Query psy11495
Match_columns 81
No_of_seqs 49 out of 51
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 19:52:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11495.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11495hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dof_A Transcription elongatio 36.8 39 0.0013 21.7 3.5 21 46-66 26-46 (85)
2 1rdt_E LXXLL motif coactivator 27.2 19 0.00064 18.8 0.6 11 47-57 13-23 (26)
3 1ufi_A CENP-B, major centromer 22.4 84 0.0029 19.2 3.0 32 17-48 9-40 (64)
4 3tad_C Liprin-beta-1; protein 22.0 25 0.00085 26.2 0.6 13 37-49 201-213 (265)
5 2rcc_A Ribonucleoside-diphosph 17.8 67 0.0023 23.8 2.2 19 34-52 216-236 (346)
6 3tac_B Liprin-alpha-2; transfe 17.3 24 0.00083 27.5 -0.3 15 36-50 271-285 (334)
7 1mxr_A Ribonucleotide reductas 17.2 84 0.0029 23.6 2.7 25 34-58 234-261 (375)
8 1hul_A Interleukin-5; cytokine 16.7 19 0.00067 24.2 -0.9 18 39-56 15-32 (108)
9 3mdq_A Exopolyphosphatase; str 16.5 1.7E+02 0.0058 21.1 4.1 27 30-56 261-289 (315)
10 2avr_X Adhesion A; antiparalle 15.0 49 0.0017 22.4 0.8 28 2-29 58-85 (119)
No 1
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=36.78 E-value=39 Score=21.71 Aligned_cols=21 Identities=33% Similarity=0.707 Sum_probs=16.7
Q ss_pred HHHHHHhccChHHHHHHHHHH
Q psy11495 46 VLNELLRVSNVTWERTYEDLM 66 (81)
Q Consensus 46 ILNELLR~sn~~~Er~r~el~ 66 (81)
+|.++||..++.|.-.+..|.
T Consensus 26 LL~DlIr~pd~sW~Eakr~Lr 46 (85)
T 2dof_A 26 LLSDMVRSSDVSWSDTRRTLR 46 (85)
T ss_dssp HHHHHTCCSSCCHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHhc
Confidence 577999999999987666664
No 2
>1rdt_E LXXLL motif coactivator, peroxisome proliferator activated receptor gamma; hormone, polymorphism, hormone/growth factor complex; HET: L79 570; 2.40A {Homo sapiens}
Probab=27.21 E-value=19 Score=18.80 Aligned_cols=11 Identities=45% Similarity=0.528 Sum_probs=8.6
Q ss_pred HHHHHhccChH
Q psy11495 47 LNELLRVSNVT 57 (81)
Q Consensus 47 LNELLR~sn~~ 57 (81)
|+||||-.++.
T Consensus 13 LSeLLR~g~~~ 23 (26)
T 1rdt_E 13 LSELLRGGSGS 23 (26)
T ss_pred HHHHHcCCCCc
Confidence 68999987653
No 3
>1ufi_A CENP-B, major centromere autoantigen B; dimerization domain, salt bridge, riken structural genomics/proteomics initiative, RSGI; 1.65A {Homo sapiens} SCOP: a.30.4.1
Probab=22.39 E-value=84 Score=19.19 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=22.3
Q ss_pred HHHHHhchhhhhhhhccCccchhhhhHHHHHH
Q psy11495 17 FEEAMSGLDEVFSREKGVNREDRIHGSLLVLN 48 (81)
Q Consensus 17 y~EA~~~f~e~~~keKglnRDDRiHG~LLILN 48 (81)
|-||+..|.-.-----.+.=|||+.+-+|-|-
T Consensus 9 fgeamayfamvkryltsfpiddrvqshilhle 40 (64)
T 1ufi_A 9 FGEAMAYFAMVKRYLTSFPIDDRVQSHILHLE 40 (64)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHhh
Confidence 67888888654222234678999999888664
No 4
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Probab=21.99 E-value=25 Score=26.25 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=10.4
Q ss_pred chhhhhHHHHHHH
Q psy11495 37 EDRIHGSLLVLNE 49 (81)
Q Consensus 37 DDRiHG~LLILNE 49 (81)
+-.|||+|+||-+
T Consensus 201 ~sGvhGal~~le~ 213 (265)
T 3tad_C 201 GSGVHGGLMVLEP 213 (265)
T ss_dssp TSCCCHHHHHHCT
T ss_pred hcCccchhhhccC
Confidence 4489999999754
No 5
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125}
Probab=17.81 E-value=67 Score=23.75 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=16.4
Q ss_pred Cccchhhhh--HHHHHHHHHh
Q psy11495 34 VNREDRIHG--SLLVLNELLR 52 (81)
Q Consensus 34 lnRDDRiHG--~LLILNELLR 52 (81)
+.||..+|| +..++|.++.
T Consensus 216 I~RDE~~H~~f~~~l~~~l~~ 236 (346)
T 2rcc_A 216 INRDEQLHVYLFTNIFKELLV 236 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHh
Confidence 789999999 6778888886
No 6
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=17.33 E-value=24 Score=27.53 Aligned_cols=15 Identities=47% Similarity=0.722 Sum_probs=11.7
Q ss_pred cchhhhhHHHHHHHH
Q psy11495 36 REDRIHGSLLVLNEL 50 (81)
Q Consensus 36 RDDRiHG~LLILNEL 50 (81)
++-.|||+|++|-+-
T Consensus 271 ~~SGVHGal~~Le~~ 285 (334)
T 3tac_B 271 LESGVHGSLIALDEN 285 (334)
T ss_dssp TTSCCCHHHHHHCTT
T ss_pred hhcCccceeeeccCC
Confidence 455899999998654
No 7
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ...
Probab=17.23 E-value=84 Score=23.60 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=18.4
Q ss_pred Cccchhhhh--HHHHHHHHHhc-cChHH
Q psy11495 34 VNREDRIHG--SLLVLNELLRV-SNVTW 58 (81)
Q Consensus 34 lnRDDRiHG--~LLILNELLR~-sn~~~ 58 (81)
+.||..+|| +..++|+|..- -++++
T Consensus 234 I~RDE~lH~~~~~~l~~~l~~~~e~p~~ 261 (375)
T 1mxr_A 234 IARDEALHLTGTQHMLNLLRSGADDPEM 261 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCChhh
Confidence 789999998 66778887753 45443
No 8
>1hul_A Interleukin-5; cytokine; 2.40A {Homo sapiens} SCOP: a.26.1.2 PDB: 3qt2_C* 3b5k_A
Probab=16.68 E-value=19 Score=24.19 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=15.2
Q ss_pred hhhhHHHHHHHHHhccCh
Q psy11495 39 RIHGSLLVLNELLRVSNV 56 (81)
Q Consensus 39 RiHG~LLILNELLR~sn~ 56 (81)
-.|..|||=||-||++-+
T Consensus 15 s~hrtlli~~~tLrI~~P 32 (108)
T 1hul_A 15 STHRTLLIANETLRIPVP 32 (108)
T ss_dssp HHSHHHHHTCTTCEEEEC
T ss_pred HhhhhHhccCCceEecCC
Confidence 369999999999999644
No 9
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=16.51 E-value=1.7e+02 Score=21.13 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=22.0
Q ss_pred hhccCccc--hhhhhHHHHHHHHHhccCh
Q psy11495 30 REKGVNRE--DRIHGSLLVLNELLRVSNV 56 (81)
Q Consensus 30 keKglnRD--DRiHG~LLILNELLR~sn~ 56 (81)
+..|++.| |-+-++++|+.++++..+.
T Consensus 261 ~~~gl~~~Rad~i~~g~~Il~~i~~~~~~ 289 (315)
T 3mdq_A 261 AIAGMIELRADMVVVAICLIEHVLKLVST 289 (315)
T ss_dssp TSTTCCHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred hcCCCChhHHHHHHHHHHHHHHHHHHcCc
Confidence 45677755 9999999999999987553
No 10
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=15.04 E-value=49 Score=22.36 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=24.4
Q ss_pred hhHhhhchhHHHHHHHHHHHhchhhhhh
Q psy11495 2 KALREKSAYATYRLCFEEAMSGLDEVFS 29 (81)
Q Consensus 2 ~~~ke~qk~qWY~~Cy~EA~~~f~e~~~ 29 (81)
+.|.++.+.-||+.-|.+-.+-|.+...
T Consensus 58 ~~i~~~~~~~~yK~eY~~L~KkYk~~~~ 85 (119)
T 2avr_X 58 QRLQAEANTRFYKSQYQELASKYEDALK 85 (119)
T ss_dssp HHHHHHTTSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999988754
Done!