HHHHHHHHHHHSGGGHHHHHHHTTCH
T ss_pred CCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH-HHHHHHHHHHhCchHHHHHHHHhCCH
Confidence 3566677777778877776655678899887666655544 333333344 467788888887 445677776 5
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 152 AFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 152 ~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
..+..+...|||++..|+-.|-..+.
T Consensus 254 ~nLkl~M~LL~d~sk~Iq~EAFhVFK 279 (341)
T 1upk_A 254 ENLKLMMNLLRDKSRNIQFEAFHVFK 279 (341)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchhchhhhhhhhee
Confidence 78899999999999999888766554
No 125
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=33.69 E-value=3.4e+02 Score=26.72 Aligned_cols=89 Identities=12% Similarity=0.032 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCC
Q psy11494 85 VMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDP 164 (197)
Q Consensus 85 vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDp 164 (197)
++...+...++.|...+.+..++|+.-.+...+-+.. +.+..+..++..|.-+.. |..+ +.+..+++.+=..=-+.
T Consensus 415 a~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~-~~~~~~~~~LkaLGN~g~--p~~l-~~l~~~l~~~~~~~~~~ 490 (1056)
T 1lsh_A 415 AVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDR-AKEEEIVLALKALGNAGQ--PNSI-KKIQRFLPGQGKSLDEY 490 (1056)
T ss_dssp HHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTC--GGGH-HHHHTTSTTSSSCCCCS
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhc-CChHHHHHHHHHhhccCC--hhHH-HHHHHhhcCcccccccc
Confidence 3344444445555554556666666555554455543 234455444444433332 4321 12222221110000122
Q ss_pred cHHHHHHHHHHHH
Q psy11494 165 KPEIRLHAVKAIR 177 (197)
Q Consensus 165 k~~iRe~Aa~aL~ 177 (197)
...||.+|..||+
T Consensus 491 ~~rvr~aAi~ALr 503 (1056)
T 1lsh_A 491 STRVQAEAIMALR 503 (1056)
T ss_dssp CHHHHHHHHHTTT
T ss_pred chHHHHHHHHHHH
Confidence 4567777877776
No 126
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=29.25 E-value=1.6e+02 Score=22.75 Aligned_cols=65 Identities=9% Similarity=0.119 Sum_probs=43.6
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhh---ccCcch
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQ---ISGTFS 104 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~---~gG~~~ 104 (197)
..++.+|++|+++.+-..+=.-|...++.+ .....+..+-.+ |.+.++..+++|+.++. ||++..
T Consensus 19 s~~L~~Lirs~~PeDL~~AN~LiK~m~~~d-~~r~e~~~k~~s---------eLe~V~~nv~LL~EML~~~~pg~~~~ 86 (158)
T 1naf_A 19 SKMLARLLKSSHPEDLRAANKLIKEMVQED-QKRMEKISKRVN---------AIEEVNNNVKLLTEMVMSHSQGGAAA 86 (158)
T ss_dssp HHHHHHHHSSCSTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHhccc-hhhHHHHHHHHH---------HHHHHHHHHHHHHHHHHhcCCCcCCC
Confidence 456889999999988888877777777654 223334444333 67778888899998876 454443
No 127
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.89 E-value=2.3e+02 Score=22.57 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=49.6
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCc
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGT 102 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~ 102 (197)
..|-...+.+-..+-.++|+-|--+|.-+... -..-...|++-|.++++.+...|=.+|.-++.++|.
T Consensus 11 ~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~----~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~ 78 (226)
T 3zyq_A 11 RLLDKATSQLLLETDWESILQICDLIRQGDTQ----AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQ 78 (226)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSC----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCcc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcch
Confidence 34444555555556778888888888754222 234455677778899999999999999999999887
No 128
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=27.80 E-value=43 Score=24.33 Aligned_cols=32 Identities=6% Similarity=-0.033 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHhh
Q psy11494 26 TDAFNHHIFEMVSANDVNEKKSGIIAIVCLLH 57 (197)
Q Consensus 26 ~~~l~~~I~~L~~s~d~~eklggI~aId~Li~ 57 (197)
.++|-+-|.+-++...++.|++.++.||.++.
T Consensus 37 a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ 68 (135)
T 4fu3_A 37 AGPIVSVWHRELRKAKSNRKLTFLYLANDVIQ 68 (135)
T ss_dssp HHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 33444556666666677889999999999974
No 129
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=27.71 E-value=1.5e+02 Score=26.11 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHhh-CCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 127 KRHAAVLVLKELAVT-VPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 127 rR~AAvLvLrELa~n-aPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
.|..-.-=++||+.+ -|++ +++||+.|...-.||...||.-.++.+...+
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsL----l~~fl~~il~f~~d~~~~vRk~~a~FieEa~ 91 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTL----LDNFLDEIIAFQADKSIEVRKFVIGFIEEAC 91 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGG----GGGGHHHHHGGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHH----HHHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence 577777777887664 5653 3566666666666777777777777666544
No 130
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=27.46 E-value=2.1e+02 Score=21.94 Aligned_cols=87 Identities=13% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHhhhccCcchhhhHHH-----------------------------HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhC
Q psy11494 92 TVGKLAQISGTFSAEYADF-----------------------------EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTV 142 (197)
Q Consensus 92 ~lG~L~~~gG~~~~~~Ve~-----------------------------ev~~AlewL~~~r~e~rR~AAvLvLrELa~na 142 (197)
++|-++.++++-..+.||. +.-+||.=--..++.+--+-|+.+|-.+.+|.
T Consensus 2 ~mg~~~~~~~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNC 81 (171)
T 1juq_A 2 AMGSMAEAEGESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNC 81 (171)
T ss_dssp ----------CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred CcccCCCCCCCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc
Q ss_pred CchhHhhh--hHHHHHHHhhhc------CCcHHHHHHHHHHHHH
Q psy11494 143 PTIFYQHV--QAFFDFVFSAVR------DPKPEIRLHAVKAIRA 178 (197)
Q Consensus 143 Pt~~~~~v--~~~~d~Iw~aLr------Dpk~~iRe~Aa~aL~~ 178 (197)
...|+..| ..|++.+-..+. .....||+...+.+..
T Consensus 82 G~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~ 125 (171)
T 1juq_A 82 GRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYS 125 (171)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
No 131
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=27.33 E-value=2e+02 Score=21.78 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=42.5
Q ss_pred CcchhhHHHHHHHHHHHhhCCchhHhhhhH--HHHHHHhhhcC-CcHHHHHHHHHHHHH
Q psy11494 123 RVEGKRHAAVLVLKELAVTVPTIFYQHVQA--FFDFVFSAVRD-PKPEIRLHAVKAIRA 178 (197)
Q Consensus 123 r~e~rR~AAvLvLrELa~naPt~~~~~v~~--~~d~Iw~aLrD-pk~~iRe~Aa~aL~~ 178 (197)
++.+.-+-|+.+|-.+.+|....|...|.. |++.+-..+.. +...||+...+.+..
T Consensus 64 ~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~ 122 (163)
T 1x5b_A 64 KVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVE 122 (163)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 556667779999999999999999988764 87776555543 457888888776653
No 132
>2l7k_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Clostridium difficile}
Probab=26.88 E-value=81 Score=21.67 Aligned_cols=43 Identities=23% Similarity=0.402 Sum_probs=32.2
Q ss_pred hHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHH
Q psy11494 67 NIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEM 112 (197)
Q Consensus 67 ~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev 112 (197)
-.+....++.+||.-|.+.-..|.+|++||-.-+ =++|-+.++
T Consensus 20 R~~lie~i~~~Lp~mD~eMr~La~~tl~KL~~MT---Daefael~l 62 (76)
T 2l7k_A 20 KRGLMENINAALPFMDEDMRELAKRTLAKIAPLT---ENEYAELAI 62 (76)
T ss_dssp HHHHHHHHHHSTTTSCHHHHHHHHHHHHHHTTCC---HHHHHHHSS
T ss_pred HHHHHHHHHHHcCcccHHHHHHHHHHHHHHHhcC---HHHHhhccc
Confidence 4466777788899889999999999999997642 245655443
No 133
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=25.69 E-value=2e+02 Score=21.88 Aligned_cols=43 Identities=9% Similarity=0.285 Sum_probs=34.0
Q ss_pred hCHHHHHHHHHHHHHH-------------HHHHhhCCchhHHHHHHHHHHHHhhcC
Q psy11494 17 VTVEEVTAFTDAFNHH-------------IFEMVSANDVNEKKSGIIAIVCLLHVD 59 (197)
Q Consensus 17 ~s~e~~~~~~~~l~~~-------------I~~L~~s~d~~eklggI~aId~Li~~~ 59 (197)
+|+|++.+|-++++.. -..|++|++..+..-||.-+..|...+
T Consensus 17 l~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~ 72 (144)
T 1y8m_A 17 LYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA 72 (144)
T ss_dssp CCHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 6777777776666533 457899999999999999999998754
No 134
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=25.41 E-value=1.1e+02 Score=19.44 Aligned_cols=44 Identities=14% Similarity=0.354 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhhc----CCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHH
Q psy11494 108 ADFEMKKAIEWLG----GDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFV 157 (197)
Q Consensus 108 Ve~ev~~AlewL~----~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~I 157 (197)
.+..|+||+|.|. +......+++|. -+---+-|+.-|..+.+++
T Consensus 5 L~RDv~RaiELle~lq~sgevp~~KL~aL------q~VLqSdF~~aVREVYEhv 52 (53)
T 1zl8_A 5 LERDVQRILELMEHVQKTGEVNNAKLASL------QQVLQSEFFGAVREVYETV 52 (53)
T ss_dssp HHHHHHHHHHHHHHHGGGSSSTHHHHHHH------HHHHSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHH------HHHHHHHHHHHHHHHHHHc
Confidence 4678999999885 223455666663 2223466777777666665
No 135
>2llh_A Nucleophosmin; nucleolar, chaperone, oncoprotein, DNA binding protein; NMR {Homo sapiens} PDB: 2vxd_A
Probab=29.97 E-value=16 Score=25.12 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=17.9
Q ss_pred hHHHHHHHhhhCCCCChhHHH
Q psy11494 67 NIRFANYLRNLLPSNDIGVMR 87 (197)
Q Consensus 67 ~~rf~~yL~~~l~~~D~~vm~ 87 (197)
-.+|.||+++++...|.+++.
T Consensus 45 E~KF~NyvKn~F~mtdqe~Iq 65 (74)
T 2llh_A 45 EAKFINYVKNCFRMTDQEAIQ 65 (74)
Confidence 447999999999999988764
No 136
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=24.02 E-value=1.7e+02 Score=21.88 Aligned_cols=76 Identities=17% Similarity=0.127 Sum_probs=51.5
Q ss_pred HHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCc-chhhhHHH
Q psy11494 32 HIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGT-FSAEYADF 110 (197)
Q Consensus 32 ~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~-~~~~~Ve~ 110 (197)
.|-...+.+-..+-.++++-|--+|.-+. +. -.-....|++-|.+.++.+...|=.+|--++..+|. +..++..+
T Consensus 5 ~iekATs~~l~~~dw~~~leicD~I~~~~-~~---~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~ 80 (148)
T 1mhq_A 5 WLNKATDPSMSEQDWSAIQNFCEQVNTDP-NG---PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKF 80 (148)
T ss_dssp HHHHHHCTTCSSCCHHHHHHHHHHHHHSS-HH---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHHcCC-cc---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH
Confidence 34445554445566788888877776652 21 233455677777889999999999999999999886 43444444
Q ss_pred H
Q psy11494 111 E 111 (197)
Q Consensus 111 e 111 (197)
+
T Consensus 81 ~ 81 (148)
T 1mhq_A 81 R 81 (148)
T ss_dssp H
T ss_pred H
Confidence 4
No 137
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=24.01 E-value=2e+02 Score=20.55 Aligned_cols=102 Identities=11% Similarity=0.124 Sum_probs=62.1
Q ss_pred HHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhC----Cc
Q psy11494 69 RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTV----PT 144 (197)
Q Consensus 69 rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~na----Pt 144 (197)
.|..-|..+= ..-...-..+.+++-+--. ..++|+.-.++ +.. ...++|++..-++=.+..|+ +.
T Consensus 9 ~l~~~L~~L~-~s~~sI~~~s~w~l~h~~~-----a~~Iv~~i~~~----l~~-~~~~~KL~~LYL~ndIl~ns~~~~~~ 77 (132)
T 4flb_A 9 SLDRKFQSVT-NTMESIQGLSSWCIENKKH-----HSTIVYHWMKW----LRR-SAYPHRLNLFYLANDVIQNCKRKNAI 77 (132)
T ss_dssp HHHHHHHHCC-SSHHHHHHHHHHHHHTGGG-----HHHHHHHHHHH----HHH-SCHHHHHHHHHHHHHHHHHTTTTTCT
T ss_pred HHHHHHHHCc-ccHHHHHHHHHHHHHhHHH-----HHHHHHHHHHH----HHc-CChhhHHHHHHHHHHHHHHhcccChH
Confidence 3455555542 2233455666777765422 33444322221 222 34568999999999999986 34
Q ss_pred hhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhcc
Q psy11494 145 IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRE 187 (197)
Q Consensus 145 ~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~Re 187 (197)
.|-..+..++..++..+.||+.. ..+..+|.+..+|.
T Consensus 78 ~f~~~f~~~l~~~~~~~~~~~~~------~kl~~ll~iW~~r~ 114 (132)
T 4flb_A 78 IFRESFADVLPEAAALVKDPSVS------KSVERIFKIWEDRN 114 (132)
T ss_dssp HHHHHHHTTHHHHHHTTCSTTTH------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHhccCC
Confidence 56666777777778788887643 34667888887764
No 138
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=23.97 E-value=2.7e+02 Score=22.06 Aligned_cols=116 Identities=11% Similarity=0.104 Sum_probs=75.0
Q ss_pred chhhhHHHHHHHhhhCC--CCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcc--hhhHHHHHHHHHH
Q psy11494 63 VNSRNIRFANYLRNLLP--SNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVE--GKRHAAVLVLKEL 138 (197)
Q Consensus 63 ~~~~~~rf~~yL~~~l~--~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e--~rR~AAvLvLrEL 138 (197)
....++.|.+++-.-+. ..|...+...-++.--|..+..-...-|+..-+...+..+-+.+-- .-|--|+-+|..+
T Consensus 38 L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I 117 (196)
T 4atg_A 38 LQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYI 117 (196)
T ss_dssp CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 34567777777765543 2488877777777777777776667779998888888888532211 3444555556668
Q ss_pred HhhCCchhHhhhhHHHHHHHhhhcCC--cHHHHHHHHHHHHH
Q psy11494 139 AVTVPTIFYQHVQAFFDFVFSAVRDP--KPEIRLHAVKAIRA 178 (197)
Q Consensus 139 a~naPt~~~~~v~~~~d~Iw~aLrDp--k~~iRe~Aa~aL~~ 178 (197)
+++-++....--+.+....-.++.|| .....-+|...|.+
T Consensus 118 ~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~ 159 (196)
T 4atg_A 118 YDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSI 159 (196)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH
Confidence 87744433333466666666777887 45556666665554
No 139
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=22.94 E-value=2.2e+02 Score=21.38 Aligned_cols=43 Identities=9% Similarity=0.285 Sum_probs=33.7
Q ss_pred hCHHHHHHHHHHHHHH-------------HHHHhhCCchhHHHHHHHHHHHHhhcC
Q psy11494 17 VTVEEVTAFTDAFNHH-------------IFEMVSANDVNEKKSGIIAIVCLLHVD 59 (197)
Q Consensus 17 ~s~e~~~~~~~~l~~~-------------I~~L~~s~d~~eklggI~aId~Li~~~ 59 (197)
+|.|++.+|-+++++. -..|++|++..+..-||.-+..|+..+
T Consensus 18 ~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~ 73 (134)
T 3o48_A 18 LYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA 73 (134)
T ss_dssp CCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 6677777776666542 457899999999999999999998654
No 140
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=22.52 E-value=4.4e+02 Score=23.93 Aligned_cols=76 Identities=11% Similarity=0.108 Sum_probs=47.2
Q ss_pred hhhhHHHHHHHhhhC------CCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHH
Q psy11494 64 NSRNIRFANYLRNLL------PSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKE 137 (197)
Q Consensus 64 ~~~~~rf~~yL~~~l------~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrE 137 (197)
-..+.++.++|..-- .++|+.+...|+.=+|.++++-. ..-.+++.
T Consensus 394 ~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P-~gr~i~~~--------------------------- 445 (480)
T 1ho8_A 394 YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLP-ESIDVLDK--------------------------- 445 (480)
T ss_dssp GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCT-THHHHHHH---------------------------
T ss_pred hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCc-chhHHHHH---------------------------
Confidence 334555666665321 14688899999999998888521 11112211
Q ss_pred HHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 138 LAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 138 La~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
| ..=+.|+..+.||...||-.|..|+..++
T Consensus 446 l-------------g~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 446 T-------------GGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp H-------------SHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred c-------------CcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 1 12345678888888888888888877665
No 141
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=21.52 E-value=1.9e+02 Score=21.98 Aligned_cols=68 Identities=13% Similarity=0.014 Sum_probs=50.0
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCc
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGT 102 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~ 102 (197)
..|-..++.+-..+-.+.++.|--+|.-+. +. -.-....|++-|.++++.+...|=.+|--++..+|.
T Consensus 18 ~~IekATs~~~~~~Dw~~~leicD~I~~~~-~~---~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~ 85 (163)
T 1x5b_A 18 QDVEKATNEYNTTEDWSLIMDICDKVGSTP-NG---AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGK 85 (163)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSS-SH---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCC-cc---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 445555555555667788888888886652 21 334556677778889999999999999999999887
No 142
>1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} SCOP: a.23.5.1 PDB: 2jvp_A 2k5s_A
Probab=20.47 E-value=2.1e+02 Score=19.40 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHHhh
Q psy11494 3 IATGASMVRTELREVTVEEVTAFTDAFNHHIFEMVS 38 (197)
Q Consensus 3 ~~~~~~~v~~~~re~s~e~~~~~~~~l~~~I~~L~~ 38 (197)
+.|+-..+...--.++++++..|+....|+.-||+.
T Consensus 21 ~eTLEkv~e~~~y~Lt~~el~~f~~AaDHR~AEL~~ 56 (72)
T 1jw2_A 21 IDTLERVIEKNKYELSDNELAVFYSAADHRLAELTM 56 (72)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777778888888888888888888875
No 143
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=20.44 E-value=6.4e+02 Score=25.04 Aligned_cols=133 Identities=11% Similarity=0.073 Sum_probs=84.1
Q ss_pred HHHHHHHhhCC--chhHHHHHHHHHHHHhhcCCC-cchhhhHHHHHHHhhhCC---CCChhHHHHHH--HHHHHhhhccC
Q psy11494 30 NHHIFEMVSAN--DVNEKKSGIIAIVCLLHVDVG-NVNSRNIRFANYLRNLLP---SNDIGVMRYAA--KTVGKLAQISG 101 (197)
Q Consensus 30 ~~~I~~L~~s~--d~~eklggI~aId~Li~~~~~-~~~~~~~rf~~yL~~~l~---~~D~~vm~~AA--~~lG~L~~~gG 101 (197)
.+.+.+.+.++ +-...=+.+.||.+.-+.-.. .....+...-.+|-.+.. ++|...+..+. .++|+..+=-.
T Consensus 479 ~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~ 558 (1073)
T 3gjx_A 479 TKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLR 558 (1073)
T ss_dssp HHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHH
Confidence 33344334432 344555778899888644322 234556666667666543 34666555544 79998765210
Q ss_pred cchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHh--------hhhHHHHHHHhhhcCC
Q psy11494 102 TFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQ--------HVQAFFDFVFSAVRDP 164 (197)
Q Consensus 102 ~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~--------~v~~~~d~Iw~aLrDp 164 (197)
-..+|.+..++.-+++++.+..+ =.-|||.-+.-++..++..|.. |+.++++.+....-+=
T Consensus 559 -~h~~~L~~vl~~L~~~m~~~~~~-vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l 627 (1073)
T 3gjx_A 559 -AHWKFLKTVVNKLFEFMHETHDG-VQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDL 627 (1073)
T ss_dssp -HCHHHHHHHHHHHHHHTTCCSTT-HHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTC
T ss_pred -hCHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhc
Confidence 13679999999999999754333 3456778888999999987743 6777777766665553
Done!