RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11494
(197 letters)
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 43.2 bits (100), Expect = 9e-06
Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 5/140 (3%)
Query: 39 ANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQ 98
A D + I L V + + + L + + A + KL +
Sbjct: 411 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 470
Query: 99 ISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVF 158
F E+A + + + GD R + + L+ + V
Sbjct: 471 K---FGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT--KHMLPTVL 525
Query: 159 SAVRDPKPEIRLHAVKAIRA 178
DP +R + K+++
Sbjct: 526 RMAGDPVANVRFNVAKSLQK 545
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1
(Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 42.4 bits (98), Expect = 2e-05
Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 8/109 (7%)
Query: 72 NYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAA 131
L + G A+ +GKL I + ++ R +
Sbjct: 931 ALLLKHCECAEEGTRNVVAECLGKLTLIDPE--------TLLPRLKGYLISGSSYARSSV 982
Query: 132 VLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180
V +K P ++ + DP +R A+ +A
Sbjct: 983 VTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAA 1031
Score = 25.5 bits (54), Expect = 5.8
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 130 AAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAI 176
A ++ EL + + + + D E++ AVK +
Sbjct: 23 ATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCL 69
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 40.1 bits (93), Expect = 9e-05
Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 13/146 (8%)
Query: 32 HIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFA-NYLRNLLPSNDIGVMRYAA 90
++S+N EK+ G + I L++ NS IR N ++N L S + M A
Sbjct: 70 EAVNLLSSNRYTEKQIGYLFISVLVN-----SNSELIRLINNAIKNDLASRNPTFMGLAL 124
Query: 91 KTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV 150
+A + AE E+ K + + GD ++ + +A L L L T P +
Sbjct: 125 HC---IANVGSREMAEAFAGEIPKIL--VAGDTMDSVKQSAALCLLRLYRTSPDLVPMG- 178
Query: 151 QAFFDFVFSAVRDPKPEIRLHAVKAI 176
+ V + D + A I
Sbjct: 179 -DWTSRVVHLLNDQHLGVVTAATSLI 203
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 35.5 bits (80), Expect = 0.003
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 127 KRHAAVLVLKELA-VTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAI 176
R AAV+ + P+ V + ++DP +R A +
Sbjct: 381 YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTV 431
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 29.5 bits (64), Expect = 0.30
Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 1/105 (0%)
Query: 74 LRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKA-IEWLGGDRVEGKRHAAV 132
L LL D V+ AA V +L++ + A +M A + +
Sbjct: 22 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 81
Query: 133 LVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIR 177
L L+ + + + P + +A+ +
Sbjct: 82 GTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126
Score = 27.2 bits (58), Expect = 1.6
Identities = 11/66 (16%), Positives = 23/66 (34%)
Query: 32 HIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAK 91
+++ + N ++ + L L LL S + GV YAA
Sbjct: 464 LFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAA 523
Query: 92 TVGKLA 97
+ +++
Sbjct: 524 VLFRMS 529
>d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 28.3 bits (63), Expect = 0.56
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 140 VTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAKQ 191
P F + F F+ S R+P+ ++ + + ES Q
Sbjct: 144 NNTPIFFIRDPILFPSFIHSQKRNPQTHLKDPD----MVWDFWSLRPESLHQ 191
>d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]}
Length = 484
Score = 27.6 bits (61), Expect = 1.00
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 141 TVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAKQ 191
PT F + F D V + DP+ + + R + E+ +
Sbjct: 125 NFPTFFIRDAIKFPDMVHAFKPDPRTNLDNDS----RRFDFFSHVPEATRT 171
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase
{Agrobacterium sp. [TaxId: 361]}
Length = 303
Score = 27.3 bits (59), Expect = 1.2
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 3/90 (3%)
Query: 96 LAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFD 155
+ Q AE + + + ++ L R A +V ELA+T +
Sbjct: 8 VGQQGPIARAETREQVVVRLLDML---TKAASRGANFIVFPELALTTFFPRWHFTDEAEL 64
Query: 156 FVFSAVRDPKPEIRLHAVKAIRAALVVTAQ 185
F P P +R KA +
Sbjct: 65 DSFYETEMPGPVVRPLFEKAAELGIGFNLG 94
>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
[TaxId: 562]}
Length = 571
Score = 27.2 bits (60), Expect = 1.3
Identities = 12/52 (23%), Positives = 16/52 (30%)
Query: 140 VTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAKQ 191
P F Q F DFV + +P I V+ Q E+
Sbjct: 175 NNTPIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHN 226
>d1gwea_ e.5.1.1 (A:) Catalase I {Micrococcus lysodeikticus [TaxId:
1270]}
Length = 498
Score = 26.8 bits (59), Expect = 2.0
Identities = 13/52 (25%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 140 VTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAKQ 191
P F + F F+ S R P +R T ESA Q
Sbjct: 128 NNTPIFFLRDPMKFTHFIRSQKRLPDSGLRDAT----MQWDFWTNNPESAHQ 175
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 26.4 bits (58), Expect = 2.9
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 138 LAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAKQ 191
+ P + + F D RDP+ +R A + ES Q
Sbjct: 122 VGNNTPVFYLRDPLKFPDLNHIVKRDPRTNMRNMA----YKWDFFSHLPESLHQ 171
>d1js8a1 a.86.1.1 (A:2503-2791) Mollusc hemocyanin {Giant octopus
(Octopus dofleini) [TaxId: 267067]}
Length = 289
Score = 26.0 bits (56), Expect = 3.2
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 8 SMVRTELREVTVEEVTAFTDAFN 30
+++R + +T ++ DA
Sbjct: 1 AIIRKNVNSLTPSDIKELRDAMA 23
>d2ayxa2 c.23.1.6 (A:700-816) Sensor kinase protein RcsC
{Escherichia coli [TaxId: 562]}
Length = 117
Score = 25.1 bits (55), Expect = 3.4
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 66 RNIRFANYLRNLLPSNDIGVMRYAAKTV 93
RN +L L + I V Y +
Sbjct: 15 RNASLCQFLETSLQRSGIVVTTYEGQEP 42
>d1a4ea_ e.5.1.1 (A:) Catalase I {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 488
Score = 26.1 bits (57), Expect = 3.6
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 140 VTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAKQ 191
P F + F F+ + R+P+ +R L + + Q
Sbjct: 129 NNTPVFFIRDPSKFPHFIHTQKRNPQTNLRDAD--MFWDFLTTPENQVAIHQ 178
>d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId: 210]}
Length = 491
Score = 25.7 bits (56), Expect = 4.3
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 140 VTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAKQ 191
P F + F DF+ + RDP+ + H + ES Q
Sbjct: 129 NNTPVFFIRDAIKFPDFIHTQKRDPQTNLPNHD----MVWDFWSNVPESLYQ 176
>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli
[TaxId: 562]}
Length = 282
Score = 24.7 bits (53), Expect = 7.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 168 IRLHAVKAIRAALVVTAQRESAKQSQKPQ 196
IR+H VK A+ V SAK++++ +
Sbjct: 254 IRVHDVKETVEAMRVVEATLSAKENKRYE 282
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.133 0.379
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 705,931
Number of extensions: 31450
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 23
Length of query: 197
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 116
Effective length of database: 1,295,466
Effective search space: 150274056
Effective search space used: 150274056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.6 bits)