Query psy11495
Match_columns 81
No_of_seqs 49 out of 51
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 19:51:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0891|consensus 97.7 2.3E-05 5E-10 74.0 3.4 47 6-61 211-257 (2341)
2 TIGR03761 ICE_PFL4669 integrat 48.2 14 0.00029 28.1 1.9 40 10-67 155-194 (216)
3 PF07903 PaRep2a: PaRep2a prot 46.6 9.8 0.00021 27.2 0.9 12 10-21 5-16 (122)
4 PF07079 DUF1347: Protein of u 40.9 20 0.00043 31.0 2.0 32 13-46 507-538 (549)
5 TIGR03706 exo_poly_only exopol 33.0 90 0.002 23.5 4.3 28 29-56 251-280 (300)
6 PF10211 Ax_dynein_light: Axon 30.7 38 0.00082 24.6 1.8 13 10-22 61-73 (189)
7 KOG3612|consensus 27.9 36 0.00078 29.8 1.5 21 2-22 519-539 (588)
8 TIGR03486 cas_csx13_C CRISPR-a 27.5 1.4E+02 0.0031 21.8 4.4 60 9-70 49-113 (152)
9 PF13041 PPR_2: PPR repeat fam 26.6 82 0.0018 17.0 2.4 25 17-43 19-43 (50)
10 PF00763 THF_DHG_CYH: Tetrahyd 26.4 9.1 0.0002 25.5 -1.8 16 30-45 78-93 (117)
11 PF09403 FadA: Adhesion protei 25.7 50 0.0011 23.1 1.7 28 2-29 76-103 (126)
12 PF01707 Peptidase_C9: Peptida 24.2 42 0.00092 25.7 1.2 15 36-50 79-93 (202)
13 PF10274 ParcG: Parkin co-regu 22.7 1.3E+02 0.0027 22.4 3.4 38 34-71 90-128 (183)
14 PRK09547 nhaB sodium/proton an 22.5 41 0.0009 28.6 0.9 12 7-18 15-26 (513)
15 KOG4001|consensus 22.4 55 0.0012 25.8 1.5 23 11-34 127-149 (259)
16 PF07527 Hairy_orange: Hairy O 21.2 75 0.0016 17.7 1.6 15 13-27 7-21 (43)
17 PRK11031 guanosine pentaphosph 21.2 1.8E+02 0.004 23.8 4.4 45 12-56 235-281 (496)
18 PRK01919 tatB sec-independent 21.0 43 0.00093 24.9 0.6 12 4-15 128-139 (169)
No 1
>KOG0891|consensus
Probab=97.73 E-value=2.3e-05 Score=73.98 Aligned_cols=47 Identities=43% Similarity=0.538 Sum_probs=42.0
Q ss_pred hhchhHHHHHHHHHHHhchhhhhhhhccCccchhhhhHHHHHHHHHhccChHHHHH
Q psy11495 6 EKSAYATYRLCFEEAMSGLDEVFSREKGVNREDRIHGSLLVLNELLRVSNVTWERT 61 (81)
Q Consensus 6 e~qk~qWY~~Cy~EA~~~f~e~~~keKglnRDDRiHG~LLILNELLR~sn~~~Er~ 61 (81)
.+.+++||++||++|.-+|.....+ +||++|++|||+|+++.-+++.
T Consensus 211 ~~~~~~~~~rcvd~~~~~l~~~~~~---------~~~~~~~~~e~~~~~~~~~~~~ 257 (2341)
T KOG0891|consen 211 AKLKPQWYQRCVDEARHGLSSDGVK---------IHASLLVYNELLRISDPFLEKY 257 (2341)
T ss_pred chhhhHHHHHHHHhccccccchHHH---------hhhHHHHHHHHHHHHHHHHHhh
Confidence 3679999999999999999887664 9999999999999999998653
No 2
>TIGR03761 ICE_PFL4669 integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=48.24 E-value=14 Score=28.06 Aligned_cols=40 Identities=25% Similarity=0.217 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHhchhhhhhhhccCccchhhhhHHHHHHHHHhccChHHHHHHHHHHh
Q psy11495 10 YATYRLCFEEAMSGLDEVFSREKGVNREDRIHGSLLVLNELLRVSNVTWERTYEDLMN 67 (81)
Q Consensus 10 ~qWY~~Cy~EA~~~f~e~~~keKglnRDDRiHG~LLILNELLR~sn~~~Er~r~el~~ 67 (81)
..|.+++|..+.+. +--|+||||..++ |+.|.+..+.|.+
T Consensus 155 ~~~vR~vf~~~~~y------r~~gvtR~D~~~~------------n~~a~~Aie~~G~ 194 (216)
T TIGR03761 155 AHLIRRLFGLAQRY------RHSGVTRDDFAAN------------NARARKAIERFGE 194 (216)
T ss_pred HHHHHHHHHHHHhh------hcCCCCHHHHHhC------------CHHHHHHHHHcCC
Confidence 46788899999887 5678999998654 5556655555543
No 3
>PF07903 PaRep2a: PaRep2a protein; InterPro: IPR012490 This is a family of proteins expressed by the crenarchaeon Pyrobaculum aerophilum. The members are highly variable in length and level of conservation. The presence of numerous frameshifts and internal stop codons in multiple alignments are thought to indicate that most family members are no longer functional [].
Probab=46.62 E-value=9.8 Score=27.16 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHH
Q psy11495 10 YATYRLCFEEAM 21 (81)
Q Consensus 10 ~qWY~~Cy~EA~ 21 (81)
.+||+|||.+..
T Consensus 5 ~~w~~~cf~~~~ 16 (122)
T PF07903_consen 5 AQWYRQCFGRTP 16 (122)
T ss_pred HHHHHHHcCCCC
Confidence 489999998874
No 4
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=40.87 E-value=20 Score=31.02 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=26.3
Q ss_pred HHHHHHHHHhchhhhhhhhccCccchhhhhHHHH
Q psy11495 13 YRLCFEEAMSGLDEVFSREKGVNREDRIHGSLLV 46 (81)
Q Consensus 13 Y~~Cy~EA~~~f~e~~~keKglnRDDRiHG~LLI 46 (81)
|..||+||...|.+.+..++ .||-.||-+|++
T Consensus 507 e~k~Y~eA~~~l~~LP~n~~--~~dskvqKAl~l 538 (549)
T PF07079_consen 507 ENKRYQEAWEYLQKLPPNER--MRDSKVQKALAL 538 (549)
T ss_pred HHhhHHHHHHHHHhCCCchh--hHHHHHHHHHHH
Confidence 45699999999999887554 688899998876
No 5
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=32.98 E-value=90 Score=23.47 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=22.6
Q ss_pred hhhccCccc--hhhhhHHHHHHHHHhccCh
Q psy11495 29 SREKGVNRE--DRIHGSLLVLNELLRVSNV 56 (81)
Q Consensus 29 ~keKglnRD--DRiHG~LLILNELLR~sn~ 56 (81)
.+..|+..| |-+.++++|+++++...+.
T Consensus 251 ~~~~gl~~~Rad~i~~g~~i~~~l~~~~~~ 280 (300)
T TIGR03706 251 LKLPGLSKDRADILPGGAAVLEELFRALGI 280 (300)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 355677655 9999999999999998765
No 6
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=30.68 E-value=38 Score=24.61 Aligned_cols=13 Identities=31% Similarity=0.715 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHh
Q psy11495 10 YATYRLCFEEAMS 22 (81)
Q Consensus 10 ~qWY~~Cy~EA~~ 22 (81)
-++|.+||+|-++
T Consensus 61 ~~ly~~~F~ELIR 73 (189)
T PF10211_consen 61 EELYSQCFDELIR 73 (189)
T ss_pred HHHHHHHHHHHHH
Confidence 3699999999987
No 7
>KOG3612|consensus
Probab=27.90 E-value=36 Score=29.76 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=18.8
Q ss_pred hhHhhhchhHHHHHHHHHHHh
Q psy11495 2 KALREKSAYATYRLCFEEAMS 22 (81)
Q Consensus 2 ~~~ke~qk~qWY~~Cy~EA~~ 22 (81)
.+|-|.-|-||-.+|-+||+-
T Consensus 519 r~l~etKkKQWC~nC~~EAiy 539 (588)
T KOG3612|consen 519 RALAETKKKQWCYNCLDEAIY 539 (588)
T ss_pred HHHHHHHHHHHHHhhhHHHHH
Confidence 578888999999999999984
No 8
>TIGR03486 cas_csx13_C CRISPR-associated protein, Cas_csx13 family, C-terminal region. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the C-terminal region or upstream gene; the N-terminal region is modelled by TIGR03485. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.
Probab=27.50 E-value=1.4e+02 Score=21.84 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHhch-hhhhh--hhcc-Cccch-hhhhHHHHHHHHHhccChHHHHHHHHHHhhhc
Q psy11495 9 AYATYRLCFEEAMSGL-DEVFS--REKG-VNRED-RIHGSLLVLNELLRVSNVTWERTYEDLMNRLQ 70 (81)
Q Consensus 9 k~qWY~~Cy~EA~~~f-~e~~~--keKg-lnRDD-RiHG~LLILNELLR~sn~~~Er~r~el~~~~~ 70 (81)
.-||+-+.|.||++.+ .-+.+ +++| .++-+ .-+=.==|.|+|+||+.++ ..+.-+-++..
T Consensus 49 ~eq~fiqa~HeAlr~~~~qI~~~tk~~g~~~~~~~~e~e~erir~~l~r~kt~~--~fr~~i~df~s 113 (152)
T TIGR03486 49 AEQWFVQSFHEALRRIYAKIASHTKRRGSETLGDRWKRENERIYSSLARAKTSE--QFRTFIADLWA 113 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhccCCHH--HHHHHHHHHHH
Confidence 4789999999999765 33333 4444 33332 2233445889999998875 34444444443
No 9
>PF13041 PPR_2: PPR repeat family
Probab=26.64 E-value=82 Score=17.03 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=12.9
Q ss_pred HHHHHhchhhhhhhhccCccchhhhhH
Q psy11495 17 FEEAMSGLDEVFSREKGVNREDRIHGS 43 (81)
Q Consensus 17 y~EA~~~f~e~~~keKglnRDDRiHG~ 43 (81)
+++|.+.|++.. ++|+.-|-.....
T Consensus 19 ~~~a~~l~~~M~--~~g~~P~~~Ty~~ 43 (50)
T PF13041_consen 19 FEEALKLFKEMK--KRGIKPDSYTYNI 43 (50)
T ss_pred HHHHHHHHHHHH--HcCCCCCHHHHHH
Confidence 456666666653 3455555444433
No 10
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=26.45 E-value=9.1 Score=25.51 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=10.7
Q ss_pred hhccCccchhhhhHHH
Q psy11495 30 REKGVNREDRIHGSLL 45 (81)
Q Consensus 30 keKglnRDDRiHG~LL 45 (81)
.-+.+|.|+.|||-|+
T Consensus 78 ~i~~lN~D~~V~GIlv 93 (117)
T PF00763_consen 78 LIEKLNEDPSVHGILV 93 (117)
T ss_dssp HHHHHHH-TT-SEEEE
T ss_pred HHHHHhCCCCCCEEEE
Confidence 3455899999999775
No 11
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=25.69 E-value=50 Score=23.12 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=24.1
Q ss_pred hhHhhhchhHHHHHHHHHHHhchhhhhh
Q psy11495 2 KALREKSAYATYRLCFEEAMSGLDEVFS 29 (81)
Q Consensus 2 ~~~ke~qk~qWY~~Cy~EA~~~f~e~~~ 29 (81)
..+++..+.-||+.-|.+-.+-|.+...
T Consensus 76 ~kl~~~~~~r~yk~eYk~llk~y~~~~~ 103 (126)
T PF09403_consen 76 EKLKQDSKVRWYKDEYKELLKKYKDLLN 103 (126)
T ss_dssp HHHHHHGGGSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999998888654
No 12
>PF01707 Peptidase_C9: Peptidase family C9; InterPro: IPR002620 The family of alphaviruses includes 26 known members. They infect a variety of hosts including mosquitoes, birds, rodents and other mammals with worldwide distribution. Alphaviruses also pose a potential threat to human health in many area. For example, Venezuelan Equine Encephalitis Virus (VEEV) causes encephalitis in humans as well as livestock in Central and South America, and some variants of Sinbis Virus (SIN) and Semliki Forest Virus (SFV) have been found to cause fever and arthritis in humans []. Alphaviruses possess a single-stranded RNA genome of approximately 12 kb. The genomic RNA of alphaviruses is translated into two polyproteins that, respectively, encode structural proteins and nonstructural proteins. The nonstructural proteins may be translated as one or two polyproteins, nsp123 or nsp1234, depending on the virus. These polyproteins are cleaved to generate nsp1, nsp2, nsp3 and nsp4 by a protease activity that resides within nsp2 []. The nsp2 protein of alphaviruses has multiple enzymatic acivities. Its N-terminal domain has been shown to possess ATPase and GTPase activity, RNA helicase activity and RNA 5'-triphosphatase activity []. The C-terminal nsp2pro domain of nsp2 is responsible for the regulation of 26S subgenome RNA synthesis, switching between negative- and positive-strand RNA synthesis, targeting nsp2 for nuclear transport and proteolytic processing of the nonstructural polyprotein [, ]. The nsp2pro domain is a member of peptidase family C9 of clan CA. The nsp2pro domain consists of two distinct subdomains. The nsp2pro N-terminal subdomain is largely alpha-helical and contains the catalytic dyad cysteine and histidine residues organised in a protein fold that differs significantly from any known cysteine protease or protein folds. The nsp2pro C-terminal subdomain displays structural similarity to S-adenosyl- L-methionine-dependent RNA methyltransferases and provides essential elements that contribute to substrate recognition and may also regulate the structure of the substrate binding cleft []. This entry represents the nsp2pro domain.; PDB: 3TRK_A 2HWK_A.
Probab=24.23 E-value=42 Score=25.75 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=10.1
Q ss_pred cchhhhhHHHHHHHH
Q psy11495 36 REDRIHGSLLVLNEL 50 (81)
Q Consensus 36 RDDRiHG~LLILNEL 50 (81)
++|+.|+....||++
T Consensus 79 ~~Dka~S~e~ALn~i 93 (202)
T PF01707_consen 79 KEDKAYSPEVALNEI 93 (202)
T ss_dssp HTT----HHHHHHHH
T ss_pred hcCcccCHHHHHHHH
Confidence 679999999999997
No 13
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=22.70 E-value=1.3e+02 Score=22.40 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=30.4
Q ss_pred Cccc-hhhhhHHHHHHHHHhccChHHHHHHHHHHhhhcc
Q psy11495 34 VNRE-DRIHGSLLVLNELLRVSNVTWERTYEDLMNRLQV 71 (81)
Q Consensus 34 lnRD-DRiHG~LLILNELLR~sn~~~Er~r~el~~~~~~ 71 (81)
.+|| +-+.-+|-+|+-|+.++..-+|-+.--+.+++++
T Consensus 90 ~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ 128 (183)
T PF10274_consen 90 NTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPV 128 (183)
T ss_pred hCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 4588 8889999999999999999999885555555543
No 14
>PRK09547 nhaB sodium/proton antiporter; Reviewed
Probab=22.53 E-value=41 Score=28.61 Aligned_cols=12 Identities=17% Similarity=0.185 Sum_probs=8.9
Q ss_pred hchhHHHHHHHH
Q psy11495 7 KSAYATYRLCFE 18 (81)
Q Consensus 7 ~qk~qWY~~Cy~ 18 (81)
.+.|.|||.|.-
T Consensus 15 ~~~~~~~~~~~~ 26 (513)
T PRK09547 15 GQSPDWYKLAII 26 (513)
T ss_pred CCCchHHHHHHH
Confidence 368999998753
No 15
>KOG4001|consensus
Probab=22.40 E-value=55 Score=25.83 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhchhhhhhhhccC
Q psy11495 11 ATYRLCFEEAMSGLDEVFSREKGV 34 (81)
Q Consensus 11 qWY~~Cy~EA~~~f~e~~~keKgl 34 (81)
+-|.|||||.++--.- ...++|+
T Consensus 127 eLYsQcFDElIRqvs~-scveRGl 149 (259)
T KOG4001|consen 127 ELYSQCFDELIRQVSV-SCVERGL 149 (259)
T ss_pred HHHHHHHHHHHHHcch-hHHhcce
Confidence 5799999999974322 2346663
No 16
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=21.23 E-value=75 Score=17.68 Aligned_cols=15 Identities=33% Similarity=0.538 Sum_probs=12.4
Q ss_pred HHHHHHHHHhchhhh
Q psy11495 13 YRLCFEEAMSGLDEV 27 (81)
Q Consensus 13 Y~~Cy~EA~~~f~e~ 27 (81)
|.+|..|+.+.+...
T Consensus 7 y~~C~~Ev~~fL~~~ 21 (43)
T PF07527_consen 7 YSECLNEVSRFLSSV 21 (43)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC
Confidence 789999999987553
No 17
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=21.16 E-value=1.8e+02 Score=23.77 Aligned_cols=45 Identities=13% Similarity=0.033 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhchhhhhhhhccCccc--hhhhhHHHHHHHHHhccCh
Q psy11495 12 TYRLCFEEAMSGLDEVFSREKGVNRE--DRIHGSLLVLNELLRVSNV 56 (81)
Q Consensus 12 WY~~Cy~EA~~~f~e~~~keKglnRD--DRiHG~LLILNELLR~sn~ 56 (81)
-.+.-|++....-.+-..+-.|++.| |-+=++++||+++++..+.
T Consensus 235 ~l~~l~~~l~~~~~~~~~~~~gl~~~Radii~~g~~Il~~i~~~~~~ 281 (496)
T PRK11031 235 KLQQLKQRAIQCGRLEELEIEGLTLERALVFPSGLAILIAIFEELNI 281 (496)
T ss_pred HHHHHHHHHhcCCHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHcCc
Confidence 34444444443322222355688766 9999999999999998664
No 18
>PRK01919 tatB sec-independent translocase; Provisional
Probab=20.95 E-value=43 Score=24.93 Aligned_cols=12 Identities=8% Similarity=0.252 Sum_probs=10.3
Q ss_pred HhhhchhHHHHH
Q psy11495 4 LREKSAYATYRL 15 (81)
Q Consensus 4 ~ke~qk~qWY~~ 15 (81)
+|+.--|+||++
T Consensus 128 ~k~~a~p~wyk~ 139 (169)
T PRK01919 128 VKQAATPQWYKR 139 (169)
T ss_pred ccCCCCcHHHHH
Confidence 678888999986
Done!