RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11494
(197 letters)
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 39.2 bits (91), Expect = 4e-04
Identities = 17/119 (14%), Positives = 36/119 (30%), Gaps = 5/119 (4%)
Query: 58 VDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIE 117
V + + + L + + A + KL + F E+A + +
Sbjct: 430 AGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE---KFGKEWAHATIIPKVL 486
Query: 118 WLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAI 176
+ GD R + + L+ + V DP +R + K++
Sbjct: 487 AMSGDPNYLHRMTTLFCINVLSEVCGQDITT--KHMLPTVLRMAGDPVANVRFNVAKSL 543
Score = 33.8 bits (77), Expect = 0.030
Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 5/118 (4%)
Query: 74 LRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVL 133
+ L V + + LA G + + + WL D V R AA
Sbjct: 407 IVELAEDAKWRVRLAIIEYMPLLAGQLG--VEFFDEKLNSLCMAWLV-DHVYAIREAATS 463
Query: 134 VLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAKQ 191
LK+L V + DP R+ + I V Q + K
Sbjct: 464 NLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKH 519
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 38.5 bits (88), Expect = 8e-04
Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 8/107 (7%)
Query: 74 LRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVL 133
L + G A+ +GKL I + ++ R + V
Sbjct: 936 LLKHCECAEEGTRNVVAECLGKLTLIDPE--------TLLPRLKGYLISGSSYARSSVVT 987
Query: 134 VLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180
+K P ++ + DP +R A+ +A
Sbjct: 988 AVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAA 1034
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 35.4 bits (81), Expect = 0.006
Identities = 12/104 (11%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 74 LRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVL 133
L D + + ++A+ + A + + + A+
Sbjct: 112 LFANYRIGDEKTKINVSYALEEIAKANPMLMASIVR-----DFMSMLSSKNREDKLTALN 166
Query: 134 VLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIR 177
++ + ++V F + + + D +R AV+A+
Sbjct: 167 FIEAMGENSF----KYVNPFLPRIINLLHDGDEIVRASAVEALV 206
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 34.8 bits (79), Expect = 0.014
Identities = 7/50 (14%), Positives = 17/50 (34%)
Query: 127 KRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAI 176
+ + +LVL +A ++ + + D K +R +
Sbjct: 375 VKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTL 424
Score = 31.3 bits (70), Expect = 0.19
Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 4/109 (3%)
Query: 72 NYLRNLLPSNDIGVMRYAAKTVGKLAQ-ISGTFSAEYADFEMKKAIEWL---GGDRVEGK 127
L +LL S D A + K+ + + ++ D + I
Sbjct: 131 PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKI 190
Query: 128 RHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAI 176
R AV + + ++ H+ +F + +F+ D +PE+R + +A+
Sbjct: 191 RSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRAL 239
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.075
Identities = 20/160 (12%), Positives = 42/160 (26%), Gaps = 60/160 (37%)
Query: 7 ASMVRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSR 66
+ M+ + +T E+V + + N H+ K V++ VN
Sbjct: 336 SPMLS--ISNLTQEQVQDYVNKTNSHLPA--------GK-----------QVEISLVNGA 374
Query: 67 N-----------IRFANYLRNL--LPSND-----------IGVMRYAAKTVGKLAQISGT 102
LR D R+ L ++
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-------LP-VASP 426
Query: 103 FSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTV 142
F + + A + + D ++ K++ + V
Sbjct: 427 FHSHL----LVPASDLINKDL---VKNNVSFNAKDIQIPV 459
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 26.9 bits (59), Expect = 5.0
Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 1/106 (0%)
Query: 73 YLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAV 132
L L+ S D + A + L+ D + K + L + A+
Sbjct: 261 TLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPAL 320
Query: 133 LVLKELAVTVPTIFYQHVQA-FFDFVFSAVRDPKPEIRLHAVKAIR 177
+ + + A + + PK I+ A I
Sbjct: 321 RAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 26.3 bits (58), Expect = 7.7
Identities = 22/162 (13%), Positives = 44/162 (27%), Gaps = 29/162 (17%)
Query: 51 AIVCLLHVDVGNVNSRNIRFAN-----YLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSA 105
A + L ++ G+V ++ + L L S + + A + L +
Sbjct: 104 AGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL--------S 155
Query: 106 EYADFEMKKAIEWLGGDRV----------EGKRHAAVLVLKELAVTVPTIFYQHVQA--- 152
AD KK + +G + E + + L L+
Sbjct: 156 WRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGA 215
Query: 153 ---FFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAKQ 191
+ + I +R + A E +Q
Sbjct: 216 LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 257
>3awu_A Tyrosinase; tyrosinase, binary complex, type-3 copper, copper
transfer, oxidoreductase-metal transport complex; 1.16A
{Streptomyces castaneoglobisporus} PDB: 1wx2_A 1wx4_A
1wx5_A 1wx3_A 2ahk_A 2ahl_A 2zmx_A 2zmy_A 2zmz_A 2zwd_A
2zwe_A* 2zwf_A* 2zwg_A* 3aws_A 3awt_A 1wxc_A 3awv_A
3aww_A 3awx_A 3awy_A ...
Length = 281
Score = 26.2 bits (57), Expect = 8.2
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 10 VRTELREVTVEEVTAFTDAFN 30
VR +T +E F A
Sbjct: 3 VRKNQATLTADEKRRFVAAVL 23
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.133 0.379
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,072,170
Number of extensions: 184982
Number of successful extensions: 485
Number of sequences better than 10.0: 1
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 42
Length of query: 197
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 108
Effective length of database: 4,216,824
Effective search space: 455416992
Effective search space used: 455416992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.5 bits)