RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11494
         (197 letters)



>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat.  The HEAT repeat family is
           related to armadillo/beta-catenin-like repeats (see
           pfam00514). These EZ repeats are found in subunits of
           cyanobacterial phycocyanin lyase and other proteins and
           probably carry out a scaffolding role.
          Length = 55

 Score = 31.3 bits (71), Expect = 0.038
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 128 RHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAI 176
           R AA L L  LA   P +    V      +   ++D   E+R  A  A+
Sbjct: 4   REAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWAL 52


>gnl|CDD|237379 PRK13412, fkp, bifunctional
           fucokinase/L-fucose-1-P-guanylyltransferase;
           Provisional.
          Length = 974

 Score = 32.1 bits (73), Expect = 0.20
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 82  DIGVMRYAAKTVGKLAQISGTFSAE-------YADFEMKKAIEWLGGDRVEGKRHAAVLV 134
           DIG+   + + V  L + SG            Y+DF +        GD        A+L 
Sbjct: 230 DIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILP 289

Query: 135 LK 136
           L 
Sbjct: 290 LP 291


>gnl|CDD|193407 pfam12934, FTO_CTD, FTO C-terminal domain.  This domain is found at
           the C-terminus of the FTO protein which was shown to be
           associated with increased BMI and obesity risk in
           humans. The N-terminal domain of this protein is a DNA
           demethylase and this domain is found to associate with
           the N-terminal domain in the crystal structure. This
           domain is alpha helical with three helices that form a
           bundle.
          Length = 172

 Score = 29.3 bits (66), Expect = 0.96
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 4/83 (4%)

Query: 117 EWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVR--DPKPEIRLHAVK 174
           EWL    ++G RHA         +   T  +  ++     V  A++      E    A  
Sbjct: 49  EWLRQFWLQGSRHAKCHDYWTQPIAELTEAWDKMELMTRLVLDALKRASLTTEQPNRAYD 108

Query: 175 AIRAALVVTAQ--RESAKQSQKP 195
            +   L    +   E   + +  
Sbjct: 109 MLLYLLTERQELRDEWTARCRSG 131


>gnl|CDD|235447 PRK05409, PRK05409, hypothetical protein; Provisional.
          Length = 281

 Score = 28.2 bits (64), Expect = 2.8
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 4/28 (14%)

Query: 54  CLLHVDVGN--VNSRNIRF--ANYLRNL 77
           C L +DV N  VN+ N  F    YL  L
Sbjct: 168 CGLLLDVNNVYVNAVNHGFDPLAYLDAL 195


>gnl|CDD|176199 cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase.
            NAD-linked ribitol-5-phosphate dehydrogenase, a member
           of the MDR/zinc-dependent alcohol dehydrogenase-like
           family, oxidizes the phosphate ester of
           ribitol-5-phosphate to xylulose-5-phosphate of the
           pentose phosphate pathway. The medium chain
           dehydrogenases/reductase (MDR)/zinc-dependent alcohol
           dehydrogenase-like family, which contains the
           zinc-dependent alcohol dehydrogenase (ADH-Zn) and
           related proteins, is a diverse group of proteins related
           to the first identified member, class I mammalian ADH.
           MDRs display a broad range of activities and are
           distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P) binding-Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group contains a
           host of activities, including the founding alcohol
           dehydrogenase (ADH), quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the  NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones. Active site zinc has a
           catalytic role, while structural zinc aids in stability.
          Length = 341

 Score = 27.3 bits (61), Expect = 6.2
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 9/54 (16%)

Query: 65  SRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEW 118
           SRN   A YLR L+              V  +  I   F ++  +   K  +EW
Sbjct: 295 SRNPEVAEYLRKLVGG---------VFPVRSINDIHRAFESDLTNSWGKTVMEW 339


>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat.  The HEAT repeat family is related to
           armadillo/beta-catenin-like repeats (see pfam00514).
          Length = 31

 Score = 24.4 bits (54), Expect = 7.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 153 FFDFVFSAVRDPKPEIRLHAVKAIRA 178
               +   + DP PE+R  A +A+ A
Sbjct: 1   LLPLLLELLNDPDPEVREAAAEALGA 26


>gnl|CDD|236456 PRK09290, PRK09290, allantoate amidohydrolase; Reviewed.
          Length = 413

 Score = 27.0 bits (61), Expect = 7.7
 Identities = 8/27 (29%), Positives = 11/27 (40%)

Query: 161 VRDPKPEIRLHAVKAIRAALVVTAQRE 187
           +R P   +    V  +RAA    A R 
Sbjct: 289 IRHPDDAVLDALVAELRAAAEAIAARR 315


>gnl|CDD|162719 TIGR02129, hisA_euk, phosphoribosylformimino-5-aminoimidazole
           carboxamide ribotide isomerase, eukaryotic type.  This
           enzyme acts in the biosynthesis of histidine and has
           been characterized in S. cerevisiae and Arabidopsis
           where it complements the E. coli HisA gene. In
           eukaryotes the gene is known as HIS6. In bacteria, this
           gene is found in Fibrobacter succinogenes, presumably
           due to lateral gene transfer from plants in the rumen
           gut [Amino acid biosynthesis, Histidine family].
          Length = 253

 Score = 26.7 bits (59), Expect = 8.0
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 8   SMVRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGI 49
           ++   EL   T+EE++ + D F      ++ A DV     GI
Sbjct: 153 TITDLELNAETLEELSKYCDEF------LIHAADVEGLCKGI 188


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0715    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,058,137
Number of extensions: 948146
Number of successful extensions: 806
Number of sequences better than 10.0: 1
Number of HSP's gapped: 805
Number of HSP's successfully gapped: 19
Length of query: 197
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 105
Effective length of database: 6,857,034
Effective search space: 719988570
Effective search space used: 719988570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.4 bits)